data_9NKM # _entry.id 9NKM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9NKM pdb_00009nkm 10.2210/pdb9nkm/pdb WWPDB D_1000293570 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-02-04 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9NKM _pdbx_database_status.recvd_initial_deposition_date 2025-03-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email kcgarcia@stanford.edu _pdbx_contact_author.name_first K _pdbx_contact_author.name_last Garcia _pdbx_contact_author.name_mi C _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9273-0278 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jude, K.M.' 1 0000-0002-3675-5136 'Yang, A.' 2 0000-0002-8704-0288 'Garcia, K.C.' 3 0000-0001-9273-0278 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural ontogeny of protein-protein interactions' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.adx6931 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, A.' 1 ? primary 'Jiang, H.' 2 ? primary 'Jude, K.M.' 3 ? primary 'Akpinaroglu, D.' 4 ? primary 'Allenspach, S.' 5 ? primary 'Li, A.J.' 6 ? primary 'Bowden, J.' 7 ? primary 'Perez, C.P.' 8 ? primary 'Liu, L.' 9 ? primary 'Huang, P.S.' 10 ? primary 'Kortemme, T.' 11 ? primary 'Listgarten, J.' 12 ? primary 'Garcia, K.C.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'A4 affibody' 7698.622 2 ? ? ? ? 2 polymer man 'B1 affibody' 7885.968 2 ? ? ? ? 3 water nat water 18.015 5 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MAVDNKFNAIQWVAFFLILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAAALNAAQAPKLEHHHHHH MAVDNKFNAIQWVAFFLILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAAALNAAQAPKLEHHHHHH A,C ? 2 'polypeptide(L)' no yes 'MAVDNKFNKEQQNAFYEILHLPNLNEIQRNVMIQILKDDPSQSALMLAVA(MLZ)IANDAQAPKLEHHHHHH' MAVDNKFNKEQQNAFYEILHLPNLNEIQRNVMIQILKDDPSQSALMLAVAKIANDAQAPKLEHHHHHH B,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 VAL n 1 4 ASP n 1 5 ASN n 1 6 LYS n 1 7 PHE n 1 8 ASN n 1 9 ALA n 1 10 ILE n 1 11 GLN n 1 12 TRP n 1 13 VAL n 1 14 ALA n 1 15 PHE n 1 16 PHE n 1 17 LEU n 1 18 ILE n 1 19 LEU n 1 20 HIS n 1 21 LEU n 1 22 PRO n 1 23 ASN n 1 24 LEU n 1 25 ASN n 1 26 GLU n 1 27 GLU n 1 28 GLN n 1 29 ARG n 1 30 ASN n 1 31 ALA n 1 32 PHE n 1 33 ILE n 1 34 GLN n 1 35 SER n 1 36 LEU n 1 37 LYS n 1 38 ASP n 1 39 ASP n 1 40 PRO n 1 41 SER n 1 42 GLN n 1 43 SER n 1 44 ALA n 1 45 ASN n 1 46 LEU n 1 47 LEU n 1 48 ALA n 1 49 GLU n 1 50 ALA n 1 51 ALA n 1 52 ALA n 1 53 LEU n 1 54 ASN n 1 55 ALA n 1 56 ALA n 1 57 GLN n 1 58 ALA n 1 59 PRO n 1 60 LYS n 1 61 LEU n 1 62 GLU n 1 63 HIS n 1 64 HIS n 1 65 HIS n 1 66 HIS n 1 67 HIS n 1 68 HIS n 2 1 MET n 2 2 ALA n 2 3 VAL n 2 4 ASP n 2 5 ASN n 2 6 LYS n 2 7 PHE n 2 8 ASN n 2 9 LYS n 2 10 GLU n 2 11 GLN n 2 12 GLN n 2 13 ASN n 2 14 ALA n 2 15 PHE n 2 16 TYR n 2 17 GLU n 2 18 ILE n 2 19 LEU n 2 20 HIS n 2 21 LEU n 2 22 PRO n 2 23 ASN n 2 24 LEU n 2 25 ASN n 2 26 GLU n 2 27 ILE n 2 28 GLN n 2 29 ARG n 2 30 ASN n 2 31 VAL n 2 32 MET n 2 33 ILE n 2 34 GLN n 2 35 ILE n 2 36 LEU n 2 37 LYS n 2 38 ASP n 2 39 ASP n 2 40 PRO n 2 41 SER n 2 42 GLN n 2 43 SER n 2 44 ALA n 2 45 LEU n 2 46 MET n 2 47 LEU n 2 48 ALA n 2 49 VAL n 2 50 ALA n 2 51 MLZ n 2 52 ILE n 2 53 ALA n 2 54 ASN n 2 55 ASP n 2 56 ALA n 2 57 GLN n 2 58 ALA n 2 59 PRO n 2 60 LYS n 2 61 LEU n 2 62 GLU n 2 63 HIS n 2 64 HIS n 2 65 HIS n 2 66 HIS n 2 67 HIS n 2 68 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 68 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 68 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLZ 'L-peptide linking' n N-METHYL-LYSINE ? 'C7 H16 N2 O2' 160.214 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -1 ? ? ? A . n A 1 2 ALA 2 0 ? ? ? A . n A 1 3 VAL 3 1 ? ? ? A . n A 1 4 ASP 4 2 ? ? ? A . n A 1 5 ASN 5 3 3 ASN ASN A . n A 1 6 LYS 6 4 4 LYS LYS A . n A 1 7 PHE 7 5 5 PHE PHE A . n A 1 8 ASN 8 6 6 ASN ASN A . n A 1 9 ALA 9 7 7 ALA ALA A . n A 1 10 ILE 10 8 8 ILE ILE A . n A 1 11 GLN 11 9 9 GLN GLN A . n A 1 12 TRP 12 10 10 TRP TRP A . n A 1 13 VAL 13 11 11 VAL VAL A . n A 1 14 ALA 14 12 12 ALA ALA A . n A 1 15 PHE 15 13 13 PHE PHE A . n A 1 16 PHE 16 14 14 PHE PHE A . n A 1 17 LEU 17 15 15 LEU LEU A . n A 1 18 ILE 18 16 16 ILE ILE A . n A 1 19 LEU 19 17 17 LEU LEU A . n A 1 20 HIS 20 18 18 HIS HIS A . n A 1 21 LEU 21 19 19 LEU LEU A . n A 1 22 PRO 22 20 20 PRO PRO A . n A 1 23 ASN 23 21 21 ASN ASN A . n A 1 24 LEU 24 22 22 LEU LEU A . n A 1 25 ASN 25 23 23 ASN ASN A . n A 1 26 GLU 26 24 24 GLU GLU A . n A 1 27 GLU 27 25 25 GLU GLU A . n A 1 28 GLN 28 26 26 GLN GLN A . n A 1 29 ARG 29 27 27 ARG ARG A . n A 1 30 ASN 30 28 28 ASN ASN A . n A 1 31 ALA 31 29 29 ALA ALA A . n A 1 32 PHE 32 30 30 PHE PHE A . n A 1 33 ILE 33 31 31 ILE ILE A . n A 1 34 GLN 34 32 32 GLN GLN A . n A 1 35 SER 35 33 33 SER SER A . n A 1 36 LEU 36 34 34 LEU LEU A . n A 1 37 LYS 37 35 35 LYS LYS A . n A 1 38 ASP 38 36 36 ASP ASP A . n A 1 39 ASP 39 37 37 ASP ASP A . n A 1 40 PRO 40 38 38 PRO PRO A . n