HEADER LIGASE 24-MAR-25 9NWS TITLE CRYO-EM STRUCTURE OF DDB1DB:CRBN:MEZIGDOMIDE:SALL4(392-449) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAL-LIKE PROTEIN 4; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: ZINC FINGER PROTEIN 797,ZINC FINGER PROTEIN SALL4; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: STREPII-AVI-TEV-SALL4(392-449); COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA DAMAGE-BINDING PROTEIN 1; COMPND 9 CHAIN: A; COMPND 10 SYNONYM: DDB P127 SUBUNIT,DNA DAMAGE-BINDING PROTEIN A,DDBA,DAMAGE- COMPND 11 SPECIFIC DNA-BINDING PROTEIN 1,HBV X-ASSOCIATED PROTEIN 1,XAP-1,UV- COMPND 12 DAMAGED DNA-BINDING FACTOR,UV-DAMAGED DNA-BINDING PROTEIN 1,UV-DDB 1, COMPND 13 XPE-BINDING FACTOR,XPE-BF,XERODERMA PIGMENTOSUM GROUP E-COMPLEMENTING COMPND 14 PROTEIN,XPCE; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: HIS6-TEV-DDB1(1-1140), WITH RESIDUES 396-705 REPLACED COMPND 17 WITH A GNGNSG LINKER,HIS6-TEV-DDB1(1-1140), WITH RESIDUES 396-705 COMPND 18 REPLACED WITH A GNGNSG LINKER; COMPND 19 MOL_ID: 3; COMPND 20 MOLECULE: PROTEIN CEREBLON; COMPND 21 CHAIN: B; COMPND 22 ENGINEERED: YES; COMPND 23 OTHER_DETAILS: FLAG-SPY-TEV-CRBN(1-442) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SALL4, ZNF797; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: DDB1, XAP1; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: CRBN; SOURCE 22 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE KEYWDS DDB1, CEREBLON, MEZIGDOMIDE, SALL4, LIGASE EXPDTA ELECTRON MICROSCOPY AUTHOR J.PARK,M.HUNKELER,S.S.ROY BURMAN,E.S.FISHCER REVDAT 1 04-FEB-26 9NWS 0 JRNL AUTH M.SLABICKI,J.PARK,R.P.NOWAK,S.S.ROY BURMAN,J.PELLMAN,C.ZOU, JRNL AUTH 2 H.RAZUMKOV,J.CARREIRO,S.RASTOGI,A.GOLDSTEIN,M.M.NAGIEC, JRNL AUTH 3 K.A.DONOVAN,J.CHE,M.HUNKELER,Q.GENG,C.L.HSU, JRNL AUTH 4 M.LAKSHMINARAYAN,C.SHU,R.L.ZON,Z.KOZICKA,P.M.C.PARK, JRNL AUTH 5 J.M.TSAI,H.YOON,L.H.JONES,A.S.SPERLING,N.S.GRAY,E.S.FISCHER, JRNL AUTH 6 B.L.EBERT JRNL TITL EXPANDING THE DRUGGABLE ZINC-FINGER PROTEOME DEFINES JRNL TITL 2 PROPERTIES OF DRUG-INDUCED DEGRADATION. JRNL REF MOL.CELL V. 85 3184 2025 JRNL REFN ISSN 1097-2765 JRNL PMID 40845806 JRNL DOI 10.1016/J.MOLCEL.2025.07.019 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : TOPAZ, SERIALEM, CRYOSPARC, UCSF REMARK 3 CHIMERAX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 8TNQ REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : SHARPENED AND UNSHARPENED MAPS PROCESSED BY REMARK 3 CRYOSPARC, IN ADDITION TO MAPS POST-PROCESSED WITH DEEPEMHANCER REMARK 3 (V0.16), WERE USED FOR MODEL BUILDING. MODELS OF DDB1DB:CRBN REMARK 3 (PDB: 8TNQ) AND SALL4(ZF3) (PDB: 8U17) WERE FIT INTO THE DENSITY REMARK 3 AS INDIVIDUAL CHAINS USING CHIMERAX (V1.6.1). MEZIGDOMIDE FROM A REMARK 3 MODEL OF DDB1:CRBN:MEZIGDOMIDE:IKZF1(ZF1-3) (PDB: 8D7Z) WAS REMARK 3 ADDED AFTER ALIGNING BOTH MODELS ON CRBN, AND RESIDUES OUTSIDE REMARK 3 OF SALL4(ZF3) WERE BUILT USING COOT (V0.9.8). A LIGAND RESTRAINT REMARK 3 FILE FOR MEZIGDOMIDE WAS GENERATED USING THE GRADE2 (V1.6.0), REMARK 3 AND THE ENTIRE MODEL WAS THEN RELAXED INTO THE DENSITY USING REMARK 3 ROSETTA (V3.13) FOLLOWED BY MANUAL ADJUSTMENT IN COOT. THE MODEL REMARK 3 WAS PREPARED FOR REFINEMENT USING PHENIX.READY_SET (V1.21-5207) REMARK 3 AND REFINED USING PHENIX.REAL_SPACE_REFINE (V1.21-5207). REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.700 REMARK 3 NUMBER OF PARTICLES : 539282 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: PARTICLES WERE RE-EXTRACTED AT 1.10 A/PIXEL, AND REMARK 3 SUBSEQUENTLY PROCESSED BY REFERENCE-BASED MOTION CORRECTION, REMARK 3 LOCAL CTF REFINEMENT (PER-PARTICLE DEFOCUS), AND GLOBAL CTF REMARK 3 REFINEMENT (PER-GROUP BEAM TILT AND TREFOIL). HOMOGENEOUS REMARK 3 REFINEMENT OF THESE PROCESSED PARTICLES FOLLOWED BY LOCAL REMARK 3 REFINEMENT WITH A MASK ENCOMPASSING THE FULL PARTICLE YIELDED A REMARK 3 FINAL RECONSTRUCTION AT 2.7 A. A LOCAL REFINEMENT USING A MASK REMARK 3 ENCOMPASSING THE CRBN:DRUG:ZF PORTION FURTHER IMPROVED DRUG AND REMARK 3 ZF DENSITY. REMARK 4 REMARK 4 9NWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1000289147. