data_9NKD # _entry.id 9NKD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9NKD pdb_00009nkd 10.2210/pdb9nkd/pdb WWPDB D_1000292815 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-09-24 ? 2 'Structure model' 1 1 2025-10-08 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9NKD _pdbx_database_status.recvd_initial_deposition_date 2025-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 janice.pata@health.ny.gove Janice Pata D 'principal investigator/group leader' 0000-0001-5999-5442 3 michael_trakselis@baylor.edu Michael Trakselis A. 'principal investigator/group leader' 0000-0001-7054-8475 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pata, J.D.' 1 0000-0001-5999-5442 'Liang, B.' 2 0009-0001-9653-6568 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Residues in the little finger domain of the Y-family Dpo4 DNA polymerase communicate to restrict synthesis past 8-oxoguanine lesions. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaf950 _citation.pdbx_database_id_PubMed 41002026 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Disha, S.S.' 1 0009-0008-1939-8211 primary 'Punchipatabendi, T.I.' 2 0000-0003-1769-4603 primary 'Kaszubowski, J.D.' 3 0000-0003-0153-9043 primary 'Liang, B.' 4 0009-0001-9653-6568 primary 'Pata, J.D.' 5 0000-0001-5999-5442 primary 'Trakselis, M.A.' 6 0000-0001-7054-8475 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 40171.762 1 2.7.7.7 R332A ? ? 2 polymer syn 'Primer DNA' 4016.623 1 ? ? ? ? 3 polymer syn 'Template DNA' 5179.348 1 ? ? ? ? 4 non-polymer syn ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; 491.182 1 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 6 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 7 water nat water 18.015 19 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRAIGVRFSKFIEAIGLDKFFDT ; ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRAIGVRFSKFIEAIGLDKFFDT ; A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DC)(DG)(DA)(DT)(DA)(DC)(DC)(DG)(DT)(DG)' GAGCGATACCGTG P ? 3 polydeoxyribonucleotide no yes '(DC)(DG)(DA)(DT)(DC)(DA)(DC)(8OG)(DG)(DT)(DA)(DT)(DC)(DG)(DC)(DT)(DC)' CGATCACGGTATCGCTC T ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; DTP 5 'CALCIUM ION' CA 6 'PHOSPHATE ION' PO4 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 VAL n 1 7 ASP n 1 8 PHE n 1 9 ASP n 1 10 TYR n 1 11 PHE n 1 12 TYR n 1 13 ALA n 1 14 GLN n 1 15 VAL n 1 16 GLU n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ASN n 1 21 PRO n 1 22 SER n 1 23 LEU n 1 24 LYS n 1 25 GLY n 1 26 LYS n 1 27 PRO n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 CYS n 1 32 VAL n 1 33 PHE n 1 34 SER n 1 35 GLY n 1 36 ARG n 1 37 PHE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 GLY n 1 42 ALA n 1 43 VAL n 1 44 ALA n 1 45 THR n 1 46 ALA n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 ALA n 1 51 ARG n 1 52 LYS n 1 53 PHE n 1 54 GLY n 1 55 VAL n 1 56 LYS n 1 57 ALA n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 ILE n 1 62 VAL n 1 63 GLU n 1 64 ALA n 1 65 LYS n 1 66 LYS n 1 67 ILE n 1 68 LEU n 1 69 PRO n 1 70 ASN n 1 71 ALA n 1 72 VAL n 1 73 TYR n 1 74 LEU n 1 75 PRO n 1 76 MET n 1 77 ARG n 1 78 LYS n 1 79 GLU n 1 80 VAL n 1 81 TYR n 1 82 GLN n 1 83 GLN n 1 84 VAL n 1 85 SER n 1 86 SER n 1 87 ARG n 1 88 ILE n 1 89 MET n 1 90 ASN n 1 91 LEU n 1 92 LEU n 1 93 ARG n 1 94 GLU n 1 95 TYR n 1 96 SER n 1 97 GLU n 1 98 LYS n 1 99 ILE n 1 100 GLU n 1 101 ILE n 1 102 ALA n 1 103 SER n 1 104 ILE n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 TYR n 1 109 LEU n 1 110 ASP n 1 111 ILE n 1 112 SER n 1 113 ASP n 1 114 LYS n 1 115 VAL n 1 116 ARG n 1 117 ASP n 1 118 TYR n 1 119 ARG n 1 120 GLU n 1 121 ALA n 1 122 TYR n 1 123 ASN n 1 124 LEU n 1 125 GLY n 1 126 LEU n 1 127 GLU n 1 128 ILE n 1 129 LYS n 1 130 ASN n 1 131 LYS n 1 132 ILE n 1 133 LEU n 1 134 GLU n 1 135 LYS n 1 136 GLU n 1 137 LYS n 1 138 ILE n 1 139 THR n 1 140 VAL n 1 141 THR n 1 142 VAL n 1 143 GLY n 1 144 ILE n 1 145 SER n 1 146 LYS n 1 147 ASN n 1 148 LYS n 1 149 VAL n 1 150 PHE n 1 151 ALA n 1 152 LYS n 1 153 ILE n 1 154 ALA n 1 155 ALA n 1 156 ASP n 1 157 MET n 1 158 ALA n 1 159 LYS n 1 160 PRO n 1 161 ASN n 1 162 GLY n 1 163 ILE n 1 164 LYS n 1 165 VAL n 1 166 ILE n 1 167 ASP n 1 168 ASP n 1 169 GLU n 1 170 GLU n 1 171 VAL n 1 172 LYS n 1 173 ARG n 1 174 LEU n 1 175 ILE n 1 176 ARG n 1 177 GLU n 1 178 LEU n 1 179 ASP n 1 180 ILE n 1 181 ALA n 1 182 ASP n 1 183 VAL n 1 184 PRO n 1 185 GLY n 1 186 ILE n 1 187 GLY n 1 188 ASN n 1 189 ILE n 1 190 THR n 1 191 ALA n 1 192 GLU n 1 193 LYS n 1 194 LEU n 1 195 LYS n 1 196 LYS n 1 197 LEU n 1 198 GLY n 1 199 ILE n 1 200 ASN n 1 201 LYS n 1 202 LEU n 1 203 VAL n 1 204 ASP n 1 205 THR n 1 206 LEU n 1 207 SER n 1 208 ILE n 1 209 GLU n 1 210 PHE n 1 211 ASP n 1 212 LYS n 1 213 LEU n 1 214 LYS n 1 215 GLY n 1 216 MET n 1 217 ILE n 1 218 GLY n 1 219 GLU n 1 220 ALA n 1 221 LYS n 1 222 ALA n 1 223 LYS n 1 224 TYR n 1 225 LEU n 1 226 ILE n 1 227 SER n 1 228 LEU n 1 229 ALA n 1 230 ARG n 1 231 ASP n 1 232 GLU n 1 233 TYR n 1 234 ASN n 1 235 GLU n 1 236 PRO n 1 237 ILE n 1 238 ARG n 1 239 THR n 1 240 ARG n 1 241 VAL n 1 242 ARG n 1 243 LYS n 1 244 SER n 1 245 ILE n 1 246 GLY n 1 247 ARG n 1 248 ILE n 1 249 VAL n 1 250 THR n 1 251 MET n 1 252 LYS n 1 253 ARG n 1 254 ASN n 1 255 SER n 1 256 ARG n 1 257 ASN n 1 258 LEU n 1 259 GLU n 1 260 GLU n 1 261 ILE n 1 262 LYS n 1 263 PRO n 1 264 TYR n 1 265 LEU n 1 266 PHE n 1 267 ARG n 1 268 ALA n 1 269 ILE n 1 270 GLU n 1 271 GLU n 1 272 SER n 1 273 TYR n 1 274 TYR n 1 275 LYS n 1 276 LEU n 1 277 ASP n 1 278 LYS n 1 279 ARG n 1 280 ILE n 1 281 PRO n 1 282 LYS n 1 283 ALA n 1 284 ILE n 1 285 HIS n 1 286 VAL n 1 287 VAL n 1 288 ALA n 1 289 VAL n 1 290 THR n 1 291 GLU n 1 292 ASP n 1 293 LEU n 1 294 ASP n 1 295 ILE n 1 296 VAL n 1 297 SER n 1 298 ARG n 1 299 GLY n 1 300 ARG n 1 301 THR n 1 302 PHE n 1 303 PRO n 1 304 HIS n 1 305 GLY n 1 306 ILE n 1 307 SER n 1 308 LYS n 1 309 GLU n 1 310 THR n 1 311 ALA n 1 312 TYR n 1 313 SER n 1 314 GLU n 1 315 SER n 1 316 VAL n 1 317 LYS n 1 318 LEU n 1 319 LEU n 1 320 GLN n 1 321 LYS n 1 322 ILE n 1 323 LEU n 1 324 GLU n 1 325 GLU n 1 326 ASP n 1 327 GLU n 1 328 ARG n 1 329 LYS n 1 330 ILE n 1 331 ARG n 1 332 ALA n 1 333 ILE n 1 334 GLY n 1 335 VAL n 1 336 ARG n 1 337 PHE n 1 338 SER n 1 339 LYS n 1 340 PHE n 1 341 ILE n 1 342 GLU n 1 343 ALA n 1 344 ILE n 1 345 GLY n 1 346 LEU n 1 347 ASP n 1 348 LYS n 1 349 PHE n 1 350 PHE n 1 351 ASP n 1 352 THR n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DC n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DA n 2 9 DC n 2 10 DC n 2 11 DG n 2 12 DT n 2 13 DG n 3 1 DC n 3 2 DG n 3 3 DA n 3 4 DT n 3 5 DC n 3 6 DA n 3 7 DC n 3 8 8OG n 3 9 DG n 3 10 DT n 3 11 DA n 3 12 DT n 3 13 DC n 3 14 DG n 3 15 DC n 3 16 DT n 3 17 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 352 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4, SSO2448' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain P2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273057 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 13 'synthetic construct' ? 