HEADER OXIDOREDUCTASE 13-MAR-25 9NR0 TITLE FINDING THE EXIT ROUTE OF HYDROGEN PEROXIDE FROM THE MANGANESE TITLE 2 SUPEROXIDE DISMUTASE (MNSOD) ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANGANESE SUPEROXIDE DISMUTASE, METALLOENZYME, PEROXIDE, METAL KEYWDS 2 BINDING PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DASGUPTA,G.E.O.BORGSTAHL REVDAT 2 12-NOV-25 9NR0 1 JRNL REVDAT 1 27-AUG-25 9NR0 0 JRNL AUTH M.DASGUPTA,K.SLOBODNIK,E.A.CONE,J.AZADMANESH,T.KROLL, JRNL AUTH 2 G.E.O.BORGSTAHL JRNL TITL HIGH-RESOLUTION X-RAY STRUCTURE OF GLN143ASN MANGANESE JRNL TITL 2 SUPEROXIDE DISMUTASE CAPTURES MULTIPLE HYDROGEN JRNL TITL 3 PEROXIDE-BINDING SITES. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 81 467 2025 JRNL REFN ESSN 2053-230X JRNL PMID 41128288 JRNL DOI 10.1107/S2053230X25009045 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.DASGUPTA,K.SLOBODNIK,E.A.CONE,J.AZADMANESH,T.KROLL, REMARK 1 AUTH 2 G.E.O.BORGSTAHL REMARK 1 TITL MAPPING THE EXIT ROUTE OF HYDROGEN PEROXIDE FROM THE REMARK 1 TITL 2 MANGANESE SUPEROXIDE DISMUTASE (MNSOD) ACTIVE SITE. REMARK 1 REF BIORXIV 2025 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 40791321 REMARK 1 DOI 10.1101/2025.07.17.665311 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 62854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5800 - 3.7400 0.99 4730 155 0.1570 0.1742 REMARK 3 2 3.7400 - 2.9700 1.00 4488 148 0.1549 0.2044 REMARK 3 3 2.9700 - 2.5900 1.00 4416 145 0.1823 0.2029 REMARK 3 4 2.5900 - 2.3500 0.99 4362 144 0.1733 0.2186 REMARK 3 5 2.3500 - 2.1900 1.00 4341 143 0.1661 0.2057 REMARK 3 6 2.1900 - 2.0600 1.00 4341 142 0.1684 0.2177 REMARK 3 7 2.0600 - 1.9500 1.00 4331 143 0.1733 0.1987 REMARK 3 8 1.9500 - 1.8700 1.00 4320 141 0.1901 0.2582 REMARK 3 9 1.8700 - 1.8000 0.99 4290 141 0.2154 0.2878 REMARK 3 10 1.8000 - 1.7300 1.00 4287 141 0.2219 0.2842 REMARK 3 11 1.7300 - 1.6800 1.00 4285 140 0.2332 0.2662 REMARK 3 12 1.6800 - 1.6300 1.00 4262 141 0.2577 0.2814 REMARK 3 13 1.6300 - 1.5900 1.00 4279 140 0.2775 0.3350 REMARK 3 14 1.5900 - 1.5500 0.96 4122 136 0.3573 0.3769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3489 REMARK 3 ANGLE : 0.861 4766 REMARK 3 CHIRALITY : 0.046 476 REMARK 3 PLANARITY : 0.006 620 REMARK 3 DIHEDRAL : 5.244 457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9NR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1000294045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD XPP REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 38.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M POTASSIUM PHOSPHATE (PH 7.8), PH REMARK 280 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.06933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.13867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.60400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 197.67333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.53467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.06933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 158.13867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 197.67333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.60400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.53467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 386 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 591 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 350 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 -124.39 51.07 REMARK 500 TYR A 165 -17.78 -152.08 REMARK 500 LYS A 170 -137.85 51.48 REMARK 500 ASN B 142 -127.00 52.75 REMARK 500 TYR B 165 -13.72 -148.98 REMARK 500 LYS B 170 -135.26 47.