data_9NAK # _entry.id 9NAK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9NAK pdb_00009nak 10.2210/pdb9nak/pdb WWPDB D_1000292873 ? ? EMDB EMD-49197 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-03-04 ? 2 'EM metadata' 1 0 2026-03-04 ? 3 'Additional map' 1 0 2026-03-04 1 4 'Half map' 1 0 2026-03-04 1 5 'Half map' 1 0 2026-03-04 2 6 Image 1 0 2026-03-04 ? 7 Mask 1 0 2026-03-04 1 8 'Primary map' 1 0 2026-03-04 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9NAK _pdbx_database_status.recvd_initial_deposition_date 2025-02-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'RNA scaffold attached to tRNA' _pdbx_database_related.db_id EMD-49197 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email adrian.ferre@nih.gov _pdbx_contact_author.name_first "Ferre-D'Amare" _pdbx_contact_author.name_last Adrian _pdbx_contact_author.name_mi R _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4549-1619 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jones, C.P.' 1 0000-0001-7780-5278 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Symmetric scaffolds enable de novo modelling of RNA by cryoEM' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jones, C.P.' 1 0000-0001-7780-5278 primary ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Scaffold attached to tRNA' 54183.059 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 26 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGGCCACUGUUUCACUGUUGCGCUACAUCUGGCGGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACGCAGGGGG UCGCGGGUUCGAGUCCCGUCCGUUCGGCCAGGCCACACGAAAGUGUGGAGUGACCAGUGGCCCCACCCUGAAGGUAAACU UGUAGCGC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGGCCACUGUUUCACUGUUGCGCUACAUCUGGCGGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACGCAGGGGG UCGCGGGUUCGAGUCCCGUCCGUUCGGCCAGGCCACACGAAAGUGUGGAGUGACCAGUGGCCCCACCCUGAAGGUAAACU UGUAGCGC ; _entity_poly.pdbx_strand_id A,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'POTASSIUM ION' K 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 C n 1 6 A n 1 7 C n 1 8 U n 1 9 G n 1 10 U n 1 11 U n 1 12 U n 1 13 C n 1 14 A n 1 15 C n 1 16 U n 1 17 G n 1 18 U n 1 19 U n 1 20 G n 1 21 C n 1 22 G n 1 23 C n 1 24 U n 1 25 A n 1 26 C n 1 27 A n 1 28 U n 1 29 C n 1 30 U n 1 31 G n 1 32 G n 1 33 C n 1 34 G n 1 35 G n 1 36 A n 1 37 G n 1 38 C n 1 39 G n 1 40 G n 1 41 U n 1 42 A n 1 43 G n 1 44 U n 1 45 U n 1 46 C n 1 47 A n 1 48 G n 1 49 U n 1 50 C n 1 51 G n 1 52 G n 1 53 U n 1 54 U n 1 55 A n 1 56 G n 1 57 A n 1 58 A n 1 59 U n 1 60 A n 1 61 C n 1 62 C n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 U n 1 68 G n 1 69 U n 1 70 C n 1 71 A n 1 72 C n 1 73 G n 1 74 C n 1 75 A n 1 76 G n 1 77 G n 1 78 G n 1 79 G n 1 80 G n 1 81 U n 1 82 C n 1 83 G n 1 84 C n 1 85 G n 1 86 G n 1 87 G n 1 88 U n 1 89 U n 1 90 C n 1 91 G n 1 92 A n 1 93 G n 1 94 U n 1 95 C n 1 96 C n 1 97 C n 1 98 G n 1 99 U n 1 100 C n 1 101 C n 1 102 G n 1 103 U n 1 104 U n 1 105 C n 1 106 G n 1 107 G n 1 108 C n 1 109 C n 1 110 A n 1 111 G n 1 112 G n 1 113 C n 1 114 C n 1 115 A n 1 116 C n 1 117 A n 1 118 C n 1 119 G n 1 120 A n 1 121 A n 1 122 A n 1 123 G n 1 124 U n 1 125 G n 1 126 U n 1 127 G n 1 128 G n 1 129 A n 1 130 G n 1 131 U n 1 132 G n 1 133 A n 1 134 C n 1 135 C n 1 136 A n 1 137 G n 1 138 U n 1 139 G n 1 140 G n 1 141 C n 1 142 C n 1 143 C n 1 144 C n 1 145 A n 1 146 C n 1 147 C n 1 148 C n 1 149 U n 1 150 G n 1 151 A n 1 152 A n 1 153 G n 1 154 G n 1 155 U n 1 156 A n 1 157 A n 1 158 A n 1 159 C n 1 160 U n 1 161 U n 1 162 G n 1 163 U n 1 164 A n 1 165 G n 1 166 C n 1 167 G n 1 168 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 168 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 A 25 25 25 A A A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 U 28 28 28 U U A . n A 1 29 C 29 29 29 C C A . n A 1 30 U 30 30 30 U U A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 G 37 37 37 G G A . n A 1 38 C 38 38 38 C C A . n A 1 39 G 39 39 39 G G A . n A 1 40 G 40 40 40 G G A . n A 1 41 U 41 41 41 U U A . n A 1 42 A 42 42 42 A A A . n A 1 43 G 43 43 43 G G A . n A 1 44 U 44 44 44 U U A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 C 50 50 50 C C A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 U 53 53 53 U U A . n A 1 54 U 54 54 54 U U A . n A 1 55 A 55 55 55 A A A . n A 1 56 G 56 56 56 G G A . n A 1 57 A 57 57 57 A A A . n A 1 58 A 58 58 58 A A A . n A 1 59 U 59 59 59 U U A . n A 1 60 A 60 60 60 A A A . n A 1 61 C 61 61 61 C C A . n A 1 62 C 62 62 62 C C A . n A 1 63 U 63 63 63 U U A . n A 1 64 G 64 64 64 G G A . n A 1 65 C 65 65 65 C C A . n A 1 66 C 66 66 66 C C A . n A 1 67 U 67 67 67 U U A . n A 1 68 G 68 68 68 G G A . n A 1 69 U 69 69 69 U U A . n A 1 70 C 70 70 70 C C A . n A 1 71 A 71 71 71 A A A . n A 1 72 C 72 72 72 C C A . n A 1 73 G 73 73 73 G G A . n A 1 74 C 74 74 74 C C A . n A 1 75 A 75 75 75 A A A . n A 1 76 G 76 76 76 G G A . n A 1 77 G 77 77 77 G G A . n A 1 78 G 78 78 78 G G A . n A 1 79 G 79 79 79 G G A . n A 1 80 G 80 80 80 G G A . n A 1 81 U 81 81 81 U U A . n A 1 82 C 82 82 82 C C A . n A 1 83 G 83 83 83 G G A . n A 1 84 C 84 84 84 C C A . n A 1 85 G 85 85 85 G G A . n A 1 86 G 86 86 86 G G A . n A 1 87 G 87 87 87 G G A . n A 1 88 U 88 88 88 U U A . n A 1 89 U 89 89 89 U U A . n A 1 90 C 90 90 90 C C A . n A 1 91 G 91 91 91 G G A . n A 1 92 A 92 92 92 A A A . n A 1 93 G 93 93 93 G G A . n A 1 94 U 94 94 94 U U A . n A 1 95 C 95 95 95 C C A . n A 1 96 C 96 96 96 C C A . n A 1 97 C 97 97 97 C C A . n A 1 98 G 98 98 98 G G A . n A 1 99 U 99 99 99 U U A . n A 1 100 C 100 100 100 C C A . n A 1 101 C 101 101 101 C C A . n A 1 102 G 102 102 102 G G A . n A 1 103 U 103 103 103 U U A . n A 1 104 U 104 104 104 U U A . n A 1 105 C 105 105 105 C C A . n A 1 106 G 106 106 106 G G A . n A 1 107 G 107 107 107 G G A . n A 1 108 C 108 108 108 C C A . n A 1 109 C 109 109 109 C C A . n A 1 110 A 110 110 110 A A A . n A 1 111 G 111 111 111 G G A . n A 1 112 G 112 112 112 G G A . n A 1 113 C 113 113 113 C C A . n A 1 114 C 114 114 114 C C A . n A 1 115 A 115 115 115 A A A . n A 1 116 C 116 116 116 C C A . n A 1 117 A 117 117 117 A A A . n A 1 118 C 118 118 118 C C A . n A 1 119 G 119 119 119 G G A . n A 1 120 A 120 120 120 A A A . n A 1 121 A 121 121 121 A A A . n A 1 122 A 122 122 122 A A A . n A 1 123 G 123 123 123 G G A . n A 1 124 U 124 124 124 U U A . n A 1 125 G 125 125 125 G G A . n A 1 126 U 126 126 126 U U A . n A 1 127 G 127 127 127 G G A . n A 1 128 G 128 128 128 G G A . n A 1 129 A 129 129 129 A A A . n A 1 130 G 130 130 130 G G A . n A 1 131 U 131 131 131 U U A . n A 1 132 G 132 132 132 G G A . n A 1 133 A 133 133 133 A A A . n A 1 134 C 134 134 134 C C A . n A 1 135 C 135 135 135 C C A . n A 1 136 A 136 136 136 A A A . n A 1 137 G 137 137 137 G G A . n A 1 138 U 138 138 138 U U A . n A 1 139 G 139 139 139 G G A . n A 1 140 G 140 140 140 G G A . n A 1 141 C 141 141 141 C C A . n A 1 142 C 142 142 142 C C A . n A 1 143 C 143 143 143 C C A . n A 1 144 C 144 144 ? ? ? A . n A 1 145 A 145 145 ? ? ? A . n A 1 146 C 146 146 ? ? ? A . n A 1 147 C 147 147 ? ? ? A . n A 1 148 C 148 148 ? ? ? A . n A 1 149 U 149 149 ? ? ? A . n A 1 150 G 150 150 ? ? ? A . n A 1 151 A 151 151 ? ? ? A . n A 1 152 A 152 152 ? ? ? A . n A 1 153 G 153 153 ? ? ? A . n A 1 154 G 154 154 ? ? ? A . n A 1 155 U 155 155 ? ? ? A . n A 1 156 A 156 156 156 A A A . n A 1 157 A 157 157 157 A A A . n A 1 158 A 158 158 158 A A A . n A 1 159 C 159 159 159 C C A . n A 1 160 U 160 160 160 U U A . n A 1 161 U 161 161 161 U U A . n A 1 162 G 162 162 162 G G A . n A 1 163 U 163 163 163 U U A . n A 1 164 A 164 164 164 A A A . n A 1 165 G 165 165 165 G G A . n A 1 166 C 166 166 166 C C A . n A 1 167 G 167 167 167 G G A . n A 1 168 C 168 168 168 C C A . n B 1 1 G 1 1 1 G G C . n B 1 2 G 2 2 2 G G C . n B 1 3 G 3 3 3 G G C . n B 1 4 C 4 4 4 C C C . n B 1 5 C 5 5 ? ? ? C . n B 1 6 A 6 6 ? ? ? C . n B 1 7 C 7 7 ? ? ? C . n B 1 8 U 8 8 ? ? ? C . n B 1 9 G 9 9 ? ? ? C . n B 1 10 U 10 10 ? ? ? C . n B 1 11 U 11 11 ? ? ? C . n B 1 12 U 12 12 ? ? ? C . n B 1 13 C 13 13 ? ? ? C . n B 1 14 A 14 