data_9NEP # _entry.id 9NEP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9NEP pdb_00009nep 10.2210/pdb9nep/pdb WWPDB D_1000293223 ? ? EMDB EMD-49329 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-02-04 ? 2 'EM metadata' 1 0 2026-02-04 ? 3 'Additional map' 1 0 2026-02-04 1 4 'Additional map' 1 0 2026-02-04 2 5 FSC 1 0 2026-02-04 ? 6 'Half map' 1 0 2026-02-04 1 7 'Half map' 1 0 2026-02-04 2 8 Image 1 0 2026-02-04 ? 9 Mask 1 0 2026-02-04 1 10 'Primary map' 1 0 2026-02-04 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 'Additional map' repository 'Initial release' ? ? 5 5 FSC repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 'Half map' repository 'Initial release' ? ? 8 8 Image repository 'Initial release' ? ? 9 9 Mask repository 'Initial release' ? ? 10 10 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9NEP _pdbx_database_status.recvd_initial_deposition_date 2025-02-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of Ro60/minimal misfolded pre-5S rRNA complex' _pdbx_database_related.db_id EMD-49329 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 susan.lea@nih.gov Susan Lea ? 'principal investigator/group leader' 0000-0001-9287-8053 4 sandra.wolin@nih.gov Sandra Wolin ? 'principal investigator/group leader' 0000-0001-6730-0399 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nam, H.' 1 ? 'Deme, J.C.' 2 ? 'Lea, S.M.' 3 ? 'Wolin, S.L.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_id_ASTM CELLB5 _citation.journal_id_CSD 0998 _citation.journal_id_ISSN 0092-8674 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Mechanistic insights into RNA chaperoning by Ro60 and La autoantigens' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2025.12.030 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nam, H.' 1 ? primary 'Deme, J.C.' 2 ? primary 'Sim, S.' 3 ? primary 'Boccitto, M.' 4 ? primary 'Lea, S.M.' 5 ? primary 'Wolin, S.L.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA-binding protein RO60' 60726.523 1 ? ? ? ? 2 polymer syn 'Minimal misfolded pre-5S rRNA' 20386.980 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEALIRLIEDGRGCEVIQEIKSF SQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCRIPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKG GMALALAVTKYKQRNGWSHKDLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTKD ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIH PFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMC MVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI ; ;MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEALIRLIEDGRGCEVIQEIKSF SQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCRIPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKG GMALALAVTKYKQRNGWSHKDLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTKD ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIH PFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMC MVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI ; A ? 2 polyribonucleotide no no GCCUACCCGCACACUACCCUGUUCGCAGGGUCGGCGGUGGUUUUUCAUAGGCUUUUCAAAGUUU GCCUACCCGCACACUACCCUGUUCGCAGGGUCGGCGGUGGUUUUUCAUAGGCUUUUCAAAGUUU B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 GLU n 1 4 SER n 1 5 VAL n 1 6 ASN n 1 7 GLN n 1 8 MET n 1 9 GLN n 1 10 PRO n 1 11 LEU n 1 12 ASN n 1 13 GLU n 1 14 LYS n 1 15 GLN n 1 16 ILE n 1 17 ALA n 1 18 ASN n 1 19 SER n 1 20 GLN n 1 21 ASP n 1 22 GLY n 1 23 TYR n 1 24 VAL n 1 25 TRP n 1 26 GLN n 1 27 VAL n 1 28 THR n 1 29 ASP n 1 30 MET n 1 31 ASN n 1 32 ARG n 1 33 LEU n 1 34 HIS n 1 35 ARG n 1 36 PHE n 1 37 LEU n 1 38 CYS n 1 39 PHE n 1 40 GLY n 1 41 SER n 1 42 GLU n 1 43 GLY n 1 44 GLY n 1 45 THR n 1 46 TYR n 1 47 TYR n 1 48 ILE n 1 49 LYS n 1 50 GLU n 1 51 GLN n 1 52 LYS n 1 53 LEU n 1 54 GLY n 1 55 LEU n 1 56 GLU n 1 57 ASN n 1 58 ALA n 1 59 GLU n 1 60 ALA n 1 61 LEU n 1 62 ILE n 1 63 ARG n 1 64 LEU n 1 65 ILE n 1 66 GLU n 1 67 ASP n 1 68 GLY n 1 69 ARG n 1 70 GLY n 1 71 CYS n 1 72 GLU n 1 73 VAL n 1 74 ILE n 1 75 GLN n 1 76 GLU n 1 77 ILE n 1 78 LYS n 1 79 SER n 1 80 PHE n 1 81 SER n 1 82 GLN n 1 83 GLU n 1 84 GLY n 1 85 ARG n 1 86 THR n 1 87 THR n 1 88 LYS n 1 89 GLN n 1 90 GLU n 1 91 PRO n 1 92 MET n 1 93 LEU n 1 94 PHE n 1 95 ALA n 1 96 LEU n 1 97 ALA n 1 98 ILE n 1 99 CYS n 1 100 SER n 1 101 GLN n 1 102 CYS n 1 103 SER n 1 104 ASP n 1 105 ILE n 1 106 SER n 1 107 THR n 1 108 LYS n 1 109 GLN n 1 110 ALA n 1 111 ALA n 1 112 PHE n 1 113 LYS n 1 114 ALA n 1 115 VAL n 1 116 SER n 1 117 GLU n 1 118 VAL n 1 119 CYS n 1 120 ARG n 1 121 ILE n 1 122 PRO n 1 123 THR n 1 124 HIS n 1 125 LEU n 1 126 PHE n 1 127 THR n 1 128 PHE n 1 129 ILE n 1 130 GLN n 1 131 PHE n 1 132 LYS n 1 133 LYS n 1 134 ASP n 1 135 LEU n 1 136 LYS n 1 137 GLU n 1 138 SER n 1 139 MET n 1 140 LYS n 1 141 CYS n 1 142 GLY n 1 143 MET n 1 144 TRP n 1 145 GLY n 1 146 ARG n 1 147 ALA n 1 148 LEU n 1 149 ARG n 1 150 LYS n 1 151 ALA n 1 152 ILE n 1 153 ALA n 1 154 ASP n 1 155 TRP n 1 156 TYR n 1 157 ASN n 1 158 GLU n 1 159 LYS n 1 160 GLY n 1 161 GLY n 1 162 MET n 1 163 ALA n 1 164 LEU n 1 165 ALA n 1 166 LEU n 1 167 ALA n 1 168 VAL n 1 169 THR n 1 170 LYS n 1 171 TYR n 1 172 LYS n 1 173 GLN n 1 174 ARG n 1 175 ASN n 1 176 GLY n 1 177 TRP n 1 178 SER n 1 179 HIS n 1 180 LYS n 1 181 ASP n 1 182 LEU n 1 183 LEU n 1 184 ARG n 1 185 LEU n 1 186 SER n 1 187 HIS n 1 188 LEU n 1 189 LYS n 1 190 PRO n 1 191 SER n 1 192 SER n 1 193 GLU n 1 194 GLY n 1 195 LEU n 1 196 ALA n 1 197 ILE n 1 198 VAL n 1 199 THR n 1 200 LYS n 1 201 TYR n 1 202 ILE n 1 203 THR n 1 204 LYS n 1 205 GLY n 1 206 TRP n 1 