HEADER DNA BINDING PROTEIN/DNA 13-FEB-25 9NB0 TITLE ISORETICULAR, POROUS CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN TITLE 2 REPE54 AND ASYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE TITLE 3 COGNATE REPE54 SEQUENCE AND ADDITIONAL EXPANSION SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: N-TERMINAL 6XHISTAG SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PETDUET KEYWDS DNA, PROTEIN, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.D.SNOW REVDAT 1 18-FEB-26 9NB0 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 19481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5500 - 7.7000 0.96 1268 142 0.1424 0.1453 REMARK 3 2 7.6900 - 6.1200 0.97 1237 144 0.1883 0.2112 REMARK 3 3 6.1100 - 5.3500 0.97 1261 140 0.1853 0.1938 REMARK 3 4 5.3400 - 4.8600 0.98 1266 130 0.1836 0.1836 REMARK 3 5 4.8600 - 4.5100 0.98 1236 135 0.1736 0.2433 REMARK 3 6 4.5100 - 4.2400 0.98 1256 156 0.1646 0.2013 REMARK 3 7 4.2400 - 4.0300 0.98 1265 141 0.1640 0.2116 REMARK 3 8 4.0300 - 3.8600 0.99 1271 134 0.1659 0.1770 REMARK 3 9 3.8600 - 3.7100 1.00 1276 143 0.1997 0.2132 REMARK 3 10 3.7100 - 3.5800 1.00 1267 145 0.2098 0.2076 REMARK 3 11 3.5800 - 3.4700 0.99 1273 139 0.2240 0.2770 REMARK 3 12 3.4700 - 3.3700 0.97 1227 140 0.2621 0.2802 REMARK 3 13 3.3700 - 3.2800 0.97 1230 137 0.3006 0.3032 REMARK 3 14 3.2800 - 3.2000 0.95 1186 137 0.3437 0.3910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.332 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 109.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 165.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3271 REMARK 3 ANGLE : 0.726 4698 REMARK 3 CHIRALITY : 0.044 517 REMARK 3 PLANARITY : 0.006 385 REMARK 3 DIHEDRAL : 27.146 1371 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5647 -42.3247 -16.2172 REMARK 3 T TENSOR REMARK 3 T11: 1.4713 T22: 1.5129 REMARK 3 T33: 1.2533 T12: -0.0717 REMARK 3 T13: 0.2166 T23: -0.3950 REMARK 3 L TENSOR REMARK 3 L11: 5.6994 L22: 4.0457 REMARK 3 L33: 1.1621 L12: -1.1878 REMARK 3 L13: 1.5935 L23: 0.1063 REMARK 3 S TENSOR REMARK 3 S11: 0.2950 S12: 1.0444 S13: 0.5801 REMARK 3 S21: -0.3401 S22: 0.2862 S23: -1.0905 REMARK 3 S31: -0.0863 S32: 0.3190 S33: -0.4976 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8524 -76.3921 -47.7499 REMARK 3 T TENSOR REMARK 3 T11: 2.9517 T22: 2.6697 REMARK 3 T33: 2.3172 T12: 0.2144 REMARK 3 T13: 0.1118 T23: -1.1797 REMARK 3 L TENSOR REMARK 3 L11: 5.8456 L22: 9.2873 REMARK 3 L33: 8.0002 L12: -5.0540 REMARK 3 L13: -5.8750 L23: 8.1209 REMARK 3 S TENSOR REMARK 3 S11: 1.2966 S12: -0.3495 S13: 1.0338 REMARK 3 S21: -1.3596 S22: -0.4410 S23: -1.0294 REMARK 3 S31: -2.9146 S32: -1.1511 S33: -0.8524 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7660 -74.6878 -46.1928 REMARK 3 T TENSOR REMARK 3 T11: 2.5020 T22: 2.7328 REMARK 3 T33: 2.2285 T12: 0.2113 REMARK 3 T13: 0.2878 T23: -1.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.1526 L22: 5.0143 REMARK 3 L33: 7.2464 L12: -1.6659 REMARK 3 L13: -2.3123 L23: 10.0467 REMARK 3 S TENSOR REMARK 3 S11: 0.6528 S12: 0.0774 S13: 0.7358 REMARK 3 S21: -0.5265 S22: -0.2440 S23: -0.7845 REMARK 3 S31: -0.7825 S32: -0.9168 S33: -0.3705 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2953 -39.3480 -14.0336 REMARK 3 T TENSOR REMARK 3 T11: 1.4923 T22: 1.1275 REMARK 3 T33: 1.1813 T12: -0.0559 REMARK 3 T13: 0.1964 T23: -0.2039 REMARK 3 L TENSOR REMARK 3 L11: 9.4620 L22: 4.2361 REMARK 3 L33: 6.7010 L12: 0.5641 REMARK 3 L13: 0.7190 L23: 1.8584 REMARK 3 S TENSOR REMARK 3 S11: 0.7558 S12: 0.6826 S13: 1.0177 REMARK 3 S21: -0.9111 S22: 0.0708 S23: -1.0789 REMARK 3 S31: -1.1661 