data_9N3J # _entry.id 9N3J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9N3J pdb_00009n3j 10.2210/pdb9n3j/pdb WWPDB D_1000290980 ? ? EMDB EMD-48852 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-08-05 ? 2 'EM metadata' 1 0 2026-08-05 ? 3 'Additional map' 1 0 2026-08-05 1 4 FSC 1 0 2026-08-05 ? 5 'Half map' 1 0 2026-08-05 1 6 'Half map' 1 0 2026-08-05 2 7 Image 1 0 2026-08-05 ? 8 Mask 1 0 2026-08-05 1 9 'Primary map' 1 0 2026-08-05 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9N3J _pdbx_database_status.recvd_initial_deposition_date 2025-01-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Vibrio cholerae Glycine Riboswitch - Apo at 3.3A resolution' _pdbx_database_related.db_id EMD-48852 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email kys@lanl.gov _pdbx_contact_author.name_first Karissa _pdbx_contact_author.name_last Sanbonmatsu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7965-7392 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jespersen, N.' 1 0000-0001-6931-1526 'Singhal, A.' 2 0000-0003-2949-6962 'Prajapati, J.D.' 3 0000-0002-7129-403X 'Sanbonmatsu, K.' 4 0000-0002-7965-7392 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Vibrio cholerae Glycine Riboswitch - Apo at 3.3A resolution' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jespersen, N.' 1 0000-0001-6931-1526 primary 'Singhal, A.' 2 0000-0003-2949-6962 primary 'Prajapati, J.D.' 3 0000-0002-7129-403X primary 'Sanbonmatsu, K.' 4 0000-0002-7965-7392 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Glycine Riboswitch' 76063.195 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GUCCGUUGAAGACUGCAGGAGAGUGGUUGUUAACCAGAUUUUAACAUCUGAGCCAAAUAACCCGCCGAAGAAGUAAAUCU UUCAGGUGCAUUAUUCUUAGCCAUAUAUUGGCAACGAAUAAGCGAGGACUGUAGUUGGAGGAACCUCUGGAGAGAACCGU UUAAUCGGUCGCCGAAGGAGCAAGCUCUGCGCAUAUGCAGAGUGAAACUCUCAGGCAAAAGGACAGAGGAGUGAA ; _entity_poly.pdbx_seq_one_letter_code_can ;GUCCGUUGAAGACUGCAGGAGAGUGGUUGUUAACCAGAUUUUAACAUCUGAGCCAAAUAACCCGCCGAAGAAGUAAAUCU UUCAGGUGCAUUAUUCUUAGCCAUAUAUUGGCAACGAAUAAGCGAGGACUGUAGUUGGAGGAACCUCUGGAGAGAACCGU UUAAUCGGUCGCCGAAGGAGCAAGCUCUGCGCAUAUGCAGAGUGAAACUCUCAGGCAAAAGGACAGAGGAGUGAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 C n 1 4 C n 1 5 G n 1 6 U n 1 7 U n 1 8 G n 1 9 A n 1 10 A n 1 11 G n 1 12 A n 1 13 C n 1 14 U n 1 15 G n 1 16 C n 1 17 A n 1 18 G n 1 19 G n 1 20 A n 1 21 G n 1 22 A n 1 23 G n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 G n 1 30 U n 1 31 U n 1 32 A n 1 33 A n 1 34 C n 1 35 C n 1 36 A n 1 37 G n 1 38 A n 1 39 U n 1 40 U n 1 41 U n 1 42 U n 1 43 A n 1 44 A n 1 45 C n 1 46 A n 1 47 U n 1 48 C n 1 49 U n 1 50 G n 1 51 A n 1 52 G n 1 53 C n 1 54 C n 1 55 A n 1 56 A n 1 57 A n 1 58 U n 1 59 A n 1 60 A n 1 61 C n 1 62 C n 1 63 C n 1 64 G n 1 65 C n 1 66 C n 1 67 G n 1 68 A n 1 69 A n 1 70 G n 1 71 A n 1 72 A n 1 73 G n 1 74 U n 1 75 A n 1 76 A n 1 77 A n 1 78 U n 1 79 C n 1 80 U n 1 81 U n 1 82 U n 1 83 C n 1 84 A n 1 85 G n 1 86 G n 1 87 U n 1 88 G n 1 89 C n 1 90 A n 1 91 U n 1 92 U n 1 93 A n 1 94 U n 1 95 U n 1 96 C n 1 97 U n 1 98 U n 1 99 A n 1 100 G n 1 101 C n 1 102 C n 1 103 A n 1 104 U n 1 105 A n 1 106 U n 1 107 A n 1 108 U n 1 109 U n 1 110 G n 1 111 G n 1 112 C n 1 113 A n 1 114 A n 1 115 C n 1 116 G n 1 117 A n 1 118 A n 1 119 U n 1 120 A n 1 121 A n 1 122 G n 1 123 C n 1 124 G n 1 125 A n 1 126 G n 1 127 G n 1 128 A n 1 129 C n 1 130 U n 1 131 G n 1 132 U n 1 133 A n 1 134 G n 1 135 U n 1 136 U n 1 137 G n 1 138 G n 1 139 A n 1 140 G n 1 141 G n 1 142 A n 1 143 A n 1 144 C n 1 145 C n 1 146 U n 1 147 C n 1 148 U n 1 149 G n 1 150 G n 1 151 A n 1 152 G n 1 153 A n 1 154 G n 1 155 A n 1 156 A n 1 157 C n 1 158 C n 1 159 G n 1 160 U n 1 161 U n 1 162 U n 1 163 A n 1 164 A n 1 165 U n 1 166 C n 1 167 G n 1 168 G n 1 169 U n 1 170 C n 1 171 G n 1 172 C n 1 173 C n 1 174 G n 1 175 A n 1 176 A n 1 177 G n 1 178 G n 1 179 A n 1 180 G n 1 181 C n 1 182 A n 1 183 A n 1 184 G n 1 185 C n 1 186 U n 1 187 C n 1 188 U n 1 189 G n 1 190 C n 1 191 G n 1 192 C n 1 193 A n 1 194 U n 1 195 A n 1 196 U n 1 197 G n 1 198 C n 1 199 A n 1 200 G n 1 201 A n 1 202 G n 1 203 U n 1 204 G n 1 205 A n 1 206 A n 1 207 A n 1 208 C n 1 209 U n 1 210 C n 1 211 U n 1 212 C n 1 213 A n 1 214 G n 1 215 G n 1 216 C n 1 217 A n 1 218 A n 1 219 A n 1 220 A n 1 221 G n 1 222 G n 1 223 A n 1 224 C n 1 225 A n 1 226 G n 1 227 A n 1 228 G n 1 229 G n 1 230 A n 1 231 G n 1 232 U n 1 233 G n 1 234 A n 1 235 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 235 _pdbx_entity_src_syn.organism_scientific 'Vibrio cholerae' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 666 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 0 ? ? ? A . n A 1 2 U 2 1 1 U U A . n A 1 3 C 3 2 2 C C A . n A 1 4 C 4 3 3 C C A . n A 1 5 G 5 4 4 G G A . n A 1 6 U 6 5 5 U U A . n A 1 7 U 7 6 6 U U A . n A 1 8 G 8 7 7 G G A . n A 1 9 A 9 8 8 A A A . n A 1 10 A 10 9 9 A A A . n A 1 11 G 11 10 10 G G A . n A 1 12 A 12 11 11 A A A . n A 1 13 C 13 12 12 C C A . n A 1 14 U 14 13 13 U U A . n A 1 15 G 15 14 14 G G A . n A 1 16 C 16 15 15 C C A . n A 1 17 A 17 16 16 A A A . n A 1 18 G 18 17 17 G G A . n A 1 19 G 19 18 18 G G A . n A 1 20 A 20 19 19 A A A . n A 1 21 G 21 20 20 G G A . n A 1 22 A 22 21 21 A A A . n A 1 23 G 23 22 22 G G A . n A 1 24 U 24 23 23 U U A . n A 1 25 G 25 24 24 G G A . n A 1 26 G 26 25 25 G G A . n A 1 27 U 27 26 26 U U A . n A 1 28 U 28 27 27 U U A . n A 1 29 G 29 28 28 G G A . n A 1 30 U 30 29 29 U U A . n A 1 31 U 31 30 30 U U A . n A 1 32 A 32 31 31 A A A . n A 1 33 A 33 32 32 A A A . n A 1 34 C 34 33 33 C C A . n A 1 35 C 35 34 34 C C A . n A 1 36 A 36 35 35 A A A . n A 1 37 G 37 36 36 G G A . n A 1 38 A 38 37 37 A A A . n A 1 39 U 39 38 38 U U A . n A 1 40 U 40 39 39 U U A . n A 1 41 U 41 40 40 U U A . n A 1 42 U 42 41 41 U U A . n A 1 43 A 43 42 42 A A A . n A 1 44 A 44 43 43 A A A . n A 1 45 C 45 44 44 C C A . n A 1 46 A 46 45 45 A A A . n A 1 47 U 47 46 46 U U A . n A 1 48 C 48 47 47 C C A . n A 1 49 U 49 48 48 U U A . n A 1 50 G 50 49 49 G G A . n A 1 51 A 51 50 50 A A A . n A 1 52 G 52 51 51 G G A . n A 1 53 C 53 52 52 C C A . n A 1 54 C 54 53 53 C C A . n A 1 55 A 55 54 54 A A A . n A 1 56 A 56 55 55 A A A . n A 1 57 A 57 56 56 A A A . n A 1 58 U 58 57 57 U U A . n A 1 59 A 59 58 58 A A A . n A 1 60 A 60 59 59 A A A . n A 1 61 C 61 60 60 C C A . n A 1 62 C 62 61 61 C C A . n A 1 63 C 63 62 62 C C A . n A 1 64 G 64 63 63 G G A . n A 1 65 C 65 64 64 C C A . n A 1 66 C 66 65 65 C C A . n A 1 67 G 67 66 66 G G A . n A 1 68 A 68 67 67 A A A . n A 1 69 A 69 68 68 A A A . n A 1 70 G 70 69 69 G G A . n A 1 71 A 71 70 70 A A A . n A 1 72 A 72 71 71 A A A . n A 1 73 G 73 72 72 G G A . n A 1 74 U 74 73 73 U U A . n A 1 75 A 75 74 74 A A A . n A 1 76 A 76 75 75 A A A . n A 1 77 A 77 76 76 A A A . n A 1 78 U 78 77 77 U U A . n A 1 79 C 79 78 78 C C A . n A 1 80 U 80 79 79 U U A . n A 1 81 U 81 80 80 U U A . n A 1 82 U 82 81 81 U U A . n A 1 83 C 83 82 82 C C A . n A 1 84 A 84 83 83 A A A . n A 1 85 G 85 84 84 G G A . n A 1 86 G 86 85 85 G G A . n A 1 87 U 87 86 86 U U A . n A 1 88 G 88 87 87 G G A . n A 1 89 C 89 88 88 C C A . n A 1 90 A 90 89 89 A A A . n A 1 91 U 91 90 90 U U A . n A 1 92 U 92 91 91 U U A . n A 1 93 A 93 92 92 A A A . n A 1 94 U 94 93 93 U U A . n A 1 95 U 95 94 94 U U A . n A 1 96 C 96 95 95 C C A . n A 1 97 U 97 96 96 U U A . n A 1 98 U 98 97 97 U U A . n A 1 99 A 99 98 98 A A A . n A 1 100 G 100 99 99 G G A . n A 1 101 C 101 100 100 C C A . n A 1 102 C 102 101 101 C C A . n A 1 103 A 103 102 102 A A A . n A 1 104 U 104 103 103 U U A . n A 1 105 A 105 104 104 A A A . n A 1 106 U 106 105 105 U U A . n A 1 107 A 107 106 106 A A A . n A 1 108 U 108 107 107 U U A . n A 1 109 U 109 108 108 U U A . n A 1 110 G 110 109 109 G G A . n A 1 111 G 111 110 110 G G A . n A 1 112 C 112 111 111 C C A . n A 1 113 A 113 112 112 A A A . n A 1 114 A 114 113 113 A A A . n A 1 115 C 115 114 114 C C A . n A 1 116 G 116 115 115 G G A . n A 1 117 A 117 116 116 A A A . n A 1 118 A 118 117 117 A A A . n A 1 119 U 119 118 118 U U A . n A 1 120 A 120 119 119 A A A . n A 1 121 A 121 120 120 A A A . n A 1 122 G 122 121 121 G G A . n A 1 123 C 123 122 122 C C A . n A 1 124 G 124 123 123 G G A . n A 1 125 A 125 124 124 A A A . n A 1 126 G 126 125 125 G G A . n A 1 127 G 127 126 126 G G A . n A 1 128 A 128 127 127 A A A . n A 1 129 C 129 128 128 C C A . n A 1 130 U 130 129 129 U U A . n A 1 131 G 131 130 130 G G A . n A 1 132 U 132 131 131 U U A . n A 1 133 A 133 132 132 A A A . n A 1 134 G 134 133 133 G G A . n A 1 135 U 135 134 134 U U A . n A 1 136 U 136 135 135 U U A . n A 1 137 G 137 136 136 