32630 ? 3 1 sample 1 17 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DTP non-polymer . ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; ? 'C10 H16 N5 O12 P3' 491.182 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 ASN 147 147 147 ASN ASN A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 MET 157 157 157 MET MET A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 ASP 204 204 204 ASP ASP A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 LYS 212 212 212 LYS LYS A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 MET 216 216 216 MET MET A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 TYR 224 224 224 TYR TYR A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 TYR 233 233 233 TYR TYR A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 ILE 237 237 237 ILE ILE A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 THR 239 239 239 THR THR A . n A 1 240 ARG 240 240 240 ARG ARG A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 LYS 243 243 243 LYS LYS A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 ILE 248 248 248 ILE ILE A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 MET 251 251 251 MET MET A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 ASN 254 254 254 ASN ASN A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 ASN 257 257 257 ASN ASN A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 GLU 260 260 260 GLU GLU A . n A 1 261 ILE 261 261 261 ILE ILE A . n A 1 262 LYS 262 262 262 LYS LYS A . n A 1 263 PRO 263 263 263 PRO PRO A . n A 1 264 TYR 264 264 264 TYR TYR A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 PHE 266 266 266 PHE PHE A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 ALA 268 268 268 ALA ALA A . n A 1 269 ILE 269 269 269 ILE ILE A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 GLU 271 271 271 GLU GLU A . n A 1 272 SER 272 272 272 SER SER A . n A 1 273 TYR 273 273 273 TYR TYR A . n A 1 274 TYR 274 274 274 TYR TYR A . n A 1 275 LYS 275 275 275 LYS LYS A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ASP 277 277 277 ASP ASP A . n A 1 278 LYS 278 278 278 LYS LYS A . n A 1 279 ARG 279 279 279 ARG ARG A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 PRO 281 281 281 PRO PRO A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 ALA 283 283 283 ALA ALA A . n A 1 284 ILE 284 284 284 ILE ILE A . n A 1 285 HIS 285 285 285 HIS HIS A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 VAL 287 287 287 VAL VAL A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 VAL 289 289 289 VAL VAL A . n A 1 290 THR 290 290 290 THR THR A . n A 1 291 GLU 291 291 291 GLU GLU A . n A 1 292 ASP 292 292 292 ASP ASP A . n A 1 293 LEU 293 293 293 LEU LEU A . n A 1 294 ASP 294 294 294 ASP ASP A . n A 1 295 ILE 295 295 295 ILE ILE A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 SER 297 297 297 SER SER A . n A 1 298 ARG 298 298 298 ARG ARG A . n A 1 299 GLY 299 299 299 GLY GLY A . n A 1 300 ARG 300 300 300 ARG ARG A . n A 1 301 THR 301 301 301 THR THR A . n A 1 302 PHE 302 302 302 PHE PHE A . n A 1 303 PRO 303 303 303 PRO PRO A . n A 1 304 HIS 304 304 304 HIS HIS A . n A 1 305 GLY 305 305 305 GLY GLY A . n A 1 306 ILE 306 306 306 ILE ILE A . n A 1 307 SER 307 307 307 SER SER A . n A 1 308 LYS 308 308 308 LYS LYS A . n A 1 309 GLU 309 309 309 GLU GLU A . n A 1 310 THR 310 310 310 THR THR A . n A 1 311 ALA 311 311 311 ALA ALA A . n A 1 312 TYR 312 312 312 TYR TYR A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 GLU 314 314 314 GLU GLU A . n A 1 315 SER 315 315 315 SER SER A . n A 1 316 VAL 316 316 316 VAL VAL A . n A 1 317 LYS 317 317 317 LYS LYS A . n A 1 318 LEU 318 318 318 LEU LEU A . n A 1 319 LEU 319 319 319 LEU LEU A . n A 1 320 GLN 320 320 320 GLN GLN A . n A 1 321 LYS 321 321 321 LYS LYS A . n A 1 322 ILE 322 322 322 ILE ILE A . n A 1 323 LEU 323 323 323 LEU LEU A . n A 1 324 GLU 324 324 324 GLU GLU A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 ASP 326 326 326 ASP ASP A . n A 1 327 GLU 327 327 327 GLU GLU A . n A 1 328 ARG 328 328 328 ARG ARG A . n A 1 329 LYS 329 329 329 LYS LYS A . n A 1 330 ILE 330 330 330 ILE ILE A . n A 1 331 ARG 331 331 331 ARG ARG A . n A 1 332 ALA 332 332 332 ALA ALA A . n A 1 333 ILE 333 333 333 ILE ILE A . n A 1 334 GLY 334 334 334 GLY GLY A . n A 1 335 VAL 335 335 335 VAL VAL A . n A 1 336 ARG 336 336 336 ARG ARG A . n A 1 337 PHE 337 337 337 PHE PHE A . n A 1 338 SER 338 338 338 SER SER A . n A 1 339 LYS 339 339 339 LYS LYS A . n A 1 340 PHE 340 340 340 PHE PHE A . n A 1 341 ILE 341 341 341 ILE ILE A . n A 1 342 GLU 342 342 ? ? ? A . n A 1 343 ALA 343 343 ? ? ? A . n A 1 344 ILE 344 344 ? ? ? A . n A 1 345 GLY 345 345 ? ? ? A . n A 1 346 LEU 346 346 ? ? ? A . n A 1 347 ASP 347 347 ? ? ? A . n A 1 348 LYS 348 348 ? ? ? A . n A 1 349 PHE 349 349 ? ? ? A . n A 1 350 PHE 350 350 ? ? ? A . n A 1 351 ASP 351 351 ? ? ? A . n A 1 352 THR 352 352 ? ? ? A . n B 2 1 DG 1 1 1 DG DG P . n B 2 2 DA 2 2 2 DA DA P . n B 2 3 DG 3 3 3 DG DG P . n B 2 4 DC 4 4 4 DC DC P . n B 2 5 DG 5 5 5 DG DG P . n B 2 6 DA 6 6 6 DA DA P . n B 2 7 DT 7 7 7 DT DT P . n B 2 8 DA 8 8 8 DA DA P . n B 2 9 DC 9 9 9 DC DC P . n B 2 10 DC 10 10 10 DC DC P . n B 2 11 DG 11 11 11 DG DG P . n B 2 12 DT 12 12 12 DT DT P . n B 2 13 DG 13 13 13 DG DG P . n C 3 1 DC 1 -2 ? ? ? T . n C 3 2 DG 2 -1 ? ? ? T . n C 3 3 DA 3 0 0 DA DA T . n C 3 4 DT 4 1 1 DT DT T . n C 3 5 DC 5 2 2 DC DC T . n C 3 6 DA 6 3 3 DA DA T . n C 3 7 DC 7 4 4 DC DC T . n C 3 8 8OG 8 5 5 8OG 8OG T . n C 3 9 DG 9 6 6 DG DG T . n C 3 10 DT 10 7 7 DT DT T . n C 3 11 DA 11 8 8 DA DA T . n C 3 12 DT 12 9 9 DT DT T . n C 3 13 DC 13 10 10 DC DC T . n C 3 14 DG 14 11 11 DG DG T . n C 3 15 DC 15 12 12 DC DC T . n C 3 16 DT 16 13 13 DT DT T . n C 3 17 DC 17 14 14 DC DC T . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 8OG ? ? 8OG ? ? 'SUBJECT OF INVESTIGATION' ? 2 DTP ? ? DTP ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DTP 1 401 1 DTP DTP A . E 5 CA 1 402 2 CA CA A . F 6 PO4 1 403 1 PO4 PO4 A . G 7 HOH 1 501 12 HOH HOH A . G 7 HOH 2 502 4 HOH HOH A . G 7 HOH 3 503 17 HOH HOH A . G 7 HOH 4 504 1 HOH HOH A . G 7 HOH 5 505 24 HOH HOH A . G 7 HOH 6 506 10 HOH HOH A . G 7 HOH 7 507 11 HOH HOH A . G 7 HOH 8 508 8 HOH HOH A . G 7 HOH 9 509 6 HOH HOH A . G 7 HOH 10 510 16 HOH HOH A . G 7 HOH 11 511 2 HOH HOH A . G 7 HOH 12 512 21 HOH HOH A . G 7 HOH 13 513 15 HOH HOH A . G 7 HOH 14 514 20 HOH HOH A . G 7 HOH 15 515 19 HOH HOH A . H 7 HOH 1 101 9 HOH HOH P . I 7 HOH 1 101 13 HOH HOH T . I 7 HOH 2 102 23 HOH HOH T . I 7 HOH 3 103 14 HOH HOH T . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A DTP 401 ? PG ? D DTP 1 PG 2 1 N 1 A DTP 401 ? O1G ? D DTP 1 O1G 3 1 N 1 A DTP 401 ? O2G ? D DTP 1 O2G 4 1 N 1 A DTP 401 ? O3G ? D DTP 1 O3G # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? v722 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? v722 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.9.8.8 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9NKD _cell.details ? _cell.formula_units_Z ? _cell.length_a 98.980 _cell.length_a_esd ? _cell.length_b 102.445 _cell.length_b_esd ? _cell.length_c 51.966 _cell.length_c_esd ? _cell.volume 526935.557 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9NKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9NKD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details 'Ambient room temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'calcium acetate, HEPES, PEG-3350' _exptl_crystal_grow.pdbx_pH_range 6.7-7.6 _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-12-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97857 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97857 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 56.34 _reflns.entry_id 9NKD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 25 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18784 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.2 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.079 _reflns.pdbx_Rpim_I_all 0.037 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1831 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.697 _reflns_shell.pdbx_Rpim_I_all 0.320 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.746 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.615 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 63.78 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9NKD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 24.74 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18696 _refine.ls_number_reflns_R_free 1854 _refine.ls_number_reflns_R_work 16842 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.86 _refine.ls_percent_reflns_R_free 9.92 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2176 _refine.ls_R_factor_R_free 0.2798 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2105 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3QZ7 _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.4463 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3697 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 24.74 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 3360 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2737 _refine_hist.pdbx_number_atoms_nucleic_acid 572 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0154 ? 3457 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.4456 ? 4775 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0672 ? 542 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0108 ? 502 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 22.1975 ? 1369 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.50 2.57 . . 136 1271 98.60 . . . . 0.2918 . . . . . . . . . . . . . . . 0.3676 'X-RAY DIFFRACTION' 2.57 2.64 . . 141 1251 98.51 . . . . 0.2827 . . . . . . . . . . . . . . . 0.3541 'X-RAY DIFFRACTION' 2.64 2.73 . . 140 1280 98.82 . . . . 0.2744 . . . . . . . . . . . . . . . 0.3672 'X-RAY DIFFRACTION' 2.73 2.83 . . 146 1267 99.23 . . . . 0.2716 . . . . . . . . . . . . . . . 0.3607 'X-RAY DIFFRACTION' 2.83 2.94 . . 141 1294 99.31 . . . . 0.2747 . . . . . . . . . . . . . . . 0.3425 'X-RAY DIFFRACTION' 2.94 3.07 . . 141 1280 99.65 . . . . 0.2597 . . . . . . . . . . . . . . . 0.3899 'X-RAY DIFFRACTION' 3.07 3.23 . . 146 1300 99.79 . . . . 0.2319 . . . . . . . . . . . . . . . 0.2967 'X-RAY DIFFRACTION' 3.23 3.44 . . 134 1291 99.37 . . . . 0.2336 . . . . . . . . . . . . . . . 0.2956 'X-RAY DIFFRACTION' 3.44 3.70 . . 136 1303 98.29 . . . . 0.2111 . . . . . . . . . . . . . . . 0.3074 'X-RAY DIFFRACTION' 3.70 4.07 . . 144 1261 96.56 . . . . 0.2094 . . . . . . . . . . . . . . . 0.2625 'X-RAY DIFFRACTION' 4.07 4.66 . . 149 1314 99.66 . . . . 0.1631 . . . . . . . . . . . . . . . 0.2583 'X-RAY DIFFRACTION' 4.66 5.85 . . 149 1344 99.53 . . . . 0.1908 . . . . . . . . . . . . . . . 0.2170 'X-RAY DIFFRACTION' 5.86 24.74 . . 151 1386 97.96 . . . . 0.1840 . . . . . . . . . . . . . . . 0.2454 # _struct.entry_id 9NKD _struct.title 'Dpo4 DNA polymerase (R332A) in complex with DNA containing an 8oxoG template lesion' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9NKD _struct_keywords.text 'DNA polymerase Translesion synthesis 8oxoG damage, TRANSFERASE, TRANSFERASE-DNA complex' _struct_keywords.pdbx_keywords TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP DPO4_SACS2 Q97W02 ? 1 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; 1 2 PDB 9NKD 9NKD ? 2 ? 1 3 PDB 9NKD 9NKD ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9NKD A 1 ? 352 ? Q97W02 1 ? 352 ? 1 352 2 2 9NKD P 1 ? 13 ? 9NKD 1 ? 13 ? 1 13 3 3 9NKD T 1 ? 17 ? 9NKD -2 ? 14 ? -2 14 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 9NKD _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 332 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97W02 _struct_ref_seq_dif.db_mon_id ARG _struct_ref_seq_dif.pdbx_seq_db_seq_num 332 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 332 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6110 ? 1 MORE -51 ? 1 'SSA (A^2)' 19690 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 10 ? ASN A 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 AA2 PRO A 21 ? LYS A 24 ? PRO A 21 LYS A 24 5 ? 4 HELX_P HELX_P3 AA3 ASN A 47 ? LYS A 52 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P4 AA4 PRO A 60 ? LEU A 68 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P5 AA5 ARG A 77 ? ARG A 93 ? ARG A 77 ARG A 93 1 ? 17 HELX_P HELX_P6 AA6 SER A 112 ? VAL A 115 ? SER A 112 VAL A 115 5 ? 4 HELX_P HELX_P7 AA7 ASP A 117 ? LYS A 137 ? ASP A 117 LYS A 137 1 ? 21 HELX_P HELX_P8 AA8 ASN A 147 ? LYS A 159 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P9 AA9 ASP A 167 ? LEU A 178 ? ASP A 167 LEU A 178 1 ? 12 HELX_P HELX_P10 AB1 ASP A 179 ? VAL A 183 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P11 AB2 GLY A 187 ? LYS A 196 ? GLY A 187 LYS A 196 1 ? 10 HELX_P HELX_P12 AB3 LYS A 201 ? SER A 207 ? LYS A 201 SER A 207 5 ? 7 HELX_P HELX_P13 AB4 GLU A 209 ? GLY A 218 ? GLU A 209 GLY A 218 1 ? 10 HELX_P HELX_P14 AB5 GLY A 218 ? ARG A 230 ? GLY A 218 ARG A 230 1 ? 13 HELX_P HELX_P15 AB6 ASN A 257 ? LYS A 275 ? ASN A 257 LYS A 275 1 ? 19 HELX_P HELX_P16 AB7 SER A 307 ? GLU A 325 ? SER A 307 GLU A 325 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DC 7 "O3'" ? ? ? 