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF REMARK 245 DDB1DB:CRBN:MEZIGDOMIDE:SALL4(392-449) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : ULTRAUFOIL R 0.6/1 300 MESH REMARK 245 GRIDS WERE GLOW-DISCHARGED FOR REMARK 245 2 MIN AT 20 MA AND 39 PA, PRE- REMARK 245 INCUBATED WITH 4 UL OF 10 UM REMARK 245 FLAG-IKZF1(140-196;Q146A/G151N) REMARK 245 FOR 1 MIN, AND BLOTTED FROM REMARK 245 BEHIND FOR 4 S. 4 UL OF THE REMARK 245 SAMPLE WAS THEN APPLIED TO THE REMARK 245 GRID. GRIDS WERE VITRIFIED REMARK 245 USING AN EM GP PLUNGE FREEZER REMARK 245 OPERATED AT 90% HUMIDITY AND 10 REMARK 245 C WITH 0 S PRE-BLOT, 4 S BLOT, REMARK 245 AND 0 S POST-BLOT. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 3024 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS TALOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5170.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 36000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 348 REMARK 465 ASP C 349 REMARK 465 TRP C 350 REMARK 465 SER C 351 REMARK 465 HIS C 352 REMARK 465 PRO C 353 REMARK 465 GLN C 354 REMARK 465 PHE C 355 REMARK 465 GLU C 356 REMARK 465 LYS C 357 REMARK 465 SER C 358 REMARK 465 ALA C 359 REMARK 465 VAL C 360 REMARK 465 GLY C 361 REMARK 465 LEU C 362 REMARK 465 ASN C 363 REMARK 465 ASP C 364 REMARK 465 ILE C 365 REMARK 465 PHE C 366 REMARK 465 GLU C 367 REMARK 465 ALA C 368 REMARK 465 GLN C 369 REMARK 465 LYS C 370 REMARK 465 ILE C 371 REMARK 465 GLU C 372 REMARK 465 TRP C 373 REMARK 465 HIS C 374 REMARK 465 GLU C 375 REMARK 465 GLY C 376 REMARK 465 GLY C 377 REMARK 465 GLY C 378 REMARK 465 GLY C 379 REMARK 465 SER C 380 REMARK 465 GLY C 381 REMARK 465 GLU C 382 REMARK 465 ASN C 383 REMARK 465 LEU C 384 REMARK 465 TYR C 385 REMARK 465 PHE C 386 REMARK 465 GLN C 387 REMARK 465 GLY C 388 REMARK 465 GLY C 389 REMARK 465 GLY C 390 REMARK 465 ARG C 391 REMARK 465 GLY C 392 REMARK 465 THR C 393 REMARK 465 ASP C 394 REMARK 465 SER C 395 REMARK 465 SER C 396 REMARK 465 LEU C 397 REMARK 465 GLN C 398 REMARK 465 ILE C 399 REMARK 465 HIS C 400 REMARK 465 LEU C 401 REMARK 465 ARG C 402 REMARK 465 SER C 403 REMARK 465 HIS C 404 REMARK 465 THR C 405 REMARK 465 GLY C 406 REMARK 465 GLU C 407 REMARK 465 ARG C 408 REMARK 465 ASN C 438 REMARK 465 PRO C 439 REMARK 465 GLN C 440 REMARK 465 LEU C 441 REMARK 465 PHE C 442 REMARK 465 ALA C 443 REMARK 465 GLU C 444 REMARK 465 PHE C 445 REMARK 465 GLN C 446 REMARK 465 ASP C 447 REMARK 465 LYS C 448 REMARK 465 VAL C 449 REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 SER A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 ALA A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 GLU A -9 REMARK 465 ASN A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 465 MET A 291 REMARK 465 ASP A 292 REMARK 465 GLY A 293 REMARK 465 GLY A 697 REMARK 465 ILE A 698 REMARK 465 GLY A 699 REMARK 465 GLY A 700 REMARK 465 ASN A 701 REMARK 465 GLY A 702 REMARK 465 ASN A 703 REMARK 465 SER A 704 REMARK 465 GLY A 705 REMARK 465 GLU A 706 REMARK 465 ILE A 707 REMARK 465 GLN A 708 REMARK 465 SER A 772 REMARK 465 SER A 773 REMARK 465 SER A 774 REMARK 465 THR A 775 REMARK 465 ALA A 776 REMARK 465 PRO A 777 REMARK 465 HIS A 778 REMARK 465 GLU A 779 REMARK 465 ASN A 1016 REMARK 465 LEU A 1017 REMARK 465 GLY A 1018 REMARK 465 GLU A 1019 REMARK 465 THR A 1020 REMARK 465 SER A 1021 REMARK 465 ASP A 1115 REMARK 465 ASP A 1116 REMARK 465 GLY A 1117 REMARK 465 SER A 1118 REMARK 465 GLY A 1119 REMARK 465 MET A 1120 REMARK 465 MET B -42 REMARK 465 ASP B -41 REMARK 465 TYR B -40 REMARK 465 LYS B -39 