S32: 0.3320 S33: -0.7047 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5008 -64.5152 -6.0684 REMARK 3 T TENSOR REMARK 3 T11: 0.9805 T22: 1.3709 REMARK 3 T33: 2.2649 T12: -0.0479 REMARK 3 T13: -0.1263 T23: -0.5178 REMARK 3 L TENSOR REMARK 3 L11: 3.9308 L22: 7.3457 REMARK 3 L33: 6.3963 L12: 4.8462 REMARK 3 L13: 1.1755 L23: 0.9131 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: 0.9970 S13: -3.4048 REMARK 3 S21: -1.2328 S22: 0.2827 S23: -0.1809 REMARK 3 S31: 0.8369 S32: -0.8374 S33: -0.0303 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 33 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5877 -65.5755 -17.2517 REMARK 3 T TENSOR REMARK 3 T11: 1.1513 T22: 1.4661 REMARK 3 T33: 1.5856 T12: -0.0644 REMARK 3 T13: -0.0907 T23: -0.8302 REMARK 3 L TENSOR REMARK 3 L11: 5.3174 L22: 5.4071 REMARK 3 L33: 7.5892 L12: -2.3237 REMARK 3 L13: -0.6847 L23: -0.0746 REMARK 3 S TENSOR REMARK 3 S11: 0.1602 S12: 1.3337 S13: -1.3104 REMARK 3 S21: -1.5049 S22: 0.1314 S23: 0.0428 REMARK 3 S31: 0.3496 S32: -0.0232 S33: -0.2945 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5497 -63.0002 3.6633 REMARK 3 T TENSOR REMARK 3 T11: 1.4932 T22: 1.2996 REMARK 3 T33: 1.8185 T12: 0.0840 REMARK 3 T13: 0.0021 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 4.2116 L22: 2.1624 REMARK 3 L33: 3.9856 L12: -0.8754 REMARK 3 L13: -4.1283 L23: 0.9941 REMARK 3 S TENSOR REMARK 3 S11: -1.8984 S12: 0.3519 S13: -3.0524 REMARK 3 S21: 2.2653 S22: 0.5158 S23: -1.3388 REMARK 3 S31: -0.4467 S32: -0.0518 S33: 1.3718 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0012 -68.6426 -13.5427 REMARK 3 T TENSOR REMARK 3 T11: 1.0685 T22: 1.8490 REMARK 3 T33: 2.6159 T12: -0.0208 REMARK 3 T13: -0.1379 T23: -0.6225 REMARK 3 L TENSOR REMARK 3 L11: 3.1788 L22: 7.8382 REMARK 3 L33: 6.4559 L12: 3.4340 REMARK 3 L13: -2.0555 L23: -5.6305 REMARK 3 S TENSOR REMARK 3 S11: -0.4892 S12: 0.4816 S13: -4.9633 REMARK 3 S21: -0.5482 S22: -0.6655 S23: -1.9741 REMARK 3 S31: 2.7667 S32: -2.2315 S33: 0.8948 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 126 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9054 -71.7889 -5.9039 REMARK 3 T TENSOR REMARK 3 T11: 1.0512 T22: 1.5492 REMARK 3 T33: 2.8776 T12: 0.1279 REMARK 3 T13: -0.2457 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 4.4897 L22: 4.6270 REMARK 3 L33: 9.4842 L12: 1.8197 REMARK 3 L13: -4.0142 L23: 0.8102 REMARK 3 S TENSOR REMARK 3 S11: 1.2149 S12: -0.3825 S13: -3.8402 REMARK 3 S21: -1.5315 S22: 0.6210 S23: 0.7126 REMARK 3 S31: 0.4763 S32: 1.4946 S33: -1.7106 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 141 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4628 -61.7004 -9.6646 REMARK 3 T TENSOR REMARK 3 T11: 1.1489 T22: 1.4691 REMARK 3 T33: 1.6537 T12: -0.1801 REMARK 3 T13: -0.1539 T23: -0.6593 REMARK 3 L TENSOR REMARK 3 L11: 8.2093 L22: 6.6461 REMARK 3 L33: 2.6789 L12: -0.4249 REMARK 3 L13: -1.4965 L23: 1.8720 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: 1.1711 S13: -1.5696 REMARK 3 S21: 0.4886 S22: -0.2764 S23: 1.2101 REMARK 3 S31: 0.7590 S32: -1.2274 S33: 0.1537 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 173 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1093 -56.4378 -0.8012 REMARK 3 T TENSOR REMARK 3 T11: 0.7822 T22: 1.3427 REMARK 3 T33: 1.5267 T12: -0.0737 REMARK 3 T13: 0.0065 T23: -0.2612 REMARK 3 L TENSOR REMARK 3 L11: 2.6549 L22: 4.0774 REMARK 3 L33: 6.9101 L12: 0.6514 REMARK 3 L13: -0.6958 L23: -4.2215 REMARK 3 S TENSOR REMARK 3 S11: -0.3584 S12: 0.3579 S13: -3.6339 REMARK 3 S21: 0.1239 S22: 0.1795 S23: 0.8106 REMARK 3 S31: 0.4584 S32: -0.3065 S33: 0.4995 