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 671 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 675 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B 676 DISTANCE = 8.69 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 206 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 12 O REMARK 620 2 HOH A 402 O 15.1 REMARK 620 3 HOH A 421 O 15.3 4.0 REMARK 620 4 HOH A 444 O 16.5 2.2 2.6 REMARK 620 5 GLY B 85 O 16.3 3.2 1.5 1.3 REMARK 620 6 ASN B 182 O 14.3 1.9 2.3 2.1 2.3 REMARK 620 7 HOH B 389 O 12.7 2.7 3.5 3.8 3.9 1.7 REMARK 620 8 HOH B 490 O 13.3 4.0 2.0 3.8 3.1 2.1 2.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 16 O REMARK 620 2 TYR A 169 OH 81.5 REMARK 620 3 HOH A 568 O 77.5 132.5 REMARK 620 4 HOH A 617 O 169.2 91.9 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 74 NE2 88.8 REMARK 620 3 ASP A 159 OD2 87.0 104.4 REMARK 620 4 HIS A 163 NE2 89.0 139.3 116.0 REMARK 620 5 HOH A 309 O 98.7 80.0 172.9 60.2 REMARK 620 6 HOH A 414 O 171.5 91.8 84.6 96.1 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 205 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 182 O REMARK 620 2 HOH A 422 O 15.5 REMARK 620 3 HOH A 499 O 13.1 2.6 REMARK 620 4 HOH B 609 O 14.6 1.9 2.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 593 O REMARK 620 2 HOH A 597 O 97.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 74 NE2 88.7 REMARK 620 3 ASP B 159 OD2 83.8 106.9 REMARK 620 4 HIS B 163 NE2 89.9 140.4 112.3 REMARK 620 5 HOH B 315 O 93.0 73.3 176.8 67.3 REMARK 620 6 HOH B 454 O 172.3 92.7 88.6 93.9 94.6 REMARK 620 N 1 2 3 4 5 DBREF 9NR0 A 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 9NR0 B 1 198 UNP P04179 SODM_HUMAN 25 222 SEQADV 9NR0 MET A 0 UNP P04179 INITIATING METHIONINE SEQADV 9NR0 ASN A 143 UNP P04179 GLN 167 ENGINEERED MUTATION SEQADV 9NR0 MET B 0 UNP P04179 INITIATING METHIONINE SEQADV 9NR0 ASN B 143 UNP P04179 GLN 167 ENGINEERED MUTATION SEQRES 1 A 199 MET LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY SEQRES 2 A 199 ALA LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU SEQRES 3 A 199 HIS HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU SEQRES 4 A 199 ASN VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS SEQRES 5 A 199 GLY ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU SEQRES 6 A 199 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 A 199 TRP THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS SEQRES 8 A 199 GLY GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER SEQRES 9 A 199 PHE ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL SEQRES 10 A 199 GLY VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN SEQRES 11 A 199 LYS GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN SEQRES 12 A 199 ASN ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU SEQRES 13 A 199 LEU GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN SEQRES 14 A 199 TYR LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP SEQRES 15 A 199 ASN VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET SEQRES 16 A 199 ALA CYS LYS LYS SEQRES 1 B 199 MET LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY SEQRES 2 B 199 ALA LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU SEQRES 3 B 199 HIS HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU SEQRES 4 B 199 ASN VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS SEQRES 5 B 199 GLY ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU SEQRES 6 B 199 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 B 199 TRP THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS SEQRES 8 B 199 GLY GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER SEQRES 9 B 199 PHE ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL SEQRES 10 B 199 GLY VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN SEQRES 11 B 199 LYS GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN SEQRES 12 B 199 ASN ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU SEQRES 13 B 199 LEU GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN SEQRES 14 B 199 TYR LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP SEQRES 15 B 199 ASN VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET SEQRES 16 B 199 ALA CYS LYS LYS HET K A 201 2 HET PO4 A 202 5 HET MN A 203 1 HET PO4 A 204 10 HET PO4 A 205 5 HET PO4 B 201 5 HET PO4 B 202 5 HET MN B 203 1 HET PO4 B 204 5 HET K B 205 1 HET K B 206 1 HET PO4 B 207 5 HET PO4 B 208 10 HET PO4 B 209 5 HET PO4 B 210 5 HET PO4 B 211 10 HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION HETNAM MN MANGANESE (II) ION FORMUL 3 K 3(K 1+) FORMUL 4 PO4 11(O4 P 3-) FORMUL 5 MN 2(MN 2+) FORMUL 19 HOH *747(H2 O) HELIX 1 AA1 ASN A 19 LYS A 29 1 11 HELIX 2 AA2 LYS A 29 GLY A 52 1 24 HELIX 3 AA3 ASP A 53 LEU A 60 1 8 HELIX 4 AA4 LEU A 60 LEU A 81 1 22 HELIX 5 AA5 LYS A 90 GLY A 102 1 13 HELIX 6 AA6 SER A 103 GLY A 117 1 15 HELIX 7 AA7 PRO A 145 GLY A 151 1 7 HELIX 8 AA8 TRP A 161 ALA A 164 5 4 HELIX 9 AA9 TYR A 165 LYS A 170 1 6 HELIX 10 AB1 VAL A 172 TRP A 181 1 10 HELIX 11 AB2 ASN A 182 ILE A 184 5 3 HELIX 12 AB3 ASN A 185 LYS A 197 1 13 HELIX 13 AB4 ASN B 19 LYS B 29 1 11 HELIX 14 AB5 LYS B 29 GLY B 52 1 24 HELIX 15 AB6 ASP B 53 LEU B 60 1 8 HELIX 16 AB7 LEU B 60 ASN B 80 1 21 HELIX 17 AB8 LYS B 90 GLY B 102 1 13 HELIX 18 AB9 SER B 103 GLY B 117 1 15 HELIX 19 AC1 PRO B 145 GLY B 151 1 7 HELIX 20 AC2 TRP B 161 ALA B 164 5 4 HELIX 21 AC3 TYR B 165 LYS B 170 1 6 HELIX 22 AC4 VAL B 172 TRP B 181 1 10 HELIX 23 AC5 ASN B 182 ILE B 184 5 3 HELIX 24 AC6 ASN B 185 LYS B 198 1 14 SHEET 1 AA1 3 HIS A 134 PRO A 141 0 SHEET 2 AA1 3 GLY A 122 ASN A 129 -1 N GLY A 127 O GLN A 136 SHEET 3 AA1 3 ILE A 153 ASP A 159 -1 O LEU A 156 N LEU A 126 SHEET 1 AA2 3 HIS B 134 PRO B 141 0 SHEET 2 AA2 3 GLY B 122 ASN B 129 -1 N ASN B 129 O HIS B 134 SHEET 3 AA2 3 ILE B 153 ASP B 159 -1 O LEU B 156 N LEU B 126 LINK O GLY A 12 K K B 206 1555 1445 3.16 LINK O PRO A 16 K A K A 201 1555 1555 3.08 LINK NE2 HIS A 26 MN MN A 203 1555 1555 2.15 LINK NE2 HIS A 74 MN MN A 203 1555 1555 2.12 LINK OD2 ASP A 159 MN MN A 203 1555 1555 2.04 LINK NE2 HIS A 163 MN MN A 203 1555 1555 2.24 LINK OH TYR A 169 K A K A 201 1555 1555 2.77 LINK O ASN A 182 K K B 205 1555 1445 2.86 LINK K A K A 201 O AHOH A 568 