G G A . n A 1 138 G 138 137 137 G G A . n A 1 139 A 139 138 138 A A A . n A 1 140 G 140 139 139 G G A . n A 1 141 G 141 140 140 G G A . n A 1 142 A 142 141 141 A A A . n A 1 143 A 143 142 142 A A A . n A 1 144 C 144 143 143 C C A . n A 1 145 C 145 144 144 C C A . n A 1 146 U 146 145 145 U U A . n A 1 147 C 147 146 146 C C A . n A 1 148 U 148 147 147 U U A . n A 1 149 G 149 148 148 G G A . n A 1 150 G 150 149 149 G G A . n A 1 151 A 151 150 150 A A A . n A 1 152 G 152 151 151 G G A . n A 1 153 A 153 152 152 A A A . n A 1 154 G 154 153 153 G G A . n A 1 155 A 155 154 154 A A A . n A 1 156 A 156 155 155 A A A . n A 1 157 C 157 156 156 C C A . n A 1 158 C 158 157 157 C C A . n A 1 159 G 159 158 158 G G A . n A 1 160 U 160 159 159 U U A . n A 1 161 U 161 160 160 U U A . n A 1 162 U 162 161 161 U U A . n A 1 163 A 163 162 162 A A A . n A 1 164 A 164 163 163 A A A . n A 1 165 U 165 164 164 U U A . n A 1 166 C 166 165 165 C C A . n A 1 167 G 167 166 166 G G A . n A 1 168 G 168 167 167 G G A . n A 1 169 U 169 168 168 U U A . n A 1 170 C 170 169 169 C C A . n A 1 171 G 171 170 170 G G A . n A 1 172 C 172 171 171 C C A . n A 1 173 C 173 172 172 C C A . n A 1 174 G 174 173 173 G G A . n A 1 175 A 175 174 174 A A A . n A 1 176 A 176 175 175 A A A . n A 1 177 G 177 176 176 G G A . n A 1 178 G 178 177 177 G G A . n A 1 179 A 179 178 178 A A A . n A 1 180 G 180 179 179 G G A . n A 1 181 C 181 180 180 C C A . n A 1 182 A 182 181 181 A A A . n A 1 183 A 183 182 182 A A A . n A 1 184 G 184 183 183 G G A . n A 1 185 C 185 184 184 C C A . n A 1 186 U 186 185 185 U U A . n A 1 187 C 187 186 186 C C A . n A 1 188 U 188 187 187 U U A . n A 1 189 G 189 188 188 G G A . n A 1 190 C 190 189 189 C C A . n A 1 191 G 191 190 190 G G A . n A 1 192 C 192 191 191 C C A . n A 1 193 A 193 192 192 A A A . n A 1 194 U 194 193 193 U U A . n A 1 195 A 195 194 194 A A A . n A 1 196 U 196 195 195 U U A . n A 1 197 G 197 196 196 G G A . n A 1 198 C 198 197 197 C C A . n A 1 199 A 199 198 198 A A A . n A 1 200 G 200 199 199 G G A . n A 1 201 A 201 200 200 A A A . n A 1 202 G 202 201 201 G G A . n A 1 203 U 203 202 202 U U A . n A 1 204 G 204 203 203 G G A . n A 1 205 A 205 204 204 A A A . n A 1 206 A 206 205 205 A A A . n A 1 207 A 207 206 206 A A A . n A 1 208 C 208 207 207 C C A . n A 1 209 U 209 208 208 U U A . n A 1 210 C 210 209 209 C C A . n A 1 211 U 211 210 210 U U A . n A 1 212 C 212 211 211 C C A . n A 1 213 A 213 212 212 A A A . n A 1 214 G 214 213 213 G G A . n A 1 215 G 215 214 214 G G A . n A 1 216 C 216 215 215 C C A . n A 1 217 A 217 216 216 A A A . n A 1 218 A 218 217 217 A A A . n A 1 219 A 219 218 218 A A A . n A 1 220 A 220 219 219 A A A . n A 1 221 G 221 220 220 G G A . n A 1 222 G 222 221 221 G G A . n A 1 223 A 223 222 222 A A A . n A 1 224 C 224 223 223 C C A . n A 1 225 A 225 224 224 A A A . n A 1 226 G 226 225 225 G G A . n A 1 227 A 227 226 226 A A A . n A 1 228 G 228 227 227 G G A . n A 1 229 G 229 228 228 G G A . n A 1 230 A 230 229 229 A A A . n A 1 231 G 231 230 230 G G A . n A 1 232 U 232 231 ? ? ? A . n A 1 233 G 233 232 ? ? ? A . n A 1 234 A 234 233 ? ? ? A . n A 1 235 A 235 234 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 301 101 MG MG A . C 2 MG 1 302 102 MG MG A . D 2 MG 1 303 103 MG MG A . E 2 MG 1 304 104 MG MG A . F 2 MG 1 305 105 MG MG A . G 2 MG 1 306 106 MG MG A . H 2 MG 1 307 107 MG MG A . I 2 MG 1 308 108 MG MG A . J 2 MG 1 309 109 MG MG A . K 2 MG 1 310 110 MG MG A . L 2 MG 1 311 111 MG MG A . M 2 MG 1 312 112 MG MG A . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9N3J _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9N3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9N3J _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9N3J _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.27 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 5523 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.512 ? 8610 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 22.518 ? 3309 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.031 ? 1150 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 230 ? f_plane_restr ? ? ? # _struct.entry_id 9N3J _struct.title 'Vibrio cholerae Glycine Riboswitch - Apo at 3.3A resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9N3J _struct_keywords.text 'Riboswitch, Apo, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP160480.1 _struct_ref.pdbx_db_accession 2772158317 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;UCCGUUGAAGACUGCAGGAGAGUGGUUGUUAACCAGAUUUUAACAUCUGAGCCAAAUAACCCGCCGAAGAAGUAAAUCUU UCAGGUGCAUUAUUCUUAGCCAUAUAUUGGCAACGAAUAAGCGAGGACUGUAGUUGGAGGAACCUCUGGAGAGAACCGUU UAAUCGGUCGCCGAAGGAGCAAGCUCUGCGCAUAUGCAGAGUGAAACUCUCAGGCAAAAGGACAGAGGAGUGAA ; _struct_ref.pdbx_align_begin 1842282 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9N3J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 235 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2772158317 _struct_ref_seq.db_align_beg 1842282 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1842049 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 234 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 9N3J _struct_ref_seq_dif.mon_id G _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name GB _struct_ref_seq_dif.pdbx_seq_db_accession_code 2772158317 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 19 O6 ? ? ? 1_555 H MG . MG ? ? A G 18 A MG 307 1_555 ? ? ? ? ? ? ? 2.603 ? ? metalc2 metalc ? ? A A 69 OP1 ? ? ? 1_555 I MG . MG ? ? A A 68 A MG 308 1_555 ? ? ? ? ? ? ? 1.914 ? ? metalc3 metalc ? ? A G 70 OP2 ? ? ? 1_555 I MG . MG ? ? A G 69 A MG 308 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc4 metalc ? ? A U 74 O4 ? ? ? 1_555 C MG . MG ? ? A U 73 A MG 302 1_555 ? ? ? ? ? ? ? 1.951 ? ? metalc5 metalc ? ? A U 74 OP2 ? ? ? 1_555 J MG . MG ? ? A U 73 A MG 309 1_555 ? ? ? ? ? ? ? 2.932 ? ? metalc6 metalc ? ? A A 176 OP1 ? ? ? 1_555 L MG . MG ? ? A A 175 A MG 311 1_555 ? ? ? ? ? ? ? 2.557 ? ? metalc7 metalc ? ? A C 212 OP2 ? ? ? 1_555 F MG . MG ? ? A C 211 A MG 305 1_555 ? ? ? ? ? ? ? 1.905 ? ? metalc8 metalc ? ? A A 213 OP2 ? ? ? 1_555 F MG . MG ? ? A A 212 A MG 305 1_555 ? ? ? ? ? ? ? 1.897 ? ? metalc9 metalc ? ? A A 220 OP2 ? ? ? 1_555 G MG . MG ? ? A A 219 A MG 306 1_555 ? ? ? ? ? ? ? 2.195 ? ? hydrog1 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 142 N1 ? ? A U 1 A A 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 142 N6 ? ? A U 1 A A 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 O4 ? ? ? 1_555 A G 231 N2 ? ? A U 1 A G 230 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 141 N1 ? ? A C 2 A G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 141 O6 ? ? A C 2 A G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 141 N2 ? ? A C 2 A G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 140 N1 ? ? A C 3 A G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 140 O6 ? ? A C 3 A G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 140 N2 ? ? A C 3 A G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 139 N7 ? ? A G 7 A A 138 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 139 N6 ? ? A G 7 A A 138 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog12 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 138 N3 ? ? A A 8 A G 137 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A A 9 N7 ? ? ? 1_555 A G 138 N2 ? ? A A 8 A G 137 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A A 10 N6 ? ? ? 1_555 A G 137 N3 ? ? A A 9 A G 136 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A A 10 N7 ? ? ? 1_555 A G 137 N2 ? ? A A 9 A G 136 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A G 11 N1 ? ? ? 1_555 A U 136 O2 ? ? A G 10 A U 135 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A G 11 O6 ? ? ? 1_555 A U 136 N3 ? ? A G 10 A U 135 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A A 12 N1 ? ? ? 1_555 A U 135 N3 ? ? A A 11 A U 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 135 O4 ? ? A A 11 A U 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 134 N1 ? ? A C 12 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 134 O6 ? ? A C 12 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 134 N2 ? ? A C 12 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 133 N1 ? ? A U 13 A A 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 133 N6 ? ? A U 13 A A 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 15 N1 ? ? ? 1_555 A U 132 O2 ? ? A G 14 A U 131 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 15 O6 ? ? ? 