REMARK 465 ASP B -38 REMARK 465 ASP B -37 REMARK 465 ASP B -36 REMARK 465 ASP B -35 REMARK 465 LYS B -34 REMARK 465 SER B -33 REMARK 465 ALA B -32 REMARK 465 VAL B -31 REMARK 465 ASP B -30 REMARK 465 GLU B -29 REMARK 465 ASN B -28 REMARK 465 LEU B -27 REMARK 465 TYR B -26 REMARK 465 PHE B -25 REMARK 465 GLN B -24 REMARK 465 GLY B -23 REMARK 465 GLY B -22 REMARK 465 GLY B -21 REMARK 465 ARG B -20 REMARK 465 GLY B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 ALA B -16 REMARK 465 HIS B -15 REMARK 465 ILE B -14 REMARK 465 VAL B -13 REMARK 465 MET B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 ALA B -9 REMARK 465 TYR B -8 REMARK 465 LYS B -7 REMARK 465 PRO B -6 REMARK 465 THR B -5 REMARK 465 LYS B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 GLY B 5 REMARK 465 ASP B 6 REMARK 465 GLN B 7 REMARK 465 GLN B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 HIS B 12 REMARK 465 ASN B 13 REMARK 465 MET B 14 REMARK 465 GLY B 15 REMARK 465 ASN B 16 REMARK 465 HIS B 17 REMARK 465 LEU B 18 REMARK 465 PRO B 19 REMARK 465 LEU B 20 REMARK 465 LEU B 21 REMARK 465 PRO B 22 REMARK 465 ALA B 23 REMARK 465 GLU B 24 REMARK 465 SER B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 30 REMARK 465 MET B 31 REMARK 465 GLU B 32 REMARK 465 VAL B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 465 GLN B 36 REMARK 465 ASP B 37 REMARK 465 SER B 38 REMARK 465 LYS B 39 REMARK 465 GLU B 40 REMARK 465 ALA B 41 REMARK 465 LYS B 42 REMARK 465 LYS B 43 REMARK 465 PRO B 44 REMARK 465 ASN B 45 REMARK 465 ILE B 46 REMARK 465 VAL B 213 REMARK 465 SER B 214 REMARK 465 ARG B 215 REMARK 465 GLU B 216 REMARK 465 ASP B 217 REMARK 465 GLN B 218 REMARK 465 CYS B 219 REMARK 465 ILE B 426 REMARK 465 PRO B 427 REMARK 465 ASP B 428 REMARK 465 THR B 429 REMARK 465 GLU B 430 REMARK 465 ASP B 431 REMARK 465 GLU B 432 REMARK 465 ILE B 433 REMARK 465 SER B 434 REMARK 465 PRO B 435 REMARK 465 ASP B 436 REMARK 465 LYS B 437 REMARK 465 VAL B 438 REMARK 465 ILE B 439 REMARK 465 LEU B 440 REMARK 465 CYS B 441 REMARK 465 LEU B 442 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 275 H ARG A 279 1.52 REMARK 500 H THR B 71 OE2 GLU B 140 1.58 REMARK 500 H THR A 24 OD1 ASN A 30 1.58 REMARK 500 OD1 ASP A 744 H THR A 745 1.59 REMARK 500 OE2 GLU A 811 HG1 THR A 833 1.60 REMARK 500 O LEU A 1093 HG SER A 1096 1.60 REMARK 500 OE1 GLU A 741 OG1 THR A 749 2.15 REMARK 500 OD1 ASP A 986 NH2 ARG A 989 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 37 -2.25 73.50 REMARK 500 TYR A 84 37.30 71.20 REMARK 500 LEU A 145 51.47 -97.72 REMARK 500 PRO A 223 -176.00 -69.47 REMARK 500 VAL A 264 -63.97 -98.13 REMARK 500 PHE A 382 -137.48 55.26 REMARK 500 ASN A 885 -116.02 56.77 REMARK 500 THR A 984 -4.53 75.67 REMARK 500 THR B 58 -5.17 72.21 REMARK 500 LEU B 60 53.11 -91.01 REMARK 500 GLN B 86 -0.59 68.42 REMARK 500 ASP B 117 -18.30 74.72 REMARK 500 LEU B 202 44.92 -87.19 REMARK 500 CYS B 234 -7.32 -59.35 REMARK 500 THR B 319 -122.47 38.92 REMARK 500 GLU B 328 -50.96 -127.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 412 SG REMARK 620 2 CYS C 415 SG 114.9 REMARK 620 3 HIS C 428 NE2 103.1 74.8 REMARK 620 4 HIS C 432 NE2 113.8 131.4 95.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 323 SG REMARK 620 2 CYS B 326 SG 107.1 REMARK 620 3 CYS B 391 SG 105.0 113.5 REMARK 620 4 CYS B 394 SG 114.5 103.4 113.