207 LYS n 1 208 GLU n 1 209 VAL n 1 210 HIS n 1 211 GLU n 1 212 LEU n 1 213 TYR n 1 214 LYS n 1 215 GLU n 1 216 LYS n 1 217 ALA n 1 218 LEU n 1 219 SER n 1 220 VAL n 1 221 GLU n 1 222 THR n 1 223 GLU n 1 224 LYS n 1 225 LEU n 1 226 LEU n 1 227 LYS n 1 228 TYR n 1 229 LEU n 1 230 GLU n 1 231 ALA n 1 232 VAL n 1 233 GLU n 1 234 LYS n 1 235 VAL n 1 236 LYS n 1 237 ARG n 1 238 THR n 1 239 LYS n 1 240 ASP n 1 241 GLU n 1 242 LEU n 1 243 GLU n 1 244 VAL n 1 245 ILE n 1 246 HIS n 1 247 LEU n 1 248 ILE n 1 249 GLU n 1 250 GLU n 1 251 HIS n 1 252 ARG n 1 253 LEU n 1 254 VAL n 1 255 ARG n 1 256 GLU n 1 257 HIS n 1 258 LEU n 1 259 LEU n 1 260 THR n 1 261 ASN n 1 262 HIS n 1 263 LEU n 1 264 LYS n 1 265 SER n 1 266 LYS n 1 267 GLU n 1 268 VAL n 1 269 TRP n 1 270 LYS n 1 271 ALA n 1 272 LEU n 1 273 LEU n 1 274 GLN n 1 275 GLU n 1 276 MET n 1 277 PRO n 1 278 LEU n 1 279 THR n 1 280 ALA n 1 281 LEU n 1 282 LEU n 1 283 ARG n 1 284 ASN n 1 285 LEU n 1 286 GLY n 1 287 LYS n 1 288 MET n 1 289 THR n 1 290 ALA n 1 291 ASN n 1 292 SER n 1 293 VAL n 1 294 LEU n 1 295 GLU n 1 296 PRO n 1 297 GLY n 1 298 ASN n 1 299 SER n 1 300 GLU n 1 301 VAL n 1 302 SER n 1 303 LEU n 1 304 VAL n 1 305 CYS n 1 306 GLU n 1 307 LYS n 1 308 LEU n 1 309 CYS n 1 310 ASN n 1 311 GLU n 1 312 LYS n 1 313 LEU n 1 314 LEU n 1 315 LYS n 1 316 LYS n 1 317 ALA n 1 318 ARG n 1 319 ILE n 1 320 HIS n 1 321 PRO n 1 322 PHE n 1 323 HIS n 1 324 ILE n 1 325 LEU n 1 326 ILE n 1 327 ALA n 1 328 LEU n 1 329 GLU n 1 330 THR n 1 331 TYR n 1 332 LYS n 1 333 THR n 1 334 GLY n 1 335 HIS n 1 336 GLY n 1 337 LEU n 1 338 ARG n 1 339 GLY n 1 340 LYS n 1 341 LEU n 1 342 LYS n 1 343 TRP n 1 344 ARG n 1 345 PRO n 1 346 ASP n 1 347 GLU n 1 348 GLU n 1 349 ILE n 1 350 LEU n 1 351 LYS n 1 352 ALA n 1 353 LEU n 1 354 ASP n 1 355 ALA n 1 356 ALA n 1 357 PHE n 1 358 TYR n 1 359 LYS n 1 360 THR n 1 361 PHE n 1 362 LYS n 1 363 THR n 1 364 VAL n 1 365 GLU n 1 366 PRO n 1 367 THR n 1 368 GLY n 1 369 LYS n 1 370 ARG n 1 371 PHE n 1 372 LEU n 1 373 LEU n 1 374 ALA n 1 375 VAL n 1 376 ASP n 1 377 VAL n 1 378 SER n 1 379 ALA n 1 380 SER n 1 381 MET n 1 382 ASN n 1 383 GLN n 1 384 ARG n 1 385 VAL n 1 386 LEU n 1 387 GLY n 1 388 SER n 1 389 ILE n 1 390 LEU n 1 391 ASN n 1 392 ALA n 1 393 SER n 1 394 THR n 1 395 VAL n 1 396 ALA n 1 397 ALA n 1 398 ALA n 1 399 MET n 1 400 CYS n 1 401 MET n 1 402 VAL n 1 403 VAL n 1 404 THR n 1 405 ARG n 1 406 THR n 1 407 GLU n 1 408 LYS n 1 409 ASP n 1 410 SER n 1 411 TYR n 1 412 VAL n 1 413 VAL n 1 414 ALA n 1 415 PHE n 1 416 SER n 1 417 ASP n 1 418 GLU n 1 419 MET n 1 420 VAL n 1 421 PRO n 1 422 CYS n 1 423 PRO n 1 424 VAL n 1 425 THR n 1 426 THR n 1 427 ASP n 1 428 MET n 1 429 THR n 1 430 LEU n 1 431 GLN n 1 432 GLN n 1 433 VAL n 1 434 LEU n 1 435 MET n 1 436 ALA n 1 437 MET n 1 438 SER n 1 439 GLN n 1 440 ILE n 1 441 PRO n 1 442 ALA n 1 443 GLY n 1 444 GLY n 1 445 THR n 1 446 ASP n 1 447 CYS n 1 448 SER n 1 449 LEU n 1 450 PRO n 1 451 MET n 1 452 ILE n 1 453 TRP n 1 454 ALA n 1 455 GLN n 1 456 LYS n 1 457 THR n 1 458 ASN n 1 459 THR n 1 460 PRO n 1 461 ALA n 1 462 ASP n 1 463 VAL n 1 464 PHE n 1 465 ILE n 1 466 VAL n 1 467 PHE n 1 468 THR n 1 469 ASP n 1 470 ASN n 1 471 GLU n 1 472 THR n 1 473 PHE n 1 474 ALA n 1 475 GLY n 1 476 GLY n 1 477 VAL n 1 478 HIS n 1 479 PRO n 1 480 ALA n 1 481 ILE n 1 482 ALA n 1 483 LEU n 1 484 ARG n 1 485 GLU n 1 486 TYR n 1 487 ARG n 1 488 LYS n 1 489 LYS n 1 490 MET n 1 491 ASP n 1 492 ILE n 1 493 PRO n 1 494 ALA n 1 495 LYS n 1 496 LEU n 1 497 ILE n 1 498 VAL n 1 499 CYS n 1 500 GLY n 1 501 MET n 1 502 THR n 1 503 SER n 1 504 ASN n 1 505 GLY n 1 506 PHE n 1 507 THR n 1 508 ILE n 1 509 ALA n 1 510 ASP n 1 511 PRO n 1 512 ASP n 1 513 ASP n 1 514 ARG n 1 515 GLY n 1 516 MET n 1 517 LEU n 1 518 ASP n 1 519 MET n 1 520 CYS n 1 521 GLY n 1 522 PHE n 1 523 ASP n 1 524 THR n 1 525 GLY n 1 526 ALA n 1 527 LEU n 1 528 ASP n 1 529 VAL n 1 530 ILE n 1 531 ARG n 1 532 ASN n 1 533 PHE n 1 534 THR n 1 535 LEU n 1 536 ASP n 1 537 MET n 1 538 ILE n 2 1 G n 2 2 C n 2 3 C n 2 4 U n 2 5 A n 2 6 C n 2 7 C n 2 8 C n 2 9 G n 2 10 C n 2 11 A n 2 12 C n 2 13 A n 2 14 C n 2 15 U n 2 16 A n 2 17 C n 2 18 C n 2 19 C n 2 20 U n 2 21 G n 2 22 U n 2 23 U n 2 24 C n 2 25 G n 2 26 C n 2 27 A n 2 28 G n 2 29 G n 2 30 G n 2 31 U n 2 32 C n 2 33 G n 2 34 G n 2 35 C n 2 36 G n 2 37 G n 2 38 U n 2 39 G n 2 40 G n 2 41 U n 2 42 U n 2 43 U n 2 44 U n 2 45 U n 2 46 C n 2 47 A n 2 48 U n 2 49 A n 2 50 G n 2 51 G n 2 52 C n 2 53 U n 2 54 U n 2 55 U n 2 56 U n 2 57 C n 2 58 A n 2 59 A n 2 60 A n 2 61 G n 2 62 U n 2 63 U n 2 64 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 538 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 64 _pdbx_entity_src_syn.organism_scientific 'Xenopus laevis' _pdbx_entity_src_syn.organism_common_name 'African clawed frog' _pdbx_entity_src_syn.ncbi_taxonomy_id 8355 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 CYS 102 102 102 CYS CYS A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 CYS 119 119 119 CYS CYS A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 GLN 130 130 130 GLN GLN A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 MET 139 139 139 MET MET A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 CYS 141 141 141 CYS CYS A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 MET 143 143 143 MET MET A . n A 1 144 TRP 144 144 144 TRP TRP A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 TRP 155 155 155 TRP TRP A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 MET 162 162 162 MET MET