1_555 A U 132 N3 ? ? A G 14 A U 131 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 131 N1 ? ? A C 15 A G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 131 O6 ? ? A C 15 A G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 131 N2 ? ? A C 15 A G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 130 N3 ? ? A A 16 A U 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 130 O4 ? ? A A 16 A U 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 129 N3 ? ? A G 17 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 129 O2 ? ? A G 17 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 129 N4 ? ? A G 17 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 18 N1 ? ? ? 1_555 A U 130 O2 ? ? A G 17 A U 129 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 18 O6 ? ? ? 1_555 A U 130 N3 ? ? A G 17 A U 129 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 128 N7 ? ? A G 18 A A 127 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 129 N3 ? ? A G 18 A C 128 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog39 hydrog ? ? A A 20 N7 ? ? ? 1_555 A G 127 N2 ? ? A A 19 A G 126 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog40 hydrog ? ? A G 21 O6 ? ? ? 1_555 A G 126 N2 ? ? A G 20 A G 125 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog41 hydrog ? ? A A 22 N3 ? ? ? 1_555 A G 86 N2 ? ? A A 21 A G 85 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog42 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 22 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 22 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 22 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 24 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 24 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 24 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 25 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 25 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 25 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 60 N1 ? ? A U 26 A A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 60 N6 ? ? A U 26 A A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 59 N1 ? ? A U 27 A A 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 59 N6 ? ? A U 27 A A 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 29 N1 ? ? ? 1_555 A U 58 O2 ? ? A G 28 A U 57 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog56 hydrog ? ? A G 29 O6 ? ? ? 1_555 A U 58 N3 ? ? A G 28 A U 57 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog57 hydrog ? ? A U 30 N3 ? ? ? 1_555 A A 57 N1 ? ? A U 29 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 30 O4 ? ? ? 1_555 A A 57 N6 ? ? A U 29 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 56 N1 ? ? A U 30 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 56 N6 ? ? A U 30 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 32 N6 ? ? ? 1_555 A C 54 N3 ? ? A A 31 A C 53 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog62 hydrog ? ? A A 32 N3 ? ? ? 1_555 A A 55 N6 ? ? A A 31 A A 54 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog63 hydrog ? ? A A 33 N1 ? ? ? 1_555 A G 52 N1 ? ? A A 32 A G 51 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog64 hydrog ? ? A A 33 N6 ? ? ? 1_555 A G 52 O6 ? ? A A 32 A G 51 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog65 hydrog ? ? A C 34 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 33 A A 50 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog66 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 52 N1 ? ? A C 33 A G 51 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog67 hydrog ? ? A C 35 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 34 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 35 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 34 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 35 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 34 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 36 N1 ? ? ? 1_555 A U 49 N3 ? ? A A 35 A U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 36 N6 ? ? ? 1_555 A U 49 O4 ? ? A A 35 A U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 36 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 36 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 36 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 37 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 37 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A U 39 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 38 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A U 39 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 38 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A U 40 N3 ? ? ? 1_555 A C 45 N3 ? ? A U 39 A C 44 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog80 hydrog ? ? A U 40 O4 ? ? ? 1_555 A C 45 N4 ? ? A U 39 A C 44 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog81 hydrog ? ? A U 41 O2 ? ? ? 1_555 A A 44 N6 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog82 hydrog ? ? A G 64 N1 ? ? ? 1_555 A U 87 O2 ? ? A G 63 A U 86 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog83 hydrog ? ? A G 64 O6 ? ? ? 1_555 A U 87 N3 ? ? A G 63 A U 86 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog84 hydrog ? ? A C 65 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 64 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 65 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 64 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 65 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 64 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 66 N3 ? ? ? 1_555 A G 85 N1 ? ? A C 65 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 66 N4 ? ? ? 1_555 A G 85 O6 ? ? A C 65 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 66 O2 ? ? ? 1_555 A G 85 N2 ? ? A C 65 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 67 N7 ? ? ? 1_555 A A 84 N6 ? ? A G 66 A A 83 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog91 hydrog ? ? A A 69 N6 ? ? ? 1_555 A A 84 N3 ? ? A A 68 A A 83 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog92 hydrog ? ? A G 70 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 69 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 70 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 69 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 70 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 69 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A A 71 N1 ? ? ? 1_555 A U 82 N3 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A A 71 N6 ? ? ? 1_555 A U 82 O4 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A A 72 N1 ? ? ? 1_555 A U 80 N3 ? ? A A 71 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A A 72 N6 ? ? ? 1_555 A U 80 O4 ? ? A A 71 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 72 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 72 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 72 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A U 74 N3 ? ? ? 1_555 A A 77 N7 ? ? A U 73 A A 76 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog103 hydrog ? ? A U 74 O2 ? ? ? 1_555 A A 77 N6 ? ? A U 73 A A 76 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog104 hydrog ? ? A U 78 N3 ? ? ? 1_555 A A 207 N7 ? ? A U 77 A A 206 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog105 hydrog ? ? A U 78 O4 ? ? ? 1_555 A A 207 N6 ? ? A U 77 A A 206 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog106 hydrog ? ? A U 81 O2 ? ? ? 1_555 A C 83 N4 ? ? A U 80 A C 82 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog107 hydrog ? ? A G 88 N1 ? ? ? 1_555 A C 123 N3 ? ? A G 87 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A G 88 N2 ? ? ? 1_555 A C 123 O2 ? ? A G 87 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A G 88 O6 ? ? ? 1_555 A C 123 N4 ? ? A G 87 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 89 N3 ? ? ? 1_555 A G 122 N1 ? ? A C 88 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 89 N4 ? ? ? 1_555 A G 122 O6 ? ? A C 88 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 89 O2 ? ? ? 1_555 A G 122 N2 ? ? A C 88 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A U 91 N3 ? ? ? 1_555 A A 121 N1 ? ? A U 90 A A 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A U 91 O4 ? ? ? 1_555 A A 121 N6 ? ? A U 90 A A 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A U 92 N3 ? ? ? 1_555 A A 120 N1 ? ? A U 91 A A 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A U 92 O4 ? ? ? 1_555 A A 120 N6 ? ? A U 91 A A 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A A 93 N1 ? ? ? 1_555 A U 119 N3 ? ? A A 92 A U 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A A 93 N6 ? ? ? 