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-49892 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF DDB1DB:CRBN:MEZIGDOMIDE:SALL4(392-449) DBREF 9NWS C 392 449 UNP Q9UJQ4 SALL4_HUMAN 392 449 DBREF 9NWS A 1 699 UNP Q16531 DDB1_HUMAN 1 395 DBREF 9NWS A 706 1140 UNP Q16531 DDB1_HUMAN 706 1140 DBREF 9NWS B 1 442 UNP Q96SW2 CRBN_HUMAN 1 442 SEQADV 9NWS MET C 348 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ASP C 349 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS TRP C 350 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS SER C 351 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS HIS C 352 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS PRO C 353 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLN C 354 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS PHE C 355 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLU C 356 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS LYS C 357 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS SER C 358 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ALA C 359 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS VAL C 360 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 361 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS LEU C 362 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ASN C 363 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ASP C 364 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ILE C 365 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS PHE C 366 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLU C 367 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ALA C 368 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLN C 369 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS LYS C 370 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ILE C 371 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLU C 372 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS TRP C 373 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS HIS C 374 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLU C 375 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 376 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 377 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 378 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 379 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS SER C 380 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 381 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLU C 382 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ASN C 383 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS LEU C 384 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS TYR C 385 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS PHE C 386 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLN C 387 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 388 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 389 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS GLY C 390 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS ARG C 391 UNP Q9UJQ4 EXPRESSION TAG SEQADV 9NWS MET A -23 UNP Q16531 EXPRESSION TAG SEQADV 9NWS GLY A -22 UNP Q16531 EXPRESSION TAG SEQADV 9NWS SER A -21 UNP Q16531 EXPRESSION TAG SEQADV 9NWS SER A -20 UNP Q16531 EXPRESSION TAG SEQADV 9NWS HIS A -19 UNP Q16531 EXPRESSION TAG SEQADV 9NWS HIS A -18 UNP Q16531 EXPRESSION TAG SEQADV 9NWS HIS A -17 UNP Q16531 EXPRESSION TAG SEQADV 9NWS HIS A -16 UNP Q16531 EXPRESSION TAG SEQADV 9NWS HIS A -15 UNP Q16531 EXPRESSION TAG SEQADV 9NWS HIS A -14 UNP Q16531 EXPRESSION TAG SEQADV 9NWS SER A -13 UNP Q16531 EXPRESSION TAG SEQADV 9NWS ALA A -12 UNP Q16531 EXPRESSION TAG SEQADV 9NWS VAL A -11 UNP Q16531 EXPRESSION TAG SEQADV 9NWS ASP A -10 UNP Q16531 EXPRESSION TAG SEQADV 9NWS GLU A -9 UNP Q16531 EXPRESSION TAG SEQADV 9NWS ASN A -8 UNP Q16531 EXPRESSION TAG SEQADV 9NWS LEU A -7 UNP Q16531 EXPRESSION TAG SEQADV 9NWS TYR A -6 UNP Q16531 EXPRESSION TAG SEQADV 9NWS PHE A -5 UNP Q16531 EXPRESSION TAG SEQADV 9NWS GLN A -4 UNP Q16531 EXPRESSION TAG SEQADV 9NWS GLY A -3 UNP Q16531 EXPRESSION TAG SEQADV 9NWS GLY A -2 UNP Q16531 EXPRESSION TAG SEQADV 9NWS GLY A -1 UNP Q16531 EXPRESSION TAG SEQADV 9NWS ARG A 0 UNP Q16531 EXPRESSION TAG SEQADV 9NWS GLY A 700 UNP Q16531 LINKER SEQADV 9NWS ASN A 701 UNP Q16531 LINKER SEQADV 9NWS