14 ? ? ? C . n B 1 15 C 15 15 ? ? ? C . n B 1 16 U 16 16 ? ? ? C . n B 1 17 G 17 17 ? ? ? C . n B 1 18 U 18 18 ? ? ? C . n B 1 19 U 19 19 ? ? ? C . n B 1 20 G 20 20 ? ? ? C . n B 1 21 C 21 21 ? ? ? C . n B 1 22 G 22 22 ? ? ? C . n B 1 23 C 23 23 ? ? ? C . n B 1 24 U 24 24 ? ? ? C . n B 1 25 A 25 25 ? ? ? C . n B 1 26 C 26 26 ? ? ? C . n B 1 27 A 27 27 ? ? ? C . n B 1 28 U 28 28 ? ? ? C . n B 1 29 C 29 29 ? ? ? C . n B 1 30 U 30 30 ? ? ? C . n B 1 31 G 31 31 ? ? ? C . n B 1 32 G 32 32 ? ? ? C . n B 1 33 C 33 33 ? ? ? C . n B 1 34 G 34 34 ? ? ? C . n B 1 35 G 35 35 ? ? ? C . n B 1 36 A 36 36 ? ? ? C . n B 1 37 G 37 37 ? ? ? C . n B 1 38 C 38 38 ? ? ? C . n B 1 39 G 39 39 ? ? ? C . n B 1 40 G 40 40 ? ? ? C . n B 1 41 U 41 41 ? ? ? C . n B 1 42 A 42 42 ? ? ? C . n B 1 43 G 43 43 ? ? ? C . n B 1 44 U 44 44 ? ? ? C . n B 1 45 U 45 45 ? ? ? C . n B 1 46 C 46 46 ? ? ? C . n B 1 47 A 47 47 ? ? ? C . n B 1 48 G 48 48 ? ? ? C . n B 1 49 U 49 49 ? ? ? C . n B 1 50 C 50 50 ? ? ? C . n B 1 51 G 51 51 ? ? ? C . n B 1 52 G 52 52 ? ? ? C . n B 1 53 U 53 53 ? ? ? C . n B 1 54 U 54 54 ? ? ? C . n B 1 55 A 55 55 ? ? ? C . n B 1 56 G 56 56 ? ? ? C . n B 1 57 A 57 57 ? ? ? C . n B 1 58 A 58 58 ? ? ? C . n B 1 59 U 59 59 ? ? ? C . n B 1 60 A 60 60 ? ? ? C . n B 1 61 C 61 61 ? ? ? C . n B 1 62 C 62 62 ? ? ? C . n B 1 63 U 63 63 ? ? ? C . n B 1 64 G 64 64 ? ? ? C . n B 1 65 C 65 65 ? ? ? C . n B 1 66 C 66 66 ? ? ? C . n B 1 67 U 67 67 ? ? ? C . n B 1 68 G 68 68 ? ? ? C . n B 1 69 U 69 69 ? ? ? C . n B 1 70 C 70 70 ? ? ? C . n B 1 71 A 71 71 ? ? ? C . n B 1 72 C 72 72 ? ? ? C . n B 1 73 G 73 73 ? ? ? C . n B 1 74 C 74 74 ? ? ? C . n B 1 75 A 75 75 ? ? ? C . n B 1 76 G 76 76 ? ? ? C . n B 1 77 G 77 77 ? ? ? C . n B 1 78 G 78 78 ? ? ? C . n B 1 79 G 79 79 ? ? ? C . n B 1 80 G 80 80 ? ? ? C . n B 1 81 U 81 81 ? ? ? C . n B 1 82 C 82 82 ? ? ? C . n B 1 83 G 83 83 ? ? ? C . n B 1 84 C 84 84 ? ? ? C . n B 1 85 G 85 85 ? ? ? C . n B 1 86 G 86 86 ? ? ? C . n B 1 87 G 87 87 ? ? ? C . n B 1 88 U 88 88 ? ? ? C . n B 1 89 U 89 89 ? ? ? C . n B 1 90 C 90 90 ? ? ? C . n B 1 91 G 91 91 ? ? ? C . n B 1 92 A 92 92 ? ? ? C . n B 1 93 G 93 93 ? ? ? C . n B 1 94 U 94 94 ? ? ? C . n B 1 95 C 95 95 ? ? ? C . n B 1 96 C 96 96 ? ? ? C . n B 1 97 C 97 97 ? ? ? C . n B 1 98 G 98 98 ? ? ? C . n B 1 99 U 99 99 ? ? ? C . n B 1 100 C 100 100 ? ? ? C . n B 1 101 C 101 101 ? ? ? C . n B 1 102 G 102 102 ? ? ? C . n B 1 103 U 103 103 ? ? ? C . n B 1 104 U 104 104 ? ? ? C . n B 1 105 C 105 105 ? ? ? C . n B 1 106 G 106 106 ? ? ? C . n B 1 107 G 107 107 ? ? ? C . n B 1 108 C 108 108 ? ? ? C . n B 1 109 C 109 109 ? ? ? C . n B 1 110 A 110 110 ? ? ? C . n B 1 111 G 111 111 ? ? ? C . n B 1 112 G 112 112 ? ? ? C . n B 1 113 C 113 113 ? ? ? C . n B 1 114 C 114 114 ? ? ? C . n B 1 115 A 115 115 ? ? ? C . n B 1 116 C 116 116 ? ? ? C . n B 1 117 A 117 117 ? ? ? C . n B 1 118 C 118 118 ? ? ? C . n B 1 119 G 119 119 ? ? ? C . n B 1 120 A 120 120 ? ? ? C . n B 1 121 A 121 121 ? ? ? C . n B 1 122 A 122 122 ? ? ? C . n B 1 123 G 123 123 ? ? ? C . n B 1 124 U 124 124 ? ? ? C . n B 1 125 G 125 125 ? ? ? C . n B 1 126 U 126 126 ? ? ? C . n B 1 127 G 127 127 ? ? ? C . n B 1 128 G 128 128 ? ? ? C . n B 1 129 A 129 129 ? ? ? C . n B 1 130 G 130 130 ? ? ? C . n B 1 131 U 131 131 ? ? ? C . n B 1 132 G 132 132 ? ? ? C . n B 1 133 A 133 133 ? ? ? C . n B 1 134 C 134 134 ? ? ? C . n B 1 135 C 135 135 ? ? ? C . n B 1 136 A 136 136 ? ? ? C . n B 1 137 G 137 137 ? ? ? C . n B 1 138 U 138 138 ? ? ? C . n B 1 139 G 139 139 ? ? ? C . n B 1 140 G 140 140 140 G G C . n B 1 141 C 141 141 141 C C C . n B 1 142 C 142 142 142 C C C . n B 1 143 C 143 143 143 C C C . n B 1 144 C 144 144 ? ? ? C . n B 1 145 A 145 145 ? ? ? C . n B 1 146 C 146 146 ? ? ? C . n B 1 147 C 147 147 ? ? ? C . n B 1 148 C 148 148 ? ? ? C . n B 1 149 U 149 149 ? ? ? C . n B 1 150 G 150 150 ? ? ? C . n B 1 151 A 151 151 ? ? ? C . n B 1 152 A 152 152 ? ? ? C . n B 1 153 G 153 153 ? ? ? C . n B 1 154 G 154 154 ? ? ? C . n B 1 155 U 155 155 ? ? ? C . n B 1 156 A 156 156 ? ? ? C . n B 1 157 A 157 157 ? ? ? C . n B 1 158 A 158 158 ? ? ? C . n B 1 159 C 159 159 ? ? ? C . n B 1 160 U 160 160 ? ? ? C . n B 1 161 U 161 161 ? ? ? C . n B 1 162 G 162 162 ? ? ? C . n B 1 163 U 163 163 ? ? ? C . n B 1 164 A 164 164 ? ? ? C . n B 1 165 G 165 165 ? ? ? C . n B 1 166 C 166 166 ? ? ? C . n B 1 167 G 167 167 ? ? ? C . n B 1 168 C 168 168 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 201 2 MG MO6 A . D 2 MG 1 202 3 MG MO6 A . E 3 K 1 203 1 K K A . F 2 MG 1 201 7 MG MO6 C . G 4 HOH 1 301 3 HOH MO6 A . G 4 HOH 2 302 3 HOH MO6 A . G 4 HOH 3 303 3 HOH MO6 A . G 4 HOH 4 304 2 HOH MO6 A . G 4 HOH 5 305 8 HOH HOH A . G 4 HOH 6 306 4 HOH HOH A . G 4 HOH 7 307 3 HOH HOH A . G 4 HOH 8 308 2 HOH MO6 A . G 4 HOH 9 309 1 HOH HOH A . G 4 HOH 10 310 3 HOH MO6 A . G 4 HOH 11 311 2 HOH HOH A . G 4 HOH 12 312 5 HOH HOH A . G 4 HOH 13 313 6 HOH HOH A . G 4 HOH 14 314 3 HOH MO6 A . G 4 HOH 15 315 3 HOH MO6 A . G 4 HOH 16 316 2 HOH MO6 A . G 4 HOH 17 317 2 HOH MO6 A . G 4 HOH 18 318 2 HOH MO6 A . G 4 HOH 19 319 2 HOH MO6 A . H 4 HOH 1 301 7 HOH MO6 C . H 4 HOH 2 302 7 HOH MO6 C . H 4 HOH 3 303 7 HOH MO6 C . H 4 HOH 4 304 9 HOH HOH C . H 4 HOH 5 305 7 HOH MO6 C . H 4 HOH 6 306 7 HOH MO6 C . H 4 HOH 7 307 7 HOH MO6 C . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9NAK _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9NAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9NAK _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9NAK _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.67 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 3921 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.756 ? 6124 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 18.812 ? 1954 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.035 ? 818 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 164 ? f_plane_restr ? ? # _struct.entry_id 9NAK _struct.title 'RNA scaffold attached to tRNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9NAK _struct_keywords.text 'viral RNA, scaffold, engineering, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9NAK _struct_ref.pdbx_db_accession 9NAK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9NAK A 1 ? 168 ? 9NAK 1 ? 168 ? 1 168 2 1 9NAK C 1 ? 168 ? 9NAK 1 ? 168 ? 1 168 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 304 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 308 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 316 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 317 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 318 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 319 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 301 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 302 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 303 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 310 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 314 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 315 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc13 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? C MG 201 C HOH 301 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? C MG 201 C HOH 302 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? C MG 201 C HOH 303 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? C MG 201 C HOH 305 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? C MG 201 C HOH 306 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? C MG 201 C HOH 307 1_555 ? ? ? ? ? ? ? 