1_555 A U 119 O4 ? ? A A 92 A U 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A U 94 N3 ? ? ? 1_555 A A 118 N1 ? ? A U 93 A A 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A U 94 O4 ? ? ? 1_555 A A 118 N6 ? ? A U 93 A A 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A U 95 N3 ? ? ? 1_555 A A 117 N1 ? ? A U 94 A A 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A U 95 O4 ? ? ? 1_555 A A 117 N6 ? ? A U 94 A A 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A C 96 N3 ? ? ? 1_555 A G 116 N1 ? ? A C 95 A G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A C 96 N4 ? ? ? 1_555 A G 116 O6 ? ? A C 95 A G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A C 96 O2 ? ? ? 1_555 A G 116 N2 ? ? A C 95 A G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? A U 97 O4 ? ? ? 1_555 A C 115 N4 ? ? A U 96 A C 114 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog127 hydrog ? ? A U 98 N3 ? ? ? 1_555 A A 114 N1 ? ? A U 97 A A 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A U 98 O4 ? ? ? 1_555 A A 114 N6 ? ? A U 97 A A 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A A 99 N3 ? ? ? 1_555 A A 113 N6 ? ? A A 98 A A 112 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog130 hydrog ? ? A G 100 N1 ? ? ? 1_555 A C 112 N3 ? ? A G 99 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? A G 100 N2 ? ? ? 1_555 A C 112 O2 ? ? A G 99 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? A G 100 O6 ? ? ? 1_555 A C 112 N4 ? ? A G 99 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? A C 101 N3 ? ? ? 1_555 A G 111 N1 ? ? A C 100 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? A C 101 N4 ? ? ? 1_555 A G 111 O6 ? ? A C 100 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? A C 101 O2 ? ? ? 1_555 A G 111 N2 ? ? A C 100 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? A C 102 N3 ? ? ? 1_555 A G 110 N1 ? ? A C 101 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? A C 102 N4 ? ? ? 1_555 A G 110 O6 ? ? A C 101 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? A C 102 O2 ? ? ? 1_555 A G 110 N2 ? ? A C 101 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? A A 103 N1 ? ? ? 1_555 A U 109 N3 ? ? A A 102 A U 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? A A 103 N6 ? ? ? 1_555 A U 109 O4 ? ? A A 102 A U 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? A U 104 N3 ? ? ? 1_555 A A 107 N7 ? ? A U 103 A A 106 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog142 hydrog ? ? A U 104 O2 ? ? ? 1_555 A A 107 N6 ? ? A U 103 A A 106 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog143 hydrog ? ? A G 131 N2 ? ? ? 1_555 A A 183 N3 ? ? A G 130 A A 182 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog144 hydrog ? ? A A 143 N6 ? ? ? 1_555 A A 230 N1 ? ? A A 142 A A 229 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog145 hydrog ? ? A C 144 N3 ? ? ? 1_555 A G 229 N1 ? ? A C 143 A G 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? A C 144 N4 ? ? ? 1_555 A G 229 O6 ? ? A C 143 A G 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? A C 144 O2 ? ? ? 1_555 A G 229 N2 ? ? A C 143 A G 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? A C 145 N3 ? ? ? 1_555 A G 228 N1 ? ? A C 144 A G 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? A C 145 N4 ? ? ? 1_555 A G 228 O6 ? ? A C 144 A G 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? A C 145 O2 ? ? ? 1_555 A G 228 N2 ? ? A C 144 A G 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? A U 146 N3 ? ? ? 1_555 A A 227 N1 ? ? A U 145 A A 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? A U 146 O4 ? ? ? 1_555 A A 227 N6 ? ? A U 145 A A 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? A C 147 N3 ? ? ? 1_555 A G 226 N1 ? ? A C 146 A G 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? A C 147 N4 ? ? ? 1_555 A G 226 O6 ? ? A C 146 A G 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? A C 147 O2 ? ? ? 1_555 A G 226 N2 ? ? A C 146 A G 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? A U 148 N3 ? ? ? 1_555 A A 225 N1 ? ? A U 147 A A 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? A U 148 O4 ? ? ? 1_555 A A 225 N6 ? ? A U 147 A A 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? A G 149 N1 ? ? ? 1_555 A C 224 N3 ? ? A G 148 A C 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? A G 149 N2 ? ? ? 1_555 A C 224 O2 ? ? A G 148 A C 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? A G 149 O6 ? ? ? 1_555 A C 224 N4 ? ? A G 148 A C 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? A G 150 N2 ? ? ? 1_555 A A 223 N7 ? ? A G 149 A A 222 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog162 hydrog ? ? A A 151 N7 ? ? ? 1_555 A G 222 N2 ? ? A A 150 A G 221 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog163 hydrog ? ? A G 152 O6 ? ? ? 1_555 A G 221 N2 ? ? A G 151 A G 220 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog164 hydrog ? ? A A 153 N3 ? ? ? 1_555 A G 215 N2 ? ? A A 152 A G 214 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog165 hydrog ? ? A G 154 N1 ? ? ? 1_555 A C 170 N3 ? ? A G 153 A C 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog166 hydrog ? ? A G 154 N2 ? ? ? 1_555 A C 170 O2 ? ? A G 153 A C 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog167 hydrog ? ? A G 154 O6 ? ? ? 1_555 A C 170 N4 ? ? A G 153 A C 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog168 hydrog ? ? A A 156 N1 ? ? ? 1_555 A U 169 N3 ? ? A A 155 A U 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog169 hydrog ? ? A A 156 N6 ? ? ? 1_555 A U 169 O4 ? ? A A 155 A U 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog170 hydrog ? ? A C 157 N3 ? ? ? 1_555 A G 168 N1 ? ? A C 156 A G 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog171 hydrog ? ? A C 157 N4 ? ? ? 1_555 A G 168 O6 ? ? A C 156 A G 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog172 hydrog ? ? A C 157 O2 ? ? ? 1_555 A G 168 N2 ? ? A C 156 A G 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog173 hydrog ? ? A C 158 N3 ? ? ? 1_555 A G 167 N1 ? ? A C 157 A G 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog174 hydrog ? ? A C 158 N4 ? ? ? 1_555 A G 167 O6 ? ? A C 157 A G 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog175 hydrog ? ? A C 158 O2 ? ? ? 1_555 A G 167 N2 ? ? A C 157 A G 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog176 hydrog ? ? A G 159 N1 ? ? ? 1_555 A C 166 N3 ? ? A G 158 A C 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog177 hydrog ? ? A G 159 N2 ? ? ? 1_555 A C 166 O2 ? ? A G 158 A C 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog178 hydrog ? ? A G 159 O6 ? ? ? 1_555 A C 166 N4 ? ? A G 158 A C 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog179 hydrog ? ? A U 160 N3 ? ? ? 1_555 A U 165 O4 ? ? A U 159 A U 164 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog180 hydrog ? ? A U 160 O2 ? ? ? 1_555 A U 165 N3 ? ? A U 159 A U 164 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog181 hydrog ? ? A G 171 N1 ? ? ? 1_555 A C 216 N3 ? ? A G 170 A C 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog182 hydrog ? ? A G 171 N2 ? ? ? 1_555 A C 216 O2 ? ? A G 170 A C 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog183 hydrog ? ? A G 171 O6 ? ? ? 1_555 A C 216 N4 ? ? A G 170 A C 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog184 hydrog ? ? A C 172 N3 ? ? ? 1_555 A G 215 N1 ? ? A C 171 A G 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog185 hydrog ? ? A C 172 N4 ? ? ? 1_555 A G 215 O6 ? ? A C 171 A G 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog186 hydrog ? ? A C 172 O2 ? ? ? 1_555 A G 215 N2 ? ? A C 171 A G 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog187 hydrog ? ? A C 173 N3 ? ? ? 1_555 A G 214 N1 ? ? A C 172 A G 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog188 hydrog ? ? A C 173 N4 ? ? ? 1_555 A G 214 O6 ? ? A C 172 A G 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog189 hydrog ? ? A C 173 O2 ? ? ? 1_555 A G 214 N2 ? ? A C 172 A G 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog190 hydrog ? ? A G 174 N7 ? ? ? 1_555 A A 213 N6 ? ? A G 173 A A 212 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog191 hydrog ? ? A A 176 N6 ? ? ? 1_555 A A 213 N3 ? ? A A 175 A A 212 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog192 hydrog ? ? A G 177 N1 ? ? ? 1_555 A C 212 N3 ? ? A G 176 A C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog193 hydrog ? ? A G 177 N2 ? ? ? 1_555 A C 212 O2 ? ? A G 176 A C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog194 hydrog ? ? A G 177 O6 ? ? ? 