HEADER IMMUNE SYSTEM 24-MAR-25 9NWN TITLE STRUCTURE OF MINIMAL CRISPR POLYMERASE BOUND TO APNHPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MCPOL DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: MINIMAL CRISPR POLYMERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: ECOR 31; SOURCE 5 ATCC: 35350; SOURCE 6 GENE: DU321_04150; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: F-OMPT HSDSB(RB- MB-) GAL DCM (DE3) SOURCE 10 PLYSSRARE2 (CAMR); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PET18 KEYWDS CYCLASE, PALM DOMAIN, CYCLIC OLIGONUCLEOTIDE, MCPOL, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.E.DOHERTY,C.B.BOLLING,X.E.WILCOX,J.A.DOUDNA REVDAT 2 11-MAR-26 9NWN 1 JRNL REVDAT 1 27-AUG-25 9NWN 0 JRNL AUTH E.E.DOHERTY,B.A.ADLER,P.H.YOON,K.HSIEH,K.LOI,E.G.ARMBRUSTER, JRNL AUTH 2 A.LAHIRI,C.S.BOLLING,X.E.WILCOX,A.AKKATI,A.T.IAVARONE, JRNL AUTH 3 J.POGLIANO,J.A.DOUDNA JRNL TITL A MINIATURE CRISPR-CAS10 ENZYME CONFERS IMMUNITY BY JRNL TITL 2 INHIBITORY SIGNALLING. JRNL REF NATURE V. 647 997 2025 JRNL REFN ESSN 1476-4687 JRNL PMID 41034576 JRNL DOI 10.1038/S41586-025-09569-9 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 12293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5500 - 4.7400 0.99 1343 149 0.2052 0.2198 REMARK 3 2 4.7400 - 3.7600 0.95 1197 134 0.1836 0.1970 REMARK 3 3 3.7600 - 3.2900 0.95 1196 133 0.2252 0.2665 REMARK 3 4 3.2900 - 2.9900 1.00 1237 138 0.2310 0.2631 REMARK 3 5 2.9900 - 2.7700 0.99 1225 135 0.2512 0.2930 REMARK 3 6 2.7700 - 2.6100 0.98 1209 135 0.2708 0.3284 REMARK 3 7 2.6100 - 2.4800 0.99 1222 134 0.2586 0.2999 REMARK 3 8 2.4800 - 2.3700 0.99 1221 136 0.2698 0.2695 REMARK 3 9 2.3700 - 2.2800 1.00 1214 135 0.2809 0.2899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.268 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.847 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1987 REMARK 3 ANGLE : 1.959 2690 REMARK 3 CHIRALITY : 0.086 307 REMARK 3 PLANARITY : 0.015 332 REMARK 3 DIHEDRAL : 29.256 335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4807 31.4286 -31.8456 REMARK 3 T TENSOR REMARK 3 T11: 0.4232 T22: 0.2818 REMARK 3 T33: 0.3009 T12: -0.0360 REMARK 3 T13: -0.0091 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.7765 L22: 6.0050 REMARK 3 L33: 3.8680 L12: -2.6980 REMARK 3 L13: -0.6101 L23: 0.6622 REMARK 3 S TENSOR REMARK 3 S11: -0.3251 S12: -0.1520 S13: 0.3940 REMARK 3 S21: -0.0366 S22: 0.4738 S23: -1.2551 REMARK 3 S31: -0.1655 S32: 0.2761 S33: -0.2602 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9083 29.8986 -42.8149 REMARK 3 T TENSOR REMARK 3 T11: 0.4982 T22: 0.3175 REMARK 3 T33: 0.3095 T12: -0.0344 REMARK 3 T13: 0.0679 T23: 0.0938 REMARK 3 L TENSOR REMARK 3 L11: 9.0917 L22: 6.8616 REMARK 3 L33: 6.0344 L12: -7.3827 REMARK 3 L13: -4.8752 L23: 5.7050 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: 0.0323 S13: 0.1255 REMARK 3 S21: -0.7927 S22: -0.0682 S23: -0.0974 REMARK 3 S31: -0.3788 S32: 0.3729 S33: -0.0023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7129 16.1073 -33.8193 REMARK 3 T TENSOR REMARK 3 T11: 0.4361 T22: 0.1927 REMARK 3 T33: 0.4020 T12: -0.0026 REMARK 3 T13: 0.0728 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.9191 L22: 0.6344 REMARK 3 L33: 6.2179 L12: -0.7837 REMARK 3 L13: 0.6127 L23: -0.6961 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.0418 S13: -0.0324 REMARK 3 S21: -0.3078 S22: -0.0211 S23: -0.3697 REMARK 3 S31: 0.1612 S32: 0.3833 S33: 0.0251 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3376 16.0826 -11.7319 REMARK 3 T TENSOR REMARK 3 T11: 0.9434 T22: 0.2640 REMARK 3 T33: 0.4457 T12: -0.0234 REMARK 3 T13: 0.1459 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 3.1999 L22: 3.8072 REMARK 3 L33: 2.4046 L12: -3.2288 REMARK 3 L13: 0.2108 L23: -0.5080 REMARK 3 S TENSOR REMARK 3 S11: -0.5256 S12: 0.3274 S13: -0.3810 REMARK 3 S21: -0.1411 S22: -0.1890 S23: -0.1485 REMARK 3 S31: 0.0726 S32: -0.0674 S33: -0.4091 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2449 38.0915 -15.0364 REMARK 3 T TENSOR REMARK 3 T11: 0.7789 T22: 0.2221 REMARK 3 T33: 0.4056 T12: -0.0201 REMARK 3 T13: 0.0381 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 5.1081 L22: 5.6345 REMARK 3 L33: 4.2099 L12: -1.1834 REMARK 3 L13: -1.2869 L23: -3.7355 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 0.1906 S13: -0.2945 REMARK 3 S21: 0.3819 S22: 0.3873 S23: 1.3606 REMARK 3 S31: 0.0795 S32: -0.6318 S33: -0.2171 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7129 26.5085 -2.7581 REMARK 3 T TENSOR REMARK 3 T11: 0.7512 T22: 0.2672 REMARK 3 T33: 0.4015 T12: -0.0906 REMARK 3 T13: 0.0856 T23: -0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.7912 L22: 3.3220 REMARK 3 L33: 3.5018 L12: -0.6238 REMARK 3 L13: -0.2685 L23: -3.1913 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: -0.2004 S13: 0.1620 REMARK 3 S21: 0.2712 S22: 0.0636 S23: 0.7054 REMARK 3 S31: 0.0621 S32: -0.0315 S33: -0.0383 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3324 12.0033 -4.9002 REMARK 3 T TENSOR REMARK 3 T11: 0.9059 T22: 0.2364 REMARK 3 T33: 0.4601 T12: -0.1143 REMARK 3 T13: 0.0600 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.8498 L22: 1.4804 REMARK 3 L33: 2.4961 L12: -0.4920 REMARK 3 L13: -1.2524 L23: 0.2940 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: 0.0194 S13: -0.5275 REMARK 3 S21: 0.6149 S22: -0.0335 S23: 0.6295 REMARK 3 S31: 0.3719 S32: -0.1462 S33: 0.1930 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7694 26.4904 -11.2017 REMARK 3 T TENSOR REMARK 3 T11: 0.4771 T22: 0.6448 REMARK 3 T33: 0.5753 T12: 0.1255 REMARK 3 T13: 0.0083 T23: -0.1054 REMARK 3 L TENSOR REMARK 3 L11: 4.8963 L22: 8.6187 REMARK 3 L33: 9.2694 L12: 1.3132 REMARK 3 L13: -5.0826 L23: 4.3741 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: 0.3141 S13: -0.2819 REMARK 3 S21: 0.4211 S22: 0.1883 S23: 0.9988 REMARK 3 S31: -1.3350 S32: -1.6710 S33: 0.0426 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3263 11.2058 -18.1182 REMARK 