2.175 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 143 N3 ? ? A G 1 A C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 143 O2 ? ? A G 1 A C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 143 N4 ? ? A G 1 A C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 142 N3 ? ? A G 2 A C 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 142 O2 ? ? A G 2 A C 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 142 N4 ? ? A G 2 A C 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 143 N3 ? ? A G 2 A C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 143 O2 ? ? A G 2 A C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 143 N4 ? ? A G 2 A C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 141 N3 ? ? A G 3 A C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 141 O2 ? ? A G 3 A C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 141 N4 ? ? A G 3 A C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 140 N1 ? ? A C 4 A G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 140 O6 ? ? A C 4 A G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 140 N2 ? ? A C 4 A G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 139 N1 ? ? A C 5 A G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 139 O6 ? ? A C 5 A G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 139 N2 ? ? A C 5 A G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 138 N3 ? ? A A 6 A U 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 138 O4 ? ? A A 6 A U 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 137 N1 ? ? A C 7 A G 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 137 O6 ? ? A C 7 A G 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 137 N2 ? ? A C 7 A G 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 136 N1 ? ? A U 8 A A 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 136 N6 ? ? A U 8 A A 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 135 N3 ? ? A G 9 A C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 135 O2 ? ? A G 9 A C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 135 N4 ? ? A G 9 A C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 11 N3 ? ? ? 1_555 A C 134 N3 ? ? A U 11 A C 134 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog30 hydrog ? ? A U 11 O4 ? ? ? 1_555 A C 134 N4 ? ? A U 11 A C 134 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog31 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 133 N1 ? ? A U 12 A A 133 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog32 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 132 N1 ? ? A C 13 A G 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 132 O6 ? ? A C 13 A G 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 132 N2 ? ? A C 13 A G 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 131 N3 ? ? A A 14 A U 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 131 O4 ? ? A A 14 A U 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 130 N1 ? ? A C 15 A G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 130 O6 ? ? A C 15 A G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 130 N2 ? ? A C 15 A G 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 16 O4 ? ? ? 1_555 A C 113 N4 ? ? A U 16 A C 113 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog41 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 129 N1 ? ? A U 16 A A 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 129 N6 ? ? A U 16 A A 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 159 N3 ? ? A G 17 A C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 159 O2 ? ? A G 17 A C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 159 N4 ? ? A G 17 A C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 158 N1 ? ? A U 18 A A 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 158 N6 ? ? A U 18 A A 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 157 N1 ? ? A U 19 A A 157 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog49 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 168 N3 ? ? A G 20 A C 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 168 O2 ? ? A G 20 A C 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 168 N4 ? ? A G 20 A C 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 167 N1 ? ? A C 21 A G 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 167 O6 ? ? A C 21 A G 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 167 N2 ? ? A C 21 A G 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 166 N3 ? ? A G 22 A C 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 166 O2 ? ? A G 22 A C 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 166 N4 ? ? A G 22 A C 166 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 165 N1 ? ? A C 23 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 165 O6 ? ? A C 23 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 165 N2 ? ? A C 23 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 164 N1 ? ? A U 24 A A 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 164 N6 ? ? A U 24 A A 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 163 N3 ? ? A A 25 A U 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 163 O4 ? ? A A 25 A U 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 162 N1 ? ? A C 26 A G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 162 O6 ? ? A C 26 A G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 162 N2 ? ? A C 26 A G 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 27 N1 ? ? ? 1_555 A U 161 N3 ? ? A A 27 A U 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 27 N6 ? ? ? 1_555 A U 161 O4 ? ? A A 27 A U 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 28 N3 ? ? ? 1_555 A U 160 O4 ? ? A U 28 A U 160 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog71 hydrog ? ? A U 28 O2 ? ? ? 1_555 A U 160 N3 ? ? A U 28 A U 160 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog72 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 111 N1 ? ? A C 29 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 111 O6 ? ? A C 29 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 111 N2 ? ? A C 29 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 30 N3 ? ? ? 1_555 A A 110 N1 ? ? A U 30 A A 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 30 O4 ? ? ? 1_555 A A 110 N6 ? ? A U 30 A A 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 109 N3 ? ? A G 31 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 109 O2 ? ? A G 31 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 109 N4 ? ? A G 31 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 108 N3 ? ? A G 32 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 108 O2 ? ? A G 32 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 108 N4 ? ? A G 32 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 107 N1 ? ? A C 33 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 107 O6 ? ? A C 33 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 107 N2 ? ? A C 33 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 34 O6 ? ? ? 1_555 A G 106 N2 ? ? A G 34 A G 106 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog87 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 105 N3 ? ? A G 35 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 105 O2 ? ? A G 35 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 105 N4 ? ? A G 35 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A A 36 N1 ? ? ? 1_555 A U 104 N3 ? ? A A 36 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A A 36 N6 ? ? ? 1_555 A U 104 O4 ? ? A A 36 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 37 N1 ? ? ? 1_555 A U 103 O2 ? ? A G 37 A U 103 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog93 hydrog ? ? A G 37 O6 ? ? ? 1_555 A U 103 N3 ? ? A G 37 A U 103 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog94 hydrog ? ? A C 38 N3 ? ? ? 1_555 A G 102 N1 ? ? A C 38 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 38 N4 ? ? ? 1_555 A G 102 O6 ? ? A C 38 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 38 O2 ? ? ? 1_555 A G 102 N2 ? ? A C 38 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 39 N1 ? ? ? 1_555 A C 101 N3 ? ? A G 39 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 39 N2 ? ? ? 1_555 A C 101 O2 ? ? A G 39 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 101 N4 ? ? A G 39 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 40 N1 ? ? ? 1_555 A C 100 N3 ? ? A G 40 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A G 40 N2 ? ? ? 1_555 A C 100 O2 ? ? A G 40 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A G 40 O6 ? ? ? 