HEADER VIRUS LIKE PARTICLE 19-FEB-25 9NEK TITLE CAPSID STRUCTURE OF THE SYNGNATHUS SCOVELLI CHAPPARVOVIRUS VIRUS-LIKE TITLE 2 PARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE STRUCTURAL PROTEIN VP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNGNATHUS SCOVELLI CHAPPARVOVIRUS; SOURCE 3 ORGANISM_TAXID: 2662396; SOURCE 4 EXPRESSION_SYSTEM: AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 46015; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS PARVOVIRUS, FISH VIRUS, VIRUS CAPSID, T=1, ICOSAHEDRAL VIRUS KEYWDS 2 PARTICLE, CHAPPARVOVIRUS, CHAPHAMAPARVOVIRUS, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR J.J.PENZES,J.T.KAELBER REVDAT 2 30-JUL-25 9NEK 1 JRNL REVDAT 1 05-MAR-25 9NEK 0 JRNL AUTH J.J.PENZES,J.T.KAELBER JRNL TITL CAPSID STRUCTURE OF THE FISH PATHOGEN SYNGNATHUS SCOVELLI JRNL TITL 2 CHAPPARVOVIRUS OFFERS A NEW PERSPECTIVE ON PARVOVIRUS JRNL TITL 3 STRUCTURAL BIOLOGY. JRNL REF VIRUSES V. 17 2025 JRNL REFN ESSN 1999-4915 JRNL PMID 40431691 JRNL DOI 10.3390/V17050679 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, CRYOSPARC, COOT, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.930 REMARK 3 NUMBER OF PARTICLES : 2202 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9NEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1000293204. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SYNGNATHUS SCOVELLI REMARK 245 CHAPPARVOVIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.05 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : FRONT BLOTTED ONLY REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 11910 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS TALOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3100.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.18_B42531. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 485.59244 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 484.46210 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 483.76351 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00001 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 484.26901 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 484.26902 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 242.32759 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 634.42187 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 91.16374 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 241.82210 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 634.73428 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 391.27637 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 634.73429 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 392.28737 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 240.81109 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 392.28737 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 241.82209 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 633.72329 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 634.92738 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 391.78186 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 242.13450 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 242.13452 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 634.92737 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 92.48716 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 391.78187 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 242.13451 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -150.65836 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 484.26902 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 485.28002 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 -1.01100 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 634.42188 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 92.17473 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 241.31659 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 484.46211 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 484.77451 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 484.58144 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 634.73429 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 92.99264 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 242.44693 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 392.28737 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 243.45792 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -150.46527 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 241.82210 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -149.45427 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 91.98165 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 484.46211 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.50550 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 -1.32342 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 484.26902 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 -0.00001 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 484.26901 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 634.42188 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 393.10528 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 241.94143 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 485.28002 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 1.01100 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 484.26902 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 242.95243 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -149.14186 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 91.16374 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 -0.31241 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.81791 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 483.76351 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 242.13452 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -149.64736 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 390.77086 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 391.78187 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 243.14550 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 633.91638 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 634.92738 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 93.49815 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 241.12351 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 393.10528 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 242.95243 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 633.41088 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.50551 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 -0.31242 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 483.45111 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 485.28001 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 483.25802 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 92.17474 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 242.32758 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 633.41088 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 484.77452 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 485.59243 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 483.45111 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 485.28003 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 483.25802 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 -0.31241 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 484.46210 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 -0.50550 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 485.28002 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 484.26901 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 -1.01100 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 242.95243 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 634.42187 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 392.09428 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 243.45793 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 634.73428 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 91.98165 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -149.45427 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 392.28737 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 242.44693 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 92.99265 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 241.82209 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -150.46527 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -149.64735 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 391.78186 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 241.12351 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 243.14551 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 634.92737 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 390.77086 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 93.49816 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 242.13451 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 633.91638 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 1.01100 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 485.28002 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 484.26901 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -149.14185 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 92.17473 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 241.94143 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.81792 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 484.77451 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 -1.32342 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -149.45427 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 92.99264 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 240.81109 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 92.99265 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 243.45792 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 633.72329 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 243.45793 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -149.45427 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 391.27637 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.81792 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.50550 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 484.58144 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 1.01100 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 -0.00001 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 -1.01100 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -149.14185 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 393.10528 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 241.31659 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00001 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 1.01100 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 -1.01100 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 242.32759 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -149.14186 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 392.09428 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 485.59244 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.81791 