A 1 41 SER 41 39 39 SER SER A . n A 1 42 GLN 42 40 40 GLN GLN A . n A 1 43 SER 43 41 41 SER SER A . n A 1 44 ALA 44 42 42 ALA ALA A . n A 1 45 ASN 45 43 43 ASN ASN A . n A 1 46 LEU 46 44 44 LEU LEU A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 ALA 48 46 46 ALA ALA A . n A 1 49 GLU 49 47 47 GLU GLU A . n A 1 50 ALA 50 48 48 ALA ALA A . n A 1 51 ALA 51 49 49 ALA ALA A . n A 1 52 ALA 52 50 50 ALA ALA A . n A 1 53 LEU 53 51 51 LEU LEU A . n A 1 54 ASN 54 52 52 ASN ASN A . n A 1 55 ALA 55 53 53 ALA ALA A . n A 1 56 ALA 56 54 54 ALA ALA A . n A 1 57 GLN 57 55 55 GLN GLN A . n A 1 58 ALA 58 56 56 ALA ALA A . n A 1 59 PRO 59 57 57 PRO PRO A . n A 1 60 LYS 60 58 ? ? ? A . n A 1 61 LEU 61 59 ? ? ? A . n A 1 62 GLU 62 60 ? ? ? A . n A 1 63 HIS 63 61 ? ? ? A . n A 1 64 HIS 64 62 ? ? ? A . n A 1 65 HIS 65 63 ? ? ? A . n A 1 66 HIS 66 64 ? ? ? A . n A 1 67 HIS 67 65 ? ? ? A . n A 1 68 HIS 68 66 ? ? ? A . n B 2 1 MET 1 -1 ? ? ? B . n B 2 2 ALA 2 0 ? ? ? B . n B 2 3 VAL 3 1 ? ? ? B . n B 2 4 ASP 4 2 ? ? ? B . n B 2 5 ASN 5 3 ? ? ? B . n B 2 6 LYS 6 4 ? ? ? B . n B 2 7 PHE 7 5 5 PHE PHE B . n B 2 8 ASN 8 6 6 ASN ASN B . n B 2 9 LYS 9 7 7 LYS LYS B . n B 2 10 GLU 10 8 8 GLU GLU B . n B 2 11 GLN 11 9 9 GLN GLN B . n B 2 12 GLN 12 10 10 GLN GLN B . n B 2 13 ASN 13 11 11 ASN ASN B . n B 2 14 ALA 14 12 12 ALA ALA B . n B 2 15 PHE 15 13 13 PHE PHE B . n B 2 16 TYR 16 14 14 TYR TYR B . n B 2 17 GLU 17 15 15 GLU GLU B . n B 2 18 ILE 18 16 16 ILE ILE B . n B 2 19 LEU 19 17 17 LEU LEU B . n B 2 20 HIS 20 18 18 HIS HIS B . n B 2 21 LEU 21 19 19 LEU LEU B . n B 2 22 PRO 22 20 20 PRO PRO B . n B 2 23 ASN 23 21 21 ASN ASN B . n B 2 24 LEU 24 22 22 LEU LEU B . n B 2 25 ASN 25 23 23 ASN ASN B . n B 2 26 GLU 26 24 24 GLU GLU B . n B 2 27 ILE 27 25 25 ILE ILE B . n B 2 28 GLN 28 26 26 GLN GLN B . n B 2 29 ARG 29 27 27 ARG ARG B . n B 2 30 ASN 30 28 28 ASN ASN B . n B 2 31 VAL 31 29 29 VAL VAL B . n B 2 32 MET 32 30 30 MET MET B . n B 2 33 ILE 33 31 31 ILE ILE B . n B 2 34 GLN 34 32 32 GLN GLN B . n B 2 35 ILE 35 33 33 ILE ILE B . n B 2 36 LEU 36 34 34 LEU LEU B . n B 2 37 LYS 37 35 35 LYS LYS B . n B 2 38 ASP 38 36 36 ASP ASP B . n B 2 39 ASP 39 37 37 ASP ASP B . n B 2 40 PRO 40 38 38 PRO PRO B . n B 2 41 SER 41 39 39 SER SER B . n B 2 42 GLN 42 40 40 GLN GLN B . n B 2 43 SER 43 41 41 SER SER B . n B 2 44 ALA 44 42 42 ALA ALA B . n B 2 45 LEU 45 43 43 LEU LEU B . n B 2 46 MET 46 44 44 MET MET B . n B 2 47 LEU 47 45 45 LEU LEU B . n B 2 48 ALA 48 46 46 ALA ALA B . n B 2 49 VAL 49 47 47 VAL VAL B . n B 2 50 ALA 50 48 48 ALA ALA B . n B 2 51 MLZ 51 49 49 MLZ MLZ B . n B 2 52 ILE 52 50 50 ILE ILE B . n B 2 53 ALA 53 51 51 ALA ALA B . n B 2 54 ASN 54 52 52 ASN ASN B . n B 2 55 ASP 55 53 53 ASP ASP B . n B 2 56 ALA 56 54 54 ALA ALA B . n B 2 57 GLN 57 55 55 GLN GLN B . n B 2 58 ALA 58 56 56 ALA ALA B . n B 2 59 PRO 59 57 57 PRO PRO B . n B 2 60 LYS 60 58 ? ? ? B . n B 2 61 LEU 61 59 ? ? ? B . n B 2 62 GLU 62 60 ? ? ? B . n B 2 63 HIS 63 61 ? ? ? B . n B 2 64 HIS 64 62 ? ? ? B . n B 2 65 HIS 65 63 ? ? ? B . n B 2 66 HIS 66 64 ? ? ? B . n B 2 67 HIS 67 65 ? ? ? B . n B 2 68 HIS 68 66 ? ? ? B . n C 1 1 MET 1 -1 ? ? ? C . n C 1 2 ALA 2 0 ? ? ? C . n C 1 3 VAL 3 1 ? ? ? C . n C 1 4 ASP 4 2 ? ? ? C . n C 1 5 ASN 5 3 3 ASN ASN C . n C 1 6 LYS 6 4 4 LYS LYS C . n C 1 7 PHE 7 5 5 PHE PHE C . n C 1 8 ASN 8 6 6 ASN ASN C . n C 1 9 ALA 9 7 7 ALA ALA C . n C 1 10 ILE 10 8 8 ILE ILE C . n C 1 11 GLN 11 9 9 GLN GLN C . n C 1 12 TRP 12 10 10 TRP TRP C . n C 1 13 VAL 13 11 11 VAL VAL C . n C 1 14 ALA 14 12 12 ALA ALA C . n C 1 15 PHE 15 13 13 PHE PHE C . n C 1 16 PHE 16 14 14 PHE PHE C . n C 1 17 LEU 17 15 15 LEU LEU C . n C 1 18 ILE 18 16 16 ILE ILE C . n C 1 19 LEU 19 17 17 LEU LEU C . n C 1 20 HIS 20 18 18 HIS HIS C . n C 1 21 LEU 21 19 19 LEU LEU C . n C 1 22 PRO 22 20 20 PRO PRO C . n C 1 23 ASN 23 21 21 ASN ASN C . n C 1 24 LEU 24 22 22 LEU LEU C . n C 1 25 ASN 25 23 23 ASN ASN C . n C 1 26 GLU 26 24 24 GLU GLU C . n C 1 27 GLU 27 25 25 GLU GLU C . n C 1 28 GLN 28 26 26 GLN GLN C . n C 1 29 ARG 29 27 27 ARG ARG C . n C 1 30 ASN 30 28 28 ASN ASN C . n C 1 31 ALA 31 29 29 ALA ALA C . n C 1 32 PHE 32 30 30 PHE PHE C . n C 1 33 ILE 33 31 31 ILE ILE C . n C 1 34 GLN 34 32 32 GLN GLN C . n C 1 35 SER 35 33 33 SER SER C . n C 1 36 LEU 36 34 34 LEU LEU C . n C 1 37 LYS 37 35 35 LYS LYS C . n C 1 38 ASP 38 36 36 ASP ASP C . n C 1 39 ASP 39 37 37 ASP ASP C . n C 1 40 PRO 40 38 38 PRO PRO C . n C 1 41 SER 41 39 39 SER SER C . n C 1 42 GLN 42 40 40 GLN GLN C . n C 1 43 SER 43 41 41 SER SER C . n C 1 44 ALA 44 42 42 ALA ALA C . n C 1 45 ASN 45 43 43 ASN ASN C . n C 1 46 LEU 46 44 44 LEU LEU C . n C 1 47 LEU 47 45 45 LEU LEU C . n C 1 48 ALA 48 46 46 ALA ALA C . n C 1 49 GLU 49 47 47 GLU GLU C . n C 1 50 ALA 50 48 48 ALA ALA C . n C 1 51 ALA 51 49 49 ALA ALA C . n C 1 52 ALA 52 50 50 ALA ALA C . n C 1 53 LEU 53 51 51 LEU LEU C . n C 1 54 ASN 54 52 52 ASN ASN C . n C 1 55 