1_555 A C 100 N4 ? ? A G 40 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 47 N7 ? ? A U 41 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog104 hydrog ? ? A U 41 O2 ? ? ? 1_555 A A 47 N6 ? ? A U 41 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog105 hydrog ? ? A A 42 N7 ? ? ? 1_555 A A 57 N6 ? ? A A 42 A A 57 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog106 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 59 O2 ? ? A G 43 A U 59 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog107 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 59 N3 ? ? A G 43 A U 59 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog108 hydrog ? ? A G 43 N7 ? ? ? 1_555 A G 79 N2 ? ? A G 43 A G 79 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog109 hydrog ? ? A U 44 N3 ? ? ? 1_555 A A 58 N1 ? ? A U 44 A A 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A U 44 O4 ? ? ? 1_555 A A 58 N6 ? ? A U 44 A A 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A U 45 N3 ? ? ? 1_555 A A 57 N1 ? ? A U 45 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A U 45 O4 ? ? ? 1_555 A A 57 N6 ? ? A U 45 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A U 45 N3 ? ? ? 1_555 A A 58 N1 ? ? A U 45 A A 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A U 45 O4 ? ? ? 1_555 A A 58 N6 ? ? A U 45 A A 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 46 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 46 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 46 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A A 47 N6 ? ? ? 1_555 A A 55 N3 ? ? A A 47 A A 55 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog119 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 82 O2 ? ? A G 48 A C 82 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog120 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 82 N3 ? ? A G 48 A C 82 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog121 hydrog ? ? A G 51 N2 ? ? ? 1_555 A U 89 O2 ? ? A G 51 A U 89 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog122 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 52 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 52 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 52 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A G 56 N7 ? ? ? 1_555 A G 80 N1 ? ? A G 56 A G 80 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog126 hydrog ? ? A G 56 O6 ? ? ? 1_555 A G 80 N2 ? ? A G 56 A G 80 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog127 hydrog ? ? A A 60 N1 ? ? ? 1_555 A G 78 N1 ? ? A A 60 A G 78 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog128 hydrog ? ? A A 60 N6 ? ? ? 1_555 A G 78 O6 ? ? A A 60 A G 78 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog129 hydrog ? ? A C 61 N3 ? ? ? 1_555 A G 77 N1 ? ? A C 61 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? A C 61 N4 ? ? ? 1_555 A G 77 O6 ? ? A C 61 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? A C 61 O2 ? ? ? 1_555 A G 77 N2 ? ? A C 61 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? A C 62 N3 ? ? ? 1_555 A G 76 N1 ? ? A C 62 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? A C 62 N4 ? ? ? 1_555 A G 76 O6 ? ? A C 62 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? A C 62 O2 ? ? ? 1_555 A G 76 N2 ? ? A C 62 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? A U 63 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 63 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? A U 63 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 63 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? A G 64 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 64 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? A G 64 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 64 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? A G 64 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 64 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? A C 65 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 65 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? A C 65 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 65 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? A C 65 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 65 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? A C 66 N3 ? ? ? 1_555 A C 72 N4 ? ? A C 66 A C 72 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog144 hydrog ? ? A U 67 O2 ? ? ? 1_555 A C 72 N4 ? ? A U 67 A C 72 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog145 hydrog ? ? A G 83 N1 ? ? ? 1_555 A U 99 O2 ? ? A G 83 A U 99 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog146 hydrog ? ? A G 83 O6 ? ? ? 1_555 A U 99 N3 ? ? A G 83 A U 99 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog147 hydrog ? ? A C 84 N3 ? ? ? 1_555 A G 98 N1 ? ? A C 84 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? A C 84 N4 ? ? ? 1_555 A G 98 O6 ? ? A C 84 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? A C 84 O2 ? ? ? 1_555 A G 98 N2 ? ? A C 84 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? A G 85 N1 ? ? ? 1_555 A C 97 N3 ? ? A G 85 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? A G 85 N2 ? ? ? 1_555 A C 97 O2 ? ? A G 85 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? A G 85 O6 ? ? ? 1_555 A C 97 N4 ? ? A G 85 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? A G 86 N1 ? ? ? 1_555 A C 96 N3 ? ? A G 86 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? A G 86 N2 ? ? ? 1_555 A C 96 O2 ? ? A G 86 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? A G 86 O6 ? ? ? 1_555 A C 96 N4 ? ? A G 86 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? A G 87 N1 ? ? ? 1_555 A C 95 N3 ? ? A G 87 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? A G 87 N2 ? ? ? 1_555 A C 95 O2 ? ? A G 87 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? A G 87 O6 ? ? ? 1_555 A C 95 N4 ? ? A G 87 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? A U 88 N3 ? ? ? 1_555 A A 92 N7 ? ? A U 88 A A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog160 hydrog ? ? A U 88 O2 ? ? ? 1_555 A A 92 N6 ? ? A U 88 A A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog161 hydrog ? ? A C 113 N3 ? ? ? 1_555 A G 128 N1 ? ? A C 113 A G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog162 hydrog ? ? A C 113 N4 ? ? ? 1_555 A G 128 O6 ? ? A C 113 A G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog163 hydrog ? ? A C 113 O2 ? ? ? 1_555 A G 128 N2 ? ? A C 113 A G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog164 hydrog ? ? A C 114 N3 ? ? ? 1_555 A G 127 N1 ? ? A C 114 A G 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog165 hydrog ? ? A C 114 N4 ? ? ? 1_555 A G 127 O6 ? ? A C 114 A G 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog166 hydrog ? ? A C 114 O2 ? ? ? 1_555 A G 127 N2 ? ? A C 114 A G 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog167 hydrog ? ? A A 115 N1 ? ? ? 1_555 A U 126 N3 ? ? A A 115 A U 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog168 hydrog ? ? A A 115 N6 ? ? ? 1_555 A U 126 O4 ? ? A A 115 A U 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog169 hydrog ? ? A C 116 N3 ? ? ? 1_555 A G 125 N1 ? ? A C 116 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog170 hydrog ? ? A C 116 N4 ? ? ? 1_555 A G 125 O6 ? ? A C 116 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog171 hydrog ? ? A C 116 O2 ? ? ? 1_555 A G 125 N2 ? ? A C 116 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog172 hydrog ? ? A A 117 N1 ? ? ? 1_555 A U 124 N3 ? ? A A 117 A U 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog173 hydrog ? ? A A 117 N6 ? ? ? 1_555 A U 124 O4 ? ? A A 117 A U 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog174 hydrog ? ? A C 118 N3 ? ? ? 1_555 A G 123 N1 ? ? A C 118 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog175 hydrog ? ? A C 118 N4 ? ? ? 1_555 A G 123 O6 ? ? A C 118 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog176 hydrog ? ? A C 118 O2 ? ? ? 1_555 A G 123 N2 ? ? A C 118 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog177 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 143 N3 ? ? C G 1 C C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog178 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 143 O2 ? ? C G 1 C C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog179 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 143 N4 ? ? C G 1 C C 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog180 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 142 N3 ? ? C G 2 C C 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog181 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 142 O2 ? ? C G 2 C C 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog182 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 142 N4 ? ? C G 2 C C 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog183 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 141 N3 ? ? C G 3 C C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog184 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 141 O2 ? ? C G 3 C C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog185 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 141 N4 ? ? C G 3 C C 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog186 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 140 N1 ? ? C C 4 C G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog187 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 140 O6 ? ? C C 4 C G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog188 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 140 N2 ? ? C C 4 C G 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 304 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 308 ? 1_555 89.5 ? 2 O ? G HOH . ? A HOH 304 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 316 ? 1_555 179.4 ? 3 O ? G HOH . ? A HOH 308 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 316 ? 1_555 90.1 ? 4 O ? G HOH . ? A HOH 304 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 317 ? 1_555 90.7 ? 5 O ? G HOH . ? A HOH 308 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 317 ? 1_555 179.3 ? 6 O ? G HOH . ? A HOH 316 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 317 ? 1_555 89.7 ? 7 O ? G HOH . ? A HOH 304 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 318 ? 1_555 90.7 ? 8 O ? G HOH . ? A HOH 308 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 318 ? 1_555 90.1 ? 9 O ? G HOH . ? A HOH 316 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 318 ? 1_555 89.6 ? 10 O ? G HOH . ? A HOH 317 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 318 ? 1_555 89.3 ? 11 O ? G HOH . ? A HOH 304 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 89.3 ? 12 O ? G HOH . ? A HOH 308 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 89.9 ? 13 O ? G HOH . ? A HOH 316 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 90.3 ? 14 O ? G HOH . ? A HOH 317 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 90.7 ? 15 O ? G HOH . ? A HOH 318 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 319 ? 1_555 179.9 ? 16 O ? G HOH . ? A HOH 301 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 302 ? 1_555 89.5 ? 17 O ? G HOH . ? A HOH 301 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 303 ? 1_555 179.6 ? 18 O ? G HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 303 ? 1_555 90.1 ? 19 O ? G HOH . ? A HOH 301 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 310 ? 1_555 90.4 ? 20 O ? G HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 310 ? 1_555 90.4 ? 21 O ? G HOH . ? A HOH 303 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 310 ? 1_555 89.6 ? 22 O ? G HOH . ? A HOH 301 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 314 ? 1_555 89.8 ? 23 O ? G HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 314 ? 1_555 90.1 ? 24 O ? G HOH . ? A HOH 303 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 314 ? 1_555 90.2 ? 25 O ? G HOH . ? A HOH 310 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 314 ? 1_555 179.5 ? 26 O ? G HOH . ? A HOH 301 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 315 ? 1_555 90.6 ? 27 O ? G HOH . ? A HOH 302 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 315 ? 1_555 179.8 ? 28 O ? G HOH . ? A HOH 303 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 315 ? 1_555 89.8 ? 29 O ? G HOH . ? A HOH 310 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 315 ? 1_555 89.4 ? 30 O ? G HOH . ? A HOH 314 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 315 ? 1_555 90.1 ? 31 O ? H HOH . ? C HOH 301 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 302 ? 1_555 89.7 ? 32 O ? H HOH . ? C HOH 301 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 303 ? 1_555 90.0 ? 33 O ? H HOH . ? C HOH 302 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 303 ? 1_555 90.1 ? 34 O ? H HOH . ? C HOH 301 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 305 ? 1_555 89.6 ? 35 O ? H HOH . ? C HOH 302 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 305 ? 1_555 90.6 ? 36 O ? H HOH . ? C HOH 303 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 305 ? 1_555 179.2 ? 37 O ? H HOH . ? C HOH 301 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 306 ? 1_555 179.6 ? 38 O ? H HOH . ? C HOH 302 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 306 ? 1_555 90.7 ? 39 O ? H HOH . ? C HOH 303 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 306 ? 1_555 89.9 ? 40 O ? H HOH . ? C HOH 305 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 306 ? 1_555 90.5 ? 41 O ? H HOH . ? C HOH 301 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 307 ? 1_555 89.3 ? 42 O ? H HOH . ? C HOH 302 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 307 ? 1_555 179.0 ? 43 O ? H HOH . ? C HOH 303 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 307 ? 1_555 89.9 ? 44 O ? H HOH . ? C HOH 305 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 307 ? 1_555 89.5 ? 45 O ? H HOH . ? C HOH 306 ? 1_555 MG ? F MG . ? C MG 201 ? 1_555 O ? H HOH . ? C HOH 307 ? 1_555 90.3 ? # _pdbx_entry_details.entry_id 9NAK _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A A 110 ? ? O A HOH 301 ? ? 2.16 2 1 OP1 A U 49 ? ? N2 A G 93 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A U 11 ? ? C6 A U 11 ? ? N1 A U 11 ? ? 126.52 122.70 3.82 0.50 N 2 1 C6 A U 11 ? ? N1 A U 11 ? ? "C1'" A U 11 ? ? 112.56 121.20 -8.64 1.40 N 3 1 C2 A U 11 ? ? N1 A U 11 ? ? "C1'" A U 11 ? ? 129.03 117.70 11.33 1.20 N 4 1 C2 A C 135 ? ? N1 A C 135 ? ? "C1'" A C 135 ? ? 125.52 118.80 6.72 1.10 N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9NAK _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9NAK _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.67 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 646397 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Scaffold RNA attached to tRNA' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9NAK _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9NAK _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9NAK _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 144 ? A C 144 2 1 Y 1 A A 145 ? A A 145 3 1 Y 1 A C 146 ? A C 146 4 1 Y 1 A C 147 ? A C 147 5 1 Y 1 A C 148 ? A C 148 6 1 Y 1 A U 149 ? A U 149 7 1 Y 1 A G 150 ? A G 150 8 1 Y 1 A A 151 ? A A 151 9 1 Y 1 A A 152 ? A A 152 10 1 Y 1 A G 153 ? A G 153 11 1 Y 1 A G 154 ? A G 154 12 1 Y 1 A U 155 ? A U 155 13 1 Y 1 C C 5 ? B C 5 14 1 Y 1 C A 6 ? B A 6 15 1 Y 1 C C 7 ? B C 7 16 1 Y 1 C U 8 ? B U 8 17 1 Y 1 C G 9 ? B G 9 18 1 Y 1 C U 10 ? B U 10 19 1 Y 1 C U 11 ? B U 11 20 1 Y 1 C U 12 ? B U 12 21 1 Y 1 C C 13 ? B C 13 22 1 Y 1 C A 14 ? B A 14 23 1 Y 1 C C 15 ? B C 15 24 1 Y 1 C U 16 ? B U 16 25 1 Y 1 C G 17 ? B G 17 26 1 Y 1 C U 18 ? B U 18 27 1 Y 1 C U 19 ? B U 19 28 1 Y 1 C G 20 ? B G 20 29 1 Y 1 C C 21 ? B C 21 30 1 Y 1 C G 22 ? B G 22 31 1 Y 1 C C 23 ? B C 23 32 1 Y 1 C U 24 ? B U 24 33 1 Y 1 C A 25 ? B A 25 34 1 Y 1 C C 26 ? B C 26 35 1 Y 1 C A 27 ? B A 27 36 1 Y 1 C U 28 ? B U 28 37 1 Y 1 C C 29 ? B C 29 38 1 Y 1 C U 30 ? B U 30 39 1 Y 1 C G 31 ? B G 31 40 1 Y 1 C G 