A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 GLN 173 173 173 GLN GLN A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 TRP 177 177 177 TRP TRP A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 HIS 179 179 179 HIS HIS A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 ARG 184 184 184 ARG ARG A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 HIS 187 187 187 HIS HIS A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 PRO 190 190 190 PRO PRO A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 GLU 193 193 193 GLU GLU A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 TYR 201 201 201 TYR TYR A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 LYS 204 204 204 LYS LYS A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 TRP 206 206 206 TRP TRP A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 HIS 210 210 210 HIS HIS A . n A 1 211 GLU 211 211 211 GLU GLU A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 TYR 213 213 213 TYR TYR A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 GLU 215 215 ? ? ? A . n A 1 216 LYS 216 216 ? ? ? A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 SER 219 219 219 SER SER A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 THR 222 222 222 THR THR A . n A 1 223 GLU 223 223 223 GLU GLU A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 TYR 228 228 228 TYR TYR A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 GLU 230 230 230 GLU GLU A . n A 1 231 ALA 231 231 231 ALA ALA A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 GLU 233 233 233 GLU GLU A . n A 1 234 LYS 234 234 234 LYS LYS A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 LYS 236 236 236 LYS LYS A . n A 1 237 ARG 237 237 237 ARG ARG A . n A 1 238 THR 238 238 238 THR THR A . n A 1 239 LYS 239 239 239 LYS LYS A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 GLU 243 243 243 GLU GLU A . n A 1 244 VAL 244 244 244 VAL VAL A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 HIS 246 246 246 HIS HIS A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 ILE 248 248 248 ILE ILE A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 GLU 250 250 250 GLU GLU A . n A 1 251 HIS 251 251 251 HIS HIS A . n A 1 252 ARG 252 252 252 ARG ARG A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 ARG 255 255 255 ARG ARG A . n A 1 256 GLU 256 256 256 GLU GLU A . n A 1 257 HIS 257 257 257 HIS HIS A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 LEU 259 259 259 LEU LEU A . n A 1 260 THR 260 260 260 THR THR A . n A 1 261 ASN 261 261 261 ASN ASN A . n A 1 262 HIS 262 262 262 HIS HIS A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 LYS 264 264 264 LYS LYS A . n A 1 265 SER 265 265 265 SER SER A . n A 1 266 LYS 266 266 266 LYS LYS A . n A 1 267 GLU 267 267 267 GLU GLU A . n A 1 268 VAL 268 268 268 VAL VAL A . n A 1 269 TRP 269 269 269 TRP TRP A . n A 1 270 LYS 270 270 270 LYS LYS A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 LEU 273 273 273 LEU LEU A . n A 1 274 GLN 274 274 274 GLN GLN A . n A 1 275 GLU 275 275 275 GLU GLU A . n A 1 276 MET 276 276 276 MET MET A . n A 1 277 PRO 277 277 277 PRO PRO A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 THR 279 279 279 THR THR A . n A 1 280 ALA 280 280 280 ALA ALA A . n A 1 281 LEU 281 281 281 LEU LEU A . n A 1 282 LEU 282 282 282 LEU LEU A . n A 1 283 ARG 283 283 283 ARG ARG A . n A 1 284 ASN 284 284 284 ASN ASN A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 GLY 286 286 286 GLY GLY A . n A 1 287 LYS 287 287 287 LYS LYS A . n A 1 288 MET 288 288 288 MET MET A . n A 1 289 THR 289 289 289 THR THR A . n A 1 290 ALA 290 290 290 ALA ALA A . n A 1 291 ASN 291 291 291 ASN ASN A . n A 1 292 SER 292 292 292 SER SER A . n A 1 293 VAL 293 293 293 VAL VAL A . n A 1 294 LEU 294 294 294 LEU LEU A . n A 1 295 GLU 295 295 295 GLU GLU A . n A 1 296 PRO 296 296 296 PRO PRO A . n A 1 297 GLY 297 297 297 GLY GLY A . n A 1 298 ASN 298 298 298 ASN ASN A . n A 1 299 SER 299 299 299 SER SER A . n A 1 300 GLU 300 300 300 GLU GLU A . n A 1 301 VAL 301 301 301 VAL VAL A . n A 1 302 SER 302 302 302 SER SER A . n A 1 303 LEU 303 303 303 LEU LEU A . n A 1 304 VAL 304 304 304 VAL VAL A . n A 1 305 CYS 305 305 305 CYS CYS A . n A 1 306 GLU 306 306 306 GLU GLU A . n A 1 307 LYS 307 307 307 LYS LYS A . n A 1 308 LEU 308 308 308 LEU LEU A . n A 1 309 CYS 309 309 309 CYS CYS A . n A 1 310 ASN 310 310 310 ASN ASN A . n A 1 311 GLU 311 311 311 GLU GLU A . n A 1 312 LYS 312 312 312 LYS LYS A . n A 1 313 LEU 313 313 313 LEU LEU A . n A 1 314 LEU 314 314 314 LEU LEU A . n A 1 315 LYS 315 315 315 LYS LYS A . n A 1 316 LYS 316 316 316 LYS LYS A . n A 1 317 ALA 317 317 317 ALA ALA A . n A 1 318 ARG 318 318 318 ARG ARG A . n A 1 319 ILE 319 319 319 ILE ILE A . n A 1 320 HIS 320 320 320 HIS HIS A . n A 1 321 PRO 321 321 321 PRO PRO A . n A 1 322 PHE 322 322 322 PHE PHE A . n A 1 323 HIS 323 323 323 HIS HIS A . n A 1 324 ILE 324 324 324 ILE ILE A . n A 1 325 LEU 325 325 325 LEU LEU A . n A 1 326 ILE 326 326 326 ILE ILE A . n A 1 327 ALA 327 327 327 ALA ALA A . n A 1 328 LEU 328 328 328 LEU LEU A . n A 1 329 GLU 329 329 329 GLU GLU A . n A 1 330 THR 330 330 330 THR THR A . n A 1 331 TYR 331 331 331 TYR TYR A . n A 1 332 LYS 332 332 332 LYS LYS A . n A 1 333 THR 333 333 333 THR THR A . n A 1 334 GLY 334 334 334 GLY GLY A . n A 1 335 HIS 335 335 335 HIS HIS A . n A 1 336 GLY 336 336 336 GLY GLY A . n A 1 337 LEU 337 337 337 LEU LEU A . n A 1 338 ARG 338 338 338 ARG ARG A . n A 1 339 GLY 339 339 339 GLY GLY A . n A 1 340 LYS 340 340 340 LYS LYS A . n A 1 341 LEU 341 341 341 LEU LEU A . n A 1 342 LYS 342 342 342 LYS LYS A . n A 1 343 TRP 343 343 343 TRP TRP A . n A 1 344 ARG 344 344 344 ARG ARG A . n A 1 345 PRO 345 345 345 PRO PRO A . n A 1 346 ASP 346 346 346 ASP ASP A . n A 1 347 GLU 347 347 347 GLU GLU A . n A 1 348 GLU 348 348 348 GLU GLU A . n A 1 349 ILE 349 349 349 ILE ILE A . n A 1 350 LEU 350 350 350 LEU LEU A . n A 1 351 LYS 351 351 351 LYS LYS A . n A 1 352 ALA 352 352 352 ALA ALA A . n A 1 353 LEU 353 353 353 LEU LEU A . n A 1 354 ASP 354 354 354 ASP ASP A . n A 1 355 ALA 355 355 355 ALA ALA A . n A 1 356 ALA 356 356 356 ALA ALA A . n A 1 357 PHE 357 357 357 PHE PHE A . n A 1 358 TYR 358 358 358 TYR TYR A . n A 1 359 LYS 359 359 359 LYS LYS A . n A 1 360 THR 360 360 360 THR THR A . n A 1 361 PHE 361 361 361 PHE PHE A . n A 1 362 LYS 362 362 362 LYS LYS A . n A 1 363 THR 363 363 363 THR THR A . n A 1 364 VAL 364 364 364 VAL VAL A . n A 1 365 GLU 365 365 365 GLU GLU A . n A 1 366 PRO 366 366 366 PRO PRO A . n A 1 367 THR 367 367 367 THR THR A . n A 1 368 GLY 368 368 368 GLY GLY A . n A 1 369 LYS 369 369 369 LYS LYS A . n A 1 370 ARG 370 370 370 ARG ARG A . n A 1 371 PHE 371 371 371 PHE PHE A . n A 1 372 LEU 372 372 372 LEU LEU A . n A 1 373 LEU 373 373 373 LEU LEU A . n A 1 374 ALA 374 374 374 ALA ALA A . n A 1 375 VAL 375 375 375 VAL VAL A . n A 1 376 ASP 376 376 376 ASP ASP A . n A 1 377 VAL 377 377 377 VAL VAL A . n A 1 378 SER 378 378 378 SER SER A . n A 1 379 ALA 379 379 379 ALA ALA A . n A 1 380 SER 380 380 380 SER SER A . n A 1 381 MET 381 381 381 MET MET A . n A 1 382 ASN 382 382 382 ASN ASN A . n A 1 383 GLN 383 383 383 GLN GLN A . n A 1 384 ARG 384 384 384 ARG ARG A . n A 1 385 VAL 385 385 385 VAL VAL A . n A 1 386 LEU 386 386 386 LEU LEU A . n A 1 387 GLY 387 387 387 GLY GLY A . n A 1 388 SER 388 388 388 SER SER A . n A 1 389 ILE 389 389 389 ILE ILE A . n A 1 390 LEU 390 390 390 LEU LEU A . n A 1 391 ASN 391 391 391 ASN ASN A . n A 1 392 ALA 392 392 392 ALA ALA A . n A 1 393 SER 393 393 393 SER SER A . n A 1 394 THR 394 394 394 THR THR A . n A 1 395 VAL 395 395 395 VAL VAL A . n A 1 396 ALA 396 396 396 ALA ALA A . n A 1 397 ALA 397 397 397 ALA ALA A . n A 1 398 ALA 398 398 398 ALA ALA A . n A 1 399 MET 399 399 399 MET MET A . n A 1 400 CYS 400 400 400 CYS CYS A . n A 1 401 MET 401 401 401 MET MET A . n A 1 402 VAL 402 402 402 VAL VAL A . n A 1 403 VAL 403 403 403 VAL VAL A . n A 1 404 THR 404 404 404 THR THR A . n A 1 405 ARG 405 405 405 ARG ARG A . n A 1 406 THR 406 406 406 THR THR A . n A 1 407 GLU 407 407 407 GLU GLU A . n A 1 408 LYS 408 408 408 LYS LYS A . n A 1 409 ASP 409 409 409 ASP ASP A . n A 1 410 SER 410 410 410 SER SER A . n A 1 411 TYR 411 411 411 TYR TYR A . n A 1 412 VAL 412 412 412 VAL VAL A . n A 1 413 VAL 413 413 413 VAL VAL A . n A 1 414 ALA 414 414 414 ALA ALA A . n A 1 415 PHE 415 415 415 PHE PHE A . n A 1 416 SER 416 416 416 SER SER A . n A 1 417 ASP 417 417 417 ASP ASP A . n A 1 418 GLU 418 418 418 GLU GLU A . n A 1 419 MET 419 419 419 MET MET A . n A 1 420 VAL 420 420 420 VAL VAL A . n A 1 421 PRO 421 421 421 PRO PRO A . n A 1 422 CYS 422 422 422 CYS CYS A . n A 1 423 PRO 423 423 423 PRO PRO A . n A 1 424 VAL 424 424 424 VAL VAL A . n A 1 425 THR 425 425 425 THR THR A . n A 1 426 THR 426 426 426 THR THR A . n A 1 427 ASP 427 427 427 ASP ASP A . n A 1 428 MET 428 428 428 MET MET A . n A 1 429 THR 429 429 429 THR THR A . n A 1 430 LEU 430 430 430 LEU LEU A . n A 1 431 GLN 431 431 431 GLN GLN A . n A 1 432 GLN 432 432 432 GLN GLN A . n A 1 433 VAL 433 433 433 VAL VAL A . n A 1 434 LEU 434 434 434 LEU LEU A . n A 1 435 MET 435 435 435 MET MET A . n A 1 436 ALA 436 436 436 ALA ALA A . n A 1 437 MET 437 437 437 MET MET A . n A 1 438 SER 438 438 438 SER SER A . n A 1 439 GLN 439 439 439 GLN GLN A . n A 1 440 ILE 440 440 440 ILE ILE A . n A 1 441 PRO 441 441 441 PRO PRO A . n A 1 442 ALA 442 442 442 ALA ALA A . n A 1 443 GLY 443 443 443 GLY GLY A . n A 1 444 GLY 444 444 444 GLY GLY A . n A 1 445 THR 445 445 445 THR THR A . n A 1 446 ASP 446 446 446 ASP ASP A . n A 1 447 CYS 447 447 447 CYS CYS A . n A 1 448 SER 448 448 448 SER SER A . n A 1 449 LEU 449 449 449 LEU LEU A . n A 1 450 PRO 450 450 450 PRO PRO A . n A 1 451 MET 451 451 451 MET MET A . n A 1 452 ILE 452 452 452 ILE ILE A . n A 1 453 TRP 453 453 453 TRP TRP A . n A 1 454 ALA 454 454 454 ALA ALA A . n A 1 455 GLN 455 455 455 GLN GLN A . n A 1 456 LYS 456 456 456 LYS LYS A . n A 1 457 THR 457 457 457 THR THR A . n A 1 458 ASN 458 458 458 ASN ASN A . n A 1 459 THR 459 459 459 THR THR A . n A 1 460 PRO 460 460 460 PRO PRO A . n A 1 461 ALA 461 461 461 ALA ALA A . n A 1 462 ASP 462 462 462 ASP ASP A . n A 1 463 VAL 463 463 463 VAL VAL A . n A 1 464 PHE 464 464 464 PHE PHE A . n A 1 465 ILE 465 465 465 ILE ILE A . n A 1 466 VAL 466 466 466 VAL VAL A . n A 1 467 PHE 467 467 467 PHE PHE A . n A 1 468 THR 468 468 468 THR THR A . n A 1 469 ASP 469 469 469 ASP ASP A . n A 1 470 ASN 470 470 470 ASN ASN A . n A 1 471 GLU 471 471 471 GLU GLU A . n A 1 472 THR 472 472 472 THR THR A . n A 1 473 PHE 473 473 473 PHE PHE A . n A 1 474 ALA 474 474 474 ALA ALA A . n A 1 475 GLY 475 475 475 GLY GLY A . n A 1 476 GLY 476 476 476 GLY GLY A . n A 1 477 VAL 477 477 477 VAL VAL A . n A 1 478 HIS 478 478 478 HIS HIS A . n A 1 479 PRO 479 479 479 PRO PRO A . n A 1 480 ALA 480 480 480 ALA ALA A . n A 1 481 ILE 481 481 481 ILE ILE A . n A 1 482 ALA 482 482 482 ALA ALA A . n A 1 483 LEU 483 483 483 LEU LEU A . n A 1 484 ARG 484 484 484 ARG ARG A . n A 1 485 GLU 485 485 485 GLU GLU A . n A 1 486 TYR 486 486 486 TYR TYR A . n A 1 487 ARG 487 487 487 ARG ARG A . n A 1 488 LYS 488 488 488 LYS LYS A . n A 1 489 LYS 489 489 489 LYS LYS A . n A 1 490 MET 490 490 490 MET MET A . n A 1 491 ASP 491 491 491 ASP ASP A . n A 1 492 ILE 492 492 492 ILE ILE A . n A 1 493 PRO 493 493 493 PRO PRO A . n A 1 494 ALA 494 494 494 ALA ALA A . n A 1 495 LYS 495 495 495 LYS LYS A . n A 1 496 LEU 496 496 496 LEU LEU A . n A 1 497 ILE 497 497 497 ILE ILE A . n A 1 498 VAL 498 498 498 VAL VAL A . n A 1 499 CYS 499 499 499 CYS CYS A . n A 1 500 GLY 500 500 500 GLY GLY A . n A 1 501 MET 501 501 501 MET MET A . n A 1 502 THR 502 502 502 THR THR A . n A 1 503 SER 503 503 503 SER SER A . n A 1 504 ASN 504 504 504 ASN ASN A . n A 1 505 GLY 505 505 505 GLY GLY A . n A 1 506 PHE 506 506 506 PHE PHE A . n A 1 507 THR 507 507 507 THR THR A . n A 1 508 ILE 508 508 508 ILE ILE A . n A 1 509 ALA 509 509 509 ALA ALA A . n A 1 510 ASP 510 510 510 ASP ASP A . n A 1 511 PRO 511 511 511 PRO PRO A . n A 1 512 ASP 512 512 512 ASP ASP A . n A 1 513 ASP 513 513 513 ASP ASP A . n A 1 514 ARG 514 514 514 ARG ARG A . n A 1 515 GLY 515 515 515 GLY GLY A . n A 1 516 MET 516 516 516 MET MET A . n A 1 517 LEU 517 517 517 LEU LEU A . n A 1 518 ASP 518 518 518 ASP ASP A . n A 1 519 MET 519 519 519 MET MET A . n A 1 520 CYS 520 520 520 CYS CYS A . n A 1 521 GLY 521 521 521 GLY GLY A . n A 1 522 PHE 522 522 522 PHE PHE A . n A 1 523 ASP 523 523 523 ASP ASP A . n A 1 524 THR 524 524 524 THR THR A . n A 1 525 GLY 525 525 525 GLY GLY A . n A 1 526 ALA 526 526 526 ALA ALA A . n A 1 527 LEU 527 527 527 LEU LEU A . n A 1 528 ASP 528 528 528 ASP ASP A . n A 1 529 VAL 529 529 529 VAL VAL A . n A 1 530 ILE 530 530 530 ILE ILE A . n A 1 531 ARG 531 531 531 ARG ARG A . n A 1 532 ASN 532 532 532 ASN ASN A . n A 1 533 PHE 533 533 533 PHE PHE A . n A 1 534 THR 534 534 534 THR THR A . n A 1 535 LEU 535 535 535 LEU LEU A . n A 1 536 ASP 536 536 536 ASP ASP A . n A 1 537 MET 537 537 ? ? ? A . n A 1 538 ILE 538 538 ? ? ? A . n B 2 1 G 1 1 1 G G B . n B 2 2 C 2 2 2 C C B . n B 2 3 C 3 3 3 C C B . n B 2 4 U 4 4 4 U U B . n B 2 5 A 5 5 5 A A B . n B 2 6 C 6 6 6 C C B . n B 2 7 C 7 7 7 C C B . n B 2 8 C 8 8 8 C C B . n B 2 9 G 9 9 9 G G B . n B 2 10 C 10 10 10 C C B . n B 2 11 A 11 11 ? ? ? B . n B 2 12 C 12 12 ? ? ? B . n B 2 13 A 13 13 ? ? ? B . n B 2 14 C 14 14 ? ? ? B . n B 2 15 U 15 15 ? ? ? B . n B 2 16 A 16 16 16 A A B . n B 2 17 C 17 17 17 C C B . n B 2 18 C 18 18 18 C C B . n B 2 19 C 19 19 19 C C B . n B 2 20 U 20 20 20 U U B . n B 2 21 G 21 21 21 G G B . n B 2 22 U 22 22 ? ? ? B . n B 2 23 U 23 23 ? ? ? B . n B 2 24 C 24 24 ? ? ? B . n B 2 25 G 25 25 ? ? ? B . n B 2 26 C 26 26 26 C C B . n B 2 27 A 27 27 27 A A B . n B 2 28 G 28 28 28 G G B . n B 2 29 G 29 29 29 G G B . n B 2 30 G 30 30 30 G G B . n B 2 31 U 31 31 31 U U B . n B 2 32 C 32 32 32 C C B . n B 2 33 G 33 33 33 G G B . n B 2 34 G 34 34 34 G G B . n B 2 35 C 35 35 35 C C B . n B 2 36 G 36 36 36 G G B . n B 2 37 G 37 37 37 G G B . n B 2 38 U 38 38 ? ? ? B . n B 2 39 G 39 39 ? ? ? B . n B 2 40 G 40 40 40 G G B . n B 2 41 U 41 41 ? ? ? B . n B 2 42 U 42 42 ? ? ? B . n B 2 43 U 43 43 ? ? ? B . n B 2 44 U 44 44 ? ? ? B . n B 2 45 U 45 45 ? ? ? B . n B 2 46 C 46 46 ? ? ? B . n B 2 47 A 47 47 ? ? ? B . n B 2 48 U 48 48 48 U U B . n B 2 49 A 49 49 49 A A B . n B 2 50 G 50 50 50 G G B . n B 2 51 G 51 51 51 G G B . n B 2 52 C 52 52 52 C C B . n B 2 53 U 53 53 53 U U B . n B 2 54 U 54 54 54 U U B . n B 2 55 U 55 55 55 U U B . n B 2 56 U 56 56 56 U U B . n B 2 57 C 57 57 57 C C B . n B 2 58 A 58 58 58 A A B . n B 2 59 A 59 59 59 A A B . n B 2 60 A 60 60 60 A A B . n B 2 61 G 61 61 61 G G B . n B 2 62 U 62 62 62 U U B . n B 2 63 U 63 63 ? ? ? B . n B 2 64 U 64 64 ? ? ? B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id MG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id MG _pdbx_nonpoly_scheme.auth_mon_id MG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9NEP _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9NEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9NEP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9NEP _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.70 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 5290 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.477 ? 7339 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 20.284 ? 1217 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.036 ? 875 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 766 ? f_plane_restr ? ? # _struct.entry_id 9NEP _struct.title 'Cryo-EM structure of Ro60/minimal misfolded pre-5S rRNA complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9NEP _struct_keywords.text 'Ro60 autoantigen, RNA chaperone, RNA folding, RNA BINDING PROTEIN, RNA BINDING PROTEIN-RNA complex' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9NEP 9NEP ? 1 ? 1 2 PDB 9NEP 9NEP ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9NEP A 1 ? 538 ? 9NEP 1 ? 538 ? 1 538 2 2 9NEP B 1 ? 64 ? 9NEP 1 ? 64 ? 1 64 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 28 ? GLY A 40 ? THR A 28 GLY A 40 1 ? 13 HELX_P HELX_P2 AA2 LYS A 49 ? GLY A 68 ? LYS A 49 GLY A 68 1 ? 20 HELX_P HELX_P3 AA3 ARG A 69 ? GLU A 83 ? ARG A 69 GLU A 83 1 ? 15 HELX_P HELX_P4 AA4 GLN A 89 ? GLN A 101 ? GLN A 89 GLN A 101 1 ? 13 HELX_P HELX_P5 AA5 ASP A 104 ? CYS A 119 ? ASP A 104 CYS A 119 1 ? 16 HELX_P HELX_P6 AA6 ILE A 121 ? LYS A 140 ? ILE A 121 LYS A 140 1 ? 20 HELX_P HELX_P7 AA7 GLY A 145 ? GLU A 158 ? GLY A 145 GLU A 158 1 ? 14 HELX_P HELX_P8 AA8 GLY A 160 ? TYR A 171 ? GLY A 160 TYR A 171 1 ? 12 HELX_P HELX_P9 AA9 HIS A 179 ? HIS A 187 ? HIS A 179 HIS A 187 1 ? 9 HELX_P HELX_P10 AB1 SER A 192 ? LYS A 204 ? SER A 192 LYS A 204 1 ? 13 HELX_P HELX_P11 AB2 GLY A 205 ? TYR A 213 ? GLY A 205 TYR A 213 1 ? 9 HELX_P HELX_P12 AB3 SER A 219 ? VAL A 235 ? SER A 219 VAL A 235 1 ? 17 HELX_P HELX_P13 AB4 GLU A 241 ? ARG A 252 ? GLU A 241 ARG A 252 1 ? 12 HELX_P HELX_P14 AB5 VAL A 254 ? LEU A 258 ? VAL A 254 LEU A 258 5 ? 5 HELX_P HELX_P15 AB6 ASN A 261 ? LYS A 264 ? ASN A 261 LYS A 264 5 ? 4 HELX_P HELX_P16 AB7 SER A 265 ? GLN A 274 ? SER A 265 GLN A 274 1 ? 10 HELX_P HELX_P17 AB8 PRO A 277 ? ASN A 284 ? PRO A 277 ASN A 284 1 ? 8 HELX_P HELX_P18 AB9 ASN A 284 ? ASN A 291 ? ASN A 284 ASN A 291 1 ? 8 HELX_P HELX_P19 AC1 VAL A 301 ? CYS A 309 ? VAL A 301 CYS A 309 1 ? 9 HELX_P HELX_P20 AC2 ASN A 310 ? ALA A 317 ? ASN A 310 ALA A 317 1 ? 8 HELX_P HELX_P21 AC3 HIS A 320 ? LYS A 332 ? HIS A 320 LYS A 332 1 ? 13 HELX_P HELX_P22 AC4 ASP A 346 ? THR A 360 ? ASP A 346 THR A 360 1 ? 15 HELX_P HELX_P23 AC5 SER A 378 ? GLN A 383 ? SER A 378 GLN A 383 5 ? 6 HELX_P HELX_P24 AC6 ASN A 391 ? GLU A 407 ? ASN A 391 GLU A 407 1 ? 17 HELX_P HELX_P25 AC7 THR A 429 ? MET A 437 ? THR A 429 MET A 437 1 ? 9 HELX_P HELX_P26 AC8 SER A 448 ? ASN A 458 ? SER A 448 ASN A 458 1 ? 11 HELX_P HELX_P27 AC9 HIS A 478 ? LYS A 488 ? HIS A 478 LYS A 488 1 ? 11 HELX_P HELX_P28 AD1 GLY A 525 ? LEU A 535 ? GLY A 525 LEU A 535 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A TYR 47 OH ? ? ? 1_555 C MG . MG ? ? A TYR 47 A MG 601 1_555 ? ? ? ? ? ? ? 2.744 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 52 N3 ? ? B G 1 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 52 O2 ? ? B G 1 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 52 N4 ? ? B G 1 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 2 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 2 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 2 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 50 N1 ? ? B C 3 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 50 O6 ? ? B C 3 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 50 N2 ? ? B C 3 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B U 4 N3 ? ? ? 1_555 B A 49 N1 ? ? B U 4 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B U 4 O4 ? ? ? 1_555 B A 49 N6 ? ? B U 4 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 48 N3 ? ? B A 5 B U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 48 O4 ? ? B A 5 B U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 7 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 7 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 7 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 36 N1 ? ? B C 8 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 36 O6 ? ? B C 8 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 36 N2 ? ? B C 8 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 34 N1 ? ? B C 10 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 34 O6 ? ? B C 10 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 34 N2 ? ? B C 10 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B A 16 N1 ? ? ? 1_555 B U 31 N3 ? ? B A 16 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B A 16 N6 ? ? ? 1_555 B U 31 O4 ? ? B A 16 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 17 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 17 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 17 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 17 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 17 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 17 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 18 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 18 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 18 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 18 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B C 18 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 18 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 19 B G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog35 hydrog ? ? B U 20 O4 ? ? ? 1_555 B C 26 N4 ? ? B U 20 B C 26 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog36 hydrog ? ? B U 20 O4 ? ? ? 1_555 B A 27 N6 ? ? B U 20 B A 27 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog37 hydrog ? ? B G 21 N1 ? ? ? 1_555 B C 26 N3 ? ? B G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 21 N2 ? ? ? 1_555 B C 26 O2 ? ? B G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 26 N4 ? ? B G 21 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? AA3 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA3 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 16 ? ALA A 17 ? ILE A 16 ALA A 17 AA1 2 TYR A 23 ? GLN A 26 ? TYR A 23 GLN A 26 AA1 3 PHE A 506 ? THR A 507 ? PHE A 506 THR A 507 AA2 1 GLN A 173 ? ARG A 174 ? GLN A 173 ARG A 174 AA2 2 TRP A 177 ? SER A 178 ? TRP A 177 SER A 178 AA3 1 MET A 419 ? VAL A 420 ? MET A 419 VAL A 420 AA3 2 SER A 410 ? PHE A 415 ? SER A 410 PHE A 415 AA3 3 PHE A 371 ? ASP A 376 ? PHE A 371 ASP A 376 AA3 4 VAL A 463 ? THR A 468 ? VAL A 463 THR A 468 AA3 5 LYS A 495 ? GLY A 500 ? LYS A 495 GLY A 500 AA3 6 MET A 516 ? CYS A 520 ? MET A 516 CYS A 520 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 16 ? N ILE A 16 O VAL A 24 ? O VAL A 24 AA1 2 3 N TRP A 25 ? N TRP A 25 O THR A 507 ? O THR A 507 AA2 1 2 N ARG A 174 ? N ARG A 174 O TRP A 177 ? O TRP A 177 AA3 1 2 O VAL A 420 ? O VAL A 420 N ALA A 414 ? N ALA A 414 AA3 2 3 O VAL A 413 ? O VAL A 413 N LEU A 373 ? N LEU A 373 AA3 3 4 N ALA A 374 ? N ALA A 374 O PHE A 467 ? O PHE A 467 AA3 4 5 N PHE A 464 ? N PHE A 464 O ILE A 497 ? O ILE A 497 AA3 5 6 N VAL A 498 ? N VAL A 498 O MET A 519 ? O MET A 519 # _pdbx_entry_details.entry_id 9NEP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 502 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASN _pdbx_validate_close_contact.auth_seq_id_2 504 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 6 ? ? 71.83 140.93 2 1 ASN A 175 ? ? 47.50 27.48 3 1 TYR A 213 ? ? -99.08 35.64 4 1 GLU A 300 ? ? 72.47 -8.98 5 1 ILE A 349 ? ? 66.04 -55.62 6 1 ASP A 409 ? ? -90.83 59.43 7 1 MET A 437 ? ? -92.80 51.85 8 1 LYS A 489 ? ? 72.07 -8.43 9 1 LEU A 535 ? ? -92.79 50.80 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9NEP _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9NEP _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 190106 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Ro60/minimal misfolded pre-5S rRNA complex' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9NEP _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9NEP _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9NEP _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A GLU 3 ? A GLU 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A GLU 215 ? A GLU 215 6 1 Y 1 A LYS 216 ? A LYS 216 7 1 Y 1 A MET 537 ? A MET 537 8 1 Y 1 A ILE 538 ? A ILE 538 9 1 Y 1 B A 11 ? B A 11 10 1 Y 1 B C 12 ? B C 12 11 1 Y 1 B A 13 ? B A 13 12 1 Y 1 B C 14 ? B C 14 13 1 Y 1 B U 15 ? B U 15 14 1 Y 1 B U 22 ? B U 22 15 1 Y 1 B U 23 ? B U 23 16 1 Y 1 B C 24 ? B C 24 17 1 Y 1 B G 25 ? B G 25 18 1 Y 1 B U 38 ? B U 38 19 1 Y 1 B G 39 ? B G 39 20 1 Y 1 B U 41 ? B U 41 21 1 Y 1 B U 42 ? B U 42 22 1 Y 1 B U 43 ? B U 43 23 1 Y 1 B U 44 ? B U 44 24 1 Y 1 B U 45 ? B U 45 25 1 Y 1 B C 46 ? B C 46 26 1 Y 1 B A 47 ? B A 47 27 1 Y 1 B U 63 ? B U 63 28 1 Y 1 B U 64 ? B U 64 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 MG MG MG N N 357 PHE N N N N 358 PHE CA C N S 359 PHE C C N N 360 PHE O O N N 361 PHE CB C N N 362 PHE CG C Y N 363 PHE CD1 C Y N 364 PHE CD2 C Y N 365 PHE CE1 C Y N 366 PHE CE2 C Y N 367 PHE CZ C Y N 368 PHE OXT O N N 369 PHE H H N N 370 PHE H2 H N N 371 PHE HA H N N 372 PHE HB2 H N N 373 PHE HB3 H N N 374 PHE HD1 H N N 375 PHE HD2 H N N 376 PHE HE1 H N N 377 PHE HE2 H N N 378 PHE HZ H N N 379 PHE HXT H N N 380 PRO N N N N 381 PRO CA C N S 382 PRO C C N N 383 PRO O O N N 384 PRO CB C N N 385 PRO CG C N N 386 PRO CD C N N 387 PRO OXT O N N 388 PRO H H N N 389 PRO HA H N N 390 PRO HB2 H N N 391 PRO HB3 H N N 392 PRO HG2 H N N 393 PRO HG3 H N N 394 PRO HD2 H N N 395 PRO HD3 H N N 396 PRO HXT H N N 397 SER N N N N 398 SER CA C N S 399 SER C C N N 400 SER O O N N 401 SER CB C N N 402 SER OG O N N 403 SER OXT O N N 404 SER H H N N 405 SER H2 H N N 406 SER HA H N N 407 SER HB2 H N N 408 SER HB3 H N N 409 SER HG H N N 410 SER HXT H N N 411 THR N N N N 412 THR CA C N S 413 THR C C N N 414 THR O O N N 415 THR CB C N R 416 THR OG1 O N N 417 THR CG2 C N N 418 THR OXT O N N 419 THR H H N N 420 THR H2 H N N 421 THR HA H N N 422 THR HB H N N 423 THR HG1 H N N 424 THR HG21 H N N 425 THR HG22 H N N 426 THR HG23 H N N 427 THR HXT H N N 428 TRP N N N N 429 TRP CA C N S 430 TRP C C N N 431 TRP O O N N 432 TRP CB C N N 433 TRP CG C Y N 434 TRP CD1 C Y N 435 TRP CD2 C Y N 436 TRP NE1 N Y N 437 TRP CE2 C Y N 438 TRP CE3 C Y N 439 TRP CZ2 C Y N 440 TRP CZ3 C Y N 441 TRP CH2 C Y N 442 TRP OXT O N N 443 TRP H H N N 444 TRP H2 H N N 445 TRP HA H N N 446 TRP HB2 H N N 447 TRP HB3 H N N 448 TRP HD1 H N N 449 TRP HE1 H N N 450 TRP HE3 H N N 451 TRP HZ2 H N N 452 TRP HZ3 H N N 453 TRP HH2 H N N 454 TRP HXT H N N 455 TYR N N N N 456 TYR CA C N S 457 TYR C C N N 458 TYR O O N N 459 TYR CB C N N 460 TYR CG C Y N 461 TYR CD1 C Y N 462 TYR CD2 C Y N 463 TYR CE1 C Y N 464 TYR CE2 C Y N 465 TYR CZ C Y N 466 TYR OH O N N 467 TYR OXT O N N 468 TYR H H N N 469 TYR H2 H N N 470 TYR HA H N N 471 TYR HB2 H N N 472 TYR HB3 H N N 473 TYR HD1 H N N 474 TYR HD2 H N N 475 TYR HE1 H N N 476 TYR HE2 H N N 477 TYR HH H N N 478 TYR HXT H N N 479 U OP3 O N N 480 U P P N N 481 U OP1 O N N 482 U OP2 O N N 483 U "O5'" O N N 484 U "C5'" C N N 485 U "C4'" C N R 486 U "O4'" O N N 487 U "C3'" C N S 488 U "O3'" O N N 489 U "C2'" C N R 490 U "O2'" O N N 491 U "C1'" C N R 492 U N1 N N N 493 U C2 C N N 494 U O2 O N N 495 U N3 N N N 496 U C4 C N N 497 U O4 O N N 498 U C5 C N N 499 U C6 C N N 500 U HOP3 H N N 501 U HOP2 H N N 502 U "H5'" H N N 503 U "H5''" H N N 504 U "H4'" H N N 505 U "H3'" H N N 506 U "HO3'" H N N 507 U "H2'" H N N 508 U "HO2'" H N N 509 U "H1'" H N N 510 U H3 H N N 511 U H5 H N N 512 U H6 H N N 513 VAL N N N N 514 VAL CA C N S 515 VAL C C N N 516 VAL O O N N 517 VAL CB C N N 518 VAL CG1 C N N 519 VAL CG2 C N N 520 VAL OXT O N N 521 VAL H H N N 522 VAL H2 H N N 523 VAL HA H N N 524 VAL HB H N N 525 VAL HG11 H N N 526 VAL HG12 H N N 527 VAL HG13 H N N 528 VAL HG21 H N N 529 VAL HG22 H N N 530 VAL HG23 H N N 531 VAL HXT H N N 532 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 U OP3 P sing N N 471 U OP3 HOP3 sing N N 472 U P OP1 doub N N 473 U P OP2 sing N N 474 U P "O5'" sing N N 475 U OP2 HOP2 sing N N 476 U "O5'" "C5'" sing N N 477 U "C5'" "C4'" sing N N 478 U "C5'" "H5'" sing N N 479 U "C5'" "H5''" sing N N 480 U "C4'" "O4'" sing N N 481 U "C4'" "C3'" sing N N 482 U "C4'" "H4'" sing N N 483 U "O4'" "C1'" sing N N 484 U "C3'" "O3'" sing N N 485 U "C3'" "C2'" sing N N 486 U "C3'" "H3'" sing N N 487 U "O3'" "HO3'" sing N N 488 U "C2'" "O2'" sing N N 489 U "C2'" "C1'" sing N N 490 U "C2'" "H2'" sing N N 491 U "O2'" "HO2'" sing N N 492 U "C1'" N1 sing N N 493 U "C1'" "H1'" sing N N 494 U N1 C2 sing N N 495 U N1 C6 sing N N 496 U C2 O2 doub N N 497 U C2 N3 sing N N 498 U N3 C4 sing N N 499 U N3 H3 sing N N 500 U C4 O4 doub N N 501 U C4 C5 sing N N 502 U C5 C6 doub N N 503 U C5 H5 sing N N 504 U C6 H6 sing N N 505 VAL N CA sing N N 506 VAL N H sing N N 507 VAL N H2 sing N N 508 VAL CA C sing N N 509 VAL CA CB sing N N 510 VAL CA HA sing N N 511 VAL C O doub N N 512 VAL C OXT sing N N 513 VAL CB CG1 sing N N 514 VAL CB CG2 sing N N 515 VAL CB HB sing N N 516 VAL CG1 HG11 sing N N 517 VAL CG1 HG12 sing N N 518 VAL CG1 HG13 sing N N 519 VAL CG2 HG21 sing N N 520 VAL CG2 HG22 sing N N 521 VAL CG2 HG23 sing N N 522 VAL OXT HXT sing N N 523 # _em_admin.current_status REL _em_admin.deposition_date 2025-02-20 _em_admin.deposition_site RCSB _em_admin.entry_id 9NEP _em_admin.last_update 2026-02-04 _em_admin.map_release_date 2026-02-04 _em_admin.title 'Cryo-EM structure of Ro60/minimal misfolded pre-5S rRNA complex' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 49.8 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9NEP 'double helix' 9NEP 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 52 1_555 -1.055 -0.019 0.191 6.823 -7.418 5.178 1 B_G1:C52_B B 1 ? B 52 ? 19 1 1 B C 2 1_555 B G 51 1_555 -0.082 0.141 0.047 1.440 -11.465 5.826 2 B_C2:G51_B B 2 ? B 51 ? 19 1 1 B C 3 1_555 B G 50 1_555 0.287 -0.007 -0.095 2.739 -9.168 3.360 3 B_C3:G50_B B 3 ? B 50 ? 19 1 1 B U 4 1_555 B A 49 1_555 -0.238 0.106 0.221 2.620 -11.448 5.363 4 B_U4:A49_B B 4 ? B 49 ? 20 1 1 B A 5 1_555 B U 48 1_555 0.551 -0.369 0.025 -1.944 -8.761 -6.766 5 B_A5:U48_B B 5 ? B 48 ? 20 1 1 B C 6 1_555 B G 40 1_555 0.299 -0.498 -0.243 4.843 -11.040 -4.059 6 B_C6:G40_B B 6 ? B 40 ? 19 1 1 B C 7 1_555 B G 37 1_555 -0.839 -0.096 0.154 1.237 -18.722 0.491 7 B_C7:G37_B B 7 ? B 37 ? 19 1 1 B C 8 1_555 B G 36 1_555 0.875 -0.488 -0.551 14.654 -22.776 0.511 8 B_C8:G36_B B 8 ? B 36 ? 19 1 1 B C 10 1_555 B G 34 1_555 0.147 -0.093 -0.830 15.007 -28.433 19.520 9 B_C10:G34_B B 10 ? B 34 ? 19 1 1 B A 16 1_555 B U 31 1_555 0.290 -0.031 0.395 6.960 -25.290 -0.578 10 B_A16:U31_B B 16 ? B 31 ? 20 1 1 B C 17 1_555 B G 30 1_555 0.318 -0.014 -0.485 9.737 -23.234 -11.997 11 B_C17:G30_B B 17 ? B 30 ? 19 1 1 B C 18 1_555 B G 29 1_555 -0.325 0.205 0.026 5.146 -32.397 -8.126 12 B_C18:G29_B B 18 ? B 29 ? 19 1 1 B C 19 1_555 B G 28 1_555 -1.155 0.270 0.099 -17.082 -46.362 -40.650 13 B_C19:G28_B B 19 ? B 28 ? ? 1 1 B U 20 1_555 B A 27 1_555 -0.692 1.054 1.147 -16.471 -28.620 -42.466 14 B_U20:A27_B B 20 ? B 27 ? ? ? 1 B G 21 1_555 B C 26 1_555 0.834 -0.940 1.976 24.948 -32.868 -16.200 15 B_G21:C26_B B 21 ? B 26 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 52 1_555 B C 2 1_555 B G 51 1_555 -0.082 -1.722 3.527 1.176 -0.275 38.158 -2.595 0.286 3.535 -0.421 -1.798 38.177 1 BB_G1C2:G51C52_BB B 1 ? B 52 ? B 2 ? B 51 ? 1 B C 2 1_555 B G 51 1_555 B C 3 1_555 B G 50 1_555 -0.549 -1.541 3.305 -0.117 3.938 29.417 -3.821 1.048 3.079 7.712 0.230 29.674 2 BB_C2C3:G50G51_BB B 2 ? B 51 ? B 3 ? B 50 ? 1 B C 3 1_555 B G 50 1_555 B U 4 1_555 B A 49 1_555 0.247 -1.372 3.127 -0.026 12.528 29.379 -4.493 -0.453 2.360 23.406 0.049 31.885 3 BB_C3U4:A49G50_BB B 3 ? B 50 ? B 4 ? B 49 ? 1 B U 4 1_555 B A 49 1_555 B A 5 1_555 B U 48 1_555 -0.612 -1.506 3.356 -0.956 8.988 34.249 -3.765 0.870 2.897 14.943 1.589 35.387 4 BB_U4A5:U48A49_BB B 4 ? B 49 ? B 5 ? B 48 ? 1 B A 5 1_555 B U 48 1_555 B C 6 1_555 B G 40 1_555 -0.025 -1.678 3.207 -0.294 1.067 31.346 -3.300 -0.008 3.150 1.975 0.544 31.365 5 BB_A5C6:G40U48_BB B 5 ? B 48 ? B 6 ? B 40 ? 1 B C 6 1_555 B G 40 1_555 B C 7 1_555 B G 37 1_555 0.804 -1.661 3.502 -4.851 10.524 34.843 -4.061 -1.933 2.769 17.003 7.838 36.663 6 BB_C6C7:G37G40_BB B 6 ? B 40 ? B 7 ? B 37 ? 1 B C 7 1_555 B G 37 1_555 B C 8 1_555 B G 36 1_555 0.204 -1.459 3.312 4.025 2.504 35.294 -2.750 0.252 3.207 4.107 -6.602 35.601 7 BB_C7C8:G36G37_BB B 7 ? B 37 ? B 8 ? B 36 ? 1 B C 8 1_555 B G 36 1_555 B C 10 1_555 B G 34 1_555 -0.448 -1.702 6.564 8.738 31.793 52.698 -4.520 1.223 4.820 32.490 -8.930 61.531 8 BB_C8C10:G34G36_BB B 8 ? B 36 ? B 10 ? B 34 ? 1 B A 16 1_555 B U 31 1_555 B C 17 1_555 B G 30 1_555 -0.478 -1.206 3.107 4.955 3.586 36.911 -2.317 1.347 2.896 5.616 -7.760 37.397 9 BB_A16C17:G30U31_BB B 16 ? B 31 ? B 17 ? B 30 ? 1 B C 17 1_555 B G 30 1_555 B C 18 1_555 B G 29 1_555 -0.090 -2.316 3.642 -1.689 4.983 17.676 -10.014 -0.664 2.881 15.769 5.346 18.436 10 BB_C17C18:G29G30_BB B 17 ? B 30 ? B 18 ? B 29 ? 1 B C 18 1_555 B G 29 1_555 B C 19 1_555 B G 28 1_555 -0.544 -2.254 3.680 -1.042 15.876 30.229 -6.290 0.768 2.266 28.127 1.846 34.074 11 BB_C18C19:G28G29_BB B 18 ? B 29 ? B 19 ? B 28 ? 1 B C 19 1_555 B G 28 1_555 B U 20 1_555 B A 27 1_555 -0.011 -2.224 3.143 -2.887 0.137 33.349 -3.883 -0.438 3.124 0.239 5.019 33.470 12 BB_C19U20:A27G28_BB B 19 ? B 28 ? B 20 ? B 27 ? 1 B U 20 1_555 B A 27 1_555 B G 21 1_555 B C 26 1_555 2.171 0.007 2.429 2.602 -3.605 24.722 0.842 -4.398 2.612 -8.333 -6.015 25.113 13 BB_U20G21:C26A27_BB B 20 ? B 27 ? B 21 ? B 26 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 'CCR Core Funding for Lea Group' 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 'CCR Core Funding for Wolin Group' 2 # _atom_sites.entry_id 9NEP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_ #