3 T TENSOR REMARK 3 T11: 0.5615 T22: 0.2153 REMARK 3 T33: 0.3916 T12: -0.0406 REMARK 3 T13: 0.0601 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.5917 L22: 0.6953 REMARK 3 L33: 2.7723 L12: -1.0293 REMARK 3 L13: -0.9793 L23: -0.0753 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: 0.1208 S13: -0.5889 REMARK 3 S21: 0.6655 S22: -0.1655 S23: 0.2126 REMARK 3 S31: 0.1794 S32: -0.0095 S33: 0.2463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9NWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1000294389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12367 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 48.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 8.0, 15% PEG 1500, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.56750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.38450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.56750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.38450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 56.76900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 56.76900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 333 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 121 REMARK 465 LEU B 122 REMARK 465 TYR B 123 REMARK 465 PHE B 124 REMARK 465 GLN B 125 REMARK 465 ASN A 121 REMARK 465 LEU A 122 REMARK 465 TYR A 123 REMARK 465 PHE A 124 REMARK 465 GLN A 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP B 64 O ASP B 64 2555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 22 70.85 -112.88 REMARK 500 ALA B 56 -122.44 57.13 REMARK 500 ASP B 82 56.11 34.07 REMARK 500 ASN B 107 37.04 -143.09 REMARK 500 LYS B 109 178.85 64.00 REMARK 500 SER A 22 70.16 -110.67 REMARK 500 ALA A 56 -118.27 57.42 REMARK 500 ASP A 82 58.40 35.06 REMARK 500 LYS A 109 -172.52 61.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR B 63 13.08 REMARK 500 THR B 63 13.18 REMARK 500 ASP B 64 13.43 REMARK 500 ASN A 65 11.96 REMARK 500 ASN A 65 12.12 REMARK 500 GLU A 66 -10.77 REMARK 500 GLU A 66 -10.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD1 REMARK 620 2 GLY B 7 O 76.9 REMARK 620 3 ASP B 57 OD2 91.8 72.1 REMARK 620 4 ZAN B 201 O1B 176.0 99.5 85.3 REMARK 620 5 ZAN B 201 O1G 75.8 99.3 166.4 106.8 REMARK 620 6 ZAN B 201 O2A 94.5 167.7 117.5 89.3 69.8 REMARK 620 7 ZAN B 201 O3B 120.9 81.0 131.3 59.7 54.8 96.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD1 REMARK 620 2 GLY A 7 O 84.9 REMARK 620 3 ASP A 57 OD2 93.0 72.9 REMARK 620 4 ZAN A 201 O1B 174.3 92.5 91.0 REMARK 620 5 ZAN A 201 O1G 90.7 90.0 162.1 84.3 REMARK 620 6 ZAN A 201 O2A 101.5 165.8 119.0 80.0 77.4 REMARK 620 N 1 2 3 4 5 DBREF1 9NWN B 1 119 UNP A0A426EXS8_ECOLX DBREF2 9NWN B A0A426EXS8 1 119 DBREF1 9NWN A 1 119 UNP A0A426EXS8_ECOLX DBREF2 9NWN A A0A426EXS8 1 119 SEQADV 9NWN GLU B 120 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN ASN B 121 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN LEU B 122 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN TYR B 123 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN PHE B 124 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN GLN B 125 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN GLU A 120 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN ASN A 121 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN LEU A 122 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN TYR A 123 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN PHE A 124 UNP A0A426EXS EXPRESSION TAG SEQADV 9NWN GLN A 125 UNP A0A426EXS EXPRESSION TAG SEQRES 1 B 125 MET TYR ILE ALA ILE ASP GLY ASP ASP VAL GLY ARG LYS SEQRES 2 B 125 ILE THR SER SER TYR LEU SER ASN SER GLU GLU ARG LEU SEQRES 3 B 125 THR TYR ILE SER ASN LYS LEU ASN ASP THR THR LYS LYS SEQRES 4 B 125 ILE SER LYS MET LEU LEU SER ASN GLY PHE GLU ILE ILE SEQRES 5 B 125 PHE GLN ALA ALA ASP GLY VAL THR ALA LYS THR ASP ASN SEQRES 6 B 125 GLU VAL ASN LEU ASN PHE VAL PHE ASP LYS ILE LYS SER SEQRES 7 B 125 TYR SER PHE ASP GLU ILE THR PHE SER ALA GLY VAL GLY SEQRES 8 B 125 ALA ASN LEU ARG GLU ALA TYR VAL ALA LEU LEU ASN SER SEQRES 9 B 125 LYS SER ASN GLY LYS ASN MET ILE SER ILE TYR LYS ASP SEQRES 10 B 125 ILE LEU GLU ASN LEU TYR PHE GLN SEQRES 1 A 125 MET TYR ILE ALA ILE ASP GLY ASP ASP VAL GLY ARG LYS SEQRES 2 A 125 ILE THR SER SER TYR LEU SER ASN SER GLU GLU ARG LEU SEQRES 3 A 125 THR TYR ILE SER ASN LYS LEU ASN ASP THR THR LYS LYS SEQRES 4 A 125 ILE SER LYS MET LEU LEU SER ASN GLY PHE GLU ILE ILE SEQRES 5 A 125 PHE GLN ALA ALA ASP GLY VAL THR ALA LYS THR ASP ASN SEQRES 6 A 125 GLU VAL ASN LEU ASN PHE VAL PHE ASP LYS ILE LYS SER SEQRES 7 A 125 TYR SER PHE ASP GLU ILE THR PHE SER ALA GLY VAL GLY SEQRES 8 A 125 ALA ASN LEU ARG GLU ALA TYR VAL ALA LEU LEU ASN SER SEQRES 9 A 125 LYS SER ASN GLY LYS ASN MET ILE SER ILE TYR LYS ASP SEQRES 10 A 125 ILE LEU GLU ASN LEU TYR PHE GLN HET ZAN B 201 44 HET MG B 202 1 HET ZAN A 201 43 HET MG A 202 1 HETNAM ZAN 5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY) HETNAM 2 ZAN PHOSPHORYL]AMINO}PHOSPHORYL]ADENOSINE HETNAM MG MAGNESIUM ION FORMUL 3 ZAN 2(C10 H17 N6 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *71(H2 O) HELIX 1 AA1 ASP B 9 SER B 20 1 12 HELIX 2 AA2 SER B 22 ASN B 47 1 26 HELIX 3 AA3 ASN B 68 SER B 78 1 11 HELIX 4 AA4 ASN B 93 SER B 106 1 14 HELIX 5 AA5 TYR B 115 GLU B 120 1 6 HELIX 6 AA6 ASP A 9 SER A 20 1 12 HELIX 7 AA7 SER A 22 SER A 46 1 25 HELIX 8 AA8 ASN A 68 LYS A 77 1 10 HELIX 9 AA9 SER A 78 SER A 80 5 3 HELIX 10 AB1 ASN A 93 ASN A 107 1 15 HELIX 11 AB2 TYR A 115 GLU A 120 1 6 SHEET 1 AA1 5 GLU B 50 ALA B 55 0 SHEET 2 AA1 5 GLY B 58 LYS B 62 -1 O THR B 60 N ILE B 52 SHEET 3 AA1 5 TYR B 2 GLY B 7 -1 N ILE B 5 O VAL B 59 SHEET 4 AA1 5 PHE B 86 GLY B 91 -1 O GLY B 91 N TYR B 2 SHEET 5 AA1 5 ILE B 112 ILE B 114 1 O SER B 113 N ALA B 88 SHEET 1 AA2 5 GLU A 50 ALA A 55 0 SHEET 2 AA2 5 GLY A 58 LYS A 62 -1 O LYS A 62 N GLU A 50 SHEET 3 AA2 5 TYR A 2 GLY A 7 -1 N ILE A 3 O ALA A 61 SHEET 4 AA2 5 PHE A 86 GLY A 91 -1 O GLY A 89 N ALA A 4 SHEET 5 AA2 5 ILE A 112 ILE A 114 1 O SER A 113 N VAL A 90 LINK OD1 ASP B 6 MG MG B 202 1555 1555 2.75 LINK O GLY B 7 MG MG B 202 1555 1555 2.28 LINK OD2 ASP B 57 MG MG B 202 1555 1555 2.87 LINK O1B ZAN B 201 MG MG B 202 1555 1555 2.73 LINK O1G ZAN B 201 MG MG B 202 1555 1555 2.81 LINK O2A ZAN B 201 MG MG B 202 1555 1555 2.47 LINK O3B ZAN B 201 MG MG B 202 1555 1555 2.71 LINK OD1 ASP A 6 MG MG A 202 1555 1555 2.08 LINK O GLY A 7 MG MG A 202 1555 1555 2.27 LINK OD2 ASP A 57 MG MG A 202 1555 1555 2.58 LINK O1B ZAN A 201 MG MG A 202 1555 1555 2.26 LINK O1G ZAN A 201 MG MG A 202 1555 1555 2.34 LINK O2A ZAN A 201 MG MG A 202 1555 1555 1.84 CRYST1 49.135 56.769 93.705 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010672 0.00000 CONECT 95 3844 CONECT 104 3844 CONECT 899 3844 CONECT 1997 3888 CONECT 2006 3888 CONECT 2801 3888 CONECT 3800 3803 3806 3809 3812 CONECT 3801 3804 3807 3809 3810 CONECT 3802 3805 3808 3810 3811 CONECT 3803 3800 CONECT 3804 3801 3844 CONECT 3805 3802 3844 CONECT 3806 3800 3844 CONECT 3807 3801 CONECT 3808 3802 CONECT 3809 3800 3801 3831 CONECT 3810 3801 3802 3844 CONECT 3811 3802 CONECT 3812 3800 3813 CONECT 3813 3812 3814 3832 3833 CONECT 3814 3813 3815 3816 3834 CONECT 3815 3814 3820 CONECT 3816 3814 3817 3818 3835 CONECT 3817 3816 3836 CONECT 3818 3816 3819 3820 3837 CONECT 3819 3818 3838 CONECT 3820 3815 3818 3821 3839 CONECT 3821 3820 3822 3830 CONECT 3822 3821 3823 3840 CONECT 3823 3822 3824 CONECT 3824 3823 3825 3830 CONECT 3825 3824 3826 3827 CONECT 3826 3825 3841 3842 CONECT 3827 3825 3828 CONECT 3828 3827 3829 3843 CONECT 3829 3828 3830 CONECT 3830 3821 3824 3829 CONECT 3831 3809 CONECT 3832 3813 CONECT 3833 3813 CONECT 3834 3814 CONECT 3835 3816 CONECT 3836 3817 CONECT 3837 3818 CONECT 3838 3819 CONECT 3839 3820 CONECT 3840 3822 CONECT 3841 3826 CONECT 3842 3826 CONECT 3843 3828 CONECT 3844 95 104 899 3804 CONECT 3844 3805 3806 3810 CONECT 3845 3848 3851 3854 3857 CONECT 3846 3849 3852 3854 3855 CONECT 3847 3850 3853 3855 3856 CONECT 3848 3845 CONECT 3849 3846 3888 CONECT 3850 3847 3888 CONECT 3851 3845 3888 CONECT 3852 3846 CONECT 3853 3847 CONECT 3854 3845 3846 3876 CONECT 3855 3846 3847 CONECT 3856 3847 CONECT 3857 3845 3858 CONECT 3858 3857 3859 3877 3878 CONECT 3859 3858 3860 3861 3879 CONECT 3860 3859 3865 CONECT 3861 3859 3862 3863 3880 CONECT 3862 3861 3881 CONECT 3863 3861 3864 3865 3882 CONECT 3864 3863 CONECT 3865 3860 3863 3866 3883 CONECT 3866 3865 3867 3875 CONECT 3867 3866 3868 3884 CONECT 3868 3867 3869 CONECT 3869 3868 3870 3875 CONECT 3870 3869 3871 3872 CONECT 3871 3870 3885 3886 CONECT 3872 3870 3873 CONECT 3873 3872 3874 3887 CONECT 3874 3873 3875 CONECT 3875 3866 3869 3874 CONECT 3876 3854 CONECT 3877 3858 CONECT 3878 3858 CONECT 3879 3859 CONECT 3880 3861 CONECT 3881 3862 CONECT 3882 3863 CONECT 3883 3865 CONECT 3884 3867 CONECT 3885 3871 CONECT 3886 3871 CONECT 3887 3873 CONECT 3888 1997 2006 2801 3849 CONECT 3888 3850 3851 MASTER 470 0 4 11 10 0 0 6 2013 2 97 20 END