1_555 C 8OG 8 P ? ? T DC 4 T 8OG 5 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale2 covale both ? C 8OG 8 "O3'" ? ? ? 1_555 C DG 9 P ? ? T 8OG 5 T DG 6 1_555 ? ? ? ? ? ? ? 1.616 ? ? metalc1 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 402 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc2 metalc ? ? A PHE 8 O ? ? ? 1_555 E CA . CA ? ? A PHE 8 A CA 402 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc3 metalc ? ? A ASP 105 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 105 A CA 402 1_555 ? ? ? ? ? ? ? 2.826 ? ? metalc4 metalc ? ? A ASP 105 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 105 A CA 402 1_555 ? ? ? ? ? ? ? 2.713 ? ? metalc5 metalc ? ? D DTP . O1B ? ? ? 1_555 E CA . CA ? ? A DTP 401 A CA 402 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc6 metalc ? ? D DTP . O1A ? ? ? 1_555 E CA . CA ? ? A DTP 401 A CA 402 1_555 ? ? ? ? ? ? ? 2.452 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 17 N3 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 17 O2 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 17 N4 ? ? P DG 1 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 16 N3 ? ? P DA 2 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 16 O4 ? ? P DA 2 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 15 N3 ? ? P DG 3 T DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 15 O2 ? ? P DG 3 T DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 15 N4 ? ? P DG 3 T DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 14 N1 ? ? P DC 4 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 14 O6 ? ? P DC 4 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 14 N2 ? ? P DC 4 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 13 N3 ? ? P DG 5 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 13 O2 ? ? P DG 5 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 13 N4 ? ? P DG 5 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 12 N3 ? ? P DA 6 T DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 12 O4 ? ? P DA 6 T DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 11 N1 ? ? P DT 7 T DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 11 N6 ? ? P DT 7 T DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 10 N3 ? ? P DA 8 T DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 10 O4 ? ? P DA 8 T DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 9 N1 ? ? P DC 9 T DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 9 O6 ? ? P DC 9 T DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 9 N2 ? ? P DC 9 T DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C 8OG 8 N1 ? ? P DC 10 T 8OG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C 8OG 8 O6 ? ? P DC 10 T 8OG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C 8OG 8 N2 ? ? P DC 10 T 8OG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 7 N3 ? ? P DG 11 T DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 7 O2 ? ? P DG 11 T DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 7 N4 ? ? P DG 11 T DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 6 N1 ? ? P DT 12 T DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 6 N6 ? ? P DT 12 T DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 5 N3 ? ? P DG 13 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 5 O2 ? ? P DG 13 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 5 N4 ? ? P DG 13 T DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O ? A PHE 8 ? A PHE 8 ? 1_555 91.1 ? 2 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 74.3 ? 3 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 63.8 ? 4 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 76.2 ? 5 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 110.7 ? 6 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 47.1 ? 7 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1B ? D DTP . ? A DTP 401 ? 1_555 178.2 ? 8 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1B ? D DTP . ? A DTP 401 ? 1_555 90.2 ? 9 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1B ? D DTP . ? A DTP 401 ? 1_555 107.5 ? 10 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1B ? D DTP . ? A DTP 401 ? 1_555 104.6 ? 11 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1A ? D DTP . ? A DTP 401 ? 1_555 102.5 ? 12 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1A ? D DTP . ? A DTP 401 ? 1_555 166.0 ? 13 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1A ? D DTP . ? A DTP 401 ? 1_555 116.6 ? 14 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1A ? D DTP . ? A DTP 401 ? 1_555 70.2 ? 15 O1B ? D DTP . ? A DTP 401 ? 1_555 CA ? E CA . ? A CA 402 ? 1_555 O1A ? D DTP . ? A DTP 401 ? 1_555 76.3 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 99 ? SER A 103 ? ILE A 99 SER A 103 AA1 2 GLU A 106 ? ASP A 110 ? GLU A 106 ASP A 110 AA1 3 VAL A 3 ? PHE A 8 ? VAL A 3 PHE A 8 AA1 4 VAL A 140 ? SER A 145 ? VAL A 140 SER A 145 AA1 5 ILE A 163 ? VAL A 165 ? ILE A 163 VAL A 165 AA2 1 GLY A 41 ? ALA A 46 ? GLY A 41 ALA A 46 AA2 2 VAL A 28 ? PHE A 33 ? VAL A 28 PHE A 33 AA2 3 VAL A 72 ? PRO A 75 ? VAL A 72 PRO A 75 AA3 1 SER A 244 ? SER A 255 ? SER A 244 SER A 255 AA3 2 ILE A 330 ? PHE A 340 ? ILE A 330 PHE A 340 AA3 3 PRO A 281 ? THR A 290 ? PRO A 281 THR A 290 AA3 4 ILE A 295 ? THR A 301 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 100 ? N GLU A 100 O TYR A 108 ? O TYR A 108 AA1 2 3 O ALA A 107 ? O ALA A 107 N VAL A 6 ? N VAL A 6 AA1 3 4 N VAL A 3 ? N VAL A 3 O SER A 145 ? O SER A 145 AA1 4 5 N ILE A 144 ? N ILE A 144 O LYS A 164 ? O LYS A 164 AA2 1 2 O THR A 45 ? O THR A 45 N VAL A 30 ? N VAL A 30 AA2 2 3 N CYS A 31 ? N CYS A 31 O LEU A 74 ? O LEU A 74 AA3 1 2 N SER A 255 ? N SER A 255 O ILE A 330 ? O ILE A 330 AA3 2 3 O ARG A 331 ? O ARG A 331 N VAL A 289 ? N VAL A 289 AA3 3 4 N VAL A 286 ? N VAL A 286 O ARG A 298 ? O ARG A 298 # _pdbx_entry_details.entry_id 9NKD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N3 P DC 10 ? ? H1 T 8OG 5 ? ? 1.50 2 1 H22 P DG 13 ? ? O2 T DC 2 ? ? 1.54 3 1 O A LEU 194 ? ? H A LEU 197 ? ? 1.56 4 1 HH22 A ARG 36 ? ? OD1 A ASN 254 ? ? 1.57 5 1 O A ALA 268 ? ? HG A SER 272 ? ? 1.59 6 1 OG1 A THR 190 ? ? OP1 P DG 11 ? ? 1.85 7 1 OE2 A GLU 270 ? ? OH A TYR 312 ? ? 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C1'" T DT 1 ? ? N1 T DT 1 ? ? 1.572 1.488 0.084 0.013 N 2 1 "O3'" T DA 3 ? ? "C3'" T DA 3 ? ? 1.354 1.419 -0.065 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" P DA 2 ? ? "C1'" P DA 2 ? ? N9 P DA 2 ? ? 111.43 108.30 3.13 0.30 N 2 1 "O4'" P DG 5 ? ? "C1'" P DG 5 ? ? N9 P DG 5 ? ? 110.42 108.30 2.12 0.30 N 3 1 N3 T DT 1 ? ? C4 T DT 1 ? ? O4 T DT 1 ? ? 123.51 119.90 3.61 0.60 N 4 1 "O4'" T DC 4 ? ? "C1'" T DC 4 ? ? N1 T DC 4 ? ? 