1_555 A C 212 N4 ? ? A G 176 A C 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog195 hydrog ? ? A G 178 N1 ? ? ? 1_555 A C 210 N3 ? ? A G 177 A C 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog196 hydrog ? ? A G 178 N2 ? ? ? 1_555 A C 210 O2 ? ? A G 177 A C 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog197 hydrog ? ? A G 178 O6 ? ? ? 1_555 A C 210 N4 ? ? A G 177 A C 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog198 hydrog ? ? A A 179 N1 ? ? ? 1_555 A U 209 N3 ? ? A A 178 A U 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog199 hydrog ? ? A A 179 N6 ? ? ? 1_555 A U 209 O4 ? ? A A 178 A U 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog200 hydrog ? ? A G 180 N1 ? ? ? 1_555 A C 208 N3 ? ? A G 179 A C 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog201 hydrog ? ? A G 180 N2 ? ? ? 1_555 A C 208 O2 ? ? A G 179 A C 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog202 hydrog ? ? A G 180 O6 ? ? ? 1_555 A C 208 N4 ? ? A G 179 A C 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog203 hydrog ? ? A C 181 N3 ? ? ? 1_555 A A 206 N6 ? ? A C 180 A A 205 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog204 hydrog ? ? A C 181 N4 ? ? ? 1_555 A A 206 N7 ? ? A C 180 A A 205 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog205 hydrog ? ? A A 182 N7 ? ? ? 1_555 A G 204 N2 ? ? A A 181 A G 203 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog206 hydrog ? ? A A 183 N6 ? ? ? 1_555 A G 204 N3 ? ? A A 182 A G 203 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog207 hydrog ? ? A A 183 N7 ? ? ? 1_555 A G 204 N2 ? ? A A 182 A G 203 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog208 hydrog ? ? A G 184 N1 ? ? ? 1_555 A U 203 O2 ? ? A G 183 A U 202 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog209 hydrog ? ? A G 184 O6 ? ? ? 1_555 A U 203 N3 ? ? A G 183 A U 202 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog210 hydrog ? ? A C 185 N3 ? ? ? 1_555 A G 202 N1 ? ? A C 184 A G 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog211 hydrog ? ? A C 185 N4 ? ? ? 1_555 A G 202 O6 ? ? A C 184 A G 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog212 hydrog ? ? A C 185 O2 ? ? ? 1_555 A G 202 N2 ? ? A C 184 A G 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog213 hydrog ? ? A U 186 N3 ? ? ? 1_555 A A 201 N1 ? ? A U 185 A A 200 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog214 hydrog ? ? A U 186 O4 ? ? ? 1_555 A A 201 N6 ? ? A U 185 A A 200 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog215 hydrog ? ? A C 187 N3 ? ? ? 1_555 A G 200 N1 ? ? A C 186 A G 199 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog216 hydrog ? ? A C 187 N4 ? ? ? 1_555 A G 200 O6 ? ? A C 186 A G 199 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog217 hydrog ? ? A C 187 O2 ? ? ? 1_555 A G 200 N2 ? ? A C 186 A G 199 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog218 hydrog ? ? A U 188 N3 ? ? ? 1_555 A A 199 N1 ? ? A U 187 A A 198 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog219 hydrog ? ? A U 188 O4 ? ? ? 1_555 A A 199 N6 ? ? A U 187 A A 198 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog220 hydrog ? ? A G 189 N1 ? ? ? 1_555 A C 198 N3 ? ? A G 188 A C 197 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog221 hydrog ? ? A G 189 N2 ? ? ? 1_555 A C 198 O2 ? ? A G 188 A C 197 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog222 hydrog ? ? A G 189 O6 ? ? ? 1_555 A C 198 N4 ? ? A G 188 A C 197 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog223 hydrog ? ? A C 190 N3 ? ? ? 1_555 A G 197 N1 ? ? A C 189 A G 196 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog224 hydrog ? ? A C 190 N4 ? ? ? 1_555 A G 197 O6 ? ? A C 189 A G 196 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog225 hydrog ? ? A C 190 O2 ? ? ? 1_555 A G 197 N2 ? ? A C 189 A G 196 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog226 hydrog ? ? A G 191 N1 ? ? ? 1_555 A U 196 O2 ? ? A G 190 A U 195 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog227 hydrog ? ? A G 191 O6 ? ? ? 1_555 A U 196 N3 ? ? A G 190 A U 195 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog228 hydrog ? ? A C 210 N3 ? ? ? 1_555 A C 212 N4 ? ? A C 209 A C 211 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 69 ? A A 68 ? 1_555 MG ? I MG . ? A MG 308 ? 1_555 OP2 ? A G 70 ? A G 69 ? 1_555 104.6 ? 2 OP2 ? A C 212 ? A C 211 ? 1_555 MG ? F MG . ? A MG 305 ? 1_555 OP2 ? A A 213 ? A A 212 ? 1_555 112.0 ? # _pdbx_entry_details.entry_id 9N3J _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9N3J _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 6WLT _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id A _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 6WLT _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9N3J _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.27 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 207411 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '25mM MES (pH 6.0), 10mM MgCl2' _em_buffer.pH 6.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Apo structure of the glycine riboswitch with 10mM Magnesium' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9N3J _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2300 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details 15mA _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9N3J _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9N3J _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 0 ? A G 1 2 1 Y 1 A U 231 ? A U 232 3 1 Y 1 A G 232 ? A G 233 4 1 Y 1 A A 233 ? A A 234 5 1 Y 1 A A 234 ? A A 235 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 MG MG MG N N 111 U OP3 O N N 112 U P P N N 113 U OP1 O N N 114 U OP2 O N N 115 U "O5'" O N N 116 U "C5'" C N N 117 U "C4'" C N R 118 U "O4'" O N N 119 U "C3'" C N S 120 U "O3'" O N N 121 U "C2'" C N R 122 U "O2'" O N N 123 U "C1'" C N R 124 U N1 N N N 125 U C2 C N N 126 U O2 O N N 127 U N3 N N N 128 U C4 C N N 129 U O4 O N N 130 U C5 C N N 131 U C6 C N N 132 U HOP3 H N N 133 U HOP2 H N N 134 U "H5'" H N N 135 U "H5''" H N N 136 U "H4'" H N N 137 U "H3'" H N N 138 U "HO3'" H N N 139 U "H2'" H N N 140 U "HO2'" H N N 141 U "H1'" H N N 142 U H3 H N N 143 U H5 H N N 144 U H6 H N N 145 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2025-01-31 _em_admin.deposition_site RCSB _em_admin.entry_id 9N3J _em_admin.last_update 2026-08-05 _em_admin.map_release_date 2026-08-05 _em_admin.title 'Vibrio cholerae Glycine Riboswitch - Apo at 3.3A resolution' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 25 mM ? 1 MES 1 10 mM MgCl2 2 'Magnesium Chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 75.7 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 666 _em_entity_assembly_naturalsource.organism 'Vibrio cholerae' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 59 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 5819 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 850408 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.6.0 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.6.0 ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.95 ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.21.1_5286 ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? cryoSPARC 4.6.0 ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 4.6.0 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration 1.2 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9N3J 'double helix' 9N3J 'a-form double helix' 9N3J 'hairpin loop' 9N3J 'bulge loop' 9N3J 'mismatched base pair' 9N3J 'internal loop' 9N3J 'triple helix' 9N3J 'three-way junction' 9N3J 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 140 1_555 A C 4 1_555 0.217 -0.123 -0.174 1.081 13.491 1.222 1 A_G139:C3_A A 139 ? A 3 ? 19 1 1 A G 141 1_555 A C 3 1_555 -0.204 -0.359 -0.109 -4.818 -6.928 -2.455 2 A_G140:C2_A A 140 ? A 2 ? 19 1 1 A A 142 1_555 A U 2 1_555 0.409 -0.140 -0.422 -14.091 9.505 -11.654 3 A_A141:U1_A A 141 ? A 1 ? 20 1 1 A A 143 1_555 A A 230 1_555 -2.848 1.399 1.036 41.245 -1.431 3.041 4 A_A142:A229_A A 142 ? A 229 ? ? 1 1 A C 144 1_555 A G 229 1_555 -0.054 -0.104 0.188 20.749 -13.286 -3.364 5 A_C143:G228_A A 143 ? A 228 ? 19 1 1 A C 145 1_555 A G 228 1_555 0.050 -0.136 0.127 10.131 -13.110 -2.236 6 A_C144:G227_A A 144 ? A 227 ? 19 1 1 A U 146 1_555 A A 227 1_555 -0.046 0.074 0.731 3.845 1.860 -2.299 7 A_U145:A226_A A 145 ? A 226 ? 20 1 1 A C 147 1_555 A G 226 1_555 0.350 -0.015 0.308 12.301 -0.828 -4.403 8 A_C146:G225_A A 146 ? A 225 ? 19 1 1 A U 148 1_555 A A 225 1_555 -0.085 0.085 0.403 -1.010 7.292 7.734 9 A_U147:A224_A A 147 ? A 224 ? 