ALA 55 53 53 ALA ALA C . n C 1 56 ALA 56 54 54 ALA ALA C . n C 1 57 GLN 57 55 55 GLN GLN C . n C 1 58 ALA 58 56 56 ALA ALA C . n C 1 59 PRO 59 57 57 PRO PRO C . n C 1 60 LYS 60 58 ? ? ? C . n C 1 61 LEU 61 59 ? ? ? C . n C 1 62 GLU 62 60 ? ? ? C . n C 1 63 HIS 63 61 ? ? ? C . n C 1 64 HIS 64 62 ? ? ? C . n C 1 65 HIS 65 63 ? ? ? C . n C 1 66 HIS 66 64 ? ? ? C . n C 1 67 HIS 67 65 ? ? ? C . n C 1 68 HIS 68 66 ? ? ? C . n D 2 1 MET 1 -1 ? ? ? D . n D 2 2 ALA 2 0 ? ? ? D . n D 2 3 VAL 3 1 ? ? ? D . n D 2 4 ASP 4 2 ? ? ? D . n D 2 5 ASN 5 3 ? ? ? D . n D 2 6 LYS 6 4 ? ? ? D . n D 2 7 PHE 7 5 ? ? ? D . n D 2 8 ASN 8 6 6 ASN ASN D . n D 2 9 LYS 9 7 7 LYS LYS D . n D 2 10 GLU 10 8 8 GLU GLU D . n D 2 11 GLN 11 9 9 GLN GLN D . n D 2 12 GLN 12 10 10 GLN GLN D . n D 2 13 ASN 13 11 11 ASN ASN D . n D 2 14 ALA 14 12 12 ALA ALA D . n D 2 15 PHE 15 13 13 PHE PHE D . n D 2 16 TYR 16 14 14 TYR TYR D . n D 2 17 GLU 17 15 15 GLU GLU D . n D 2 18 ILE 18 16 16 ILE ILE D . n D 2 19 LEU 19 17 17 LEU LEU D . n D 2 20 HIS 20 18 18 HIS HIS D . n D 2 21 LEU 21 19 19 LEU LEU D . n D 2 22 PRO 22 20 20 PRO PRO D . n D 2 23 ASN 23 21 21 ASN ASN D . n D 2 24 LEU 24 22 22 LEU LEU D . n D 2 25 ASN 25 23 23 ASN ASN D . n D 2 26 GLU 26 24 24 GLU GLU D . n D 2 27 ILE 27 25 25 ILE ILE D . n D 2 28 GLN 28 26 26 GLN GLN D . n D 2 29 ARG 29 27 27 ARG ARG D . n D 2 30 ASN 30 28 28 ASN ASN D . n D 2 31 VAL 31 29 29 VAL VAL D . n D 2 32 MET 32 30 30 MET MET D . n D 2 33 ILE 33 31 31 ILE ILE D . n D 2 34 GLN 34 32 32 GLN GLN D . n D 2 35 ILE 35 33 33 ILE ILE D . n D 2 36 LEU 36 34 34 LEU LEU D . n D 2 37 LYS 37 35 35 LYS LYS D . n D 2 38 ASP 38 36 36 ASP ASP D . n D 2 39 ASP 39 37 37 ASP ASP D . n D 2 40 PRO 40 38 38 PRO PRO D . n D 2 41 SER 41 39 39 SER SER D . n D 2 42 GLN 42 40 40 GLN GLN D . n D 2 43 SER 43 41 41 SER SER D . n D 2 44 ALA 44 42 42 ALA ALA D . n D 2 45 LEU 45 43 43 LEU LEU D . n D 2 46 MET 46 44 44 MET MET D . n D 2 47 LEU 47 45 45 LEU LEU D . n D 2 48 ALA 48 46 46 ALA ALA D . n D 2 49 VAL 49 47 47 VAL VAL D . n D 2 50 ALA 50 48 48 ALA ALA D . n D 2 51 MLZ 51 49 49 MLZ MLZ D . n D 2 52 ILE 52 50 50 ILE ILE D . n D 2 53 ALA 53 51 51 ALA ALA D . n D 2 54 ASN 54 52 52 ASN ASN D . n D 2 55 ASP 55 53 53 ASP ASP D . n D 2 56 ALA 56 54 54 ALA ALA D . n D 2 57 GLN 57 55 55 GLN GLN D . n D 2 58 ALA 58 56 56 ALA ALA D . n D 2 59 PRO 59 57 57 PRO PRO D . n D 2 60 LYS 60 58 ? ? ? D . n D 2 61 LEU 61 59 ? ? ? D . n D 2 62 GLU 62 60 ? ? ? D . n D 2 63 HIS 63 61 ? ? ? D . n D 2 64 HIS 64 62 ? ? ? D . n D 2 65 HIS 65 63 ? ? ? D . n D 2 66 HIS 66 64 ? ? ? D . n D 2 67 HIS 67 65 ? ? ? D . n D 2 68 HIS 68 66 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 101 1 HOH HOH B . E 3 HOH 2 102 5 HOH HOH B . F 3 HOH 1 101 4 HOH HOH C . G 3 HOH 1 101 2 HOH HOH D . G 3 HOH 2 102 3 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 14 ? CG ? A PHE 16 CG 2 1 Y 1 A PHE 14 ? CD1 ? A PHE 16 CD1 3 1 Y 1 A PHE 14 ? CD2 ? A PHE 16 CD2 4 1 Y 1 A PHE 14 ? CE1 ? A PHE 16 CE1 5 1 Y 1 A PHE 14 ? CE2 ? A PHE 16 CE2 6 1 Y 1 A PHE 14 ? CZ ? A PHE 16 CZ 7 1 Y 1 A GLU 24 ? CG ? A GLU 26 CG 8 1 Y 1 A GLU 24 ? CD ? A GLU 26 CD 9 1 Y 1 A GLU 24 ? OE1 ? A GLU 26 OE1 10 1 Y 1 A GLU 24 ? OE2 ? A GLU 26 OE2 11 1 Y 1 A ASP 36 ? CG ? A ASP 38 CG 12 1 Y 1 A ASP 36 ? OD1 ? A ASP 38 OD1 13 1 Y 1 A ASP 36 ? OD2 ? A ASP 38 OD2 14 1 Y 1 A GLU 47 ? CG ? A GLU 49 CG 15 1 Y 1 A GLU 47 ? CD ? A GLU 49 CD 16 1 Y 1 A GLU 47 ? OE1 ? A GLU 49 OE1 17 1 Y 1 A GLU 47 ? OE2 ? A GLU 49 OE2 18 1 Y 1 B GLU 8 ? CG ? B GLU 10 CG 19 1 Y 1 B GLU 8 ? CD ? B GLU 10 CD 20 1 Y 1 B GLU 8 ? OE1 ? B GLU 10 OE1 21 1 Y 1 B GLU 8 ? OE2 ? B GLU 10 OE2 22 1 Y 1 B GLU 15 ? CG ? B GLU 17 CG 23 1 Y 1 B GLU 15 ? CD ? B GLU 17 CD 24 1 Y 1 B GLU 15 ? OE1 ? B GLU 17 OE1 25 1 Y 1 B GLU 15 ? OE2 ? B GLU 17 OE2 26 1 Y 1 C PHE 14 ? CG ? C PHE 16 CG 27 1 Y 1 C PHE 14 ? CD1 ? C PHE 16 CD1 28 1 Y 1 C PHE 14 ? CD2 ? C PHE 16 CD2 29 1 Y 1 C PHE 14 ? CE1 ? C PHE 16 CE1 30 1 Y 1 C PHE 14 ? CE2 ? C PHE 16 CE2 31 1 Y 1 C PHE 14 ? CZ ? C PHE 16 CZ 32 1 Y 1 D LYS 7 ? CG ? D LYS 9 CG 33 1 Y 1 D LYS 7 ? CD ? D LYS 9 CD 34 1 Y 1 D LYS 7 ? CE ? D LYS 9 CE 35 1 Y 1 D LYS 7 ? NZ ? D LYS 9 NZ 36 1 Y 1 D ASN 11 ? CG ? D ASN 13 CG 37 1 Y 1 D ASN 11 ? OD1 ? D ASN 13 OD1 38 1 Y 1 D ASN 11 ? ND2 ? D ASN 13 ND2 39 1 Y 1 D PHE 13 ? CG ? D PHE 15 CG 40 1 Y 1 D PHE 13 ? CD1 ? D PHE 15 CD1 41 1 Y 1 D PHE 13 ? CD2 ? D PHE 15 CD2 42 1 Y 1 D PHE 13 ? CE1 ? D PHE 15 CE1 43 1 Y 1 D PHE 13 ? CE2 ? D PHE 15 CE2 44 1 Y 1 D PHE 13 ? CZ ? D PHE 15 CZ 45 1 Y 1 D GLU 15 ? CG ? D GLU 17 CG 46 1 Y 1 D GLU 15 ? CD ? D GLU 17 CD 47 1 Y 1 D GLU 15 ? OE1 ? D GLU 17 OE1 48 1 Y 1 D GLU 15 ? OE2 ? D GLU 17 OE2 49 1 Y 1 D GLN 32 ? CG ? D GLN 34 CG 50 1 Y 1 D GLN 32 ? CD ? D GLN 34 CD 51 1 Y 1 D GLN 32 ? OE1 ? D GLN 34 OE1 52 1 Y 1 D GLN 32 ? NE2 ? D GLN 34 NE2 53 1 Y 1 D MLZ 49 ? CM ? D MLZ 51 CM # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.2_5419 