110.20 108.30 1.90 0.30 N 5 1 "O4'" T DT 7 ? ? "C1'" T DT 7 ? ? N1 T DT 7 ? ? 112.47 108.30 4.17 0.30 N 6 1 "O4'" T DC 12 ? ? "C1'" T DC 12 ? ? N1 T DC 12 ? ? 111.16 108.30 2.86 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 32.41 44.26 2 1 ARG A 77 ? ? -116.01 73.56 3 1 SER A 96 ? ? -172.35 135.36 4 1 SER A 145 ? ? -171.69 -169.61 5 1 ASN A 161 ? ? 36.69 67.59 6 1 ASN A 200 ? ? -131.62 -32.01 7 1 ILE A 245 ? ? -160.82 114.09 8 1 ASN A 254 ? ? -48.17 164.04 9 1 ASP A 277 ? ? 44.33 -134.21 10 1 GLU A 325 ? ? -64.48 7.34 11 1 LYS A 339 ? ? 60.11 67.40 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x+1/2,y+1/2,-z 4 -x,-y,z # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 342 ? A GLU 342 2 1 Y 1 A ALA 343 ? A ALA 343 3 1 Y 1 A ILE 344 ? A ILE 344 4 1 Y 1 A GLY 345 ? A GLY 345 5 1 Y 1 A LEU 346 ? A LEU 346 6 1 Y 1 A ASP 347 ? A ASP 347 7 1 Y 1 A LYS 348 ? A LYS 348 8 1 Y 1 A PHE 349 ? A PHE 349 9 1 Y 1 A PHE 350 ? A PHE 350 10 1 Y 1 A ASP 351 ? A ASP 351 11 1 Y 1 A THR 352 ? A THR 352 12 1 Y 1 T DC -2 ? C DC 1 13 1 Y 1 T DG -1 ? C DG 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8OG OP3 O N N 1 8OG P P N N 2 8OG OP1 O N N 3 8OG OP2 O N N 4 8OG "O5'" O N N 5 8OG "C5'" C N N 6 8OG "C4'" C N R 7 8OG "O4'" O N N 8 8OG "C3'" C N S 9 8OG "O3'" O N N 10 8OG "C2'" C N N 11 8OG "C1'" C N R 12 8OG N9 N N N 13 8OG C8 C N N 14 8OG N7 N N N 15 8OG C5 C N N 16 8OG C6 C N N 17 8OG O6 O N N 18 8OG N1 N N N 19 8OG C2 C N N 20 8OG N2 N N N 21 8OG N3 N N N 22 8OG C4 C N N 23 8OG O8 O N N 24 8OG HOP3 H N N 25 8OG HOP2 H N N 26 8OG "H5'" H N N 27 8OG "H5''" H N N 28 8OG "H4'" H N N 29 8OG "H3'" H N N 30 8OG "HO3'" H N N 31 8OG "H2'" H N N 32 8OG "H2''" H N N 33 8OG "H1'" H N N 34 8OG H7 H N N 35 8OG H1 H N N 36 8OG H21 H N N 37 8OG H22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CA CA CA N N 112 CYS N N N N 113 CYS CA C N R 114 CYS C C N N 115 CYS O O N N 116 CYS CB C N N 117 CYS SG S N N 118 CYS OXT O N N 119 CYS H H N N 120 CYS H2 H N N 121 CYS HA H N N 122 CYS HB2 H N N 123 CYS HB3 H N N 124 CYS HG H N N 125 CYS HXT H N N 126 DA OP3 O N N 127 DA P P N N 128 DA OP1 O N N 129 DA OP2 O N N 130 DA "O5'" O N N 131 DA "C5'" C N N 132 DA "C4'" C N R 133 DA "O4'" O N N 134 DA "C3'" C N S 135 DA "O3'" O N N 136 DA "C2'" C N N 137 DA "C1'" C N R 138 DA N9 N Y N 139 DA C8 C Y N 140 DA N7 N Y N 141 DA C5 C Y N 142 DA C6 C Y N 143 DA N6 N N N 144 DA N1 N Y N 145 DA C2 C Y N 146 DA N3 N Y N 147 DA C4 C Y N 148 DA HOP3 H N N 149 DA HOP2 H N N 150 DA "H5'" H N N 151 DA "H5''" H N N 152 DA "H4'" H N N 153 DA "H3'" H N N 154 DA "HO3'" H N N 155 DA "H2'" H N N 156 DA "H2''" H N N 157 DA "H1'" H N N 158 DA H8 H N N 159 DA H61 H N N 160 DA H62 H N N 161 DA H2 H N N 162 DC OP3 O N N 163 DC P P N N 164 DC OP1 O N N 165 DC OP2 O N N 166 DC "O5'" O N N 167 DC "C5'" C N N 168 DC "C4'" C N R 169 DC "O4'" O N N 170 DC "C3'" C N S 171 DC "O3'" O N N 172 DC "C2'" C N N 173 DC "C1'" C N R 174 DC N1 N N N 175 DC C2 C N N 176 DC O2 O N N 177 DC N3 N N N 178 DC C4 C N N 179 DC N4 N N N 180 DC C5 C N N 181 DC C6 C N N 182 DC HOP3 H N N 183 DC HOP2 H N N 184 DC "H5'" H N N 185 DC "H5''" H N N 186 DC "H4'" H N N 187 DC "H3'" H N N 188 DC "HO3'" H N N 189 DC "H2'" H N N 190 DC "H2''" H N N 191 DC "H1'" H N N 192 DC H41 H N N 193 DC H42 H N N 194 DC H5 H N N 195 DC H6 H N N 196 DG OP3 O N N 197 DG P P N N 198 DG OP1 O N N 199 DG OP2 O N N 200 DG "O5'" O N N 201 DG "C5'" C N N 202 DG "C4'" C N R 203 DG "O4'" O N N 204 DG "C3'" C N S 205 DG "O3'" O N N 206 DG "C2'" C N N 207 DG "C1'" C N R 208 DG N9 N Y N 209 DG C8 C Y N 210 DG N7 N Y N 211 DG C5 C Y N 212 DG C6 C N N 213 DG O6 O N N 214 DG N1 N N N 215 DG C2 C N N 216 DG N2 N N N 217 DG N3 N N N 218 DG C4 C Y N 219 DG HOP3 H N N 220 DG HOP2 H N N 221 DG "H5'" H N N 222 DG "H5''" H N N 223 DG "H4'" H N N 224 DG "H3'" H N N 225 DG "HO3'" H N N 226 DG "H2'" H N N 227 DG "H2''" H N N 228 DG "H1'" H N N 229 DG H8 H N N 230 DG H1 H N N 231 DG H21 H N N 232 DG H22 H N N 233 DT OP3 O N N 234 DT P P N N 235 DT OP1 O N N 236 DT OP2 O N N 237 DT "O5'" O N N 238 DT "C5'" C N N 239 DT "C4'" C N R 240 DT "O4'" O N N 241 DT "C3'" C N S 242 DT "O3'" O N N 243 DT "C2'" C N N 244 DT "C1'" C N R 245 DT N1 N N N 246 DT C2 C N N 247 DT O2 O N N 248 DT N3 N N N 249 DT C4 C N N 250 DT O4 O N N 251 DT C5 C N N 252 DT C7 C N N 253 DT C6 C N N 254 DT HOP3 H N N 255 DT HOP2 H N N 256 DT "H5'" H N N 257 DT "H5''" H N N 258 DT "H4'" H N N 259 DT "H3'" H N N 260 DT "HO3'" H N N 261 DT "H2'" H N N 262 DT "H2''" H N N 263 DT "H1'" H N N 264 DT H3 H N N 265 DT H71 H N N 266 DT H72 H N N 267 DT H73 H N N 268 DT H6 H N N 269 DTP PG P N N 270 DTP O1G O N N 271 DTP O2G O N N 272 DTP O3G O N N 273 DTP PB P N S 274 DTP O1B O N N 275 DTP O2B O N N 276 DTP O3B O N N 277 DTP PA P N S 278 DTP O1A O N N 279 DTP O2A O N N 280 DTP O3A O N N 281 DTP "O5'" O N N 282 DTP "C5'" C N N 283 DTP "C4'" C N R 284 DTP "O4'" O N N 285 DTP "C3'" C N S 286 DTP "O3'" O N N 287 DTP "C2'" C N N 288 DTP "C1'" C N R 289 DTP N9 N Y N 290 DTP C8 C Y N 291 DTP N7 N Y N 292 DTP C5 C Y N 293 DTP C6 C Y N 294 DTP N6 N N N 295 DTP N1 N Y N 296 DTP C2 C Y N 297 DTP N3 N Y N 298 DTP C4 C Y N 299 DTP HOG2 H N N 300 DTP HOG3 H N N 301 DTP HOB2 H N N 302 DTP HOA2 H N N 303 DTP "H5'1" H N N 304 DTP "H5'2" H N N 305 DTP "H4'" H N N 306 DTP "H3'" H N N 307 DTP "HO3'" H N N 308 DTP "H2'1" H N N 309 DTP "H2'2" H N N 310 DTP "H1'" H N N 311 DTP H8 H N N 312 DTP HN61 H N N 313 DTP HN62 H N N 314 DTP H2 H N N 315 GLN N N N N 316 GLN CA C N S 317 GLN C C N N 318 GLN O O N N 319 GLN CB C N N 320 GLN CG C N N 321 GLN CD C N N 322 GLN OE1 O N N 323 GLN NE2 N N N 324 GLN OXT O N N 325 GLN H H N N 326 GLN H2 H N N 327 GLN HA H N N 328 GLN HB2 H N N 329 GLN HB3 H N N 330 GLN HG2 H N N 331 GLN HG3 H N N 332 GLN HE21 H N N 333 GLN HE22 H N N 334 GLN HXT H N N 335 GLU N N N N 336 GLU CA C N S 337 GLU C C N N 338 GLU O O N N 339 GLU CB C N N 340 GLU CG C N N 341 GLU CD C N N 342 GLU OE1 O N N 343 GLU OE2 O N N 344 GLU OXT O N N 345 GLU H H N N 346 GLU H2 H N N 347 GLU HA H N N 348 GLU HB2 H N N 349 GLU HB3 H N N 350 GLU HG2 H N N 351 GLU HG3 H N N 352 GLU HE2 H N N 353 GLU HXT H N N 354 GLY N N N N 355 GLY CA C N N 356 GLY C C N N 357 GLY O O N N 358 GLY OXT O N N 359 GLY H H N N 360 GLY H2 H N N 361 GLY HA2 H N N 362 GLY HA3 H N N 363 GLY HXT H N N 364 HIS N N N N 365 HIS CA C N S 366 HIS C C N N 367 HIS O O N N 368 HIS CB C N N 369 HIS CG C Y N 370 HIS ND1 N Y N 371 HIS CD2 C Y N 372 HIS CE1 C Y N 373 HIS NE2 N Y N 374 HIS OXT O N N 375 HIS H H N N 376 HIS H2 H N N 377 HIS HA H N N 378 HIS HB2 H N N 379 HIS HB3 H N N 380 HIS HD1 H N N 381 HIS HD2 H N N 382 HIS HE1 H N N 383 HIS HE2 H N N 384 HIS HXT H N N 385 HOH O O N N 386 HOH H1 H N N 387 HOH H2 H N N 388 ILE N N N N 389 ILE CA C N S 390 ILE C C N N 391 ILE O O N N 392 ILE CB C N S 393 ILE CG1 C N N 394 ILE CG2 C N N 395 ILE CD1 C N N 396 ILE OXT O N N 397 ILE H H N N 398 ILE H2 H N N 399 ILE HA H N N 400 ILE HB H N N 401 ILE HG12 H N N 402 ILE HG13 H N N 403 ILE HG21 H N N 404 ILE HG22 H N N 405 ILE HG23 H N N 406 ILE HD11 H N N 407 ILE HD12 H N N 408 ILE HD13 H N N 409 ILE HXT H N N 410 LEU N N N N 411 LEU CA C N S 412 LEU C C N N 413 LEU O O N N 414 LEU CB C N N 415 LEU CG C N N 416 LEU CD1 C N N 417 LEU CD2 C N N 418 LEU OXT O N N 419 LEU H H N N 420 LEU H2 H N N 421 LEU HA H N N 422 LEU HB2 H N N 423 LEU HB3 H N N 424 LEU HG H N N 425 LEU HD11 H N N 426 LEU HD12 H N N 427 LEU HD13 H N N 428 LEU HD21 H N N 429 LEU HD22 H N N 430 LEU HD23 H N N 431 LEU HXT H N N 432 LYS N N N N 433 LYS CA C N S 434 LYS C C N N 435 LYS O O N N 436 LYS CB C N N 437 LYS CG C N N 438 LYS CD C N N 439 LYS CE C N N 440 LYS NZ N N N 441 LYS OXT O N N 442 LYS H H N N 443 LYS H2 H N N 444 LYS HA H N N 445 LYS HB2 H N N 446 LYS HB3 H N N 447 LYS HG2 H N N 448 LYS HG3 H N N 449 LYS HD2 H N N 450 LYS HD3 H N N 451 LYS HE2 H N N 452 LYS HE3 H N N 453 LYS HZ1 H N N 454 LYS HZ2 H N N 455 LYS HZ3 H N N 456 LYS HXT H N N 457 MET N N N N 458 MET CA C N S 459 MET C C N N 460 MET O O N N 461 MET CB C N N 462 MET CG C N N 463 MET SD S N N 464 MET CE C N N 465 MET OXT O N N 466 MET H H N N 467 MET H2 H N N 468 MET HA H N N 469 MET HB2 H N N 470 MET HB3 H N N 471 MET HG2 H N N 472 MET HG3 H N N 473 MET HE1 H N N 474 MET HE2 H N N 475 MET HE3 H N N 476 MET HXT H N N 477 PHE N N N N 478 PHE CA C N S 479 PHE C C N N 480 PHE O O N N 481 PHE CB C N N 482 PHE CG C Y N 483 PHE CD1 C Y N 484 PHE CD2 C Y N 485 PHE CE1 C Y N 486 PHE CE2 C Y N 487 PHE CZ C Y N 488 PHE OXT O N N 489 PHE H H N N 490 PHE H2 H N N 491 PHE HA H N N 492 PHE HB2 H N N 493 PHE HB3 H N N 494 PHE HD1 H N N 495 PHE HD2 H N N 496 PHE HE1 H N N 497 PHE HE2 H N N 498 PHE HZ H N N 499 PHE HXT H N N 500 PO4 P P N N 501 PO4 O1 O N N 502 PO4 O2 O N N 503 PO4 O3 O N N 504 PO4 O4 O N N 505 PRO N N N N 506 PRO CA C N S 507 PRO C C N N 508 PRO O O N N 509 PRO CB C N N 510 PRO CG C N N 511 PRO CD C N N 512 PRO OXT O N N 513 PRO H H N N 514 PRO HA H N N 515 PRO HB2 H N N 516 PRO HB3 H N N 517 PRO HG2 H N N 518 PRO HG3 H N N 519 PRO HD2 H N N 520 PRO HD3 H N N 521 PRO HXT H N N 522 SER N N N N 523 SER CA C N S 524 SER C C N N 525 SER O O N N 526 SER CB C N N 527 SER OG O N N 528 SER OXT O N N 529 SER H H N N 530 SER H2 H N N 531 SER HA H N N 532 SER HB2 H N N 533 SER HB3 H N N 534 SER HG H N N 535 SER HXT H N N 536 THR N N N N 537 THR CA C N S 538 THR C C N N 539 THR O O N N 540 THR CB C N R 541 THR OG1 O N N 542 THR CG2 C N N 543 THR OXT O N N 544 THR H H N N 545 THR H2 H N N 546 THR HA H N N 547 THR HB H N N 548 THR HG1 H N N 549 THR HG21 H N N 550 THR HG22 H N N 551 THR HG23 H N N 552 THR HXT H N N 553 TYR N N N N 554 TYR CA C N S 555 TYR C C N N 556 TYR O O N N 557 TYR CB C N N 558 TYR CG C Y N 559 TYR CD1 C Y N 560 TYR CD2 C Y N 561 TYR CE1 C Y N 562 TYR CE2 C Y N 563 TYR CZ C Y N 564 TYR OH O N N 565 TYR OXT O N N 566 TYR H H N N 567 TYR H2 H N N 568 TYR HA H N N 569 TYR HB2 H N N 570 TYR HB3 H N N 571 TYR HD1 H N N 572 TYR HD2 H N N 573 TYR HE1 H N N 574 TYR HE2 H N N 575 TYR HH H N N 576 TYR HXT H N N 577 VAL N N N N 578 VAL CA C N S 579 VAL C C N N 580 VAL O O N N 581 VAL CB C N N 582 VAL CG1 C N N 583 VAL CG2 C N N 584 VAL OXT O N N 585 VAL H H N N 586 VAL H2 H N N 587 VAL HA H N N 588 VAL HB H N N 589 VAL HG11 H N N 590 VAL HG12 H N N 591 VAL HG13 H N N 592 VAL HG21 H N N 593 VAL HG22 H N N 594 VAL HG23 H N N 595 VAL HXT H N N 596 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8OG OP3 P sing N N 1 8OG OP3 HOP3 sing N N 2 8OG P OP1 doub N N 3 8OG P OP2 sing N N 4 8OG P "O5'" sing N N 5 8OG OP2 HOP2 sing N N 6 8OG "O5'" "C5'" sing N N 7 8OG "C5'" "C4'" sing N N 8 8OG "C5'" "H5'" sing N N 9 8OG "C5'" "H5''" sing N N 10 8OG "C4'" "O4'" sing N N 11 8OG "C4'" "C3'" sing N N 12 8OG "C4'" "H4'" sing N N 13 8OG "O4'" "C1'" sing N N 14 8OG "C3'" "O3'" sing N N 15 8OG "C3'" "C2'" sing N N 16 8OG "C3'" "H3'" sing N N 17 8OG "O3'" "HO3'" sing N N 18 8OG "C2'" "C1'" sing N N 19 8OG "C2'" "H2'" sing N N 20 8OG "C2'" "H2''" sing N N 21 8OG "C1'" N9 sing N N 22 8OG "C1'" "H1'" sing N N 23 8OG N9 C8 sing N N 24 8OG N9 C4 sing N N 25 8OG C8 N7 sing N N 26 8OG C8 O8 doub N N 27 8OG N7 C5 sing N N 28 8OG N7 H7 sing N N 29 8OG C5 C6 sing N N 30 8OG C5 C4 doub N N 31 8OG C6 O6 doub N N 32 8OG C6 N1 sing N N 33 8OG N1 C2 sing N N 34 8OG N1 H1 sing N N 35 8OG C2 N2 sing N N 36 8OG C2 N3 doub N N 37 8OG N2 H21 sing N N 38 8OG N2 H22 sing N N 39 8OG N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 DA OP3 P sing N N 123 DA OP3 HOP3 sing N N 124 DA P OP1 doub N N 125 DA P OP2 sing N N 126 DA P "O5'" sing N N 127 DA OP2 HOP2 sing N N 128 DA "O5'" "C5'" sing N N 129 DA "C5'" "C4'" sing N N 130 DA "C5'" "H5'" sing N N 131 DA "C5'" "H5''" sing N N 132 DA "C4'" "O4'" sing N N 133 DA "C4'" "C3'" sing N N 134 DA "C4'" "H4'" sing N N 135 DA "O4'" "C1'" sing N N 136 DA "C3'" "O3'" sing N N 137 DA "C3'" "C2'" sing N N 138 DA "C3'" "H3'" sing N N 139 DA "O3'" "HO3'" sing N N 140 DA "C2'" "C1'" sing N N 141 DA "C2'" "H2'" sing N N 142 DA "C2'" "H2''" sing N N 143 DA "C1'" N9 sing N N 144 DA "C1'" "H1'" sing N N 145 DA N9 C8 sing Y N 146 DA N9 C4 sing Y N 147 DA C8 N7 doub Y N 148 DA C8 H8 sing N N 149 DA N7 C5 sing Y N 150 DA C5 C6 sing Y N 151 DA C5 C4 doub Y N 152 DA C6 N6 sing N N 153 DA C6 N1 doub Y N 154 DA N6 H61 sing N N 155 DA N6 H62 sing N N 156 DA N1 C2 sing Y N 157 DA C2 N3 doub Y N 158 DA C2 H2 sing N N 159 DA N3 C4 sing Y N 160 DC OP3 P sing N N 161 DC OP3 HOP3 sing N N 162 DC P OP1 doub N N 163 DC P OP2 sing N N 164 DC P "O5'" sing N N 165 DC OP2 HOP2 sing N N 166 DC "O5'" "C5'" sing N N 167 DC "C5'" "C4'" sing N N 168 DC "C5'" "H5'" sing N N 169 DC "C5'" "H5''" sing N N 170 DC "C4'" "O4'" sing N N 171 DC "C4'" "C3'" sing N N 172 DC "C4'" "H4'" sing N N 173 DC "O4'" "C1'" sing N N 174 DC "C3'" "O3'" sing N N 175 DC "C3'" "C2'" sing N N 176 DC "C3'" "H3'" sing N N 177 DC "O3'" "HO3'" sing N N 178 DC "C2'" "C1'" sing N N 179 DC "C2'" "H2'" sing N N 180 DC "C2'" "H2''" sing N N 181 DC "C1'" N1 sing N N 182 DC "C1'" "H1'" sing N N 183 DC N1 C2 sing N N 184 DC N1 C6 sing N N 185 DC C2 O2 doub N N 186 DC C2 N3 sing N N 187 DC N3 C4 doub N N 188 DC C4 N4 sing N N 189 DC C4 C5 sing N N 190 DC N4 H41 sing N N 191 DC N4 H42 sing N N 192 DC C5 C6 doub N N 193 DC C5 H5 sing N N 194 DC C6 H6 sing N N 195 DG OP3 P sing N N 196 DG OP3 HOP3 sing N N 197 DG P OP1 doub N N 198 DG P OP2 sing N N 199 DG P "O5'" sing N N 200 DG OP2 HOP2 sing N N 201 DG "O5'" "C5'" sing N N 202 DG "C5'" "C4'" sing N N 203 DG "C5'" "H5'" sing N N 204 DG "C5'" "H5''" sing N N 205 DG "C4'" "O4'" sing N N 206 DG "C4'" "C3'" sing N N 207 DG "C4'" "H4'" sing N N 208 DG "O4'" "C1'" sing N N 209 DG "C3'" "O3'" sing N N 210 DG "C3'" "C2'" sing N N 211 DG "C3'" "H3'" sing N N 212 DG "O3'" "HO3'" sing N N 213 DG "C2'" "C1'" sing N N 214 DG "C2'" "H2'" sing N N 215 DG "C2'" "H2''" sing N N 216 DG "C1'" N9 sing N N 217 DG "C1'" "H1'" sing N N 218 DG N9 C8 sing Y N 219 DG N9 C4 sing Y N 220 DG C8 N7 doub Y N 221 DG C8 H8 sing N N 222 DG N7 C5 sing Y N 223 DG C5 C6 sing N N 224 DG C5 C4 doub Y N 225 DG C6 O6 doub N N 226 DG C6 N1 sing N N 227 DG N1 C2 sing N N 228 DG N1 H1 sing N N 229 DG C2 N2 sing N N 230 DG C2 N3 doub N N 231 DG N2 H21 sing N N 232 DG N2 H22 sing N N 233 DG N3 C4 sing N N 234 DT OP3 P sing N N 235 DT OP3 HOP3 sing N N 236 DT P OP1 doub N N 237 DT P OP2 sing N N 238 DT P "O5'" sing N N 239 DT OP2 HOP2 sing N N 240 DT "O5'" "C5'" sing N N 241 DT "C5'" "C4'" sing N N 242 DT "C5'" "H5'" sing N N 243 DT "C5'" "H5''" sing N N 244 DT "C4'" "O4'" sing N N 245 DT "C4'" "C3'" sing N N 246 DT "C4'" "H4'" sing N N 247 DT "O4'" "C1'" sing N N 248 DT "C3'" "O3'" sing N N 249 DT "C3'" "C2'" sing N N 250 DT "C3'" "H3'" sing N N 251 DT "O3'" "HO3'" sing N N 252 DT "C2'" "C1'" sing N N 253 DT "C2'" "H2'" sing N N 254 DT "C2'" "H2''" sing N N 255 DT "C1'" N1 sing N N 256 DT "C1'" "H1'" sing N N 257 DT N1 C2 sing N N 258 DT N1 C6 sing N N 259 DT C2 O2 doub N N 260 DT C2 N3 sing N N 261 DT N3 C4 sing N N 262 DT N3 H3 sing N N 263 DT C4 O4 doub N N 264 DT C4 C5 sing N N 265 DT C5 C7 sing N N 266 DT C5 C6 doub N N 267 DT C7 H71 sing N N 268 DT C7 H72 sing N N 269 DT C7 H73 sing N N 270 DT C6 H6 sing N N 271 DTP PG O1G doub N N 272 DTP PG O2G sing N N 273 DTP PG O3G sing N N 274 DTP PG O3B sing N N 275 DTP O2G HOG2 sing N N 276 DTP O3G HOG3 sing N N 277 DTP PB O1B doub N N 278 DTP PB O2B sing N N 279 DTP PB O3B sing N N 280 DTP PB O3A sing N N 281 DTP O2B HOB2 sing N N 282 DTP PA O1A doub N N 283 DTP PA O2A sing N N 284 DTP PA O3A sing N N 285 DTP PA "O5'" sing N N 286 DTP O2A HOA2 sing N N 287 DTP "O5'" "C5'" sing N N 288 DTP "C5'" "C4'" sing N N 289 DTP "C5'" "H5'1" sing N N 290 DTP "C5'" "H5'2" sing N N 291 DTP "C4'" "O4'" sing N N 292 DTP "C4'" "C3'" sing N N 293 DTP "C4'" "H4'" sing N N 294 DTP "O4'" "C1'" sing N N 295 DTP "C3'" "O3'" sing N N 296 DTP "C3'" "C2'" sing N N 297 DTP "C3'" "H3'" sing N N 298 DTP "O3'" "HO3'" sing N N 299 DTP "C2'" "C1'" sing N N 300 DTP "C2'" "H2'1" sing N N 301 DTP "C2'" "H2'2" sing N N 302 DTP "C1'" N9 sing N N 303 DTP "C1'" "H1'" sing N N 304 DTP N9 C8 sing Y N 305 DTP N9 C4 sing Y N 306 DTP C8 N7 doub Y N 307 DTP C8 H8 sing N N 308 DTP N7 C5 sing Y N 309 DTP C5 C6 sing Y N 310 DTP C5 C4 doub Y N 311 DTP C6 N6 sing N N 312 DTP C6 N1 doub Y N 313 DTP N6 HN61 sing N N 314 DTP N6 HN62 sing N N 315 DTP N1 C2 sing Y N 316 DTP C2 N3 doub Y N 317 DTP C2 H2 sing N N 318 DTP N3 C4 sing Y N 319 GLN N CA sing N N 320 GLN N H sing N N 321 GLN N H2 sing N N 322 GLN CA C sing N N 323 GLN CA CB sing N N 324 GLN CA HA sing N N 325 GLN C O doub N N 326 GLN C OXT sing N N 327 GLN CB CG sing N N 328 GLN CB HB2 sing N N 329 GLN CB HB3 sing N N 330 GLN CG CD sing N N 331 GLN CG HG2 sing N N 332 GLN CG HG3 sing N N 333 GLN CD OE1 doub N N 334 GLN CD NE2 sing N N 335 GLN NE2 HE21 sing N N 336 GLN NE2 HE22 sing N N 337 GLN OXT HXT sing N N 338 GLU N CA sing N N 339 GLU N H sing N N 340 GLU N H2 sing N N 341 GLU CA C sing N N 342 GLU CA CB sing N N 343 GLU CA HA sing N N 344 GLU C O doub N N 345 GLU C OXT sing N N 346 GLU CB CG sing N N 347 GLU CB HB2 sing N N 348 GLU CB HB3 sing N N 349 GLU CG CD sing N N 350 GLU CG HG2 sing N N 351 GLU CG HG3 sing N N 352 GLU CD OE1 doub N N 353 GLU CD OE2 sing N N 354 GLU OE2 HE2 sing N N 355 GLU OXT HXT sing N N 356 GLY N CA sing N N 357 GLY N H sing N N 358 GLY N H2 sing N N 359 GLY CA C sing N N 360 GLY CA HA2 sing N N 361 GLY CA HA3 sing N N 362 GLY C O doub N N 363 GLY C OXT sing N N 364 GLY OXT HXT sing N N 365 HIS N CA sing N N 366 HIS N H sing N N 367 HIS N H2 sing N N 368 HIS CA C sing N N 369 HIS CA CB sing N N 370 HIS CA HA sing N N 371 HIS C O doub N N 372 HIS C OXT sing N N 373 HIS CB CG sing N N 374 HIS CB HB2 sing N N 375 HIS CB HB3 sing N N 376 HIS CG ND1 sing Y N 377 HIS CG CD2 doub Y N 378 HIS ND1 CE1 doub Y N 379 HIS ND1 HD1 sing N N 380 HIS CD2 NE2 sing Y N 381 HIS CD2 HD2 sing N N 382 HIS CE1 NE2 sing Y N 383 HIS CE1 HE1 sing N N 384 HIS NE2 HE2 sing N N 385 HIS OXT HXT sing N N 386 HOH O H1 sing N N 387 HOH O H2 sing N N 388 ILE N CA sing N N 389 ILE N H sing N N 390 ILE N H2 sing N N 391 ILE CA C sing N N 392 ILE CA CB sing N N 393 ILE CA HA sing N N 394 ILE C O doub N N 395 ILE C OXT sing N N 396 ILE CB CG1 sing N N 397 ILE CB CG2 sing N N 398 ILE CB HB sing N N 399 ILE CG1 CD1 sing N N 400 ILE CG1 HG12 sing N N 401 ILE CG1 HG13 sing N N 402 ILE CG2 HG21 sing N N 403 ILE CG2 HG22 sing N N 404 ILE CG2 HG23 sing N N 405 ILE CD1 HD11 sing N N 406 ILE CD1 HD12 sing N N 407 ILE CD1 HD13 sing N N 408 ILE OXT HXT sing N N 409 LEU N CA sing N N 410 LEU N H sing N N 411 LEU N H2 sing N N 412 LEU CA C sing N N 413 LEU CA CB sing N N 414 LEU CA HA sing N N 415 LEU C O doub N N 416 LEU C OXT sing N N 417 LEU CB CG sing N N 418 LEU CB HB2 sing N N 419 LEU CB HB3 sing N N 420 LEU CG CD1 sing N N 421 LEU CG CD2 sing N N 422 LEU CG HG sing N N 423 LEU CD1 HD11 sing N N 424 LEU CD1 HD12 sing N N 425 LEU CD1 HD13 sing N N 426 LEU CD2 HD21 sing N N 427 LEU CD2 HD22 sing N N 428 LEU CD2 HD23 sing N N 429 LEU OXT HXT sing N N 430 LYS N CA sing N N 431 LYS N H sing N N 432 LYS N H2 sing N N 433 LYS CA C sing N N 434 LYS CA CB sing N N 435 LYS CA HA sing N N 436 LYS C O doub N N 437 LYS C OXT sing N N 438 LYS CB CG sing N N 439 LYS CB HB2 sing N N 440 LYS CB HB3 sing N N 441 LYS CG CD sing N N 442 LYS CG HG2 sing N N 443 LYS CG HG3 sing N N 444 LYS CD CE sing N N 445 LYS CD HD2 sing N N 446 LYS CD HD3 sing N N 447 LYS CE NZ sing N N 448 LYS CE HE2 sing N N 449 LYS CE HE3 sing N N 450 LYS NZ HZ1 sing N N 451 LYS NZ HZ2 sing N N 452 LYS NZ HZ3 sing N N 453 LYS OXT HXT sing N N 454 MET N CA sing N N 455 MET N H sing N N 456 MET N H2 sing N N 457 MET CA C sing N N 458 MET CA CB sing N N 459 MET CA HA sing N N 460 MET C O doub N N 461 MET C OXT sing N N 462 MET CB CG sing N N 463 MET CB HB2 sing N N 464 MET CB HB3 sing N N 465 MET CG SD sing N N 466 MET CG HG2 sing N N 467 MET CG HG3 sing N N 468 MET SD CE sing N N 469 MET CE HE1 sing N N 470 MET CE HE2 sing N N 471 MET CE HE3 sing N N 472 MET OXT HXT sing N N 473 PHE N CA sing N N 474 PHE N H sing N N 475 PHE N H2 sing N N 476 PHE CA C sing N N 477 PHE CA CB sing N N 478 PHE CA HA sing N N 479 PHE C O doub N N 480 PHE C OXT sing N N 481 PHE CB CG sing N N 482 PHE CB HB2 sing N N 483 PHE CB HB3 sing N N 484 PHE CG CD1 doub Y N 485 PHE CG CD2 