32 ? B G 32 41 1 Y 1 C C 33 ? B C 33 42 1 Y 1 C G 34 ? B G 34 43 1 Y 1 C G 35 ? B G 35 44 1 Y 1 C A 36 ? B A 36 45 1 Y 1 C G 37 ? B G 37 46 1 Y 1 C C 38 ? B C 38 47 1 Y 1 C G 39 ? B G 39 48 1 Y 1 C G 40 ? B G 40 49 1 Y 1 C U 41 ? B U 41 50 1 Y 1 C A 42 ? B A 42 51 1 Y 1 C G 43 ? B G 43 52 1 Y 1 C U 44 ? B U 44 53 1 Y 1 C U 45 ? B U 45 54 1 Y 1 C C 46 ? B C 46 55 1 Y 1 C A 47 ? B A 47 56 1 Y 1 C G 48 ? B G 48 57 1 Y 1 C U 49 ? B U 49 58 1 Y 1 C C 50 ? B C 50 59 1 Y 1 C G 51 ? B G 51 60 1 Y 1 C G 52 ? B G 52 61 1 Y 1 C U 53 ? B U 53 62 1 Y 1 C U 54 ? B U 54 63 1 Y 1 C A 55 ? B A 55 64 1 Y 1 C G 56 ? B G 56 65 1 Y 1 C A 57 ? B A 57 66 1 Y 1 C A 58 ? B A 58 67 1 Y 1 C U 59 ? B U 59 68 1 Y 1 C A 60 ? B A 60 69 1 Y 1 C C 61 ? B C 61 70 1 Y 1 C C 62 ? B C 62 71 1 Y 1 C U 63 ? B U 63 72 1 Y 1 C G 64 ? B G 64 73 1 Y 1 C C 65 ? B C 65 74 1 Y 1 C C 66 ? B C 66 75 1 Y 1 C U 67 ? B U 67 76 1 Y 1 C G 68 ? B G 68 77 1 Y 1 C U 69 ? B U 69 78 1 Y 1 C C 70 ? B C 70 79 1 Y 1 C A 71 ? B A 71 80 1 Y 1 C C 72 ? B C 72 81 1 Y 1 C G 73 ? B G 73 82 1 Y 1 C C 74 ? B C 74 83 1 Y 1 C A 75 ? B A 75 84 1 Y 1 C G 76 ? B G 76 85 1 Y 1 C G 77 ? B G 77 86 1 Y 1 C G 78 ? B G 78 87 1 Y 1 C G 79 ? B G 79 88 1 Y 1 C G 80 ? B G 80 89 1 Y 1 C U 81 ? B U 81 90 1 Y 1 C C 82 ? B C 82 91 1 Y 1 C G 83 ? B G 83 92 1 Y 1 C C 84 ? B C 84 93 1 Y 1 C G 85 ? B G 85 94 1 Y 1 C G 86 ? B G 86 95 1 Y 1 C G 87 ? B G 87 96 1 Y 1 C U 88 ? B U 88 97 1 Y 1 C U 89 ? B U 89 98 1 Y 1 C C 90 ? B C 90 99 1 Y 1 C G 91 ? B G 91 100 1 Y 1 C A 92 ? B A 92 101 1 Y 1 C G 93 ? B G 93 102 1 Y 1 C U 94 ? B U 94 103 1 Y 1 C C 95 ? B C 95 104 1 Y 1 C C 96 ? B C 96 105 1 Y 1 C C 97 ? B C 97 106 1 Y 1 C G 98 ? B G 98 107 1 Y 1 C U 99 ? B U 99 108 1 Y 1 C C 100 ? B C 100 109 1 Y 1 C C 101 ? B C 101 110 1 Y 1 C G 102 ? B G 102 111 1 Y 1 C U 103 ? B U 103 112 1 Y 1 C U 104 ? B U 104 113 1 Y 1 C C 105 ? B C 105 114 1 Y 1 C G 106 ? B G 106 115 1 Y 1 C G 107 ? B G 107 116 1 Y 1 C C 108 ? B C 108 117 1 Y 1 C C 109 ? B C 109 118 1 Y 1 C A 110 ? B A 110 119 1 Y 1 C G 111 ? B G 111 120 1 Y 1 C G 112 ? B G 112 121 1 Y 1 C C 113 ? B C 113 122 1 Y 1 C C 114 ? B C 114 123 1 Y 1 C A 115 ? B A 115 124 1 Y 1 C C 116 ? B C 116 125 1 Y 1 C A 117 ? B A 117 126 1 Y 1 C C 118 ? B C 118 127 1 Y 1 C G 119 ? B G 119 128 1 Y 1 C A 120 ? B A 120 129 1 Y 1 C A 121 ? B A 121 130 1 Y 1 C A 122 ? B A 122 131 1 Y 1 C G 123 ? B G 123 132 1 Y 1 C U 124 ? B U 124 133 1 Y 1 C G 125 ? B G 125 134 1 Y 1 C U 126 ? B U 126 135 1 Y 1 C G 127 ? B G 127 136 1 Y 1 C G 128 ? B G 128 137 1 Y 1 C A 129 ? B A 129 138 1 Y 1 C G 130 ? B G 130 139 1 Y 1 C U 131 ? B U 131 140 1 Y 1 C G 132 ? B G 132 141 1 Y 1 C A 133 ? B A 133 142 1 Y 1 C C 134 ? B C 134 143 1 Y 1 C C 135 ? B C 135 144 1 Y 1 C A 136 ? B A 136 145 1 Y 1 C G 137 ? B G 137 146 1 Y 1 C U 138 ? B U 138 147 1 Y 1 C G 139 ? B G 139 148 1 Y 1 C C 144 ? B C 144 149 1 Y 1 C A 145 ? B A 145 150 1 Y 1 C C 146 ? B C 146 151 1 Y 1 C C 147 ? B C 147 152 1 Y 1 C C 148 ? B C 148 153 1 Y 1 C U 149 ? B U 149 154 1 Y 1 C G 150 ? B G 150 155 1 Y 1 C A 151 ? B A 151 156 1 Y 1 C A 152 ? B A 152 157 1 Y 1 C G 153 ? B G 153 158 1 Y 1 C G 154 ? B G 154 159 1 Y 1 C U 155 ? B U 155 160 1 Y 1 C A 156 ? B A 156 161 1 Y 1 C A 157 ? B A 157 162 1 Y 1 C A 158 ? B A 158 163 1 Y 1 C C 159 ? B C 159 164 1 Y 1 C U 160 ? B U 160 165 1 Y 1 C U 161 ? B U 161 166 1 Y 1 C G 162 ? B G 162 167 1 Y 1 C U 163 ? B U 163 168 1 Y 1 C A 164 ? B A 164 169 1 Y 1 C G 165 ? B G 165 170 1 Y 1 C C 166 ? B C 166 171 1 Y 1 C G 167 ? B G 167 172 1 Y 1 C C 168 ? B C 168 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 MG MG MG N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # _em_admin.current_status REL _em_admin.deposition_date 2025-02-12 _em_admin.deposition_site RCSB _em_admin.entry_id 9NAK _em_admin.last_update 2026-03-04 _em_admin.map_release_date 2026-03-04 _em_admin.title 'RNA scaffold attached to tRNA' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32644 _em_entity_assembly_naturalsource.organism unidentified _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 905931 _em_entity_assembly_recombinant.organism 'in vitro transcription vector pT7-TP(deltai)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.19.2_4158 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? MASKING ? 4 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9NAK 'double helix' 9NAK 'a-form double helix' 9NAK 'parallel strands' 9NAK 'hairpin loop' 9NAK 'bulge loop' 9NAK 'mismatched base pair' 9NAK 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 143 1_555 -0.033 -0.370 -1.224 -11.615 3.761 -5.134 1 A_G1:C143_A A 1 ? A 143 ? 19 1 1 A G 2 1_555 A C 142 1_555 -0.145 -0.216 -0.139 -6.763 2.143 -2.786 2 A_G2:C142_A A 2 ? A 142 ? 19 1 1 A G 3 1_555 A C 141 1_555 -0.187 -0.202 0.507 1.557 6.447 -1.106 3 A_G3:C141_A A 3 ? A 141 ? 19 1 1 A C 4 1_555 A G 140 1_555 0.184 -0.231 0.738 5.410 -0.318 0.490 4 A_C4:G140_A A 4 ? A 140 ? 19 1 1 A C 5 1_555 A G 139 1_555 0.174 -0.048 -0.212 -0.719 1.431 -0.689 5 A_C5:G139_A A 5 ? A 139 ? 19 1 1 A A 6 1_555 A U 138 1_555 0.153 -0.058 -0.182 1.307 7.171 -0.236 6 A_A6:U138_A A 6 ? A 138 ? 20 1 1 A C 7 1_555 A G 137 1_555 0.162 -0.195 -0.406 9.639 6.836 -2.382 7 A_C7:G137_A A 7 ? A 137 ? 19 1 1 A U 8 1_555 A A 136 1_555 -0.256 -0.198 -0.935 1.159 6.677 0.394 8 A_U8:A136_A A 8 ? A 136 ? 20 1 1 A G 9 1_555 A C 135 1_555 -0.053 -0.036 0.823 14.031 5.618 -0.158 9 A_G9:C135_A A 9 ? A 135 ? 19 1 1 A U 11 1_555 A C 134 1_555 -1.172 -2.640 2.121 15.650 7.423 1.490 10 A_U11:C134_A A 11 ? A 134 ? 18 1 1 A U 12 1_555 A A 133 1_555 1.171 0.088 0.961 9.085 -4.960 19.984 11 A_U12:A133_A A 12 ? A 133 ? ? 1 1 A C 13 1_555 A G 132 1_555 0.223 -0.108 0.191 9.432 1.700 0.658 12 A_C13:G132_A A 13 ? A 132 ? 19 1 1 A A 14 1_555 A U 131 1_555 0.075 -0.149 0.275 2.251 -7.442 3.716 13 A_A14:U131_A A 14 ? A 131 ? 20 1 1 A C 15 1_555 A G 130 1_555 0.244 0.065 0.164 -2.457 -9.454 -12.017 14 A_C15:G130_A A 15 ? A 130 ? 19 1 1 A U 16 1_555 A A 129 1_555 -0.226 -0.099 0.715 -0.259 -6.845 -3.821 15 A_U16:A129_A A 16 ? A 129 ? 20 1 1 A C 113 1_555 A G 128 1_555 0.157 -0.109 -0.118 4.248 0.392 0.048 16 A_C113:G128_A A 113 ? A 128 ? 19 1 1 A C 114 1_555 A G 127 1_555 0.191 -0.155 -0.057 -0.308 -5.675 -1.528 17 A_C114:G127_A A 114 ? A 127 ? 19 1 1 A A 115 1_555 A U 126 1_555 0.033 -0.161 0.078 0.297 5.124 -4.120 18 A_A115:U126_A A 115 ? A 126 ? 20 1 1 A C 116 1_555 A G 125 1_555 0.190 -0.138 0.276 4.085 4.381 3.188 19 A_C116:G125_A A 116 ? A 125 ? 19 1 1 A A 117 1_555 A U 124 1_555 0.086 -0.238 -1.172 -8.022 -2.589 1.565 20 A_A117:U124_A A 117 ? A 124 ? 20 1 1 A C 118 1_555 A G 123 1_555 0.124 -0.312 -0.957 2.000 2.284 -2.361 21 A_C118:G123_A A 118 ? A 123 ? 19 1 1 A G 17 1_555 A C 159 1_555 -0.218 -0.053 -0.350 -10.895 -9.960 2.575 22 A_G17:C159_A A 17 ? A 159 ? 19 1 1 A U 18 1_555 A A 158 1_555 -0.210 -0.178 -1.155 0.955 -11.044 -5.614 23 A_U18:A158_A A 18 ? A 158 ? 20 1 1 A U 19 1_555 A A 157 1_555 -1.051 0.695 0.486 1.909 -22.886 1.843 24 A_U19:A157_A A 19 ? A 157 ? ? ? 1 A C 72 1_555 A C 66 1_555 -2.491 -0.847 -0.386 -18.344 3.213 -52.671 25 A_C72:C66_A A 72 ? A 66 ? ? ? 1 A G 73 1_555 A C 65 1_555 -0.139 -0.079 -0.488 -6.278 7.578 1.402 26 A_G73:C65_A A 73 ? A 65 ? 19 1 1 A C 74 1_555 A G 64 1_555 0.169 -0.296 -0.224 -1.763 7.142 -1.043 27 A_C74:G64_A A 74 ? A 64 ? 19 1 1 A A 75 1_555 A U 63 1_555 0.110 -0.269 -0.029 -4.837 -2.587 2.657 28 A_A75:U63_A A 75 ? A 63 ? 20 1 1 A G 76 1_555 A C 62 1_555 -0.160 -0.272 -0.456 -2.765 2.224 -1.567 29 A_G76:C62_A A 76 ? A 62 ? 19 1 1 A G 77 1_555 A C 61 1_555 -0.176 -0.138 -0.415 -5.325 1.295 0.754 30 A_G77:C61_A A 77 ? A 61 ? 19 1 1 A G 78 1_555 A A 60 1_555 2.013 0.820 -0.501 -1.943 2.498 -22.797 31 A_G78:A60_A A 78 ? A 60 ? 8 1 1 A G 43 1_555 A U 59 1_555 -2.841 -1.065 -1.927 -20.305 -2.971 -7.560 32 A_G43:U59_A A 43 ? A 59 ? 28 1 1 A U 44 1_555 A A 58 1_555 -0.162 -0.369 -1.234 -4.413 7.143 -8.577 33 A_U44:A58_A A 44 ? A 58 ? 20 1 1 A U 45 1_555 A A 57 1_555 -0.118 -0.110 -0.775 1.555 8.429 -7.385 34 A_U45:A57_A A 45 ? A 57 ? 