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 193 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0383 -43.0095 -2.3444 REMARK 3 T TENSOR REMARK 3 T11: 1.2717 T22: 1.4862 REMARK 3 T33: 1.2700 T12: -0.1469 REMARK 3 T13: -0.0481 T23: -0.5561 REMARK 3 L TENSOR REMARK 3 L11: 5.8678 L22: 4.5844 REMARK 3 L33: 6.7405 L12: -2.5831 REMARK 3 L13: -0.8035 L23: -4.1806 REMARK 3 S TENSOR REMARK 3 S11: 0.6581 S12: 0.1750 S13: 0.5711 REMARK 3 S21: 0.2513 S22: -1.1541 S23: 0.1449 REMARK 3 S31: -1.1262 S32: 0.1463 S33: 0.5045 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8557 -50.0831 -7.4768 REMARK 3 T TENSOR REMARK 3 T11: 0.7473 T22: 1.1644 REMARK 3 T33: 0.8647 T12: -0.0743 REMARK 3 T13: -0.1911 T23: -0.2035 REMARK 3 L TENSOR REMARK 3 L11: 9.8944 L22: 8.6367 REMARK 3 L33: 7.5292 L12: -0.8965 REMARK 3 L13: -4.3759 L23: -6.1551 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: 1.0435 S13: -0.5540 REMARK 3 S21: -0.8586 S22: 0.1840 S23: 1.2656 REMARK 3 S31: 0.7769 S32: -1.8223 S33: -0.1272 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9NB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1000290023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19630 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.02144 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 500MM LITHIUM SULFATE, 20MM MAGNESIUM REMARK 280 ACETATE, 50MM MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.99647 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.61850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.89127 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.99647 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.61850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 69.89127 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 97 -165.27 -118.63 REMARK 500 ARG C 145 75.39 -114.72 REMARK 500 PHE C 208 -66.82 -107.03 REMARK 500 THR C 246 0.25 -66.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 92.1 REMARK 620 N 1 DBREF 9NB0 A 1 31 PDB 9NB0 9NB0 1 31 DBREF 9NB0 B 12 42 PDB 9NB0 9NB0 12 42 DBREF 9NB0 C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 9NB0 MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9NB0 ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9NB0 GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9NB0 SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9NB0 HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9NB0 HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9NB0 HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9NB0 HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9NB0 HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9NB0 HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9NB0 GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9NB0 SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9NB0 PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DG DG DC DT DT DG SEQRES 3 A 31 DA DT DG DA DG SEQRES 1 B 31 DG DC DT DC DA DT DC DA DA DG DC DC DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 GLY C 141 1 7 HELIX 7 AA7 SER C 152 THR C 154 5 3 HELIX 8 AA8 ASN C 159 TYR C 172 1 14 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 229 O HIS C 237 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.15 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.27 CRYST1 73.530 119.237 139.791 90.00 90.63 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013600 0.000000 0.000150 0.00000 SCALE2 0.000000 0.008387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007154 0.00000 CONECT 1726 3073 CONECT 1753 3073 CONECT 3073 1726 1753 MASTER 502 0 1 12 10 0 0 6 3028 3 3 27 END