20 1 1 A G 149 1_555 A C 224 1_555 -0.361 -0.007 -0.808 -6.432 -7.527 -0.059 10 A_G148:C223_A A 148 ? A 223 ? 19 1 1 A G 150 1_555 A A 223 1_555 7.434 -5.589 0.440 8.250 -20.791 -25.593 11 A_G149:A222_A A 149 ? A 222 ? ? ? 1 A A 151 1_555 A G 222 1_555 -7.141 -5.110 0.468 -25.067 -7.744 -20.096 12 A_A150:G221_A A 150 ? A 221 ? ? ? 1 A G 152 1_555 A G 221 1_555 -4.341 1.452 1.219 -4.028 -20.393 -36.197 13 A_G151:G220_A A 151 ? A 220 ? ? 1 1 A G 8 1_555 A A 139 1_555 6.802 -4.341 1.508 17.520 5.762 4.005 14 A_G7:A138_A A 7 ? A 138 ? 11 10 1 A A 9 1_555 A G 138 1_555 -6.879 -5.091 0.051 -31.701 -4.553 -11.851 15 A_A8:G137_A A 8 ? A 137 ? 11 10 1 A A 10 1_555 A G 137 1_555 -6.505 -4.357 -1.482 -7.393 -22.148 2.164 16 A_A9:G136_A A 9 ? A 136 ? 11 5 1 A G 11 1_555 A U 136 1_555 -1.980 -0.613 0.135 2.721 -9.393 -5.092 17 A_G10:U135_A A 10 ? A 135 ? 28 1 1 A A 12 1_555 A U 135 1_555 0.169 0.008 -0.455 -3.401 -7.732 -5.903 18 A_A11:U134_A A 11 ? A 134 ? 20 1 1 A C 13 1_555 A G 134 1_555 0.033 -0.080 -0.413 12.647 -8.353 0.083 19 A_C12:G133_A A 12 ? A 133 ? 19 1 1 A U 14 1_555 A A 133 1_555 0.131 0.032 -0.265 13.507 -7.541 4.201 20 A_U13:A132_A A 13 ? A 132 ? 20 1 1 A G 15 1_555 A U 132 1_555 -2.448 -0.530 -0.222 12.618 -15.040 -3.730 21 A_G14:U131_A A 14 ? A 131 ? 28 1 1 A C 16 1_555 A G 131 1_555 0.158 0.129 -0.948 18.034 -18.734 0.684 22 A_C15:G130_A A 15 ? A 130 ? 19 1 1 A A 17 1_555 A U 130 1_555 -0.048 0.085 -1.336 -21.814 -13.848 12.702 23 A_A16:U129_A A 16 ? A 129 ? 20 1 1 A G 18 1_555 A C 129 1_555 -0.232 -0.050 -0.896 -14.621 -6.956 -2.384 24 A_G17:C128_A A 17 ? A 128 ? 19 1 1 A G 19 1_555 A A 128 1_555 7.544 -5.367 0.171 8.911 -13.421 -28.773 25 A_G18:A127_A A 18 ? A 127 ? ? ? 1 A A 20 1_555 A G 127 1_555 -7.299 -5.242 0.286 -23.218 -15.916 -22.720 26 A_A19:G126_A A 19 ? A 126 ? ? 10 1 A G 21 1_555 A G 126 1_555 -4.852 0.933 1.072 0.400 -22.647 -30.727 27 A_G20:G125_A A 20 ? A 125 ? ? 1 1 A A 44 1_555 A U 41 1_555 -6.358 -5.053 0.123 -24.048 1.156 -13.406 28 A_A43:U40_A A 43 ? A 40 ? ? 6 1 A C 45 1_555 A U 40 1_555 1.723 -1.512 0.398 -7.978 5.196 -7.687 29 A_C44:U39_A A 44 ? A 39 ? 18 1 1 A A 46 1_555 A U 39 1_555 -0.395 -0.041 0.290 7.451 -24.816 -5.229 30 A_A45:U38_A A 45 ? A 38 ? 20 1 1 A U 47 1_555 A A 38 1_555 0.281 -0.074 0.139 2.807 -24.777 -5.776 31 A_U46:A37_A A 46 ? A 37 ? 20 1 1 A C 48 1_555 A G 37 1_555 0.202 -0.112 0.346 -1.995 -16.555 -3.825 32 A_C47:G36_A A 47 ? A 36 ? 19 1 1 A U 49 1_555 A A 36 1_555 0.411 -0.218 0.304 -0.317 -14.125 -7.423 33 A_U48:A35_A A 48 ? A 35 ? 20 1 1 A G 50 1_555 A C 35 1_555 -0.166 -0.243 0.379 2.249 -11.622 -5.216 34 A_G49:C34_A A 49 ? A 34 ? 19 1 1 A A 51 1_555 A C 34 1_555 -6.710 -4.084 -0.246 24.471 -1.513 -9.853 35 A_A50:C33_A A 50 ? A 33 ? ? 6 1 A G 52 1_555 A A 33 1_555 0.626 0.986 -1.369 24.353 -22.880 -15.293 36 A_G51:A32_A A 51 ? A 32 ? 8 1 1 A C 54 1_555 A A 32 1_555 1.274 -0.407 0.611 -3.991 -31.718 9.897 37 A_C53:A31_A A 53 ? A 31 ? ? 1 1 A A 56 1_555 A U 31 1_555 -0.116 0.088 -0.325 -8.865 -8.678 -1.718 38 A_A55:U30_A A 55 ? A 30 ? 20 1 1 A A 57 1_555 A U 30 1_555 -0.250 -0.012 0.029 -7.861 -19.596 -5.761 39 A_A56:U29_A A 56 ? A 29 ? 20 1 1 A U 58 1_555 A G 29 1_555 2.372 -0.745 0.142 -5.864 -11.212 -0.032 40 A_U57:G28_A A 57 ? A 28 ? 28 1 1 A A 59 1_555 A U 28 1_555 -0.434 -0.351 0.140 2.804 1.320 -0.154 41 A_A58:U27_A A 58 ? A 27 ? 20 1 1 A A 60 1_555 A U 27 1_555 0.263 -0.111 0.295 22.477 -14.154 -4.169 42 A_A59:U26_A A 59 ? A 26 ? 20 1 1 A C 61 1_555 A G 26 1_555 0.533 -0.100 0.344 13.615 -6.979 1.101 43 A_C60:G25_A A 60 ? A 25 ? 19 1 1 A C 62 1_555 A G 25 1_555 0.891 -0.483 0.411 4.388 -3.358 2.335 44 A_C61:G24_A A 61 ? A 24 ? 19 1 1 A C 63 1_555 A G 23 1_555 0.687 -0.145 -0.028 16.754 -14.616 2.702 45 A_C62:G22_A A 62 ? A 22 ? 19 1 1 A G 64 1_555 A U 87 1_555 -2.187 -0.491 -0.179 5.550 -16.974 -0.661 46 A_G63:U86_A A 63 ? A 86 ? 28 1 1 A C 65 1_555 A G 86 1_555 0.091 0.172 -0.260 15.674 -28.344 4.256 47 A_C64:G85_A A 64 ? A 85 ? 19 1 1 A C 66 1_555 A G 85 1_555 0.272 -0.054 -0.077 1.116 -12.906 -2.510 48 A_C65:G84_A A 65 ? A 84 ? 19 1 1 A G 67 1_555 A A 84 1_555 2.079 -6.161 0.363 -2.981 -13.013 109.553 49 A_G66:A83_A A 66 ? A 83 ? ? 3 1 A G 70 1_555 A C 83 1_555 0.236 -0.135 -0.334 -15.564 -2.590 -7.906 50 A_G69:C82_A A 69 ? A 82 ? 19 1 1 A A 71 1_555 A U 82 1_555 -0.003 -0.024 0.577 18.234 13.279 9.220 51 A_A70:U81_A A 70 ? A 81 ? 20 1 1 A A 72 1_555 A U 80 1_555 -0.001 0.120 -0.547 -10.117 -19.495 9.438 52 A_A71:U79_A A 71 ? A 79 ? 20 1 1 A G 73 1_555 A C 79 1_555 -0.483 -0.355 0.075 -1.468 1.507 -4.008 53 A_G72:C78_A A 72 ? A 78 ? 19 1 1 A U 74 1_555 A A 77 1_555 4.965 -3.850 0.249 34.145 7.893 -65.298 54 A_U73:A76_A A 73 ? A 76 ? 24 4 1 A U 78 1_555 A A 207 1_555 -1.659 3.169 1.040 22.347 -1.976 -64.222 55 A_U77:A206_A A 77 ? A 206 ? 23 3 1 A G 88 1_555 A C 123 1_555 -1.000 -0.255 0.642 6.683 -2.261 3.603 56 A_G87:C122_A A 87 ? A 122 ? 19 1 1 A C 89 1_555 A G 122 1_555 0.251 -0.057 -0.077 3.416 -2.023 1.814 57 A_C88:G121_A A 88 ? A 121 ? 19 1 1 A U 91 1_555 A A 121 1_555 -0.443 -0.128 0.443 -20.825 -8.317 -2.360 58 A_U90:A120_A A 90 ? A 120 ? 20 1 1 A U 92 1_555 A A 120 1_555 -0.068 -0.401 0.348 -3.497 -12.959 -9.154 59 A_U91:A119_A A 91 ? A 119 ? 20 1 1 A A 93 1_555 A U 119 1_555 0.411 -0.182 -0.618 -14.370 -21.127 1.301 60 A_A92:U118_A A 92 ? A 118 ? 20 1 1 A U 94 1_555 A A 118 1_555 -0.294 -0.322 0.456 -14.279 -39.535 -0.064 61 A_U93:A117_A A 93 ? A 117 ? 20 1 1 A U 95 1_555 A A 117 1_555 -0.103 -0.348 0.212 -14.712 -26.358 -7.087 62 A_U94:A116_A A 94 ? A 116 ? 20 1 1 A C 96 1_555 A G 116 1_555 0.445 -0.455 0.258 1.810 -7.691 -1.999 63 A_C95:G115_A A 95 ? A 115 ? 19 1 1 A U 97 1_555 A C 115 1_555 -1.393 -0.025 -2.432 -8.283 -36.459 -44.296 64 A_U96:C114_A A 96 ? A 114 ? ? ? 1 A U 98 1_555 A A 114 1_555 -0.136 -0.243 -0.003 -10.903 -29.752 -0.387 65 A_U97:A113_A A 97 ? A 113 ? 20 1 1 A A 99 1_555 A A 113 1_555 6.387 -4.099 0.557 -11.948 -19.663 -4.870 66 A_A98:A112_A A 98 ? A 112 ? ? 10 1 A G 100 1_555 A C 112 1_555 -0.772 -0.267 0.202 1.378 -7.125 4.539 67 A_G99:C111_A A 99 ? A 111 ? 19 1 1 A C 101 1_555 A G 111 1_555 0.228 -0.212 0.085 13.898 -16.420 -2.299 68 A_C100:G110_A A 100 ? A 110 ? 19 1 1 A C 102 1_555 A G 110 1_555 0.560 -0.264 0.100 13.502 -23.360 -0.473 69 A_C101:G109_A A 101 ? A 109 ? 19 1 1 A A 103 1_555 A U 109 1_555 0.650 -0.096 0.318 14.073 -34.637 0.460 70 A_A102:U108_A A 102 ? A 108 ? 20 1 1 A U 104 1_555 A A 107 1_555 4.362 -2.033 0.537 20.234 -2.292 -96.358 71 A_U103:A106_A A 103 ? A 106 ? 24 4 1 A U 165 1_555 A U 160 1_555 -3.246 -2.181 0.604 -18.853 -14.531 6.382 72 A_U164:U159_A A 164 ? A 159 ? 16 1 1 A C 166 1_555 A G 159 1_555 0.684 -0.496 -0.193 -0.827 -18.793 -6.486 73 A_C165:G158_A A 165 ? A 158 ? 19 1 1 A G 167 1_555 A C 158 1_555 -0.264 -0.325 0.067 3.193 -4.058 0.892 74 A_G166:C157_A A 166 ? A 157 ? 19 1 1 A G 168 1_555 A C 157 1_555 -0.581 -0.536 0.992 4.512 6.229 -8.194 75 A_G167:C156_A A 167 ? A 156 ? 19 1 1 A U 169 1_555 A A 156 1_555 -0.306 0.052 1.142 -2.080 -0.221 -13.063 76 A_U168:A155_A A 168 ? A 155 ? 20 1 1 A C 170 1_555 A G 154 1_555 0.805 -0.274 0.411 3.637 1.645 1.645 77 A_C169:G153_A A 169 ? A 153 ? 19 1 1 A G 171 1_555 A C 216 1_555 -0.578 0.174 0.302 15.679 -4.606 4.390 78 A_G170:C215_A A 170 ? A 215 ? 19 1 1 A C 172 1_555 A G 215 1_555 0.156 0.147 -0.200 10.245 -19.244 6.261 79 A_C171:G214_A A 171 ? A 214 ? 19 1 1 A C 173 1_555 A G 214 1_555 0.084 -0.024 -0.583 5.194 -18.117 0.034 80 A_C172:G213_A A 172 ? A 213 ? 19 1 1 A A 176 1_555 A A 213 1_555 -6.542 -4.552 -0.222 4.875 -6.299 -18.747 81 A_A175:A212_A A 175 ? A 212 ? ? 10 1 A G 177 1_555 A C 212 1_555 -0.193 -0.084 -1.004 -10.352 2.497 -6.879 82 A_G176:C211_A A 176 ? A 211 ? 19 1 1 A G 178 1_555 A C 210 1_555 0.157 0.032 0.175 1.584 -13.880 -4.461 83 A_G177:C209_A A 177 ? A 209 ? 19 1 1 A A 179 1_555 A U 209 1_555 -0.061 0.184 -0.331 -8.430 -22.170 6.553 84 A_A178:U208_A A 178 ? A 208 ? 20 1 1 A G 180 1_555 A C 208 1_555 -0.135 -0.116 0.257 -5.184 -21.311 -0.912 85 A_G179:C207_A A 179 ? A 207 ? 19 1 1 A C 181 1_555 A A 206 1_555 3.296 -0.114 -0.834 24.228 -11.216 -87.342 86 A_C180:A205_A A 180 ? A 205 ? 25 4 1 A A 183 1_555 A G 204 1_555 -6.875 -4.712 1.622 14.842 -18.398 -9.597 87 A_A182:G203_A A 182 ? A 203 ? 11 10 1 A G 184 1_555 A U 203 1_555 -2.556 -0.497 0.666 20.301 -2.796 -1.876 88 A_G183:U202_A A 183 ? A 202 ? 28 1 1 A C 185 1_555 A G 202 1_555 -0.128 0.286 -0.639 28.534 -19.453 4.821 89 A_C184:G201_A A 184 ? A 201 ? 19 1 1 A U 186 1_555 A A 201 1_555 -0.070 -0.160 0.325 2.907 5.656 -5.982 90 A_U185:A200_A A 185 ? A 200 ? 20 1 1 A C 187 1_555 A G 200 1_555 0.082 -0.094 0.735 -6.846 2.325 1.962 91 A_C186:G199_A A 186 ? A 199 ? 19 1 1 A U 188 1_555 A A 199 1_555 -0.080 -0.238 -0.098 -1.215 -11.862 -1.604 92 A_U187:A198_A A 187 ? A 198 ? 20 1 1 A G 189 1_555 A C 198 1_555 0.239 -0.249 -0.579 -10.590 -4.695 -3.523 93 A_G188:C197_A A 188 ? A 197 ? 19 1 1 A C 190 1_555 A G 197 1_555 -0.054 -0.325 0.077 1.678 -18.275 -1.885 94 A_C189:G196_A A 189 ? A 196 ? 19 1 1 A G 191 1_555 A U 196 1_555 -2.470 -0.392 -0.179 9.025 -1.254 3.059 95 A_G190:U195_A A 190 ? A 195 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 140 1_555 A C 4 1_555 A G 141 1_555 A C 3 1_555 -0.209 -2.008 3.375 -1.668 4.778 29.034 -4.954 0.060 3.020 9.440 3.295 29.462 1 AA_G139G140:C2C3_AA A 139 ? A 3 ? A 140 ? A 2 ? 1 A G 141 1_555 A C 3 1_555 A A 142 1_555 A U 2 1_555 -0.178 -2.078 3.818 -2.665 -3.861 38.589 -2.559 -0.122 4.002 -5.815 4.014 38.862 2 AA_G140A141:U1C2_AA A 140 ? A 2 ? A 141 ? A 1 ? 1 A A 142 1_555 A U 2 1_555 A A 143 1_555 A A 230 1_555 3.093 -2.617 1.922 -22.853 0.974 34.585 -3.744 -5.142 -0.099 1.458 34.207 41.271 3 AA_A141A142:A229U1_AA A 141 ? A 1 ? A 142 ? A 229 ? 1 A A 143 1_555 A A 230 1_555 A C 144 1_555 A G 229 1_555 -0.447 -1.645 3.872 -1.508 5.502 44.539 -2.731 0.428 3.666 7.224 1.980 44.884 4 AA_A142C143:G228A229_AA A 142 ? A 229 ? A 143 ? A 228 ? 1 A C 144 1_555 A G 229 1_555 A C 145 1_555 A G 228 1_555 -0.153 -2.058 3.397 0.391 4.603 36.671 -3.868 0.294 3.123 7.281 -0.618 36.951 5 AA_C143C144:G227G228_AA A 143 ? A 228 ? A 144 ? A 227 ? 1 A C 145 1_555 A G 228 1_555 A U 146 1_555 A A 227 1_555 -0.186 -1.975 3.369 -4.103 5.344 29.609 -4.829 -0.454 2.973 10.291 7.899 30.349 6 AA_C144U145:A226G227_AA A 144 ? A 227 ? A 145 ? A 226 ? 1 A U 146 1_555 A A 227 1_555 A C 147 1_555 A G 226 1_555 0.123 -1.641 2.898 4.135 2.465 35.162 -3.008 0.326 2.777 4.057 -6.805 35.480 7 AA_U145C146:G225A226_AA A 145 ? A 226 ? A 146 ? A 225 ? 1 A C 147 1_555 A G 226 1_555 A U 148 1_555 A A 225 1_555 0.569 -1.931 3.417 -1.044 15.579 28.824 -5.856 -1.173 2.103 28.785 1.929 32.702 8 AA_C146U147:A224G225_AA A 146 ? A 225 ? A 147 ? A 224 ? 1 A U 148 1_555 A A 225 1_555 A G 149 1_555 A C 224 1_555 -0.878 -1.917 3.077 6.232 14.373 31.518 -4.894 2.200 1.854 24.647 -10.687 35.108 9 AA_U147G148:C223A224_AA A 147 ? A 224 ? A 148 ? A 223 ? 1 A G 149 1_555 A C 224 1_555 A G 150 1_555 A A 223 1_555 -1.941 -0.836 3.317 -3.013 9.025 65.480 -1.134 1.657 3.267 8.298 2.770 66.092 10 AA_G148G149:A222C223_AA A 148 ? A 223 ? A 149 ? A 222 ? 1 A G 150 1_555 A A 223 1_555 A A 151 1_555 A G 222 1_555 0.151 0.321 5.801 -4.291 12.381 -34.360 -3.500 -0.796 5.355 -20.076 -6.958 -36.704 11 AA_G149A150:G221A222_AA A 149 ? A 222 ? A 150 ? A 221 ? 1 A A 151 1_555 A G 222 1_555 A G 152 1_555 A G 221 1_555 -1.122 -1.064 3.178 3.339 -5.586 50.139 -0.859 1.546 3.195 -6.559 -3.921 50.533 12 AA_A150G151:G220G221_AA A 150 ? A 221 ? A 151 ? A 220 ? 1 A G 8 1_555 A A 139 1_555 A A 9 1_555 A G 138 1_555 -1.798 -1.677 4.195 -6.859 -5.627 -13.933 9.957 -11.281 2.232 20.679 -25.208 -16.506 13 AA_G7A8:G137A138_AA A 7 ? A 138 ? A 8 ? A 137 ? 1 A A 9 1_555 A G 138 1_555 A A 10 1_555 A G 137 1_555 -1.080 0.069 2.896 -15.409 11.108 27.479 -1.693 -0.631 2.913 20.560 28.523 33.302 14 AA_A8A9:G136G137_AA A 8 ? A 137 ? A 9 ? A 136 ? 1 A A 10 1_555 A G 137 1_555 A G 11 1_555 A U 136 1_555 -0.331 -0.913 3.286 -22.220 -2.664 58.724 -0.755 -0.730 3.249 -2.615 21.815 62.487 15 AA_A9G10:U135G136_AA A 9 ? A 136 ? A 10 ? A 135 ? 1 A G 11 1_555 A U 136 1_555 A A 12 1_555 A U 135 1_555 -1.024 -2.136 3.644 -1.534 -4.048 34.918 -2.836 1.429 3.899 -6.713 2.544 35.177 16 AA_G10A11:U134U135_AA A 10 ? A 135 ? A 11 ? A 134 ? 1 A A 12 1_555 A U 135 1_555 A C 13 1_555 A G 134 1_555 0.192 -1.325 2.750 -0.401 3.063 33.031 -2.743 -0.391 2.618 5.373 0.704 33.171 17 AA_A11C12:G133U134_AA A 11 ? A 134 ? A 12 ? A 133 ? 1 A C 13 1_555 A G 134 1_555 A U 14 1_555 A A 133 1_555 0.050 -1.389 3.198 2.078 11.820 30.368 -4.332 0.238 2.496 21.537 -3.786 32.602 18 AA_C12U13:A132G133_AA A 12 ? A 133 ? A 13 ? A 132 ? 1 A U 14 1_555 A A 133 1_555 A G 15 1_555 A U 132 1_555 -0.267 -1.611 3.113 -1.845 14.743 21.633 -6.785 0.184 1.701 34.522 4.320 26.194 19 AA_U13G14:U131A132_AA A 13 ? A 132 ? A 14 ? A 131 ? 1 A G 15 1_555 A U 132 1_555 A C 16 1_555 A G 131 1_555 -0.119 -1.072 3.005 2.052 11.583 41.222 -2.484 0.342 2.616 16.062 -2.846 42.797 20 AA_G14C15:G130U131_AA A 14 ? A 131 ? A 15 ? A 130 ? 1 A C 16 1_555 A G 131 1_555 A A 17 1_555 A U 130 1_555 0.677 -1.351 4.670 1.239 23.363 27.103 -6.605 -0.872 2.728 41.407 -2.196 35.660 21 AA_C15A16:U129G130_AA A 15 ? A 130 ? A 16 ? A 129 ? 1 A A 17 1_555 A U 130 1_555 A G 18 1_555 A C 129 1_555 -1.284 -1.315 3.085 -8.502 13.791 28.674 -4.485 0.940 2.487 25.443 15.685 32.851 22 AA_A16G17:C128U129_AA A 16 ? A 129 ? A 17 ? A 128 ? 1 A G 18 1_555 A C 129 1_555 A G 19 1_555 A A 128 1_555 -2.252 -0.983 2.980 -2.208 9.326 63.519 -1.287 2.035 2.895 8.806 2.085 64.163 23 AA_G17G18:A127C128_AA A 17 ? A 128 ? A 18 ? A 127 ? 1 A G 19 1_555 A A 128 1_555 A A 20 1_555 A G 127 1_555 0.257 0.452 5.847 -7.533 14.965 -32.250 -4.461 -1.467 5.091 -24.951 -12.560 -36.239 24 AA_G18A19:G126A127_AA A 18 ? A 127 ? A 19 ? A 126 ? 1 A A 20 1_555 A G 127 1_555 A G 21 1_555 A G 126 1_555 -1.104 -1.189 3.172 3.684 -8.185 45.243 -0.825 1.724 3.234 -10.517 -4.733 46.079 25 AA_A19G20:G125G126_AA A 19 ? A 126 ? A 20 ? A 125 ? 1 A A 44 1_555 A U 41 1_555 A C 45 1_555 A U 40 1_555 -1.605 -0.917 2.498 0.738 8.935 60.210 -1.225 1.612 2.335 8.853 -0.731 60.812 26 AA_A43C44:U39U40_AA A 43 ? A 40 ? A 44 ? A 39 ? 1 A C 45 1_555 A U 40 1_555 A A 46 1_555 A U 39 1_555 0.993 -1.242 2.483 9.200 12.384 26.132 -4.205 -0.544 1.946 24.827 -18.443 30.278 27 AA_C44A45:U38U39_AA A 44 ? A 39 ? A 45 ? A 38 ? 1 A A 46 1_555 A U 39 1_555 A U 47 1_555 A A 38 1_555 -0.007 -1.576 3.085 -0.057 -3.074 39.269 -1.988 0.004 3.194 -4.566 0.085 39.385 28 AA_A45U46:A37U38_AA A 45 ? A 38 ? A 46 ? A 37 ? 1 A U 47 1_555 A A 38 1_555 A C 48 1_555 A G 37 1_555 0.139 -1.566 2.946 -0.217 6.808 34.598 -3.451 -0.257 2.600 11.311 0.360 35.242 29 AA_U46C47:G36A37_AA A 46 ? A 37 ? A 47 ? A 36 ? 1 A C 48 1_555 A G 37 1_555 A U 49 1_555 A A 36 1_555 0.037 -1.566 2.816 1.541 4.177 35.250 -3.076 0.128 2.618 6.863 -2.532 35.521 30 AA_C47U48:A35G36_AA A 47 ? A 36 ? A 48 ? A 35 ? 1 A U 49 1_555 A A 36 1_555 A G 50 1_555 A C 35 1_555 0.098 -1.856 2.616 -0.585 9.814 31.173 -4.520 -0.248 1.955 17.718 1.056 32.649 31 AA_U48G49:C34A35_AA A 48 ? A 35 ? A 49 ? A 34 ? 1 A G 50 1_555 A C 35 1_555 A A 51 1_555 A C 34 1_555 0.747 -2.659 2.208 -12.159 8.434 -14.403 3.903 -2.997 3.066 -26.223 -37.806 -20.622 32 AA_G49A50:C33C34_AA A 49 ? A 34 ? A 50 ? A 33 ? 1 A A 51 1_555 A C 34 1_555 A G 52 1_555 A A 33 1_555 -0.476 -0.175 3.398 3.848 9.654 73.578 -0.458 0.519 3.333 8.021 -3.197 74.205 33 AA_A50G51:A32C33_AA A 50 ? A 33 ? A 51 ? A 32 ? 1 A G 52 1_555 A A 33 1_555 A C 54 1_555 A A 32 1_555 -0.521 -1.443 4.970 2.466 -5.813 55.652 -1.025 0.772 5.060 -6.204 -2.632 55.981 34 AA_G51C53:A31A32_AA A 51 ? A 32 ? A 53 ? A 31 ? 1 A C 54 1_555 A A 32 1_555 A A 56 1_555 A U 31 1_555 -3.230 -0.657 3.137 8.055 11.133 50.611 -1.384 4.125 2.446 12.754 -9.228 52.324 35 AA_C53A55:U30A31_AA A 53 ? A 31 ? A 55 ? A 30 ? 1 A A 56 1_555 A U 31 1_555 A A 57 1_555 A U 30 1_555 -0.203 -1.537 3.022 -1.806 4.273 30.358 -3.653 0.066 2.792 8.100 3.423 30.702 36 AA_A55A56:U29U30_AA A 55 ? A 30 ? A 56 ? A 29 ? 1 A A 57 1_555 A U 30 1_555 A U 58 1_555 A G 29 1_555 0.265 -1.372 3.056 2.367 5.344 46.407 -2.136 -0.154 2.900 6.750 -2.990 46.753 37 AA_A56U57:G28U29_AA A 56 ? A 29 ? A 57 ? A 28 ? 1 A U 58 1_555 A G 29 1_555 A A 59 1_555 A U 28 1_555 0.362 -1.788 2.524 4.384 11.439 19.489 -7.063 0.078 1.331 30.233 -11.586 22.988 38 AA_U57A58:U27G28_AA A 57 ? A 28 ? A 58 ? A 27 ? 1 A A 59 1_555 A U 28 1_555 A A 60 1_555 A U 27 1_555 0.083 -1.249 2.695 1.179 0.519 33.079 -2.264 0.019 2.677 0.910 -2.071 33.103 39 AA_A58A59:U26U27_AA A 58 ? A 27 ? A 59 ? A 26 ? 1 A A 60 1_555 A U 27 1_555 A C 61 1_555 A G 26 1_555 0.530 -1.702 3.486 -0.898 4.032 34.254 -3.516 -1.038 3.256 6.814 1.519 34.494 40 AA_A59C60:G25U26_AA A 59 ? A 26 ? A 60 ? A 25 ? 1 A C 61 1_555 A G 26 1_555 A C 62 1_555 A G 25 1_555 0.006 -1.985 3.271 -0.257 5.595 34.369 -4.130 -0.048 2.921 9.391 0.431 34.809 41 AA_C60C61:G24G25_AA A 60 ? A 25 ? A 61 ? A 24 ? 1 A C 62 1_555 A G 25 1_555 A C 63 1_555 A G 23 1_555 -0.168 -2.077 2.658 3.044 3.640 31.410 -4.312 0.740 2.382 6.676 -5.583 31.757 42 AA_C61C62:G22G24_AA A 61 ? A 24 ? A 62 ? A 22 ? 1 A C 63 1_555 A G 23 1_555 A G 64 1_555 A U 87 1_555 1.859 -1.389 3.873 -2.350 3.712 36.528 -2.780 -3.313 3.597 5.895 3.733 36.782 43 AA_C62G63:U86G22_AA A 62 ? A 22 ? A 63 ? A 86 ? 1 A G 64 1_555 A U 87 1_555 A C 65 1_555 A G 86 1_555 0.097 -1.331 2.926 -2.422 3.148 42.596 -2.102 -0.346 2.816 4.322 3.325 42.772 44 AA_G63C64:G85U86_AA A 63 ? A 86 ? A 64 ? A 85 ? 1 A C 65 1_555 A G 86 1_555 A C 66 1_555 A G 85 1_555 -0.312 -1.656 3.682 1.164 5.192 35.149 -3.539 0.696 3.399 8.537 -1.913 35.537 45 AA_C64C65:G84G85_AA A 64 ? A 85 ? A 65 ? A 84 ? 1 A C 66 1_555 A G 85 1_555 A G 67 1_555 A A 84 1_555 0.884 -3.287 -0.192 -166.740 5.498 134.290 -1.643 -0.367 -0.560 2.766 83.883 174.895 46 AA_C65G66:A83G84_AA A 65 ? A 84 ? A 66 ? A 83 ? 1 A G 70 1_555 A C 83 1_555 A A 71 1_555 A U 82 1_555 1.609 -1.928 2.337 -10.945 -9.860 29.031 -2.194 -4.268 2.137 -18.260 20.270 32.483 47 AA_G69A70:U81C82_AA A 69 ? A 82 ? A 70 ? A 81 ? 1 A A 71 1_555 A U 82 1_555 A A 72 1_555 A U 80 1_555 1.933 -1.668 4.025 4.535 22.733 50.645 -3.349 -1.770 3.214 25.124 -5.012 55.378 48 AA_A70A71:U79U81_AA A 70 ? A 81 ? A 71 ? A 79 ? 1 A A 72 1_555 A U 80 1_555 A G 73 1_555 A C 79 1_555 -0.760 -1.719 2.946 -11.214 6.417 32.313 -3.756 -0.259 2.676 10.997 19.218 34.736 49 AA_A71G72:C78U79_AA A 71 ? A 79 ? A 72 ? A 78 ? 1 A G 73 1_555 A C 79 1_555 A U 74 1_555 A A 77 1_555 -1.633 -1.440 2.619 0.419 5.618 73.011 -1.350 1.380 2.510 4.715 -0.352 73.198 50 AA_G72U73:A76C78_AA A 72 ? A 78 ? A 73 ? A 76 ? 1 A G 88 1_555 A C 123 1_555 A C 89 1_555 A G 122 1_555 0.006 -2.134 3.244 4.974 4.982 36.873 -3.937 0.609 2.917 7.790 -7.776 37.516 51 AA_G87C88:G121C122_AA A 87 ? A 122 ? A 88 ? A 121 ? 1 A C 89 1_555 A G 122 1_555 A U 91 1_555 A A 121 1_555 -1.449 -2.551 6.184 20.721 8.361 38.634 -4.713 5.235 4.300 11.539 -28.600 44.415 52 AA_C88U90:A120G121_AA A 88 ? A 121 ? A 90 ? A 120 ? 1 A U 91 1_555 A A 121 1_555 A U 92 1_555 A A 120 1_555 0.088 -1.644 2.960 2.964 -3.684 33.196 -2.285 0.302 3.115 -6.408 -5.155 33.522 53 AA_U90U91:A119A120_AA A 90 ? A 120 ? A 91 ? A 119 ? 1 A U 92 1_555 A A 120 1_555 A A 93 1_555 A U 119 1_555 0.018 -1.732 3.344 7.548 18.174 29.779 -5.187 0.947 1.952 31.417 -13.047 35.570 54 AA_U91A92:U118A119_AA A 91 ? A 119 ? A 92 ? A 118 ? 1 A A 93 1_555 A U 119 1_555 A U 94 1_555 A A 118 1_555 1.801 -1.186 3.309 -0.983 12.148 16.400 -8.141 -5.471 1.877 36.695 2.969 20.408 55 AA_A92U93:A117U118_AA A 92 ? A 118 ? A 93 ? A 117 ? 1 A U 94 1_555 A A 118 1_555 A U 95 1_555 A A 117 1_555 -0.220 -0.856 3.260 0.077 20.551 38.177 -3.063 0.306 2.505 29.002 -0.109 43.175 56 AA_U93U94:A116A117_AA A 93 ? A 117 ? A 94 ? A 116 ? 1 A U 95 1_555 A A 117 1_555 A C 96 1_555 A G 116 1_555 1.043 -1.491 2.924 1.821 2.593 29.871 -3.349 -1.683 2.844 5.012 -3.520 30.034 57 AA_U94C95:G115A116_AA A 94 ? A 116 ? A 95 ? A 115 ? 1 A C 96 1_555 A G 116 1_555 A U 97 1_555 A C 115 1_555 -3.454 -1.686 3.447 5.328 16.113 26.481 -5.613 7.212 1.494 31.406 -10.385 31.371 58 AA_C95U96:C114G115_AA A 95 ? A 115 ? A 96 ? A 114 ? 1 A U 97 1_555 A C 115 1_555 A U 98 1_555 A A 114 1_555 3.096 -0.974 3.343 -6.476 8.968 38.585 -2.360 -5.196 2.532 13.243 9.563 40.081 59 AA_U96U97:A113C114_AA A 96 ? A 114 ? A 97 ? A 113 ? 1 A U 98 1_555 A A 114 1_555 A A 99 1_555 A A 113 1_555 0.270 0.441 3.667 3.050 11.144 72.809 -0.035 -0.115 3.701 9.331 -2.554 73.595 60 AA_U97A98:A112A113_AA A 97 ? A 113 ? A 98 ? A 112 ? 1 A A 99 1_555 A A 113 1_555 A G 100 1_555 A C 112 1_555 -0.700 -2.696 2.510 6.809 8.718 -3.438 -3.012 9.319 3.186 -57.366 44.806 -11.582 61 AA_A98G99:C111A112_AA A 98 ? A 112 ? A 99 ? A 111 ? 1 A G 100 1_555 A C 112 1_555 A C 101 1_555 A G 111 1_555 -0.280 -0.875 3.064 1.450 10.163 30.230 -3.246 0.746 2.624 18.817 -2.685 31.887 62 AA_G99C100:G110C111_AA A 99 ? A 111 ? A 100 ? A 110 ? 1 A C 101 1_555 A G 111 1_555 A C 102 1_555 A G 110 1_555 0.128 -1.427 3.164 0.367 10.921 36.691 -3.427 -0.153 2.649 16.893 -0.567 38.230 63 AA_C100C101:G109G110_AA A 100 ? A 110 ? A 101 ? A 109 ? 1 A C 102 1_555 A G 110 1_555 A A 103 1_555 A U 109 1_555 0.659 -2.095 3.434 -0.506 10.743 13.033 -12.908 -2.515 1.308 39.629 1.868 16.883 64 AA_C101A102:U108G109_AA A 101 ? A 109 ? A 102 ? A 108 ? 1 A U 165 1_555 A U 160 1_555 A C 166 1_555 A G 159 1_555 -0.430 -0.795 2.685 7.400 -3.151 51.354 -0.735 0.897 2.644 -3.611 -8.480 51.938 65 AA_U164C165:G158U159_AA A 164 ? A 159 ? A 165 ? A 158 ? 1 A C 166 1_555 A G 159 1_555 A G 167 1_555 A C 158 1_555 -0.225 -1.427 2.908 -0.389 21.039 25.104 -5.245 0.349 1.346 40.510 0.750 32.648 66 AA_C165G166:C157G158_AA A 165 ? A 158 ? A 166 ? A 157 ? 1 A G 167 1_555 A C 158 1_555 A G 168 1_555 A C 157 1_555 -0.448 -2.002 3.054 -8.337 -2.336 26.902 -3.570 -0.985 3.205 -4.864 17.358 28.236 67 AA_G166G167:C156C157_AA A 166 ? A 157 ? A 167 ? A 156 ? 1 A G 168 1_555 A C 157 1_555 A U 169 1_555 A A 156 1_555 -0.135 -2.296 3.269 -0.637 -0.417 37.950 -3.476 0.126 3.295 -0.641 0.979 37.958 68 AA_G167U168:A155C156_AA A 167 ? A 156 ? A 168 ? A 155 ? 1 A U 169 1_555 A A 156 1_555 A C 170 1_555 A G 154 1_555 0.126 -1.310 2.903 5.806 -0.183 32.275 -2.293 0.668 2.888 -0.326 -10.340 32.780 69 AA_U168C169:G153A155_AA A 168 ? A 155 ? A 169 ? A 153 ? 1 A C 170 1_555 A G 154 1_555 A G 171 1_555 A C 216 1_555 0.702 -2.137 2.762 -2.124 4.660 28.214 -5.141 -1.794 2.328 9.461 4.311 28.666 70 AA_C169G170:C215G153_AA A 169 ? A 153 ? A 170 ? A 215 ? 1 A G 171 1_555 A C 216 1_555 A C 172 1_555 A G 215 1_555 0.543 -1.872 3.357 3.569 4.344 36.308 -3.565 -0.374 3.157 6.920 -5.686 36.726 71 AA_G170C171:G214C215_AA A 170 ? A 215 ? A 171 ? A 214 ? 1 A C 172 1_555 A G 215 1_555 A C 173 1_555 A G 214 1_555 -0.525 -1.764 3.679 5.418 0.917 32.300 -3.302 1.964 3.497 1.633 -9.652 32.752 72 AA_C171C172:G213G214_AA A 171 ? A 214 ? A 172 ? A 213 ? 1 A A 176 1_555 A A 213 1_555 A G 177 1_555 A C 212 1_555 1.431 -1.423 4.130 1.203 10.272 63.231 -1.891 -1.287 3.906 9.729 -1.139 63.985 73 AA_A175G176:C211A212_AA A 175 ? A 212 ? A 176 ? A 211 ? 1 A G 177 1_555 A C 212 1_555 A G 178 1_555 A C 210 1_555 1.869 -1.998 2.878 -14.323 11.125 47.298 -2.930 -2.947 1.794 13.308 17.134 50.469 74 AA_G176G177:C209C211_AA A 176 ? A 211 ? A 177 ? A 209 ? 1 A G 178 1_555 A C 210 1_555 A A 179 1_555 A U 209 1_555 0.327 -1.667 3.479 -0.392 11.129 32.215 -4.590 -0.620 2.763 19.348 0.681 34.037 75 AA_G177A178:U208C209_AA A 177 ? A 209 ? A 178 ? A 208 ? 1 A A 179 1_555 A U 209 1_555 A G 180 1_555 A C 208 1_555 -0.557 -1.523 3.169 -3.080 5.388 35.818 -3.151 0.488 2.952 8.681 4.962 36.334 76 AA_A178G179:C207U208_AA A 178 ? A 208 ? A 179 ? A 207 ? 1 A G 180 1_555 A C 208 1_555 A C 181 1_555 A A 206 1_555 -2.575 -1.071 2.994 8.426 0.602 60.125 -1.086 2.902 2.636 0.597 -8.365 60.661 77 AA_G179C180:A205C207_AA A 179 ? A 207 ? A 180 ? A 205 ? 1 A A 183 1_555 A G 204 1_555 A G 184 1_555 A U 203 1_555 0.805 -1.082 3.189 -11.297 18.242 53.159 -2.048 -1.410 2.520 19.511 12.083 57.032 78 AA_A182G183:U202G203_AA A 182 ? A 203 ? A 183 ? A 202 ? 1 A G 184 1_555 A U 203 1_555 A C 185 1_555 A G 202 1_555 0.528 -1.332 2.969 8.762 2.068 39.143 -2.157 0.145 2.944 3.038 -12.872 40.126 79 AA_G183C184:G201U202_AA A 183 ? A 202 ? A 184 ? A 201 ? 1 A C 185 1_555 A G 202 1_555 A U 186 1_555 A A 201 1_555 -0.350 -2.092 3.955 -7.879 11.674 34.687 -4.999 -0.623 3.119 18.657 12.591 37.356 80 AA_C184U185:A200G201_AA A 184 ? A 201 ? A 185 ? A 200 ? 1 A U 186 1_555 A A 201 1_555 A C 187 1_555 A G 200 1_555 0.290 -2.130 3.238 -1.412 10.874 32.348 -5.162 -0.692 2.403 18.854 2.448 34.109 81 AA_U185C186:G199A200_AA A 185 ? A 200 ? A 186 ? A 199 ? 1 A C 187 1_555 A G 200 1_555 A U 188 1_555 A A 199 1_555 0.063 -1.684 2.996 4.786 5.205 33.344 -3.603 0.561 2.693 8.947 -8.226 34.064 82 AA_C186U187:A198G199_AA A 186 ? A 199 ? A 187 ? A 198 ? 1 A U 188 1_555 A A 199 1_555 A G 189 1_555 A C 198 1_555 -0.160 -1.605 3.255 1.496 19.245 33.888 -4.465 0.401 2.075 30.174 -2.346 38.859 83 AA_U187G188:C197A198_AA A 187 ? A 198 ? A 188 ? A 197 ? 1 A G 189 1_555 A C 198 1_555 A C 190 1_555 A G 197 1_555 -0.217 -1.029 3.127 0.004 0.606 28.869 -2.192 0.436 3.105 1.216 -0.008 28.875 84 AA_G188C189:G196C197_AA A 188 ? A 197 ? A 189 ? A 196 ? 1 A C 190 1_555 A G 197 1_555 A G 191 1_555 A U 196 1_555 0.891 -1.312 2.798 -3.962 12.217 22.398 -5.456 -2.812 1.687 28.625 9.282 25.778 85 AA_C189G190:U195G196_AA A 189 ? A 196 ? A 190 ? A 195 ? # _pdbx_audit_support.funding_organization 'Department of Energy (DOE, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 20230044DR _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6WLT _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9N3J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H MG N O P # loop_ #