20 1 1 A C 46 1_555 A G 56 1_555 0.148 -0.207 -0.137 0.168 -0.382 1.625 35 A_C46:G56_A A 46 ? A 56 ? 19 1 1 A A 47 1_555 A U 41 1_555 -3.981 -1.726 -0.211 0.399 1.648 -97.624 36 A_A47:U41_A A 47 ? A 41 ? 24 4 1 A G 48 1_555 A C 82 1_555 0.787 4.665 1.479 -5.343 7.191 178.767 37 A_G48:C82_A A 48 ? A 82 ? 22 2 1 A G 51 1_555 A U 89 1_555 0.360 5.159 -1.320 -22.845 -9.053 82.574 38 A_G51:U89_A A 51 ? A 89 ? ? 2 1 A A 92 1_555 A U 88 1_555 -4.613 -3.669 0.844 -2.749 16.501 -88.492 39 A_A92:U88_A A 92 ? A 88 ? 24 4 1 A C 95 1_555 A G 87 1_555 0.111 -0.225 -0.817 12.041 -1.618 0.351 40 A_C95:G87_A A 95 ? A 87 ? 19 1 1 A C 96 1_555 A G 86 1_555 0.159 -0.191 -0.411 -1.815 5.039 -0.559 41 A_C96:G86_A A 96 ? A 86 ? 19 1 1 A C 97 1_555 A G 85 1_555 0.146 -0.165 -0.348 3.029 1.389 0.456 42 A_C97:G85_A A 97 ? A 85 ? 19 1 1 A G 98 1_555 A C 84 1_555 -0.188 -0.133 0.099 -1.534 -1.228 1.275 43 A_G98:C84_A A 98 ? A 84 ? 19 1 1 A U 99 1_555 A G 83 1_555 1.665 -0.501 -0.073 -0.337 1.591 -9.380 44 A_U99:G83_A A 99 ? A 83 ? 28 1 1 A C 100 1_555 A G 40 1_555 0.193 -0.142 -0.187 0.275 -2.742 -0.316 45 A_C100:G40_A A 100 ? A 40 ? 19 1 1 A C 101 1_555 A G 39 1_555 0.253 -0.128 -0.535 8.161 -8.997 0.735 46 A_C101:G39_A A 101 ? A 39 ? 19 1 1 A G 102 1_555 A C 38 1_555 -0.214 -0.134 -0.190 -3.851 5.877 2.136 47 A_G102:C38_A A 102 ? A 38 ? 19 1 1 A U 103 1_555 A G 37 1_555 1.434 -0.306 -0.432 2.213 4.580 4.246 48 A_U103:G37_A A 103 ? A 37 ? 28 1 1 A U 104 1_555 A A 36 1_555 -0.112 -0.162 -0.612 1.505 2.281 -0.478 49 A_U104:A36_A A 104 ? A 36 ? 20 1 1 A C 105 1_555 A G 35 1_555 0.190 -0.200 -0.553 7.258 -0.970 -1.945 50 A_C105:G35_A A 105 ? A 35 ? 19 1 1 A G 106 1_555 A G 34 1_555 4.287 1.916 -0.419 -5.659 -8.634 52.128 51 A_G106:G34_A A 106 ? A 34 ? ? ? 1 A G 107 1_555 A C 33 1_555 -0.173 -0.129 0.265 -2.367 5.797 1.466 52 A_G107:C33_A A 107 ? A 33 ? 19 1 1 A C 108 1_555 A G 32 1_555 0.179 -0.188 0.338 3.448 2.858 1.292 53 A_C108:G32_A A 108 ? A 32 ? 19 1 1 A C 109 1_555 A G 31 1_555 0.204 -0.085 0.163 3.543 -1.173 0.511 54 A_C109:G31_A A 109 ? A 31 ? 19 1 1 A A 110 1_555 A U 30 1_555 0.104 0.022 -0.329 1.175 2.806 0.652 55 A_A110:U30_A A 110 ? A 30 ? 20 1 1 A G 111 1_555 A C 29 1_555 -0.240 -0.122 -0.332 9.229 1.532 1.951 56 A_G111:C29_A A 111 ? A 29 ? 19 1 1 A U 160 1_555 A U 28 1_555 -2.818 -1.904 0.798 5.263 -5.183 14.431 57 A_U160:U28_A A 160 ? A 28 ? 16 1 1 A U 161 1_555 A A 27 1_555 -0.612 0.316 0.498 -5.624 5.465 11.314 58 A_U161:A27_A A 161 ? A 27 ? 20 1 1 A G 162 1_555 A C 26 1_555 -0.147 -0.146 0.126 -6.113 5.179 0.082 59 A_G162:C26_A A 162 ? A 26 ? 19 1 1 A U 163 1_555 A A 25 1_555 -0.268 -0.034 0.324 0.425 4.320 -2.318 60 A_U163:A25_A A 163 ? A 25 ? 20 1 1 A A 164 1_555 A U 24 1_555 0.081 0.007 0.208 3.856 -2.287 -1.253 61 A_A164:U24_A A 164 ? A 24 ? 20 1 1 A G 165 1_555 A C 23 1_555 -0.240 -0.258 0.869 -2.448 5.338 4.863 62 A_G165:C23_A A 165 ? A 23 ? 19 1 1 A C 166 1_555 A G 22 1_555 0.243 -0.108 0.416 1.276 -2.085 -1.931 63 A_C166:G22_A A 166 ? A 22 ? 19 1 1 A G 167 1_555 A C 21 1_555 -0.102 -0.114 -0.688 -0.886 -2.454 1.358 64 A_G167:C21_A A 167 ? A 21 ? 19 1 1 A C 168 1_555 A G 20 1_555 0.167 -0.151 -0.609 4.230 -2.464 1.476 65 A_C168:G20_A A 168 ? A 20 ? 19 1 1 B G 1 1_555 B C 143 1_555 -0.215 -0.272 -1.071 -5.720 -3.473 0.401 66 C_G1:C143_C C 1 ? C 143 ? 19 1 1 B G 2 1_555 B C 142 1_555 -0.116 -0.198 -0.932 -12.946 1.337 -4.387 67 C_G2:C142_C C 2 ? C 142 ? 19 1 1 B G 3 1_555 B C 141 1_555 -0.218 -0.278 0.605 -0.190 -1.645 -2.997 68 C_G3:C141_C C 3 ? C 141 ? 19 1 1 B C 4 1_555 B G 140 1_555 0.103 -0.439 1.351 -2.052 -2.123 -0.291 69 C_C4:G140_C C 4 ? C 140 ? 19 1 1 A G 52 1_555 A C 90 1_555 -0.171 -0.149 0.108 -8.176 -6.781 1.847 70 A_G52:C90_A A 52 ? A 90 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 143 1_555 A G 2 1_555 A C 142 1_555 1.360 -0.972 2.907 -6.184 10.476 35.009 -2.680 -2.820 2.268 16.800 9.916 37.000 1 AA_G1G2:C142C143_AA A 1 ? A 143 ? A 2 ? A 142 ? 1 A G 2 1_555 A C 142 1_555 A G 3 1_555 A C 141 1_555 0.268 -1.053 2.868 -4.726 0.919 42.766 -1.515 -0.772 2.802 1.256 6.457 43.024 2 AA_G2G3:C141C142_AA A 2 ? A 142 ? A 3 ? A 141 ? 1 A G 3 1_555 A C 141 1_555 A C 4 1_555 A G 140 1_555 0.220 -2.180 3.057 -3.228 -0.976 37.927 -3.226 -0.723 3.081 -1.498 4.954 38.071 3 AA_G3C4:G140C141_AA A 3 ? A 141 ? A 4 ? A 140 ? 1 A C 4 1_555 A G 140 1_555 A C 5 1_555 A G 139 1_555 0.450 -1.698 3.226 8.087 -0.291 35.502 -2.679 0.411 3.260 -0.469 -13.053 36.383 4 AA_C4C5:G139G140_AA A 4 ? A 140 ? A 5 ? A 139 ? 1 A C 5 1_555 A G 139 1_555 A A 6 1_555 A U 138 1_555 -0.245 -1.328 2.896 -0.553 8.653 29.200 -3.965 0.375 2.416 16.704 1.068 30.433 5 AA_C5A6:U138G139_AA A 5 ? A 139 ? A 6 ? A 138 ? 1 A A 6 1_555 A U 138 1_555 A C 7 1_555 A G 137 1_555 0.018 -1.457 2.913 1.873 0.974 31.018 -2.884 0.283 2.863 1.818 -3.497 31.088 6 AA_A6C7:G137U138_AA A 6 ? A 138 ? A 7 ? A 137 ? 1 A C 7 1_555 A G 137 1_555 A U 8 1_555 A A 136 1_555 -0.040 -1.465 3.103 5.549 24.387 35.353 -3.981 0.506 1.759 35.245 -8.020 43.073 7 AA_C7U8:A136G137_AA A 7 ? A 137 ? A 8 ? A 136 ? 1 A U 8 1_555 A A 136 1_555 A G 9 1_555 A C 135 1_555 0.201 -1.873 2.975 -9.927 2.180 25.623 -4.403 -2.554 2.555 4.687 21.343 27.534 8 AA_U8G9:C135A136_AA A 8 ? A 136 ? A 9 ? A 135 ? 1 A G 9 1_555 A C 135 1_555 A U 11 1_555 A C 134 1_555 -1.496 -2.680 4.089 3.448 13.594 42.048 -4.974 2.346 3.000 18.343 -4.653 44.224 9 AA_G9U11:C134C135_AA A 9 ? A 135 ? A 11 ? A 134 ? 1 A U 11 1_555 A C 134 1_555 A U 12 1_555 A A 133 1_555 0.405 -1.079 3.388 8.226 -0.608 50.565 -1.205 0.127 3.422 -0.706 -9.557 51.190 10 AA_U11U12:A133C134_AA A 11 ? A 134 ? A 12 ? A 133 ? 1 A U 12 1_555 A A 133 1_555 A C 13 1_555 A G 132 1_555 -0.651 -1.419 2.893 5.273 3.628 24.008 -4.211 2.837 2.458 8.529 -12.396 24.835 11 AA_U12C13:G132A133_AA A 12 ? A 133 ? A 13 ? A 132 ? 1 A C 13 1_555 A G 132 1_555 A A 14 1_555 A U 131 1_555 0.320 -1.575 3.195 0.820 4.005 30.049 -3.775 -0.456 2.973 7.680 -1.572 30.319 12 AA_C13A14:U131G132_AA A 13 ? A 132 ? A 14 ? A 131 ? 1 A A 14 1_555 A U 131 1_555 A C 15 1_555 A G 130 1_555 -0.533 -1.731 3.247 3.081 0.927 36.705 -2.862 1.252 3.151 1.469 -4.881 36.841 13 AA_A14C15:G130U131_AA A 14 ? A 131 ? A 15 ? A 130 ? 1 A C 15 1_555 A G 130 1_555 A U 16 1_555 A A 129 1_555 0.268 -1.293 3.124 -2.967 3.724 29.738 -3.194 -1.078 2.904 7.197 5.736 30.108 14 AA_C15U16:A129G130_AA A 15 ? A 130 ? A 16 ? A 129 ? 1 A U 16 1_555 A A 129 1_555 A C 113 1_555 A G 128 1_555 -0.120 -1.904 2.888 6.603 3.325 37.113 -3.304 0.912 2.654 5.161 -10.249 37.817 15 AA_U16C113:G128A129_AA A 16 ? A 129 ? A 113 ? A 128 ? 1 A C 113 1_555 A G 128 1_555 A C 114 1_555 A G 127 1_555 0.113 -1.719 3.259 3.557 4.400 37.677 -3.174 0.264 3.044 6.765 -5.469 38.085 16 AA_C113C114:G127G128_AA A 113 ? A 128 ? A 114 ? A 127 ? 1 A C 114 1_555 A G 127 1_555 A A 115 1_555 A U 126 1_555 -0.820 -1.311 2.845 -2.154 11.696 31.191 -3.861 1.140 2.270 20.828 3.835 33.329 17 AA_C114A115:U126G127_AA A 114 ? A 127 ? A 115 ? A 126 ? 1 A A 115 1_555 A U 126 1_555 A C 116 1_555 A G 125 1_555 0.750 -2.002 3.064 -0.900 4.575 28.407 -4.935 -1.687 2.691 9.243 1.819 28.780 18 AA_A115C116:G125U126_AA A 115 ? A 126 ? A 116 ? A 125 ? 1 A C 116 1_555 A G 125 1_555 A A 117 1_555 A U 124 1_555 -0.390 -1.499 3.313 8.741 17.190 35.222 -3.977 1.479 2.224 26.132 -13.287 40.008 19 AA_C116A117:U124G125_AA A 116 ? A 125 ? A 117 ? A 124 ? 1 A A 117 1_555 A U 124 1_555 A C 118 1_555 A G 123 1_555 -0.620 -1.520 2.956 -0.875 1.752 30.370 -3.209 1.025 2.882 3.339 1.669 30.432 20 AA_A117C118:G123U124_AA A 117 ? A 124 ? A 118 ? A 123 ? 1 A G 17 1_555 A C 159 1_555 A U 18 1_555 A A 158 1_555 -0.891 -1.150 2.976 5.231 5.359 35.484 -2.499 2.069 2.627 8.674 -8.466 36.241 21 AA_G17U18:A158C159_AA A 17 ? A 159 ? A 18 ? A 158 ? 1 A U 18 1_555 A A 158 1_555 A U 19 1_555 A A 157 1_555 1.214 -1.165 3.508 -0.757 3.913 23.629 -4.124 -3.179 3.235 9.469 1.833 23.958 22 AA_U18U19:A157A158_AA A 18 ? A 158 ? A 19 ? A 157 ? 1 A C 72 1_555 A C 66 1_555 A G 73 1_555 A C 65 1_555 2.583 -0.991 3.105 -6.755 7.264 35.420 -2.415 -4.881 2.348 11.660 10.842 36.740 23 AA_C72G73:C65C66_AA A 72 ? A 66 ? A 73 ? A 65 ? 