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 -0.50550 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 243.14551 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -149.64736 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 92.48716 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 93.49816 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 243.14550 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -150.65836 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -149.64735 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 93.49815 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 242.13450 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 92.17474 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 242.95243 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -150.15286 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 484.77452 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 -0.31242 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 -0.19309 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 485.28003 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 485.28001 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 393.10528 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 242.32758 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -150.15286 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.50551 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 485.59243 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 -0.19309 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 82 REMARK 465 ILE A 83 REMARK 465 GLN A 84 REMARK 465 GLY A 85 REMARK 465 ASN A 86 REMARK 465 THR A 87 REMARK 465 ARG A 357 REMARK 465 SER A 358 REMARK 465 ASP A 359 REMARK 465 PRO A 360 REMARK 465 THR A 361 REMARK 465 SER A 362 REMARK 465 ASP A 363 REMARK 465 VAL A 364 REMARK 465 GLU A 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 39 24.01 -140.24 REMARK 500 THR A 91 33.20 -97.06 REMARK 500 HIS A 215 -135.80 54.96 REMARK 500 SER A 226 59.88 -92.71 REMARK 500 THR A 237 32.14 -97.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-49314 RELATED DB: EMDB REMARK 900 CAPSID STRUCTURE OF THE SYNGNATHUS SCOVELLI CHAPPARVOVIRUS VIRUS- REMARK 900 LIKE PARTICLE DBREF1 9NEK A 1 365 UNP A0A6B9D5B5_9VIRU DBREF2 9NEK A A0A6B9D5B5 1 364 SEQRES 1 A 364 MET LYS PHE SER ASN SER TYR TYR ALA TYR ILE GLU ASN SEQRES 2 A 364 GLN LYS ASN ASP TYR PRO ASP ILE GLY LEU GLU ARG ASN SEQRES 3 A 364 PRO SER GLU TYR GLN THR GLY TYR HIS ARG ILE PRO ASN SEQRES 4 A 364 GLN TYR TRP ALA SER PHE LEU THR PRO LYS ASP TRP PHE SEQRES 5 A 364 ASN LEU ILE TYR ASN ASN LYS ALA PHE ARG VAL VAL GLY SEQRES 6 A 364 ALA ARG CYS THR VAL SER ASN MET ILE PRO LEU THR GLU SEQRES 7 A 364 GLN ALA ALA ILE GLN GLY ASN THR THR ILE THR THR PHE SEQRES 8 A 364 ASN ASN THR ILE TYR ALA LEU CYS TYR THR ASP ASN ASN SEQRES 9 A 364 TYR GLU THR GLU TRP GLU GLU PRO ALA ALA ARG ASP LEU SEQRES 10 A 364 SER PHE MET TRP ARG GLU GLY LEU THR ASN GLY ALA ARG SEQRES 11 A 364 HIS MET LEU PRO THR TYR LYS HIS GLY ILE TYR ARG THR SEQRES 12 A 364 THR THR SER GLN ALA HIS ASN VAL PHE TYR GLY TRP ASP SEQRES 13 A 364 PRO LEU CYS LYS ALA GLU ASN ILE LEU GLU LEU ARG PRO SEQRES 14 A 364 GLY LYS ASN ALA VAL THR PHE GLU TRP HIS ALA LYS GLU SEQRES 15 A 364 GLU ILE TRP LEU ASN THR HIS MET MET GLN GLN PHE ASP SEQRES 16 A 364 PRO THR HIS THR PRO GLY ILE ALA ASN THR ALA THR VAL SEQRES 17 A 364 TYR SER GLN GLU ILE HIS ASN GLN THR HIS SER ASN VAL SEQRES 18 A 364 THR PRO HIS SER HIS LEU ASN ARG TRP ILE SER GLN THR SEQRES 19 A 364 ASP THR ALA PRO ALA THR ALA ARG HIS TRP SER LYS GLN SEQRES 20 A 364 ALA ILE GLN ARG PRO GLY ILE MET GLU GLN GLN PHE ARG SEQRES 21 A 364 TYR PRO ILE PRO ASN TRP PHE ILE LYS MET ILE PRO LEU SEQRES 22 A 364 PHE ASP SER GLN ASN ASN LEU ILE LYS THR THR ALA GLN SEQRES 23 A 364 VAL LEU ILE THR MET GLU LEU THR VAL ASP THR ILE PRO SEQRES 24 A 364 GLN SER LEU ALA ILE ASN MET PRO ILE ILE ASP ASP ILE SEQRES 25 A 364 ILE ALA PRO ASN HIS THR PRO ASN SER VAL PRO TYR CYS SEQRES 26 A 364 MET PHE ARG TYR GLN PRO ILE ILE PRO ILE ASN VAL GLY SEQRES 27 A 364 VAL LEU PRO ALA PRO PRO THR LYS GLY VAL PHE ILE PRO SEQRES 28 A 364 GLU LEU PRO ALA ARG SER ASP PRO THR SER ASP VAL GLU HELIX 1 AA1 TYR A 41 PHE A 45 5 5 HELIX 2 AA2 THR A 47 TYR A 56 1 10 HELIX 3 AA3 HIS A 150 GLY A 155 5 6 HELIX 4 AA4 ASP A 157 ILE A 165 5 9 HELIX 5 AA5 SER A 226 ASP A 236 1 11 HELIX 6 AA6 ALA A 242 SER A 246 5 5 HELIX 7 AA7 LYS A 247 ARG A 252 1 6 HELIX 8 AA8 ILE A 255 GLN A 259 5 5 SHEET 1 AA1 4 LYS A 2 ILE A 11 0 SHEET 2 AA1 4 THR A 284 PRO A 300 -1 O LEU A 294 N PHE A 3 SHEET 3 AA1 4 ASN A 58 GLU A 78 -1 N LEU A 76 O THR A 285 SHEET 4 AA1 4 GLY A 171 HIS A 180 -1 O PHE A 177 N CYS A 68 SHEET 1 AA2 3 ILE A 89 THR A 90 0 SHEET 2 AA2 3 ASN A 58 GLU A 78 -1 N THR A 77 O THR A 90 SHEET 3 AA2 3 LEU A 187 ASN A 188 -1 O LEU A 187 N PHE A 61 SHEET 1 AA3 5 THR A 136 TYR A 142 0 SHEET 2 AA3 5 PRO A 27 ARG A 36 -1 N TYR A 30 O HIS A 139 SHEET 3 AA3 5 ASN A 266 MET A 271 -1 O ILE A 269 N HIS A 35 SHEET 4 AA3 5 ALA A 98 ASP A 103 -1 N LEU A 99 O LYS A 270 SHEET 5 AA3 5 LEU A 166 LEU A 168 -1 O LEU A 166 N CYS A 100 SHEET 1 AA4 3 MET A 192 GLN A 194 0 SHEET 2 AA4 3 VAL A 209 SER A 211 -1 O TYR A 210 N GLN A 193 SHEET 3 AA4 3 VAL A 349 ILE A 351 -1 O ILE A 351 N VAL A 209 SHEET 1 AA5 2 LEU A 274 PHE A 275 0 SHEET 2 AA5 2 LEU A 281 ILE A 282 -1 O ILE A 282 N LEU A 274 SHEET 1 AA6 2 ILE A 314 ASN A 317 0 SHEET 2 AA6 2 TYR A 325 PHE A 328 -1 O TYR A 325 N ASN A 317 CISPEP 1 ILE A 351 PRO A 352 0 -5.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 2850 ALA A 356 MASTER 323 0 0 8 19 0 0 6 2849 1 0 28 END