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9NKM _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.931 _cell.length_a_esd ? _cell.length_b 74.802 _cell.length_b_esd ? _cell.length_c 147.291 _cell.length_c_esd ? _cell.volume 439946.237 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9NKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9NKM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M bis-tris-propane pH 9.0, 30% PEG 6000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-10-26 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 59.41 _reflns.entry_id 9NKM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 36.25 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7909 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.31 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.99 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all .1148 _reflns.pdbx_Rpim_I_all .04479 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half .999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs .1054 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.66 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.75 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1284 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.128 _reflns_shell.pdbx_Rpim_I_all .4306 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half .9 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.041 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 90.07 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9NKM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 36.25 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7906 _refine.ls_number_reflns_R_free 777 _refine.ls_number_reflns_R_work 7129 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.32 _refine.ls_percent_reflns_R_free 9.83 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2334 _refine.ls_R_factor_R_free 0.2639 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2298 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 38.1314 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3827 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 36.25 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 1646 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1641 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0024 ? 1667 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.6398 ? 2270 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0397 ? 265 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0027 ? 306 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.7283 ? 605 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.ncs_model_details 1 'X-RAY DIFFRACTION' d_2 ens_1 0.365562164693 ? ? ? 'Torsion NCS' A A ? ? ? ? 2 'X-RAY DIFFRACTION' d_2 ens_2 1.16543595064 ? ? ? 'Torsion NCS' B B ? ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.50 2.66 . . 117 1166 99.30 . . . . 0.3887 . . . . . . . . . . . . . . . 0.4630 'X-RAY DIFFRACTION' 2.66 2.86 . . 134 1151 99.23 . . . . 0.3192 . . . . . . . . . . . . . . . 0.3429 'X-RAY DIFFRACTION' 2.86 3.15 . . 120 1163 98.92 . . . . 0.2511 . . . . . . . . . . . . . . . 0.3532 'X-RAY DIFFRACTION' 3.15 3.61 . . 131 1190 99.47 . . . . 0.2374 . . . . . . . . . . . . . . . 0.2980 'X-RAY DIFFRACTION' 3.61 4.54 . . 128 1203 99.70 . . . . 0.1938 . . . . . . . . . . . . . . . 0.2492 'X-RAY DIFFRACTION' 4.54 36.25 . . 147 1256 99.29 . . . . 0.2119 . . . . . . . . . . . . . . . 0.2135 # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given -0.893365023457 0.449328128739 0.00177977184771 0.449241002518 0.89309822402 0.0236237996147 0.00902532659822 0.0219042227861 -0.999719334866 -4.32199373136 0.529349145098 38.5546520296 ? 2 given -0.895240501904 0.444597075434 0.0296291117847 0.445164274184 0.895302130412 0.0162130894461 -0.0193187147516 0.0277044363756 -0.999429462976 -4.74512517863 0.629582051778 38.5064780976 ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and (resid 3 through 56 or (resid 57 and (name N or name CA or name C or name O or name CB or name CG or name CD )))) ; ens_1 d_2 ;(chain "C" and (resid 3 through 23 or (resid 24 and (name N or name CA or name C or name O or name CB )) or resid 25 through 35 or (resid 36 and (name N or name CA or name C or name O or name CB )) or resid 37 through 46 or (resid 47 through 50 and (name N or name CA or name C or name O or name CB )) or resid 51 through 57)) ; ens_2 d_1 ;(chain "B" and (resid 6 or (resid 7 through 8 and (name N or name CA or name C or name O or name CB )) or resid 9 through 10 or (resid 11 through 13 and (name N or name CA or name C or name O or name CB )) or resid 14 through 31 or (resid 32 and (name N or name CA or name C or name O or name CB )) or resid 33 through 48 or (resid 49 and (name N or name CA or name C or name O or name CB or name CG or name CD or name CE or name NZ )) or resid 50 through 57)) ; ens_2 d_2 ;(chain "D" and (resid 6 through 7 or (resid 8 and (name N or name CA or name C or name O or name CB )) or resid 9 through 57)) ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 A ASN 5 . A PRO 59 . A ASN 3 A PRO 57 ? ? ens_1 d_2 1 C ASN 5 . C PRO 59 . C ASN 3 C PRO 57 ? ? ens_2 d_1 1 B ASN 8 . B PRO 59 . B ASN 6 B PRO 57 ? ? ens_2 d_2 1 D ASN 8 . D PRO 59 . D ASN 6 D PRO 57 ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details ens_1 ? ens_2 ? # loop_ _struct_ncs_ens_gen.ens_id _struct_ncs_ens_gen.dom_id_1 _struct_ncs_ens_gen.dom_id_2 _struct_ncs_ens_gen.oper_id ens_1 d_2 d_1 1 ens_2 d_2 d_1 2 # _struct.entry_id 9NKM _struct.title 'Coevolved affibody pair A4B1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9NKM _struct_keywords.text 'coevolution, complex, affibody, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9NKM 9NKM ? 1 ? 1 2 PDB 9NKM 9NKM ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9NKM A 1 ? 68 ? 9NKM -1 ? 66 ? -1 66 2 2 9NKM B 1 ? 68 ? 9NKM -1 ? 66 ? -1 66 3 1 9NKM C 1 ? 68 ? 9NKM -1 ? 66 ? -1 66 4 2 9NKM D 1 ? 68 ? 9NKM -1 ? 66 ? -1 66 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E 2 1 C,D,F,G # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 2 'gel filtration' ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 8 ? HIS A 20 ? ASN A 6 HIS A 18 1 ? 13 HELX_P HELX_P2 AA2 ASN A 25 ? ASP A 39 ? ASN A 23 ASP A 37 1 ? 15 HELX_P HELX_P3 AA3 GLN A 42 ? GLN A 57 ? GLN A 40 GLN A 55 1 ? 16 HELX_P HELX_P4 AA4 ASN B 8 ? HIS B 20 ? ASN B 6 HIS B 18 1 ? 13 HELX_P HELX_P5 AA5 ASN B 25 ? ASP B 39 ? ASN B 23 ASP B 37 1 ? 15 HELX_P HELX_P6 AA6 GLN B 42 ? GLN B 57 ? GLN B 40 GLN B 55 1 ? 16 HELX_P HELX_P7 AA7 ASN C 8 ? HIS C 20 ? ASN C 6 HIS C 18 1 ? 13 HELX_P HELX_P8 AA8 ASN C 25 ? ASP C 39 ? ASN C 23 ASP C 37 1 ? 15 HELX_P HELX_P9 AA9 GLN C 42 ? GLN C 57 ? GLN C 40 GLN C 55 1 ? 16 HELX_P HELX_P10 AB1 LYS D 9 ? HIS D 20 ? LYS D 7 HIS D 18 1 ? 12 HELX_P HELX_P11 AB2 ASN D 25 ? ASP D 39 ? ASN D 23 ASP D 37 1 ? 15 HELX_P HELX_P12 AB3 GLN D 42 ? GLN D 57 ? GLN D 40 GLN D 55 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ALA 50 C ? ? ? 1_555 B MLZ 51 N ? ? B ALA 48 B MLZ 49 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? B MLZ 51 C ? ? ? 1_555 B ILE 52 N ? ? B MLZ 49 B ILE 50 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? D ALA 50 C ? ? ? 1_555 D MLZ 51 N ? ? D ALA 48 D MLZ 49 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? D MLZ 51 C ? ? ? 1_555 D ILE 52 N ? ? D MLZ 49 D ILE 50 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MLZ B 51 ? . . . . MLZ B 49 ? 1_555 . . . . . . . LYS 1 MLZ Methylation 'Named protein modification' 2 MLZ D 51 ? . . . . MLZ D 49 ? 1_555 . . . . . . . LYS 1 MLZ Methylation 'Named protein modification' # _pdbx_entry_details.entry_id 9NKM _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z+1/2 4 -x,-y,z+1/2 5 x+1/2,y+1/2,z 6 x+1/2,-y+1/2,-z 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 3.98489329697 -15.5987280045 2.70126710397 0.662434370845 ? -0.0258421780126 ? 0.0535400316472 ? 1.01928284147 ? 0.0103920120511 ? 0.794322453352 ? 2.64623021589 ? -2.1149233107 ? 0.633739384938 ? 2.04573176977 ? 0.07738949632 ? 1.12736102438 ? -0.326040352 ? 0.590806127719 ? 0.245475270266 ? -0.447080033053 ? 0.991260122868 ? -0.955880517599 ? -0.534962305012 ? 0.36801803307 ? -0.21408856721 ? 2 'X-RAY DIFFRACTION' ? refined -3.7687927644 -21.0323025045 7.82604762564 0.547204095417 ? 0.0241993209588 ? -0.0084321310185 ? 0.553299204512 ? -0.0202416260354 ? 0.589336775481 ? 4.73382793188 ? 1.31501929699 ? -0.89210433848 ? 2.2438130121 ? -0.0773117793546 ? 8.22160241322 ? -0.051058396491 ? -0.00563481877699 ? 0.112207764189 ? 0.00403104581607 ? 0.16920608221 ? 0.111443675669 ? 0.022169596279 ? 0.129809694446 ? 0.124351571112 ? 3 'X-RAY DIFFRACTION' ? refined -13.1829907115 -21.7464174429 15.572459696 0.47901480731 ? 0.0625758097329 ? -0.0288061432128 ? 1.11885702089 ? -0.0633386318147 ? 0.65169702603 ? 2.61666470015 ? -2.37434705381 ? 1.62365145594 ? 7.09664453086 ? -2.5019913281 ? 5.55605407452 ? 0.157082493425 ? -0.00712094066565 ? -0.254574267724 ? 0.60353332746 ? -0.434877654374 ? 0.0952225891685 ? -0.28576483692 ? -1.10436503043 ? 0.0714520193725 ? 4 'X-RAY DIFFRACTION' ? refined -19.3769266001 -17.6554548656 11.7500558446 0.626456407988 ? 0.0450409586151 ? 0.102546145522 ? 1.26156209474 ? 0.149619157241 ? 0.586504637057 ? 6.08691951039 ? -1.83192039268 ? 2.34346252578 ? 2.59130360156 ? -2.53323723935 ? 5.45891432584 ? -0.279096411384 ? -0.457931215729 ? -0.370340870309 ? 0.545785404368 ? 0.579285814187 ? 1.03495159174 ? -0.272353284115 ? -2.16080344212 ? 0.0658263396288 ? 5 'X-RAY DIFFRACTION' ? refined -16.1063223553 -11.9422011736 34.563609521 1.51797146238 ? 0.256493934605 ? 0.0332103660033 ? 1.83579025575 ? -0.113925720301 ? 0.896135375518 ? 4.50806214418 ? -0.616798119408 ? -1.09650007674 ? 4.61801933104 ? -2.15852399568 ? 1.77814676916 ? -0.658992295071 ? 0.418381743719 ? 0.315597878631 ? -0.843085661034 ? 0.392158660503 ? -0.455727808361 ? -1.5186801414 ? -2.13212186541 ? 0.346493514771 ? 6 'X-RAY DIFFRACTION' ? refined -10.4678052442 -19.9501606644 30.2036429308 1.07488601706 ? 0.236650890973 ? 0.104726220129 ? 1.26841227644 ? 0.0270448315131 ? 0.608394216068 ? 2.75140793875 ? -2.05599421571 ? 2.86138346709 ? 3.04844675794 ? -1.61504387233 ? 3.27756626836 ? -0.320925544787 ? -0.350474370075 ? 0.0873453418717 ? 1.91619926173 ? 0.616731419531 ? -0.0511800047551 ? -0.840539628194 ? -1.59184772542 ? 0.0187708066573 ? 7 'X-RAY DIFFRACTION' ? refined -4.5585886687 -28.3667373492 21.5756540692 0.588027866762 ? -0.0571825512532 ? 0.0185206382662 ? 0.670022768741 ? 0.0176093868615 ? 0.582468953211 ? 6.48596949891 ? 1.14580219919 ? 3.11659246116 ? 8.92779791879 ? -0.865960330094 ? 6.55223364109 ? -0.402276791235 ? -0.822739783678 ? -0.665216047433 ? 0.54521110383 ? 0.537450819953 ? -0.435287739835 ? 0.668070509162 ? 0.233596110948 ? 0.213761409324 ? 8 'X-RAY DIFFRACTION' ? refined 5.22974944574 -24.2964132912 22.8346483152 0.763978006154 ? -0.102347530531 ? -0.099746350951 ? 1.11347989948 ? 0.053963613212 ? 0.742335852995 ? 4.17711143212 ? 1.75210228925 ? -2.97130012085 ? 4.35784379428 ? 1.00412193408 ? 9.80963406268 ? 0.322098525134 ? -0.0307975735957 ? -0.561295423949 ? -0.10863710595 ? -0.725227965718 ? -1.23252934526 ? -0.507420045195 ? 1.95726235308 ? 0.316687702113 ? 9 'X-RAY DIFFRACTION' ? refined 5.07750071936 -19.6180045479 30.8189377705 0.997085675996 ? -0.209423575203 ? -0.147357947453 ? 1.0893514344 ? 0.13105373069 ? 0.801738891537 ? 0.791268649794 ? -0.267836476035 ? -1.00561403827 ? 0.240988165525 ? 0.0296079400534 ? 1.24603401261 ? -0.343058071617 ? -0.0515391107216 ? 0.0285344572636 ? 0.743181948623 ? 0.100219383708 ? 0.563015307558 ? 0.697800833214 ? 2.61358835365 ? 0.00146663048252 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 B 1 B 5 ? B 14 B 18 ? ? ;chain 'B' and (resid 5 through 18 ) ; 2 'X-RAY DIFFRACTION' 2 B 15 B 19 ? B 53 B 57 ? ? ;chain 'B' and (resid 19 through 57 ) ; 3 'X-RAY DIFFRACTION' 3 A 1 A 3 ? A 21 A 23 ? ? ;chain 'A' and (resid 3 through 23 ) ; 4 'X-RAY DIFFRACTION' 4 A 22 A 24 ? A 55 A 57 ? ? ;chain 'A' and (resid 24 through 57 ) ; 5 'X-RAY DIFFRACTION' 5 D 1 D 6 ? D 13 D 18 ? ? ;chain 'D' and (resid 6 through 18 ) ; 6 'X-RAY DIFFRACTION' 6 D 14 D 19 ? D 52 D 57 ? ? ;chain 'D' and (resid 19 through 57 ) ; 7 'X-RAY DIFFRACTION' 7 C 1 C 3 ? C 15 C 17 ? ? ;chain 'C' and (resid 3 through 17 ) ; 8 'X-RAY DIFFRACTION' 8 C 17 C 19 ? C 38 C 40 ? ? ;chain 'C' and (resid 19 through 40 ) ; 9 'X-RAY DIFFRACTION' 9 C 39 C 41 ? C 55 C 57 ? ? ;chain 'C' and (resid 41 through 57 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -1 ? A MET 1 2 1 Y 1 A ALA 0 ? A ALA 2 3 1 Y 1 A VAL 1 ? A VAL 3 4 1 Y 1 A ASP 2 ? A ASP 4 5 1 Y 1 A LYS 58 ? A LYS 60 6 1 Y 1 A LEU 59 ? A LEU 61 7 1 Y 1 A GLU 60 ? A GLU 62 8 1 Y 1 A HIS 61 ? A HIS 63 9 1 Y 1 A HIS 62 ? A HIS 64 10 1 Y 1 A HIS 63 ? A HIS 65 11 1 Y 1 A HIS 64 ? A HIS 66 12 1 Y 1 A HIS 65 ? A HIS 67 13 1 Y 1 A HIS 66 ? A HIS 68 14 1 Y 1 B MET -1 ? B MET 1 15 1 Y 1 B ALA 0 ? B ALA 2 16 1 Y 1 B VAL 1 ? B VAL 3 17 1 Y 1 B ASP 2 ? B ASP 4 18 1 Y 1 B ASN 3 ? B ASN 5 19 1 Y 1 B LYS 4 ? B LYS 6 20 1 Y 1 B LYS 58 ? B LYS 60 21 1 Y 1 B LEU 59 ? B LEU 61 22 1 Y 1 B GLU 60 ? B GLU 62 23 1 Y 1 B HIS 61 ? B HIS 63 24 1 Y 1 B HIS 62 ? B HIS 64 25 1 Y 1 B HIS 63 ? B HIS 65 26 1 Y 1 B HIS 64 ? B HIS 66 27 1 Y 1 B HIS 65 ? B HIS 67 28 1 Y 1 B HIS 66 ? B HIS 68 29 1 Y 1 C MET -1 ? C MET 1 30 1 Y 1 C ALA 0 ? C ALA 2 31 1 Y 1 C VAL 1 ? C VAL 3 32 1 Y 1 C ASP 2 ? C ASP 4 33 1 Y 1 C LYS 58 ? C LYS 60 34 1 Y 1 C LEU 59 ? C LEU 61 35 1 Y 1 C GLU 60 ? C GLU 62 36 1 Y 1 C HIS 61 ? C HIS 63 37 1 Y 1 C HIS 62 ? C HIS 64 38 1 Y 1 C HIS 63 ? C HIS 65 39 1 Y 1 C HIS 64 ? C HIS 66 40 1 Y 1 C HIS 65 ? C HIS 67 41 1 Y 1 C HIS 66 ? C HIS 68 42 1 Y 1 D MET -1 ? D MET 1 43 1 Y 1 D ALA 0 ? D ALA 2 44 1 Y 1 D VAL 1 ? D VAL 3 45 1 Y 1 D ASP 2 ? D ASP 4 46 1 Y 1 D ASN 3 ? D ASN 5 47 1 Y 1 D LYS 4 ? D LYS 6 48 1 Y 1 D PHE 5 ? D PHE 7 49 1 Y 1 D LYS 58 ? D LYS 60 50 1 Y 1 D LEU 59 ? D LEU 61 51 1 Y 1 D GLU 60 ? D GLU 62 52 1 Y 1 D HIS 61 ? D HIS 63 53 1 Y 1 D HIS 62 ? D HIS 64 54 1 Y 1 D HIS 63 ? D HIS 65 55 1 Y 1 D HIS 64 ? D HIS 66 56 1 Y 1 D HIS 65 ? D HIS 67 57 1 Y 1 D HIS 66 ? D HIS 68 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 HIS N N N N 113 HIS CA C N S 114 HIS C C N N 115 HIS O O N N 116 HIS CB C N N 117 HIS CG C Y N 118 HIS ND1 N Y N 119 HIS CD2 C Y N 120 HIS CE1 C Y N 121 HIS NE2 N Y N 122 HIS OXT O N N 123 HIS H H N N 124 HIS H2 H N N 125 HIS HA H N N 126 HIS HB2 H N N 127 HIS HB3 H N N 128 HIS HD1 H N N 129 HIS HD2 H N N 130 HIS HE1 H N N 131 HIS HE2 H N N 132 HIS HXT H N N 133 HOH O O N N 134 HOH H1 H N N 135 HOH H2 H N N 136 ILE N N N N 137 ILE CA C N S 138 ILE C C N N 139 ILE O O N N 140 ILE CB C N S 141 ILE CG1 C N N 142 ILE CG2 C N N 143 ILE CD1 C N N 144 ILE OXT O N N 145 ILE H H N N 146 ILE H2 H N N 147 ILE HA H N N 148 ILE HB H N N 149 ILE HG12 H N N 150 ILE HG13 H N N 151 ILE HG21 H N N 152 ILE HG22 H N N 153 ILE HG23 H N N 154 ILE HD11 H N N 155 ILE HD12 H N N 156 ILE HD13 H N N 157 ILE HXT H N N 158 LEU N N N N 159 LEU CA C N S 160 LEU C C N N 161 LEU O O N N 162 LEU CB C N N 163 LEU CG C N N 164 LEU CD1 C N N 165 LEU CD2 C N N 166 LEU OXT O N N 167 LEU H H N N 168 LEU H2 H N N 169 LEU HA H N N 170 LEU HB2 H N N 171 LEU HB3 H N N 172 LEU HG H N N 173 LEU HD11 H N N 174 LEU HD12 H N N 175 LEU HD13 H N N 176 LEU HD21 H N N 177 LEU HD22 H N N 178 LEU HD23 H N N 179 LEU HXT H N N 180 LYS N N N N 181 LYS CA C N S 182 LYS C C N N 183 LYS O O N N 184 LYS CB C N N 185 LYS CG C N N 186 LYS CD C N N 187 LYS CE C N N 188 LYS NZ N N N 189 LYS OXT O N N 190 LYS H H N N 191 LYS H2 H N N 192 LYS HA H N N 193 LYS HB2 H N N 194 LYS HB3 H N N 195 LYS HG2 H N N 196 LYS HG3 H N N 197 LYS HD2 H N N 198 LYS HD3 H N N 199 LYS HE2 H N N 200 LYS HE3 H N N 201 LYS HZ1 H N N 202 LYS HZ2 H N N 203 LYS HZ3 H N N 204 LYS HXT H N N 205 MET N N N N 206 MET CA C N S 207 MET C C N N 208 MET O O N N 209 MET CB C N N 210 MET CG C N N 211 MET SD S N N 212 MET CE C N N 213 MET OXT O N N 214 MET H H N N 215 MET H2 H N N 216 MET HA H N N 217 MET HB2 H N N 218 MET HB3 H N N 219 MET HG2 H N N 220 MET HG3 H N N 221 MET HE1 H N N 222 MET HE2 H N N 223 MET HE3 H N N 224 MET HXT H N N 225 MLZ N N N N 226 MLZ CA C N S 227 MLZ CB C N N 228 MLZ CG C N N 229 MLZ CD C N N 230 MLZ CE C N N 231 MLZ NZ N N N 232 MLZ CM C N N 233 MLZ C C N N 234 MLZ O O N N 235 MLZ OXT O N N 236 MLZ H H N N 237 MLZ H2 H N N 238 MLZ HA H N N 239 MLZ HB2 H N N 240 MLZ HB3 H N N 241 MLZ HG2 H N N 242 MLZ HG3 H N N 243 MLZ HD2 H N N 244 MLZ HD3 H N N 245 MLZ HE2 H N N 246 MLZ HE3 H N N 247 MLZ HZ H N N 248 MLZ HCM1 H N N 249 MLZ HCM2 H N N 250 MLZ HCM3 H N N 251 MLZ HXT H N N 252 PHE N N N N 253 PHE CA C N S 254 PHE C C N N 255 PHE O O N N 256 PHE CB C N N 257 PHE CG C Y N 258 PHE CD1 C Y N 259 PHE CD2 C Y N 260 PHE CE1 C Y N 261 PHE CE2 C Y N 262 PHE CZ C Y N 263 PHE OXT O N N 264 PHE H H N N 265 PHE H2 H N N 266 PHE HA H N N 267 PHE HB2 H N N 268 PHE HB3 H N N 269 PHE HD1 H N N 270 PHE HD2 H N N 271 PHE HE1 H N N 272 PHE HE2 H N N 273 PHE HZ H N N 274 PHE HXT H N N 275 PRO N N N N 276 PRO CA C N S 277 PRO C C N N 278 PRO O O N N 279 PRO CB C N N 280 PRO CG C N N 281 PRO CD C N N 282 PRO OXT O N N 283 PRO H H N N 284 PRO HA H N N 285 PRO HB2 H N N 286 PRO HB3 H N N 287 PRO HG2 H N N 288 PRO HG3 H N N 289 PRO HD2 H N N 290 PRO HD3 H N N 291 PRO HXT H N N 292 SER N N N N 293 SER CA C N S 294 SER C C N N 295 SER O O N N 296 SER CB C N N 297 SER OG O N N 298 SER OXT O N N 299 SER H H N N 300 SER H2 H N N 301 SER HA H N N 302 SER HB2 H N N 303 SER HB3 H N N 304 SER HG H N N 305 SER HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 HIS N CA sing N N 107 HIS N H sing N N 108 HIS N H2 sing N N 109 HIS CA C sing N N 110 HIS CA CB sing N N 111 HIS CA HA sing N N 112 HIS C O doub N N 113 HIS C OXT sing N N 114 HIS CB CG sing N N 115 HIS CB HB2 sing N N 116 HIS CB HB3 sing N N 117 HIS CG ND1 sing Y N 118 HIS CG CD2 doub Y N 119 HIS ND1 CE1 doub Y N 120 HIS ND1 HD1 sing N N 121 HIS CD2 NE2 sing Y N 122 HIS CD2 HD2 sing N N 123 HIS CE1 NE2 sing Y N 124 HIS CE1 HE1 sing N N 125 HIS NE2 HE2 sing N N 126 HIS OXT HXT sing N N 127 HOH O H1 sing N N 128 HOH O H2 sing N N 129 ILE N CA sing N N 130 ILE N H sing N N 131 ILE N H2 sing N N 132 ILE CA C sing N N 133 ILE CA CB sing N N 134 ILE CA HA sing N N 135 ILE C O doub N N 136 ILE C OXT sing N N 137 ILE CB CG1 sing N N 138 ILE CB CG2 sing N N 139 ILE CB HB sing N N 140 ILE CG1 CD1 sing N N 141 ILE CG1 HG12 sing N N 142 ILE CG1 HG13 sing N N 143 ILE CG2 HG21 sing N N 144 ILE CG2 HG22 sing N N 145 ILE CG2 HG23 sing N N 146 ILE CD1 HD11 sing N N 147 ILE CD1 HD12 sing N N 148 ILE CD1 HD13 sing N N 149 ILE OXT HXT sing N N 150 LEU N CA sing N N 151 LEU N H sing N N 152 LEU N H2 sing N N 153 LEU CA C sing N N 154 LEU CA CB sing N N 155 LEU CA HA sing N N 156 LEU C O doub N N 157 LEU C OXT sing N N 158 LEU CB CG sing N N 159 LEU CB HB2 sing N N 160 LEU CB HB3 sing N N 161 LEU CG CD1 sing N N 162 LEU CG CD2 sing N N 163 LEU CG HG sing N N 164 LEU CD1 HD11 sing N N 165 LEU CD1 HD12 sing N N 166 LEU CD1 HD13 sing N N 167 LEU CD2 HD21 sing N N 168 LEU CD2 HD22 sing N N 169 LEU CD2 HD23 sing N N 170 LEU OXT HXT sing N N 171 LYS N CA sing N N 172 LYS N H sing N N 173 LYS N H2 sing N N 174 LYS CA C sing N N 175 LYS CA CB sing N N 176 LYS CA HA sing N N 177 LYS C O doub N N 178 LYS C OXT sing N N 179 LYS CB CG sing N N 180 LYS CB HB2 sing N N 181 LYS CB HB3 sing N N 182 LYS CG CD sing N N 183 LYS CG HG2 sing N N 184 LYS CG HG3 sing N N 185 LYS CD CE sing N N 186 LYS CD HD2 sing N N 187 LYS CD HD3 sing N N 188 LYS CE NZ sing N N 189 LYS CE HE2 sing N N 190 LYS CE HE3 sing N N 191 LYS NZ HZ1 sing N N 192 LYS NZ HZ2 sing N N 193 LYS NZ HZ3 sing N N 194 LYS OXT HXT sing N N 195 MET N CA sing N N 196 MET N H sing N N 197 MET N H2 sing N N 198 MET CA C sing N N 199 MET CA CB sing N N 200 MET CA HA sing N N 201 MET C O doub N N 202 MET C OXT sing N N 203 MET CB CG sing N N 204 MET CB HB2 sing N N 205 MET CB HB3 sing N N 206 MET CG SD sing N N 207 MET CG HG2 sing N N 208 MET CG HG3 sing N N 209 MET SD CE sing N N 210 MET CE HE1 sing N N 211 MET CE HE2 sing N N 212 MET CE HE3 sing N N 213 MET OXT HXT sing N N 214 MLZ N CA sing N N 215 MLZ N H sing N N 216 MLZ N H2 sing N N 217 MLZ CA CB sing N N 218 MLZ CA C sing N N 219 MLZ CA HA sing N N 220 MLZ CB CG sing N N 221 MLZ CB HB2 sing N N 222 MLZ CB HB3 sing N N 223 MLZ CG CD sing N N 224 MLZ CG HG2 sing N N 225 MLZ CG HG3 sing N N 226 MLZ CD CE sing N N 227 MLZ CD HD2 sing N N 228 MLZ CD HD3 sing N N 229 MLZ CE NZ sing N N 230 MLZ CE HE2 sing N N 231 MLZ CE HE3 sing N N 232 MLZ NZ CM sing N N 233 MLZ NZ HZ sing N N 234 MLZ CM HCM1 sing N N 235 MLZ CM HCM2 sing N N 236 MLZ CM HCM3 sing N N 237 MLZ C O doub N N 238 MLZ C OXT sing N N 239 MLZ OXT HXT sing N N 240 PHE N CA sing N N 241 PHE N H sing N N 242 PHE N H2 sing N N 243 PHE CA C sing N N 244 PHE CA CB sing N N 245 PHE CA HA sing N N 246 PHE C O doub N N 247 PHE C OXT sing N N 248 PHE CB CG sing N N 249 PHE CB HB2 sing N N 250 PHE CB HB3 sing N N 251 PHE CG CD1 doub Y N 252 PHE CG CD2 sing Y N 253 PHE CD1 CE1 sing Y N 254 PHE CD1 HD1 sing N N 255 PHE CD2 CE2 doub Y N 256 PHE CD2 HD2 sing N N 257 PHE CE1 CZ doub Y N 258 PHE CE1 HE1 sing N N 259 PHE CE2 CZ sing Y N 260 PHE CE2 HE2 sing N N 261 PHE CZ HZ sing N N 262 PHE OXT HXT sing N N 263 PRO N CA sing N N 264 PRO N CD sing N N 265 PRO N H sing N N 266 PRO CA C sing N N 267 PRO CA CB sing N N 268 PRO CA HA sing N N 269 PRO C O doub N N 270 PRO C OXT sing N N 271 PRO CB CG sing N N 272 PRO CB HB2 sing N N 273 PRO CB HB3 sing N N 274 PRO CG CD sing N N 275 PRO CG HG2 sing N N 276 PRO CG HG3 sing N N 277 PRO CD HD2 sing N N 278 PRO CD HD3 sing N N 279 PRO OXT HXT sing N N 280 SER N CA sing N N 281 SER N H sing N N 282 SER N H2 sing N N 283 SER CA C sing N N 284 SER CA CB sing N N 285 SER CA HA sing N N 286 SER C O doub N N 287 SER C OXT sing N N 288 SER CB OG sing N N 289 SER CB HB2 sing N N 290 SER CB HB3 sing N N 291 SER OG HG sing N N 292 SER OXT HXT sing N N 293 TRP N CA sing N N 294 TRP N H sing N N 295 TRP N H2 sing N N 296 TRP CA C sing N N 297 TRP CA CB sing N N 298 TRP CA HA sing N N 299 TRP C O doub N N 300 TRP C OXT sing N N 301 TRP CB CG sing N N 302 TRP CB HB2 sing N N 303 TRP CB HB3 sing N N 304 TRP CG CD1 doub Y N 305 TRP CG CD2 sing Y N 306 TRP CD1 NE1 sing Y N 307 TRP CD1 HD1 sing N N 308 TRP CD2 CE2 doub Y N 309 TRP CD2 CE3 sing Y N 310 TRP NE1 CE2 sing Y N 311 TRP NE1 HE1 sing N N 312 TRP CE2 CZ2 sing Y N 313 TRP CE3 CZ3 doub Y N 314 TRP CE3 HE3 sing N N 315 TRP CZ2 CH2 doub Y N 316 TRP CZ2 HZ2 sing N N 317 TRP CZ3 CH2 sing Y N 318 TRP CZ3 HZ3 sing N N 319 TRP CH2 HH2 sing N N 320 TRP OXT HXT sing N N 321 TYR N CA sing N N 322 TYR N H sing N N 323 TYR N H2 sing N N 324 TYR CA C sing N N 325 TYR CA CB sing N N 326 TYR CA HA sing N N 327 TYR C O doub N N 328 TYR C OXT sing N N 329 TYR CB CG sing N N 330 TYR CB HB2 sing N N 331 TYR CB HB3 sing N N 332 TYR CG CD1 doub Y N 333 TYR CG CD2 sing Y N 334 TYR CD1 CE1 sing Y N 335 TYR CD1 HD1 sing N N 336 TYR CD2 CE2 doub Y N 337 TYR CD2 HD2 sing N N 338 TYR CE1 CZ doub Y N 339 TYR CE1 HE1 sing N N 340 TYR CE2 CZ sing Y N 341 TYR CE2 HE2 sing N N 342 TYR CZ OH sing N N 343 TYR OH HH sing N N 344 TYR OXT HXT sing N N 345 VAL N CA sing N N 346 VAL N H sing N N 347 VAL N H2 sing N N 348 VAL CA C sing N N 349 VAL CA CB sing N N 350 VAL CA HA sing N N 351 VAL C O doub N N 352 VAL C OXT sing N N 353 VAL CB CG1 sing N N 354 VAL CB CG2 sing N N 355 VAL CB HB sing N N 356 VAL CG1 HG11 sing N N 357 VAL CG1 HG12 sing N N 358 VAL CG1 HG13 sing N N 359 VAL CG2 HG21 sing N N 360 VAL CG2 HG22 sing N N 361 VAL CG2 HG23 sing N N 362 VAL OXT HXT sing N N 363 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM150125 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 1 'experimental model' Other ? 'A6B6 chain A' 2 2 'experimental model' Other ? 'A6B6 chain B' # _pdbx_related_exp_data_set.data_reference 10.15785/SBGRID/1169 _pdbx_related_exp_data_set.data_set_type 'diffraction image data' _pdbx_related_exp_data_set.details 'diffraction images' _pdbx_related_exp_data_set.metadata_reference ? _pdbx_related_exp_data_set.ordinal 1 # _space_group.name_H-M_alt 'C 2 2 21' _space_group.name_Hall 'C 2c 2' _space_group.IT_number 20 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9NKM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.025043 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013369 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006789 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #