HEADER METAL BINDING PROTEIN 09-FEB-25 9N8T TITLE GLUTARATE L-2-HYDROXYLASE Q184C MUTANT-5'-MAL-C2-AGCT DNA CONJUGATE AT TITLE 2 2.01 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTARATE 2-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G-2-H; COMPND 5 EC: 1.14.11.64; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-P*AP*GP*CP*T-3'); COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GLAH, ECOLC_1047; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS OXYGENASE, HYDROXYLASE, METAL BINDING, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.HAN,C.A.MIRKIN REVDAT 1 29-JUL-26 9N8T 0 JRNL AUTH Z.HAN,C.A.MIRKIN JRNL TITL DIFFRACTION-QUALITY, ULTRAFLEXIBLE PROTEIN SINGLE CRYSTALS JRNL TITL 2 ENGINEERED WITH DNA JRNL REF SCI ADV 2026 JRNL REFN ESSN 2375-2548 JRNL DOI 10.1126/SCIADV.AEH2948 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 26734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1425 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1848 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.9980 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 1.1140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2356 REMARK 3 NUCLEIC ACID ATOMS : 62 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2508 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2318 ; 0.000 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3409 ; 1.384 ; 1.832 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5319 ; 0.462 ; 1.763 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 6.898 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ;16.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;13.015 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2911 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1149 ; 1.997 ; 4.001 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1149 ; 1.997 ; 4.001 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1431 ; 3.179 ; 7.162 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1432 ; 3.178 ; 7.163 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1359 ; 2.563 ; 5.104 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1344 ; 2.491 ; 5.070 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1955 ; 4.147 ; 9.218 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2773 ; 6.498 ;46.030 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2730 ; 6.181 ;45.530 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9N8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1000292796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979098 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20230630 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 26.70 REMARK 200 R MERGE (I) : 0.25600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.00 REMARK 200 R MERGE FOR SHELL (I) : 4.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CHLORIDE, 25 % V/V REMARK 280 GLYCEROL, 0.05 M BIS-TRIS PH 7, 1.8 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 48.03150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 91.92900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 48.03150 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 91.92900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 48.03150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 91.92900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 48.03150 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 91.92900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 48.03150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 91.92900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 48.03150 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 91.92900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 48.03150 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 91.92900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 48.03150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 48.03150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 91.92900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 575 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 598 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 HIS A 8 REMARK 465 ASN A 9 REMARK 465 ASN A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 VAL A 143 REMARK 465 ASP A 144 REMARK 465 ASN A 145 REMARK 465 SER A 146 REMARK 465 ASP A 147 REMARK 465 SER A 148 REMARK 465 PRO A 218 REMARK 465 SER A 219 REMARK 465 LYS A 220 REMARK 465 ASN A 221 REMARK 465 VAL A 222 REMARK 465 SER A 223 REMARK 465 ALA A 317 REMARK 465 THR A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 DT E 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 154 NH1 ARG A 296 2.04 REMARK 500 N NH4 A 401 O1 SO4 A 408 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 92 -101.26 -123.37 REMARK 500 ASP A 103 19.12 -162.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 209 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 160 NE2 REMARK 620 2 ASP A 162 OD1 96.6 REMARK 620 3 HIS A 292 NE2 98.3 92.9 REMARK 620 4 HOH A 552 O 166.2 96.0 86.6 REMARK 620 5 HOH A 557 O 94.4 90.9 166.3 79.8 REMARK 620 6 HOH A 622 O 92.7 165.1 97.2 73.8 76.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9BWU RELATED DB: PDB REMARK 900 RELATED ID: 9N2U RELATED DB: PDB REMARK 900 RELATED ID: 9N33 RELATED DB: PDB REMARK 900 RELATED ID: 9N34 RELATED DB: PDB REMARK 900 RELATED ID: 9N53 RELATED DB: PDB REMARK 900 RELATED ID: 9N56 RELATED DB: PDB REMARK 900 RELATED ID: 9N57 RELATED DB: PDB REMARK 900 RELATED ID: 9N5S RELATED DB: PDB REMARK 900 RELATED ID: 9N5W RELATED DB: PDB REMARK 900 RELATED ID: 9N60 RELATED DB: PDB REMARK 900 RELATED ID: 9N6S RELATED DB: PDB REMARK 900 RELATED ID: 9N7C RELATED DB: PDB REMARK 900 RELATED ID: 9N7H RELATED DB: PDB REMARK 900 RELATED ID: 9N7I RELATED DB: PDB REMARK 900 RELATED ID: 9N7J RELATED DB: PDB REMARK 900 RELATED ID: 9N7L RELATED DB: PDB REMARK 900 RELATED ID: 9N7N RELATED DB: PDB REMARK 900 RELATED ID: 9N7P RELATED DB: PDB REMARK 900 RELATED ID: 9N7U RELATED DB: PDB REMARK 900 RELATED ID: 9N7X RELATED DB: PDB REMARK 900 RELATED ID: 9N8C RELATED DB: PDB REMARK 900 RELATED ID: 9N8D RELATED DB: PDB REMARK 900 RELATED ID: 9N8K RELATED DB: PDB REMARK 900 RELATED ID: 9N8L RELATED DB: PDB REMARK 900 RELATED ID: 9N8O RELATED DB: PDB DBREF 9N8T A 1 320 UNP B1IVJ9 GLAH_ECOLC 1 320 DBREF 9N8T E 1 4 PDB 9N8T 9N8T 1 4 SEQADV 9N8T THR A 24 UNP B1IVJ9 ILE 24 CONFLICT SEQADV 9N8T CYS A 184 UNP B1IVJ9 GLN 184 ENGINEERED MUTATION SEQADV 9N8T HIS A 321 UNP B1IVJ9 EXPRESSION TAG SEQADV 9N8T HIS A 322 UNP B1IVJ9 EXPRESSION TAG SEQADV 9N8T HIS A 323 UNP B1IVJ9 EXPRESSION TAG SEQADV 9N8T HIS A 324 UNP B1IVJ9 EXPRESSION TAG SEQRES 1 A 324 MET ASN ALA LEU THR ALA VAL HIS ASN ASN ALA VAL ASP SEQRES 2 A 324 SER GLY GLN ASP TYR SER GLY PHE THR LEU THR PRO SER SEQRES 3 A 324 ALA GLN SER PRO ARG LEU LEU GLU LEU THR PHE THR GLU SEQRES 4 A 324 GLN THR THR LYS GLN PHE LEU GLU GLN VAL ALA GLU TRP SEQRES 5 A 324 PRO VAL GLN ALA LEU GLU TYR LYS SER PHE LEU ARG PHE SEQRES 6 A 324 ARG VAL GLY LYS ILE LEU ASP ASP LEU CYS ALA ASN GLN SEQRES 7 A 324 LEU GLN PRO LEU LEU LEU LYS THR LEU LEU ASN ARG ALA SEQRES 8 A 324 GLU GLY ALA LEU LEU ILE ASN ALA VAL GLY ILE ASP ASP SEQRES 9 A 324 VAL ALA GLN ALA ASP GLU MET VAL LYS LEU ALA THR ALA SEQRES 10 A 324 VAL ALA HIS LEU ILE GLY ARG SER ASN PHE ASP ALA MET SEQRES 11 A 324 SER GLY GLN TYR TYR ALA ARG PHE VAL VAL LYS ASN VAL SEQRES 12 A 324 ASP ASN SER ASP SER TYR LEU ARG GLN PRO HIS ARG VAL SEQRES 13 A 324 MET GLU LEU HIS ASN ASP GLY THR TYR VAL GLU GLU ILE SEQRES 14 A 324 THR ASP TYR VAL LEU MET MET LYS ILE ASP GLU GLN ASN SEQRES 15 A 324 MET CYS GLY GLY ASN SER LEU LEU LEU HIS LEU ASP ASP SEQRES 16 A 324 TRP GLU HIS LEU ASP HIS TYR PHE ARG HIS PRO LEU ALA SEQRES 17 A 324 ARG ARG PRO MET ARG PHE ALA ALA PRO PRO SER LYS ASN SEQRES 18 A 324 VAL SER LYS ASP VAL PHE HIS PRO VAL PHE ASP VAL ASP SEQRES 19 A 324 GLN GLN GLY ARG PRO VAL MET ARG TYR ILE ASP GLN PHE SEQRES 20 A 324 VAL GLN PRO LYS ASP PHE GLU GLU GLY VAL TRP LEU SER SEQRES 21 A 324 GLU LEU SER ASP ALA ILE GLU THR SER LYS GLY ILE LEU SEQRES 22 A 324 SER VAL PRO VAL PRO VAL GLY LYS PHE LEU LEU ILE ASN SEQRES 23 A 324 ASN LEU PHE TRP LEU HIS GLY ARG ASP ARG PHE THR PRO SEQRES 24 A 324 HIS PRO ASP LEU ARG ARG GLU LEU MET ARG GLN ARG GLY SEQRES 25 A 324 TYR PHE ALA TYR ALA THR HIS HIS HIS HIS HIS HIS SEQRES 1 E 4 DA DG DC DT HET NH4 A 401 1 HET NH4 A 402 1 HET GOL A 403 6 HET NH4 A 404 1 HET FE2 A 405 1 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HETNAM NH4 AMMONIUM ION HETNAM GOL GLYCEROL HETNAM FE2 FE (II) ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NH4 3(H4 N 1+) FORMUL 5 GOL C3 H8 O3 FORMUL 7 FE2 FE 2+ FORMUL 8 SO4 4(O4 S 2-) FORMUL 12 HOH *146(H2 O) HELIX 1 AA1 THR A 38 ALA A 50 1 13 HELIX 2 AA2 PRO A 53 LYS A 60 1 8 HELIX 3 AA3 SER A 61 CYS A 75 1 15 HELIX 4 AA4 GLN A 78 ASN A 89 1 12 HELIX 5 AA5 ASP A 104 ALA A 106 5 3 HELIX 6 AA6 GLN A 107 ILE A 122 1 16 HELIX 7 AA7 ASP A 194 TRP A 196 5 3 HELIX 8 AA8 HIS A 198 ARG A 204 1 7 HELIX 9 AA9 HIS A 205 ARG A 210 5 6 HELIX 10 AB1 ASP A 252 THR A 268 1 17 SHEET 1 AA1 7 PHE A 21 PRO A 25 0 SHEET 2 AA1 7 LEU A 32 PHE A 37 -1 O GLU A 34 N THR A 24 SHEET 3 AA1 7 ALA A 94 ALA A 99 1 O LEU A 96 N LEU A 35 SHEET 4 AA1 7 PHE A 282 ASN A 286 -1 O PHE A 282 N ILE A 97 SHEET 5 AA1 7 TYR A 172 GLN A 181 -1 N MET A 175 O LEU A 283 SHEET 6 AA1 7 ARG A 304 PHE A 314 -1 O MET A 308 N MET A 176 SHEET 7 AA1 7 GLY A 123 SER A 125 -1 N ARG A 124 O TYR A 313 SHEET 1 AA2 7 PHE A 21 PRO A 25 0 SHEET 2 AA2 7 LEU A 32 PHE A 37 -1 O GLU A 34 N THR A 24 SHEET 3 AA2 7 ALA A 94 ALA A 99 1 O LEU A 96 N LEU A 35 SHEET 4 AA2 7 PHE A 282 ASN A 286 -1 O PHE A 282 N ILE A 97 SHEET 5 AA2 7 TYR A 172 GLN A 181 -1 N MET A 175 O LEU A 283 SHEET 6 AA2 7 ARG A 304 PHE A 314 -1 O MET A 308 N MET A 176 SHEET 7 AA2 7 ALA A 136 VAL A 140 -1 N VAL A 140 O ARG A 305 SHEET 1 AA3 4 MET A 157 HIS A 160 0 SHEET 2 AA3 4 TRP A 290 ARG A 294 -1 O ARG A 294 N MET A 157 SHEET 3 AA3 4 SER A 188 HIS A 192 -1 N LEU A 191 O LEU A 291 SHEET 4 AA3 4 LEU A 273 VAL A 275 -1 O LEU A 273 N LEU A 190 SHEET 1 AA4 2 CYS A 184 GLY A 185 0 SHEET 2 AA4 2 PHE A 297 THR A 298 -1 O THR A 298 N CYS A 184 SHEET 1 AA5 3 VAL A 226 HIS A 228 0 SHEET 2 AA5 3 MET A 212 PHE A 214 -1 N PHE A 214 O VAL A 226 SHEET 3 AA5 3 VAL A 248 GLN A 249 -1 O GLN A 249 N ARG A 213 SHEET 1 AA6 2 PHE A 231 VAL A 233 0 SHEET 2 AA6 2 PRO A 239 MET A 241 -1 O VAL A 240 N ASP A 232 LINK NE2 HIS A 160 FE FE2 A 405 1555 1555 2.12 LINK OD1 ASP A 162 FE FE2 A 405 1555 1555 2.01 LINK NE2 HIS A 292 FE FE2 A 405 1555 1555 2.10 LINK FE FE2 A 405 O HOH A 552 1555 1555 2.30 LINK FE FE2 A 405 O HOH A 557 1555 1555 1.97 LINK FE FE2 A 405 O HOH A 622 1555 1555 2.37 CRYST1 96.063 96.063 183.858 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010410 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005439 0.00000 CONECT 1102 2430 CONECT 1117 2430 CONECT 2142 2430 CONECT 2423 2424 2425 CONECT 2424 2423 CONECT 2425 2423 2426 2427 CONECT 2426 2425 CONECT 2427 2425 2428 CONECT 2428 2427 CONECT 2430 1102 1117 2142 2502 CONECT 2430 2507 2572 CONECT 2431 2432 2433 2434 2435 CONECT 2432 2431 CONECT 2433 2431 CONECT 2434 2431 CONECT 2435 2431 CONECT 2436 2437 2438 2439 2440 CONECT 2437 2436 CONECT 2438 2436 CONECT 2439 2436 CONECT 2440 2436 CONECT 2441 2442 2443 2444 2445 CONECT 2442 2441 CONECT 2443 2441 CONECT 2444 2441 CONECT 2445 2441 CONECT 2446 2447 2448 2449 2450 CONECT 2447 2446 CONECT 2448 2446 CONECT 2449 2446 CONECT 2450 2446 CONECT 2502 2430 CONECT 2507 2430 CONECT 2572 2430 MASTER 445 0 9 10 25 0 0 6 2594 2 34 26 END