1555 1555 2.74 LINK K B K A 201 O HOH A 593 1555 1555 2.92 LINK K B K A 201 O HOH A 597 1555 1555 2.68 LINK K A K A 201 O HOH A 617 1555 1555 2.95 LINK MN MN A 203 O HOH A 309 1555 1555 2.23 LINK MN MN A 203 O HOH A 414 1555 1555 2.12 LINK O HOH A 402 K K B 206 1665 1555 3.04 LINK O HOH A 421 K K B 206 1665 1555 2.79 LINK O HOH A 422 K K B 205 1665 1555 2.91 LINK O HOH A 444 K K B 206 1665 1555 2.83 LINK O HOH A 499 K K B 205 1665 1555 2.95 LINK NE2 HIS B 26 MN MN B 203 1555 1555 2.20 LINK NE2 HIS B 74 MN MN B 203 1555 1555 2.15 LINK O GLY B 85 K K B 206 1555 1555 2.86 LINK OD2 ASP B 159 MN MN B 203 1555 1555 2.03 LINK NE2 HIS B 163 MN MN B 203 1555 1555 2.16 LINK O ASN B 182 K K B 206 1555 1555 2.75 LINK MN MN B 203 O HOH B 315 1555 1555 2.20 LINK MN MN B 203 O HOH B 454 1555 1555 2.09 LINK K K B 205 O HOH B 609 1555 1555 3.06 LINK K K B 206 O HOH B 389 1555 1555 3.10 LINK K K B 206 O HOH B 490 1555 1555 2.72 CISPEP 1 GLU A 15 PRO A 16 0 6.27 CISPEP 2 GLU B 15 PRO B 16 0 -1.24 CISPEP 3 GLU B 15 PRO B 16 0 -2.97 CRYST1 78.203 78.203 237.208 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012787 0.007383 0.000000 0.00000 SCALE2 0.000000 0.014765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004216 0.00000 CONECT 277 6552 CONECT 479 6559 CONECT 1309 6559 CONECT 2650 6559 CONECT 2720 6559 CONECT 2827 6552 CONECT 3808 6585 CONECT 4571 6585 CONECT 4742 6592 CONECT 5860 6585 CONECT 5929 6585 CONECT 6266 6592 CONECT 6552 277 2827 6907 6958 CONECT 6553 6934 6938 CONECT 6554 6555 6556 6557 6558 CONECT 6555 6554 CONECT 6556 6554 CONECT 6557 6554 CONECT 6558 6554 CONECT 6559 479 1309 2650 2720 CONECT 6559 6636 6745 CONECT 6560 6562 6564 6566 6568 CONECT 6561 6563 6565 6567 6569 CONECT 6562 6560 CONECT 6563 6561 CONECT 6564 6560 CONECT 6565 6561 CONECT 6566 6560 CONECT 6567 6561 CONECT 6568 6560 CONECT 6569 6561 CONECT 6570 6571 6572 6573 6574 CONECT 6571 6570 CONECT 6572 6570 CONECT 6573 6570 CONECT 6574 6570 CONECT 6575 6576 6577 6578 6579 CONECT 6576 6575 CONECT 6577 6575 CONECT 6578 6575 CONECT 6579 6575 CONECT 6580 6581 6582 6583 6584 CONECT 6581 6580 CONECT 6582 6580 CONECT 6583 6580 CONECT 6584 6580 CONECT 6585 3808 4571 5860 5929 CONECT 6585 7031 7178 CONECT 6586 6587 6588 6589 6590 CONECT 6587 6586 CONECT 6588 6586 CONECT 6589 6586 CONECT 6590 6586 CONECT 6591 7339 CONECT 6592 4742 6266 7108 7216 CONECT 6593 6594 6595 6596 6597 CONECT 6594 6593 CONECT 6595 6593 CONECT 6596 6593 CONECT 6597 6593 CONECT 6598 6600 6602 6604 6606 CONECT 6599 6601 6603 6605 6607 CONECT 6600 6598 CONECT 6601 6599 CONECT 6602 6598 CONECT 6603 6599 CONECT 6604 6598 CONECT 6605 6599 CONECT 6606 6598 CONECT 6607 6599 CONECT 6608 6609 6610 6611 6612 CONECT 6609 6608 CONECT 6610 6608 CONECT 6611 6608 CONECT 6612 6608 CONECT 6613 6614 6615 6616 6617 CONECT 6614 6613 CONECT 6615 6613 CONECT 6616 6613 CONECT 6617 6613 CONECT 6618 6620 6622 6624 6626 CONECT 6619 6621 6623 6625 6627 CONECT 6620 6618 CONECT 6621 6619 CONECT 6622 6618 CONECT 6623 6619 CONECT 6624 6618 CONECT 6625 6619 CONECT 6626 6618 CONECT 6627 6619 CONECT 6636 6559 CONECT 6745 6559 CONECT 6907 6552 CONECT 6934 6553 CONECT 6938 6553 CONECT 6958 6552 CONECT 7031 6585 CONECT 7108 6592 CONECT 7178 6585 CONECT 7216 6592 CONECT 7339 6591 MASTER 368 0 16 24 6 0 0 6 3956 2 101 32 END