sing Y N 486 PHE CD1 CE1 sing Y N 487 PHE CD1 HD1 sing N N 488 PHE CD2 CE2 doub Y N 489 PHE CD2 HD2 sing N N 490 PHE CE1 CZ doub Y N 491 PHE CE1 HE1 sing N N 492 PHE CE2 CZ sing Y N 493 PHE CE2 HE2 sing N N 494 PHE CZ HZ sing N N 495 PHE OXT HXT sing N N 496 PO4 P O1 doub N N 497 PO4 P O2 sing N N 498 PO4 P O3 sing N N 499 PO4 P O4 sing N N 500 PRO N CA sing N N 501 PRO N CD sing N N 502 PRO N H sing N N 503 PRO CA C sing N N 504 PRO CA CB sing N N 505 PRO CA HA sing N N 506 PRO C O doub N N 507 PRO C OXT sing N N 508 PRO CB CG sing N N 509 PRO CB HB2 sing N N 510 PRO CB HB3 sing N N 511 PRO CG CD sing N N 512 PRO CG HG2 sing N N 513 PRO CG HG3 sing N N 514 PRO CD HD2 sing N N 515 PRO CD HD3 sing N N 516 PRO OXT HXT sing N N 517 SER N CA sing N N 518 SER N H sing N N 519 SER N H2 sing N N 520 SER CA C sing N N 521 SER CA CB sing N N 522 SER CA HA sing N N 523 SER C O doub N N 524 SER C OXT sing N N 525 SER CB OG sing N N 526 SER CB HB2 sing N N 527 SER CB HB3 sing N N 528 SER OG HG sing N N 529 SER OXT HXT sing N N 530 THR N CA sing N N 531 THR N H sing N N 532 THR N H2 sing N N 533 THR CA C sing N N 534 THR CA CB sing N N 535 THR CA HA sing N N 536 THR C O doub N N 537 THR C OXT sing N N 538 THR CB OG1 sing N N 539 THR CB CG2 sing N N 540 THR CB HB sing N N 541 THR OG1 HG1 sing N N 542 THR CG2 HG21 sing N N 543 THR CG2 HG22 sing N N 544 THR CG2 HG23 sing N N 545 THR OXT HXT sing N N 546 TYR N CA sing N N 547 TYR N H sing N N 548 TYR N H2 sing N N 549 TYR CA C sing N N 550 TYR CA CB sing N N 551 TYR CA HA sing N N 552 TYR C O doub N N 553 TYR C OXT sing N N 554 TYR CB CG sing N N 555 TYR CB HB2 sing N N 556 TYR CB HB3 sing N N 557 TYR CG CD1 doub Y N 558 TYR CG CD2 sing Y N 559 TYR CD1 CE1 sing Y N 560 TYR CD1 HD1 sing N N 561 TYR CD2 CE2 doub Y N 562 TYR CD2 HD2 sing N N 563 TYR CE1 CZ doub Y N 564 TYR CE1 HE1 sing N N 565 TYR CE2 CZ sing Y N 566 TYR CE2 HE2 sing N N 567 TYR CZ OH sing N N 568 TYR OH HH sing N N 569 TYR OXT HXT sing N N 570 VAL N CA sing N N 571 VAL N H sing N N 572 VAL N H2 sing N N 573 VAL CA C sing N N 574 VAL CA CB sing N N 575 VAL CA HA sing N N 576 VAL C O doub N N 577 VAL C OXT sing N N 578 VAL CB CG1 sing N N 579 VAL CB CG2 sing N N 580 VAL CB HB sing N N 581 VAL CG1 HG11 sing N N 582 VAL CG1 HG12 sing N N 583 VAL CG1 HG13 sing N N 584 VAL CG2 HG21 sing N N 585 VAL CG2 HG22 sing N N 586 VAL CG2 HG23 sing N N 587 VAL OXT HXT sing N N 588 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9NKD 'double helix' 9NKD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 17 1_555 -0.088 -0.163 0.083 8.372 -1.802 -10.025 1 P_DG1:DC14_T P 1 ? T 14 ? 19 1 1 B DA 2 1_555 C DT 16 1_555 -0.018 -0.117 0.567 17.550 -14.130 -1.465 2 P_DA2:DT13_T P 2 ? T 13 ? 20 1 1 B DG 3 1_555 C DC 15 1_555 0.131 -0.431 0.874 5.550 -10.343 -7.115 3 P_DG3:DC12_T P 3 ? T 12 ? 19 1 1 B DC 4 1_555 C DG 14 1_555 0.419 -0.356 0.693 -13.685 -3.971 1.332 4 P_DC4:DG11_T P 4 ? T 11 ? 19 1 1 B DG 5 1_555 C DC 13 1_555 0.093 0.112 -0.105 0.919 0.420 3.098 5 P_DG5:DC10_T P 5 ? T 10 ? 19 1 1 B DA 6 1_555 C DT 12 1_555 0.205 -0.105 0.647 4.004 -4.775 11.267 6 P_DA6:DT9_T P 6 ? T 9 ? 20 1 1 B DT 7 1_555 C DA 11 1_555 0.337 -0.237 0.836 3.160 5.743 6.265 7 P_DT7:DA8_T P 7 ? T 8 ? 20 1 1 B DA 8 1_555 C DT 10 1_555 -0.272 -0.378 -0.119 1.703 -3.448 -2.455 8 P_DA8:DT7_T P 8 ? T 7 ? 20 1 1 B DC 9 1_555 C DG 9 1_555 0.429 -0.114 -0.198 12.749 -19.055 4.788 9 P_DC9:DG6_T P 9 ? T 6 ? 19 1 1 B DC 10 1_555 C 8OG 8 1_555 0.246 -0.369 0.349 -6.289 4.807 -4.108 10 P_DC10:8OG5_T P 10 ? T 5 ? 19 1 1 B DG 11 1_555 C DC 7 1_555 -0.299 -0.370 -0.214 0.019 -4.997 0.022 11 P_DG11:DC4_T P 11 ? T 4 ? 19 1 1 B DT 12 1_555 C DA 6 1_555 -0.539 -0.065 -0.446 13.393 1.782 7.088 12 P_DT12:DA3_T P 12 ? T 3 ? 20 1 1 B DG 13 1_555 C DC 5 1_555 -0.472 -0.243 -0.106 -4.381 -6.610 5.983 13 P_DG13:DC2_T P 13 ? T 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 17 1_555 B DA 2 1_555 C DT 16 1_555 0.819 -0.752 3.101 -0.408 1.692 27.613 -1.958 -1.806 3.039 3.541 0.853 27.667 1 PP_DG1DA2:DT13DC14_TT P 1 ? T 14 ? P 2 ? T 13 ? 1 B DA 2 1_555 C DT 16 1_555 B DG 3 1_555 C DC 15 1_555 -1.136 -0.770 3.545 -7.957 2.070 40.284 -1.348 0.658 3.653 2.968 11.410 41.080 2 PP_DA2DG3:DC12DT13_TT P 2 ? T 13 ? P 3 ? T 12 ? 1 B DG 3 1_555 C DC 15 1_555 B DC 4 1_555 C DG 14 1_555 -0.008 -0.788 3.713 1.245 0.290 37.905 -1.254 0.194 3.705 0.446 -1.917 37.926 3 PP_DG3DC4:DG11DC12_TT P 3 ? T 12 ? P 4 ? T 11 ? 1 B DC 4 1_555 C DG 14 1_555 B DG 5 1_555 C DC 13 1_555 -0.812 0.427 3.045 5.697 11.090 35.477 -0.690 1.958 2.886 17.545 -9.012 37.537 4 PP_DC4DG5:DC10DG11_TT P 4 ? T 11 ? P 5 ? T 10 ? 1 B DG 5 1_555 C DC 13 1_555 B DA 6 1_555 C DT 12 1_555 -0.160 -0.342 3.048 -5.349 3.761 36.604 -1.004 -0.412 2.992 5.930 8.434 37.164 5 PP_DG5DA6:DT9DC10_TT P 5 ? T 10 ? P 6 ? T 9 ? 1 B DA 6 1_555 C DT 12 1_555 B DT 7 1_555 C DA 11 1_555 0.048 -0.849 3.457 -4.723 -1.638 28.614 -1.311 -1.199 3.447 -3.283 9.465 29.038 6 PP_DA6DT7:DA8DT9_TT P 6 ? T 9 ? P 7 ? T 8 ? 1 B DT 7 1_555 C DA 11 1_555 B DA 8 1_555 C DT 10 1_555 -0.113 -0.486 3.237 7.980 1.473 38.244 -0.901 1.115 3.132 2.217 -12.015 39.064 7 PP_DT7DA8:DT7DA8_TT P 7 ? T 8 ? P 8 ? T 7 ? 1 B DA 8 1_555 C DT 10 1_555 B DC 9 1_555 C DG 9 1_555 0.136 -0.365 3.149 1.626 -0.116 37.079 -0.559 -0.004 3.153 -0.182 -2.555 37.113 8 PP_DA8DC9:DG6DT7_TT P 8 ? T 7 ? P 9 ? T 6 ? 1 B DC 9 1_555 C DG 9 1_555 B DC 10 1_555 C 8OG 8 1_555 0.247 -0.242 3.808 -2.817 5.507 37.562 -1.180 -0.792 3.710 8.481 4.338 38.050 9 PP_DC9DC10:8OG5DG6_TT P 9 ? T 6 ? P 10 ? T 5 ? 1 B DC 10 1_555 C 8OG 8 1_555 B DG 11 1_555 C DC 7 1_555 -0.525 -0.708 3.098 0.180 7.820 25.158 -3.474 1.196 2.752 17.425 -0.401 26.327 10 PP_DC10DG11:DC48OG5_TT P 10 ? T 5 ? P 11 ? T 4 ? 1 B DG 11 1_555 C DC 7 1_555 B DT 12 1_555 C DA 6 1_555 0.150 -0.677 3.076 -2.534 6.491 26.948 -2.833 -0.868 2.813 13.640 5.325 27.818 11 PP_DG11DT12:DA3DC4_TT P 11 ? T 4 ? P 12 ? T 3 ? 1 B DT 12 1_555 C DA 6 1_555 B DG 13 1_555 C DC 5 1_555 -0.328 -0.732 3.749 -3.283 3.356 30.310 -2.138 -0.116 3.663 6.370 6.231 30.663 12 PP_DT12DG13:DC2DA3_TT P 12 ? T 3 ? P 13 ? T 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM08057308 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R15GM155805 2 'National Science Foundation (NSF, United States)' 'United States' NSF2105167 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3QZ7 _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 21 21 2' _space_group.name_Hall 'P 2 2ab' _space_group.IT_number 18 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9NKD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.010103 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009761 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019243 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #