HEADER DNA BINDING PROTEIN/DNA 17-JAN-25 9MX8 TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FLI1 IN COMPLEX WITH A TITLE 2 DNA CONTAINING THREE CONTIGUOUS GGAA SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIEND LEUKEMIA INTEGRATION 1 TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, C, D; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN (RESIDUES 259-375); COMPND 5 SYNONYM: PROTO-ONCOGENE FLI-1,TRANSCRIPTION FACTOR ERGB; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(P*GP*AP*CP*CP*GP*GP*AP*AP*GP*GP*AP*AP*GP*GP*AP*AP*GP*TP*G)-3'); COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*CP*AP*CP*TP*TP*CP*CP*TP*TP*CP*CP*TP*TP*CP*CP*GP*GP*TP*C)-3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FLI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS ONCOGENE, EWING SARCOMA, TRANSCRIPTION FACTOR, MICROSATELLITE, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,O.V.TSODIKOV REVDAT 2 23-APR-25 9MX8 1 JRNL REVDAT 1 12-MAR-25 9MX8 0 JRNL AUTH C.HOU,O.V.TSODIKOV JRNL TITL STRUCTURE AND COOPERATIVE FORMATION OF A FLI1 FILAMENT ON JRNL TITL 2 CONTIGUOUS GGAA DNA SITES. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 40131773 JRNL DOI 10.1093/NAR/GKAF205 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 65.2 REMARK 3 NUMBER OF REFLECTIONS : 9739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 552 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2415 REMARK 3 NUCLEIC ACID ATOMS : 775 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.590 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.366 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.466 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.879 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.833 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3349 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2711 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4682 ; 1.078 ; 1.513 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6253 ; 1.135 ; 1.817 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 5.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;34.652 ;21.418 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;17.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.058 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3273 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 820 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 1.923 ; 6.900 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1194 ; 1.922 ; 6.898 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1485 ; 3.460 ;10.326 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1486 ; 3.459 ;10.328 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2154 ; 1.433 ; 5.531 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2153 ; 1.432 ; 5.531 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3197 ; 2.628 ; 8.248 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4022 ; 5.268 ;62.720 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4023 ; 5.267 ;62.713 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9MX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1000291984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10335 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5JVT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, PH 7.0, 1.6 M REMARK 280 SODIUM ACETATE, ADDED CRYOPROTECTANT: 34% SUCROSE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.48533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.24267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.24267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.48533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 255 REMARK 465 PRO A 256 REMARK 465 HIS A 257 REMARK 465 MET A 258 REMARK 465 GLN A 259 REMARK 465 PRO A 260 REMARK 465 ASP A 261 REMARK 465 ASN A 275 REMARK 465 PRO A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 GLY A 279 REMARK 465 GLN A 280 REMARK 465 THR A 374 REMARK 465 GLU A 375 REMARK 465 GLY C 255 REMARK 465 PRO C 256 REMARK 465 HIS C 257 REMARK 465 MET C 258 REMARK 465 GLN C 259 REMARK 465 PRO C 260 REMARK 465 ASP C 261 REMARK 465 PRO C 262 REMARK 465 TYR C 263 REMARK 465 GLN C 264 REMARK 465 ILE C 265 REMARK 465 LEU C 266 REMARK 465 GLY C 267 REMARK 465 PRO C 268 REMARK 465 THR C 269 REMARK 465 SER C 270 REMARK 465 SER C 271 REMARK 465 ARG C 272 REMARK 465 LEU C 273 REMARK 465 ALA C 274 REMARK 465 ASN C 275 REMARK 465 PRO C 276 REMARK 465 GLY C 277 REMARK 465 SER C 278 REMARK 465 GLY C 279 REMARK 465 THR C 374 REMARK 465 GLU C 375 REMARK 465 GLY D 255 REMARK 465 PRO D 256 REMARK 465 HIS D 257 REMARK 465 MET D 258 REMARK 465 GLN D 259 REMARK 465 PRO D 260 REMARK 465 ASP D 261 REMARK 465 PRO D 262 REMARK 465 TYR D 263 REMARK 465 GLN D 264 REMARK 465 ILE D 265 REMARK 465 LEU D 266 REMARK 465 GLY D 267 REMARK 465 PRO D 268 REMARK 465 THR D 269 REMARK 465 SER D 270 REMARK 465 PRO D 276 REMARK 465 GLY D 277 REMARK 465 SER D 278 REMARK 465 THR D 374 REMARK 465 GLU D 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 263 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 264 CG CD OE1 NE2 REMARK 470 THR A 269 OG1 CG2 REMARK 470 ASP A 293 CB CG OD1 OD2 REMARK 470 ALA A 295 CB REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 THR A 305 CB OG1 CG2 REMARK 470 LYS A 354 CD CE NZ REMARK 470 GLU C 303 CD OE1 OE2 REMARK 470 GLU C 323 CB CG CD OE1 OE2 REMARK 470 LYS C 354 CD CE NZ REMARK 470 ARG D 272 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 275 CG OD1 ND2 REMARK 470 THR D 305 CB OG1 CG2 REMARK 470 LYS D 354 CD CE NZ REMARK 470 DC F 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 293 -129.71 63.50 REMARK 500 SER A 294 -155.40 -170.60 REMARK 500 ALA A 295 -23.23 85.45 REMARK 500 GLU A 303 -89.09 -107.69 REMARK 500 PRO A 328 -174.06 -68.71 REMARK 500 ASN C 296 32.34 -97.07 REMARK 500 GLU C 303 36.82 -141.51 REMARK 500 THR C 305 -117.46 44.89 REMARK 500 MET C 330 113.36 -33.60 REMARK 500 ASN C 346 30.72 71.47 REMARK 500 GLN C 370 49.59 -148.80 REMARK 500 ASP D 313 76.01 -153.04 REMARK 500 SER D 326 77.33 46.11 REMARK 500 LYS D 327 78.94 -159.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9MWY RELATED DB: PDB REMARK 900 4:1 FLI1-DNA COMPLEX DBREF 9MX8 A 259 375 UNP Q01543 FLI1_HUMAN 259 375 DBREF 9MX8 C 259 375 UNP Q01543 FLI1_HUMAN 259 375 DBREF 9MX8 D 259 375 UNP Q01543 FLI1_HUMAN 259 375 DBREF 9MX8 E -3 15 PDB 9MX8 9MX8 -3 15 DBREF 9MX8 F 1 19 PDB 9MX8 9MX8 1 19 SEQADV 9MX8 GLY A 255 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 PRO A 256 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 HIS A 257 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 MET A 258 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 ALA A 362 UNP Q01543 PHE 362 ENGINEERED MUTATION SEQADV 9MX8 GLY C 255 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 PRO C 256 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 HIS C 257 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 MET C 258 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 ALA C 362 UNP Q01543 PHE 362 ENGINEERED MUTATION SEQADV 9MX8 GLY D 255 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 PRO D 256 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 HIS D 257 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 MET D 258 UNP Q01543 EXPRESSION TAG SEQADV 9MX8 ALA D 362 UNP Q01543 PHE 362 ENGINEERED MUTATION SEQRES 1 A 121 GLY PRO HIS MET GLN PRO ASP PRO TYR GLN ILE LEU GLY SEQRES 2 A 121 PRO THR SER SER ARG LEU ALA ASN PRO GLY SER GLY GLN SEQRES 3 A 121 ILE GLN LEU TRP GLN PHE LEU LEU GLU LEU LEU SER ASP SEQRES 4 A 121 SER ALA ASN ALA SER CYS ILE THR TRP GLU GLY THR ASN SEQRES 5 A 121 GLY GLU PHE LYS MET THR ASP PRO ASP GLU VAL ALA ARG SEQRES 6 A 121 ARG TRP GLY GLU ARG LYS SER LYS PRO ASN MET ASN TYR SEQRES 7 A 121 ASP LYS LEU SER ARG ALA LEU ARG TYR TYR TYR ASP LYS SEQRES 8 A 121 ASN ILE MET THR LYS VAL HIS GLY LYS ARG TYR ALA TYR SEQRES 9 A 121 LYS PHE ASP ALA HIS GLY ILE ALA GLN ALA LEU GLN PRO SEQRES 10 A 121 HIS PRO THR GLU SEQRES 1 C 121 GLY PRO HIS MET GLN PRO ASP PRO TYR GLN ILE LEU GLY SEQRES 2 C 121 PRO THR SER SER ARG LEU ALA ASN PRO GLY SER GLY GLN SEQRES 3 C 121 ILE GLN LEU TRP GLN PHE LEU LEU GLU LEU LEU SER ASP SEQRES 4 C 121 SER ALA ASN ALA SER CYS ILE THR TRP GLU GLY THR ASN SEQRES 5 C 121 GLY GLU PHE LYS MET THR ASP PRO ASP GLU VAL ALA ARG SEQRES 6 C 121 ARG TRP GLY GLU ARG LYS SER LYS PRO ASN MET ASN TYR SEQRES 7 C 121 ASP LYS LEU SER ARG ALA LEU ARG TYR TYR TYR ASP LYS SEQRES 8 C 121 ASN ILE MET THR LYS VAL HIS GLY LYS ARG TYR ALA TYR SEQRES 9 C 121 LYS PHE ASP ALA HIS GLY ILE ALA GLN ALA LEU GLN PRO SEQRES 10 C 121 HIS PRO THR GLU SEQRES 1 D 121 GLY PRO HIS MET GLN PRO ASP PRO TYR GLN ILE LEU GLY SEQRES 2 D 121 PRO THR SER SER ARG LEU ALA ASN PRO GLY SER GLY GLN SEQRES 3 D 121 ILE GLN LEU TRP GLN PHE LEU LEU GLU LEU LEU SER ASP SEQRES 4 D 121 SER ALA ASN ALA SER CYS ILE THR TRP GLU GLY THR ASN SEQRES 5 D 121 GLY GLU PHE LYS MET THR ASP PRO ASP GLU VAL ALA ARG SEQRES 6 D 121 ARG TRP GLY GLU ARG LYS SER LYS PRO ASN MET ASN TYR SEQRES 7 D 121 ASP LYS LEU SER ARG ALA LEU ARG TYR TYR TYR ASP LYS SEQRES 8 D 121 ASN ILE MET THR LYS VAL HIS GLY LYS ARG TYR ALA TYR SEQRES 9 D 121 LYS PHE ASP ALA HIS GLY ILE ALA GLN ALA LEU GLN PRO SEQRES 10 D 121 HIS PRO THR GLU SEQRES 1 E 19 DG DA DC DC DG DG DA DA DG DG DA DA DG SEQRES 2 E 19 DG DA DA DG DT DG SEQRES 1 F 19 DC DA DC DT DT DC DC DT DT DC DC DT DT SEQRES 2 F 19 DC DC DG DG DT DC HELIX 1 AA1 ILE A 265 LEU A 273 1 9 HELIX 2 AA2 GLN A 282 SER A 292 1 11 HELIX 3 AA3 ASP A 313 LYS A 325 1 13 HELIX 4 AA4 ASN A 331 TYR A 341 1 11 HELIX 5 AA5 ASP A 361 GLN A 370 1 10 HELIX 6 AA6 GLN C 282 SER C 292 1 11 HELIX 7 AA7 ASP C 293 ALA C 297 5 5 HELIX 8 AA8 ASP C 313 LYS C 325 1 13 HELIX 9 AA9 ASN C 331 ASN C 346 1 16 HELIX 10 AB1 ASP C 361 GLN C 367 1 7 HELIX 11 AB2 GLN D 282 ASP D 293 1 12 HELIX 12 AB3 SER D 294 ALA D 297 5 4 HELIX 13 AB4 ASP D 313 SER D 326 1 14 HELIX 14 AB5 ASN D 331 TYR D 341 1 11 HELIX 15 AB6 TYR D 342 ASP D 344 5 3 HELIX 16 AB7 ASP D 361 GLN D 370 1 10 SHEET 1 AA1 4 ILE A 300 TRP A 302 0 SHEET 2 AA1 4 GLU A 308 MET A 311 -1 O LYS A 310 N THR A 301 SHEET 3 AA1 4 ALA A 357 PHE A 360 -1 O TYR A 358 N PHE A 309 SHEET 4 AA1 4 MET A 348 LYS A 350 -1 N THR A 349 O LYS A 359 SHEET 1 AA2 4 ILE C 300 TRP C 302 0 SHEET 2 AA2 4 GLU C 308 MET C 311 -1 O LYS C 310 N THR C 301 SHEET 3 AA2 4 ALA C 357 PHE C 360 -1 O TYR C 358 N PHE C 309 SHEET 4 AA2 4 MET C 348 LYS C 350 -1 N THR C 349 O LYS C 359 SHEET 1 AA3 4 ILE D 300 TRP D 302 0 SHEET 2 AA3 4 GLU D 308 MET D 311 -1 O LYS D 310 N THR D 301 SHEET 3 AA3 4 ALA D 357 PHE D 360 -1 O TYR D 358 N PHE D 309 SHEET 4 AA3 4 MET D 348 LYS D 350 -1 N THR D 349 O LYS D 359 CRYST1 91.539 91.539 180.728 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010924 0.006307 0.000000 0.00000 SCALE2 0.000000 0.012614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005533 0.00000 TER 842 PRO A 373 TER 1611 PRO C 373 TER 2418 PRO D 373 TER 2822 DG E 15 TER 3195 DC F 19 MASTER 375 0 0 16 12 0 0 6 3190 5 0 34 END