1 A G 73 1_555 A C 65 1_555 A C 74 1_555 A G 64 1_555 -0.492 -1.678 3.108 -0.994 6.724 36.903 -3.408 0.647 2.783 10.512 1.554 37.502 24 AA_G73C74:G64C65_AA A 73 ? A 65 ? A 74 ? A 64 ? 1 A C 74 1_555 A G 64 1_555 A A 75 1_555 A U 63 1_555 0.906 -1.257 2.965 0.519 18.430 34.012 -3.773 -1.320 2.056 29.016 -0.816 38.558 25 AA_C74A75:U63G64_AA A 74 ? A 64 ? A 75 ? A 63 ? 1 A A 75 1_555 A U 63 1_555 A G 76 1_555 A C 62 1_555 0.708 -2.020 2.954 5.941 7.009 25.595 -5.795 -0.239 2.426 15.211 -12.894 27.168 26 AA_A75G76:C62U63_AA A 75 ? A 63 ? A 76 ? A 62 ? 1 A G 76 1_555 A C 62 1_555 A G 77 1_555 A C 61 1_555 -0.128 -1.671 3.040 -0.637 6.101 33.854 -3.670 0.128 2.709 10.372 1.083 34.389 27 AA_G76G77:C61C62_AA A 76 ? A 62 ? A 77 ? A 61 ? 1 A G 77 1_555 A C 61 1_555 A G 78 1_555 A A 60 1_555 -1.286 -1.800 2.970 2.632 3.670 41.398 -2.871 2.052 2.725 5.173 -3.710 41.632 28 AA_G77G78:A60C61_AA A 77 ? A 61 ? A 78 ? A 60 ? 1 A G 78 1_555 A A 60 1_555 A G 43 1_555 A U 59 1_555 -1.962 -3.472 4.146 23.613 22.256 40.157 -5.394 3.731 0.980 27.631 -29.315 51.203 29 AA_G78G43:U59A60_AA A 78 ? A 60 ? A 43 ? A 59 ? 1 A G 43 1_555 A U 59 1_555 A U 44 1_555 A A 58 1_555 -0.703 -0.980 2.835 -5.656 1.668 47.167 -1.333 0.475 2.862 2.075 7.036 47.513 30 AA_G43U44:A58U59_AA A 43 ? A 59 ? A 44 ? A 58 ? 1 A U 44 1_555 A A 58 1_555 A U 45 1_555 A A 57 1_555 0.270 -1.418 3.143 0.757 7.274 29.931 -3.967 -0.374 2.737 13.826 -1.438 30.792 31 AA_U44U45:A57A58_AA A 44 ? A 58 ? A 45 ? A 57 ? 1 A U 45 1_555 A A 57 1_555 A C 46 1_555 A G 56 1_555 1.607 -1.928 3.293 3.277 7.070 28.789 -5.173 -2.465 2.909 13.901 -6.442 29.804 32 AA_U45C46:G56A57_AA A 45 ? A 57 ? A 46 ? A 56 ? 1 A C 46 1_555 A G 56 1_555 A A 47 1_555 A U 41 1_555 -1.240 -0.721 3.174 0.361 4.112 66.949 -0.807 1.136 3.124 3.724 -0.327 67.062 33 AA_C46A47:U41G56_AA A 46 ? A 56 ? A 47 ? A 41 ? 1 A A 47 1_555 A U 41 1_555 A G 48 1_555 A C 82 1_555 2.599 -2.752 2.149 -4.025 -4.756 -65.814 2.649 2.278 2.106 4.367 -3.695 -66.075 34 AA_A47G48:C82U41_AA A 47 ? A 41 ? A 48 ? A 82 ? 1 A G 51 1_555 A U 89 1_555 A A 92 1_555 A U 88 1_555 0.407 -3.939 -2.394 158.266 -59.254 157.071 -2.047 -0.409 -1.998 -29.665 -79.235 177.816 35 AA_G51A92:U88U89_AA A 51 ? A 89 ? A 92 ? A 88 ? 1 A A 92 1_555 A U 88 1_555 A C 95 1_555 A G 87 1_555 2.165 -2.410 2.980 6.128 3.086 93.029 -1.711 -1.385 3.023 2.124 -4.219 93.224 36 AA_A92C95:G87U88_AA A 92 ? A 88 ? A 95 ? A 87 ? 1 A C 95 1_555 A G 87 1_555 A C 96 1_555 A G 86 1_555 -0.423 -2.130 3.503 -2.213 6.594 30.069 -5.298 0.361 3.002 12.500 4.196 30.845 37 AA_C95C96:G86G87_AA A 95 ? A 87 ? A 96 ? A 86 ? 1 A C 96 1_555 A G 86 1_555 A C 97 1_555 A G 85 1_555 -0.273 -1.771 3.002 1.377 1.584 31.062 -3.572 0.746 2.896 2.953 -2.567 31.131 38 AA_C96C97:G85G86_AA A 96 ? A 86 ? A 97 ? A 85 ? 1 A C 97 1_555 A G 85 1_555 A G 98 1_555 A C 84 1_555 -0.061 -1.692 2.998 -4.043 11.173 29.219 -4.842 -0.512 2.206 21.083 7.629 31.494 39 AA_C97G98:C84G85_AA A 97 ? A 85 ? A 98 ? A 84 ? 1 A G 98 1_555 A C 84 1_555 A U 99 1_555 A G 83 1_555 -0.606 -1.711 3.054 1.200 1.217 44.041 -2.386 0.912 2.991 1.623 -1.600 44.073 40 AA_G98U99:G83C84_AA A 98 ? A 84 ? A 99 ? A 83 ? 1 A U 99 1_555 A G 83 1_555 A C 100 1_555 A G 40 1_555 0.527 -1.706 2.892 4.286 8.761 28.337 -4.788 -0.293 2.325 17.262 -8.445 29.936 41 AA_U99C100:G40G83_AA A 99 ? A 83 ? A 100 ? A 40 ? 1 A C 100 1_555 A G 40 1_555 A C 101 1_555 A G 39 1_555 0.457 -1.289 3.010 -0.226 7.643 33.969 -3.178 -0.794 2.663 12.880 0.380 34.794 42 AA_C100C101:G39G40_AA A 100 ? A 40 ? A 101 ? A 39 ? 1 A C 101 1_555 A G 39 1_555 A G 102 1_555 A C 38 1_555 -0.199 -1.895 3.423 -8.053 13.798 26.632 -6.007 -1.063 2.175 27.078 15.804 30.982 43 AA_C101G102:C38G39_AA A 101 ? A 39 ? A 102 ? A 38 ? 1 A G 102 1_555 A C 38 1_555 A U 103 1_555 A G 37 1_555 0.109 -1.549 3.020 2.299 1.923 39.758 -2.474 0.083 2.947 2.823 -3.375 39.867 44 AA_G102U103:G37C38_AA A 102 ? A 38 ? A 103 ? A 37 ? 1 A U 103 1_555 A G 37 1_555 A U 104 1_555 A A 36 1_555 -0.632 -1.845 3.079 4.402 6.601 26.080 -5.335 2.286 2.410 14.213 -9.479 27.240 45 AA_U103U104:A36G37_AA A 103 ? A 37 ? A 104 ? A 36 ? 1 A U 104 1_555 A A 36 1_555 A C 105 1_555 A G 35 1_555 0.629 -1.101 3.019 1.675 4.543 35.664 -2.370 -0.802 2.887 7.375 -2.720 35.981 46 AA_U104C105:G35A36_AA A 104 ? A 36 ? A 105 ? A 35 ? 1 A C 105 1_555 A G 35 1_555 A G 106 1_555 A G 34 1_555 2.571 -1.342 3.325 4.177 2.781 41.837 -2.166 -3.128 3.463 3.878 -5.824 42.123 47 AA_C105G106:G34G35_AA A 105 ? A 35 ? A 106 ? A 34 ? 1 A G 106 1_555 A G 34 1_555 A G 107 1_555 A C 33 1_555 -3.141 -1.636 2.869 -2.303 12.470 12.241 -10.945 9.227 1.254 45.414 8.388 17.608 48 AA_G106G107:C33G34_AA A 106 ? A 34 ? A 107 ? A 33 ? 1 A G 107 1_555 A C 33 1_555 A C 108 1_555 A G 32 1_555 -0.125 -1.826 3.010 -0.900 0.956 33.965 -3.263 0.083 2.962 1.636 1.541 33.989 49 AA_G107C108:G32C33_AA A 107 ? A 33 ? A 108 ? A 32 ? 1 A C 108 1_555 A G 32 1_555 A C 109 1_555 A G 31 1_555 -0.027 -1.858 2.974 3.452 4.841 33.372 -3.866 0.529 2.669 8.347 -5.952 33.882 50 AA_C108C109:G31G32_AA A 108 ? A 32 ? A 109 ? A 31 ? 1 A C 109 1_555 A G 31 1_555 A A 110 1_555 A U 30 1_555 0.099 -1.661 2.937 4.071 14.152 29.762 -4.800 0.370 1.964 25.669 -7.384 33.132 51 AA_C109A110:U30G31_AA A 109 ? A 31 ? A 110 ? A 30 ? 1 A A 110 1_555 A U 30 1_555 A G 111 1_555 A C 29 1_555 0.707 -1.754 3.245 2.831 4.986 25.226 -5.239 -0.829 2.910 11.232 -6.377 25.859 52 AA_A110G111:C29U30_AA A 110 ? A 30 ? A 111 ? A 29 ? 1 A G 111 1_555 A C 29 1_555 A U 160 1_555 A U 28 1_555 4.363 -4.056 2.960 -3.729 1.766 -0.670 10.468 -35.469 6.081 -34.585 -72.998 -4.180 53 AA_G111U160:U28C29_AA A 111 ? A 29 ? A 160 ? A 28 ? 1 A U 160 1_555 A U 28 1_555 A U 161 1_555 A A 27 1_555 -0.177 -1.876 3.413 0.713 4.019 41.953 -3.030 0.321 3.225 5.598 -0.993 42.143 54 AA_U160U161:A27U28_AA A 160 ? A 28 ? A 161 ? A 27 ? 1 A U 161 1_555 A A 27 1_555 A G 162 1_555 A C 26 1_555 -0.518 -1.888 2.958 4.297 3.593 29.574 -4.269 1.753 2.616 6.960 -8.323 30.088 55 AA_U161G162:C26A27_AA A 161 ? A 27 ? A 162 ? A 26 ? 1 A G 162 1_555 A C 26 1_555 A U 163 1_555 A A 25 1_555 -0.467 -1.639 2.984 -1.191 1.234 31.546 -3.217 0.659 2.935 2.267 2.189 31.591 56 AA_G162U163:A25C26_AA A 162 ? A 26 ? A 163 ? A 25 ? 1 A U 163 1_555 A A 25 1_555 A A 164 1_555 A U 24 1_555 0.086 -1.384 2.744 0.086 8.933 31.377 -3.683 -0.141 2.275 16.113 -0.156 32.593 57 AA_U163A164:U24A25_AA A 163 ? A 25 ? A 164 ? A 24 ? 1 A A 164 1_555 A U 24 1_555 A G 165 1_555 A C 23 1_555 0.211 -2.479 3.363 -10.708 -0.137 24.990 -5.245 -3.200 3.030 -0.301 23.421 27.154 58 AA_A164G165:C23U24_AA A 164 ? A 24 ? A 165 ? A 23 ? 1 A G 165 1_555 A C 23 1_555 A C 166 1_555 A G 22 1_555 -0.147 -2.324 3.062 3.614 0.420 33.510 -4.072 0.799 3.002 0.725 -6.244 33.702 59 AA_G165C166:G22C23_AA A 165 ? A 23 ? A 166 ? A 22 ? 1 A C 166 1_555 A G 22 1_555 A G 167 1_555 A C 21 1_555 -0.682 -1.636 2.890 3.559 16.429 28.618 -4.940 1.645 1.641 30.173 -6.536 33.100 60 AA_C166G167:C21G22_AA A 166 ? A 22 ? A 167 ? A 21 ? 1 A G 167 1_555 A C 21 1_555 A C 168 1_555 A G 20 1_555 0.187 -1.868 2.933 -1.559 1.155 32.803 -3.478 -0.567 2.856 2.044 2.758 32.858 61 AA_G167C168:G20C21_AA A 167 ? A 21 ? A 168 ? A 20 ? 1 A C 168 1_555 A G 20 1_555 B G 1 1_555 B C 143 1_555 -0.326 -3.913 4.141 2.824 0.557 -14.600 14.497 1.838 4.271 -2.166 10.975 -14.880 62 AC_C168G1:C143G20_CA A 168 ? A 20 ? C 1 ? C 143 ? 1 B G 1 1_555 B C 143 1_555 B G 2 1_555 B C 142 1_555 0.024 -1.549 3.486 -0.741 8.638 35.198 -3.720 -0.144 3.033 14.023 1.202 36.217 63 CC_G1G2:C142C143_CC C 1 ? C 143 ? C 2 ? C 142 ? 1 B G 2 1_555 B C 142 1_555 B G 3 1_555 B C 141 1_555 0.483 -1.419 2.804 -9.735 3.949 37.529 -2.522 -1.692 2.452 5.996 14.780 38.920 64 CC_G2G3:C141C142_CC C 2 ? C 142 ? C 3 ? C 141 ? 1 B G 3 1_555 B C 141 1_555 B C 4 1_555 B G 140 1_555 0.689 -2.299 3.279 -3.323 -1.252 36.242 -3.505 -1.566 3.280 -2.007 5.326 36.410 65 CC_G3C4:G140C141_CC C 3 ? C 141 ? C 4 ? C 140 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9NAK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K MG N O P # loop_ #