GLY A 702 UNP Q16531 LINKER SEQADV 9NWS ASN A 703 UNP Q16531 LINKER SEQADV 9NWS SER A 704 UNP Q16531 LINKER SEQADV 9NWS GLY A 705 UNP Q16531 LINKER SEQADV 9NWS MET B -42 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ASP B -41 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS TYR B -40 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS LYS B -39 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ASP B -38 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ASP B -37 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ASP B -36 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ASP B -35 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS LYS B -34 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS SER B -33 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ALA B -32 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS VAL B -31 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ASP B -30 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLU B -29 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ASN B -28 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS LEU B -27 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS TYR B -26 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS PHE B -25 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLN B -24 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLY B -23 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLY B -22 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLY B -21 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ARG B -20 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLY B -19 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLY B -18 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS SER B -17 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ALA B -16 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS HIS B -15 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ILE B -14 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS VAL B -13 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS MET B -12 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS VAL B -11 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ASP B -10 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS ALA B -9 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS TYR B -8 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS LYS B -7 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS PRO B -6 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS THR B -5 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS LYS B -4 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLY B -3 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLY B -2 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS SER B -1 UNP Q96SW2 EXPRESSION TAG SEQADV 9NWS GLY B 0 UNP Q96SW2 EXPRESSION TAG SEQRES 1 C 102 MET ASP TRP SER HIS PRO GLN PHE GLU LYS SER ALA VAL SEQRES 2 C 102 GLY LEU ASN ASP ILE PHE GLU ALA GLN LYS ILE GLU TRP SEQRES 3 C 102 HIS GLU GLY GLY GLY GLY SER GLY GLU ASN LEU TYR PHE SEQRES 4 C 102 GLN GLY GLY GLY ARG GLY THR ASP SER SER LEU GLN ILE SEQRES 5 C 102 HIS LEU ARG SER HIS THR GLY GLU ARG PRO PHE VAL CYS SEQRES 6 C 102 SER VAL CYS GLY HIS ARG PHE THR THR LYS GLY ASN LEU SEQRES 7 C 102 LYS VAL HIS PHE HIS ARG HIS PRO GLN VAL LYS ALA ASN SEQRES 8 C 102 PRO GLN LEU PHE ALA GLU PHE GLN ASP LYS VAL SEQRES 1 A 860 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER ALA VAL SEQRES 2 A 860 ASP GLU ASN LEU TYR PHE GLN GLY GLY GLY ARG MET SER SEQRES 3 A 860 TYR ASN TYR VAL VAL THR ALA GLN LYS PRO THR ALA VAL SEQRES 4 A 860 ASN GLY CYS VAL THR GLY HIS PHE THR SER ALA GLU ASP SEQRES 5 A 860 LEU ASN LEU LEU ILE ALA LYS ASN THR ARG LEU GLU ILE SEQRES 6 A 860 TYR VAL VAL THR ALA GLU GLY LEU ARG PRO VAL LYS GLU SEQRES 7 A 860 VAL GLY MET TYR GLY LYS ILE ALA VAL MET GLU LEU PHE SEQRES 8 A 860 ARG PRO LYS GLY GLU SER LYS ASP LEU LEU PHE ILE LEU SEQRES 9 A 860 THR ALA LYS TYR ASN ALA CYS ILE LEU GLU TYR LYS GLN SEQRES 10 A 860 SER GLY GLU SER ILE ASP ILE ILE THR ARG ALA HIS GLY SEQRES 11 A 860 ASN VAL GLN ASP ARG ILE GLY ARG PRO SER GLU THR GLY SEQRES 12 A 860 ILE ILE GLY ILE ILE ASP PRO GLU CYS ARG MET ILE GLY SEQRES 13 A 860 LEU ARG LEU TYR ASP GLY LEU PHE LYS VAL ILE PRO LEU SEQRES 14 A 860 ASP ARG ASP ASN LYS GLU LEU LYS ALA PHE ASN ILE ARG SEQRES 15 A 860 LEU GLU GLU LEU HIS VAL ILE ASP VAL LYS PHE LEU TYR SEQRES 16 A 860 GLY CYS GLN ALA PRO THR ILE CYS PHE VAL TYR GLN ASP SEQRES 17 A 860 PRO GLN GLY ARG HIS VAL LYS THR TYR GLU VAL SER LEU SEQRES 18 A 860 ARG GLU LYS GLU PHE ASN LYS GLY PRO TRP LYS GLN GLU SEQRES 19 A 860 ASN VAL GLU ALA GLU ALA SER MET VAL ILE ALA VAL PRO SEQRES 20 A 860 GLU PRO PHE GLY GLY ALA ILE ILE ILE GLY GLN GLU SER SEQRES 21 A 860 ILE THR TYR HIS ASN GLY ASP LYS TYR LEU ALA ILE ALA SEQRES 22 A 860 PRO PRO ILE ILE LYS GLN SER THR ILE VAL CYS HIS ASN SEQRES 23 A 860 ARG VAL ASP PRO ASN GLY SER ARG TYR LEU LEU GLY ASP SEQRES 24 A 860 MET GLU GLY ARG LEU PHE MET LEU LEU LEU GLU LYS GLU SEQRES 25 A 860 GLU GLN MET ASP GLY THR VAL THR LEU LYS ASP LEU ARG SEQRES 26 A 860 VAL GLU LEU LEU GLY GLU THR SER ILE ALA GLU CYS LEU SEQRES 27 A 860 THR TYR LEU ASP ASN GLY VAL VAL PHE VAL GLY SER ARG SEQRES 28 A 860 LEU GLY ASP SER GLN LEU VAL LYS LEU ASN VAL ASP SER SEQRES 29 A 860 ASN GLU GLN GLY SER TYR VAL VAL ALA MET GLU THR PHE SEQRES 30 A 860 THR ASN LEU GLY PRO ILE VAL ASP MET CYS VAL VAL ASP SEQRES 31 A 860 LEU GLU ARG GLN GLY GLN GLY GLN LEU VAL THR CYS SER SEQRES 32 A 860 GLY ALA PHE LYS GLU GLY SER LEU ARG ILE ILE ARG ASN SEQRES 33 A 860 GLY ILE GLY GLY ASN GLY ASN SER GLY GLU ILE GLN LYS SEQRES 34 A 860 LEU HIS ILE ARG THR VAL PRO LEU TYR GLU SER PRO ARG SEQRES 35 A 860 LYS ILE CYS TYR GLN GLU VAL SER GLN CYS PHE GLY VAL SEQRES 36 A 860 LEU SER SER ARG ILE GLU VAL GLN ASP THR SER GLY GLY SEQRES 37 A 860 THR THR ALA LEU ARG PRO SER ALA SER THR GLN ALA LEU SEQRES 38 A 860 SER SER SER VAL SER SER SER LYS LEU PHE SER SER SER SEQRES 39 A 860 THR ALA PRO HIS GLU THR SER PHE GLY GLU GLU VAL GLU SEQRES 40 A 860 VAL HIS ASN LEU LEU ILE ILE ASP GLN HIS THR PHE GLU SEQRES 41 A 860 VAL LEU HIS ALA HIS GLN PHE LEU GLN ASN GLU TYR ALA SEQRES 42 A 860 LEU SER LEU VAL SER CYS LYS LEU GLY LYS ASP PRO ASN SEQRES 43 A 860 THR TYR PHE ILE VAL GLY THR ALA MET VAL TYR PRO GLU SEQRES 44 A 860 GLU ALA GLU PRO LYS GLN GLY ARG ILE VAL VAL PHE GLN SEQRES 45 A 860 TYR SER ASP GLY LYS LEU GLN THR VAL ALA GLU LYS GLU SEQRES 46 A 860 VAL LYS GLY ALA VAL TYR SER MET VAL GLU PHE ASN GLY SEQRES 47 A 860 LYS LEU LEU ALA SER ILE ASN SER THR VAL ARG LEU TYR SEQRES 48 A 860 GLU TRP THR THR GLU LYS GLU LEU ARG THR GLU CYS ASN SEQRES 49 A 860 HIS TYR ASN ASN ILE MET ALA LEU TYR LEU LYS THR LYS SEQRES 50 A 860 GLY ASP PHE ILE LEU VAL GLY ASP LEU MET ARG SER VAL SEQRES 51 A 860 LEU LEU LEU ALA TYR LYS PRO MET GLU GLY ASN PHE GLU SEQRES 52 A 860 GLU ILE ALA ARG ASP PHE ASN PRO ASN TRP MET SER ALA SEQRES 53 A 860 VAL GLU ILE LEU ASP ASP ASP ASN PHE LEU GLY ALA GLU SEQRES 54 A 860 ASN ALA PHE ASN LEU PHE VAL CYS GLN LYS ASP SER ALA SEQRES 55 A 860 ALA THR THR ASP GLU GLU ARG GLN HIS LEU GLN GLU VAL SEQRES 56 A 860 GLY LEU PHE HIS LEU GLY GLU PHE VAL ASN VAL PHE CYS SEQRES 57 A 860 HIS GLY SER LEU VAL MET GLN ASN LEU GLY GLU THR SER SEQRES 58 A 860 THR PRO THR GLN GLY SER VAL LEU PHE GLY THR VAL ASN SEQRES 59 A 860 GLY MET ILE GLY LEU VAL THR SER LEU SER GLU SER TRP SEQRES 60 A 860 TYR ASN LEU LEU LEU ASP MET GLN ASN ARG LEU ASN LYS SEQRES 61 A 860 VAL ILE LYS SER VAL GLY LYS ILE GLU HIS SER PHE TRP SEQRES 62 A 860 ARG SER PHE HIS THR GLU ARG LYS THR GLU PRO ALA THR SEQRES 63 A 860 GLY PHE ILE ASP GLY ASP LEU ILE GLU SER PHE LEU ASP SEQRES 64 A 860 ILE SER ARG PRO LYS MET GLN GLU VAL VAL ALA ASN LEU SEQRES 65 A 860 GLN TYR ASP ASP GLY SER GLY MET LYS ARG GLU ALA THR SEQRES 66 A 860 ALA ASP ASP LEU ILE LYS VAL VAL GLU GLU LEU THR ARG SEQRES 67 A 860 ILE HIS SEQRES 1 B 485 MET ASP TYR LYS ASP ASP ASP ASP LYS SER ALA VAL ASP SEQRES 2 B 485 GLU ASN LEU TYR PHE GLN GLY GLY GLY ARG GLY GLY SER SEQRES 3 B 485 ALA HIS ILE VAL MET VAL ASP ALA TYR LYS PRO THR LYS SEQRES 4 B 485 GLY GLY SER GLY MET ALA GLY GLU GLY ASP GLN GLN ASP SEQRES 5 B 485 ALA ALA HIS ASN MET GLY ASN HIS LEU PRO LEU LEU PRO SEQRES 6 B 485 ALA GLU SER GLU GLU GLU ASP GLU MET GLU VAL GLU ASP SEQRES 7 B 485 GLN ASP SER LYS GLU ALA LYS LYS PRO ASN ILE ILE ASN SEQRES 8 B 485 PHE ASP THR SER LEU PRO THR SER HIS THR TYR LEU GLY SEQRES 9 B 485 ALA ASP MET GLU GLU PHE HIS GLY ARG THR LEU HIS ASP SEQRES 10 B 485 ASP ASP SER CYS GLN VAL ILE PRO VAL LEU PRO GLN VAL SEQRES 11 B 485 MET MET ILE LEU ILE PRO GLY GLN THR LEU PRO LEU GLN SEQRES 12 B 485 LEU PHE HIS PRO GLN GLU VAL SER MET VAL ARG ASN LEU SEQRES 13 B 485 ILE GLN LYS ASP ARG THR PHE ALA VAL LEU ALA TYR SER SEQRES 14 B 485 ASN VAL GLN GLU ARG GLU ALA GLN PHE GLY THR THR ALA SEQRES 15 B 485 GLU ILE TYR ALA TYR ARG GLU GLU GLN ASP PHE GLY ILE SEQRES 16 B 485 GLU ILE VAL LYS VAL LYS ALA ILE GLY ARG GLN ARG PHE SEQRES 17 B 485 LYS VAL LEU GLU LEU ARG THR GLN SER ASP GLY ILE GLN SEQRES 18 B 485 GLN ALA LYS VAL GLN ILE LEU PRO GLU CYS VAL LEU PRO SEQRES 19 B 485 SER THR MET SER ALA VAL GLN LEU GLU SER LEU ASN LYS SEQRES 20 B 485 CYS GLN ILE PHE PRO SER LYS PRO VAL SER ARG GLU ASP SEQRES 21 B 485 GLN CYS SER TYR LYS TRP TRP GLN LYS TYR GLN LYS ARG SEQRES 22 B 485 LYS PHE HIS CYS ALA ASN LEU THR SER TRP PRO ARG TRP SEQRES 23 B 485 LEU TYR SER LEU TYR ASP ALA GLU THR LEU MET ASP ARG SEQRES 24 B 485 ILE LYS LYS GLN LEU ARG GLU TRP ASP GLU ASN LEU LYS SEQRES 25 B 485 ASP ASP SER LEU PRO SER ASN PRO ILE ASP PHE SER TYR SEQRES 26 B 485 ARG VAL ALA ALA CYS LEU PRO ILE ASP ASP VAL LEU ARG SEQRES 27 B 485 ILE GLN LEU LEU LYS ILE GLY SER ALA ILE GLN ARG LEU SEQRES 28 B 485 ARG CYS GLU LEU ASP ILE MET ASN LYS CYS THR SER LEU SEQRES 29 B 485 CYS CYS LYS GLN CYS GLN GLU THR GLU ILE THR THR LYS SEQRES 30 B 485 ASN GLU ILE PHE SER LEU SER LEU CYS GLY PRO MET ALA SEQRES 31 B 485 ALA TYR VAL ASN PRO HIS GLY TYR VAL HIS GLU THR LEU SEQRES 32 B 485 THR VAL TYR LYS ALA CYS ASN LEU ASN LEU ILE GLY ARG SEQRES 33 B 485 PRO SER THR GLU HIS SER TRP PHE PRO GLY TYR ALA TRP SEQRES 34 B 485 THR VAL ALA GLN CYS LYS ILE CYS ALA SER HIS ILE GLY SEQRES 35 B 485 TRP LYS PHE THR ALA THR LYS LYS ASP MET SER PRO GLN SEQRES 36 B 485 LYS PHE TRP GLY LEU THR ARG SER ALA LEU LEU PRO THR SEQRES 37 B 485 ILE PRO ASP THR GLU ASP GLU ILE SER PRO ASP LYS VAL SEQRES 38 B 485 ILE LEU CYS LEU HET ZN C 501 1 HET ZN B 501 1 HET QFC B 502 62 HETNAM ZN ZINC ION HETNAM QFC MEZIGDOMIDE FORMUL 4 ZN 2(ZN 2+) FORMUL 6 QFC C32 H30 F N5 O4 HELIX 1 AA1 THR C 421 HIS C 432 1 12 HELIX 2 AA2 HIS C 432 ALA C 437 1 6 HELIX 3 AA3 PRO A 250 LYS A 254 5 5 HELIX 4 AA4 ALA A 381 GLU A 384 5 4 HELIX 5 AA5 SER A 755 GLN A 759 5 5 HELIX 6 AA6 THR A 985 GLN A 990 1 6 HELIX 7 AA7 SER A 1044 ASN A 1059 1 16 HELIX 8 AA8 GLU A 1069 SER A 1075 1 7 HELIX 9 AA9 GLY A 1091 SER A 1096 1 6 HELIX 10 AB1 PHE A 1097 ASP A 1099 5 3 HELIX 11 AB2 SER A 1101 ALA A 1110 1 10 HELIX 12 AB3 THR A 1125 ARG A 1138 1 14 HELIX 13 AB4 HIS B 103 GLN B 115 1 13 HELIX 14 AB5 SER B 192 ALA B 196 5 5 HELIX 15 AB6 GLU B 200 LYS B 204 5 5 HELIX 16 AB7 TYR B 221 PHE B 232 1 12 HELIX 17 AB8 HIS B 233 THR B 238 5 6 HELIX 18 AB9 PRO B 241 TYR B 248 1 8 HELIX 19 AC1 ASP B 249 GLU B 263 1 15 HELIX 20 AC2 LYS B 269 LEU B 273 5 5 HELIX 21 AC3 ASN B 276 LEU B 288 1 13 HELIX 22 AC4 ASP B 291 ILE B 301 1 11 HELIX 23 AC5 SER B 303 LYS B 317 1 15 HELIX 24 AC6 ASN B 335 ILE B 337 5 3 SHEET 1 AA1 2 PHE C 410 VAL C 411 0 SHEET 2 AA1 2 ARG C 418 PHE C 419 -1 O PHE C 419 N PHE C 410 SHEET 1 AA2 5 VAL A1004 HIS A1009 0 SHEET 2 AA2 5 GLN A1025 THR A1032 -1 O GLY A1031 N ASN A1005 SHEET 3 AA2 5 ILE A1037 SER A1042 -1 O GLY A1038 N PHE A1030 SHEET 4 AA2 5 ASN A 4 GLN A 10 -1 N VAL A 7 O LEU A1039 SHEET 5 AA2 5 PHE A1088 ASP A1090 1 O ILE A1089 N VAL A 6 SHEET 1 AA3 4 VAL A 15 GLY A 21 0 SHEET 2 AA3 4 ASN A 30 LYS A 35 -1 O LEU A 32 N VAL A 19 SHEET 3 AA3 4 ARG A 38 VAL A 44 -1 O TYR A 42 N LEU A 31 SHEET 4 AA3 4 LEU A 49 GLY A 56 -1 O LYS A 53 N ILE A 41 SHEET 1 AA4 4 ILE A 61 PHE A 67 0 SHEET 2 AA4 4 LEU A 76 THR A 81 -1 O LEU A 76 N PHE A 67 SHEET 3 AA4 4 ASN A 85 SER A 94 -1 O LEU A 89 N LEU A 77 SHEET 4 AA4 4 SER A 97 ASN A 107 -1 O ILE A 101 N GLU A 90 SHEET 1 AA5 4 ILE A 121 ILE A 124 0 SHEET 2 AA5 4 MET A 130 ARG A 134 -1 O GLY A 132 N ILE A 123 SHEET 3 AA5 4 LEU A 139 PRO A 144 -1 O LYS A 141 N LEU A 133 SHEET 4 AA5 4 PHE A 155 ARG A 158 -1 O PHE A 155 N VAL A 142 SHEET 1 AA6 4 VAL A 164 PHE A 169 0 SHEET 2 AA6 4 THR A 177 ASP A 184 -1 O CYS A 179 N LYS A 168 SHEET 3 AA6 4 GLY A 187 SER A 196 -1 O TYR A 193 N ILE A 178 SHEET 4 AA6 4 GLU A 201 LYS A 204 -1 O GLU A 201 N SER A 196 SHEET 1 AA7 4 VAL A 164 PHE A 169 0 SHEET 2 AA7 4 THR A 177 ASP A 184 -1 O CYS A 179 N LYS A 168 SHEET 3 AA7 4 GLY A 187 SER A 196 -1 O TYR A 193 N ILE A 178 SHEET 4 AA7 4 GLU A 210 ASN A 211 -1 O GLU A 210 N VAL A 190 SHEET 1 AA8 4 MET A 218 ALA A 221 0 SHEET 2 AA8 4 ALA A 229 ILE A 232 -1 O ILE A 232 N MET A 218 SHEET 3 AA8 4 ILE A 237 ASN A 241 -1 O HIS A 240 N ALA A 229 SHEET 4 AA8 4 LYS A 244 ILE A 248 -1 O LYS A 244 N ASN A 241 SHEET 1 AA9 4 ILE A 258 ARG A 263 0 SHEET 2 AA9 4 ARG A 270 ASP A 275 -1 O GLY A 274 N CYS A 260 SHEET 3 AA9 4 ARG A 279 GLU A 288 -1 O PHE A 281 N LEU A 273 SHEET 4 AA9 4 THR A 296 GLU A 307 -1 O ASP A 299 N GLU A 286 SHEET 1 AB1 4 CYS A 313 ASP A 318 0 SHEET 2 AB1 4 VAL A 321 GLY A 325 -1 O PHE A 323 N THR A 315 SHEET 3 AB1 4 SER A 331 LEU A 336 -1 O GLN A 332 N VAL A 324 SHEET 4 AB1 4 VAL A 347 PHE A 353 -1 O VAL A 348 N LYS A 335 SHEET 1 AB2 4 ILE A 359 VAL A 365 0 SHEET 2 AB2 4 GLN A 374 SER A 379 -1 O GLN A 374 N VAL A 365 SHEET 3 AB2 4 SER A 386 ARG A 391 -1 O ILE A 390 N LEU A 375 SHEET 4 AB2 4 HIS A 711 PRO A 716 -1 O ARG A 713 N ILE A 389 SHEET 1 AB3 3 SER A 720 GLN A 727 0 SHEET 2 AB3 3 CYS A 732 GLN A 743 -1 O GLY A 734 N CYS A 725 SHEET 3 AB3 3 THR A 749 ALA A 751 -1 O THR A 750 N VAL A 742 SHEET 1 AB4 5 SER A 720 GLN A 727 0 SHEET 2 AB4 5 CYS A 732 GLN A 743 -1 O GLY A 734 N CYS A 725 SHEET 3 AB4 5 GLU A 785 ASP A 795 -1 O LEU A 792 N VAL A 735 SHEET 4 AB4 5 VAL A 801 GLN A 806 -1 O HIS A 805 N LEU A 791 SHEET 5 AB4 5 SER A 762 VAL A 765 1 N SER A 764 O GLN A 806 SHEET 1 AB5 4 GLU A 811 CYS A 819 0 SHEET 2 AB5 4 TYR A 828 MET A 835 -1 O ILE A 830 N VAL A 817 SHEET 3 AB5 4 GLY A 846 SER A 854 -1 O PHE A 851 N PHE A 829 SHEET 4 AB5 4 LYS A 857 VAL A 866 -1 O ALA A 862 N VAL A 850 SHEET 1 AB6 4 VAL A 870 PHE A 876 0 SHEET 2 AB6 4 LYS A 879 ILE A 884 -1 O LEU A 881 N VAL A 874 SHEET 3 AB6 4 THR A 887 TRP A 893 -1 O TYR A 891 N LEU A 880 SHEET 4 AB6 4 LEU A 899 TYR A 906 -1 O GLU A 902 N LEU A 890 SHEET 1 AB7 4 TYR A 913 LYS A 917 0 SHEET 2 AB7 4 PHE A 920 GLY A 924 -1 O LEU A 922 N LYS A 915 SHEET 3 AB7 4 SER A 929 LYS A 936 -1 O LEU A 933 N ILE A 921 SHEET 4 AB7 4 ASN A 941 PHE A 949 -1 O ALA A 946 N LEU A 932 SHEET 1 AB8 4 MET A 954 ILE A 959 0 SHEET 2 AB8 4 ASN A 964 GLU A 969 -1 O ALA A 968 N ALA A 956 SHEET 3 AB8 4 ASN A 973 LYS A 979 -1 O CYS A 977 N PHE A 965 SHEET 4 AB8 4 LEU A 992 HIS A 999 -1 O PHE A 998 N LEU A 974 SHEET 1 AB9 2 PHE A1076 THR A1078 0 SHEET 2 AB9 2 LYS A1081 GLU A1083 -1 O LYS A1081 N THR A1078 SHEET 1 AC1 4 CYS B 78 ILE B 81 0 SHEET 2 AC1 4 ALA B 180 ILE B 184 -1 O ALA B 180 N ILE B 81 SHEET 3 AC1 4 ILE B 152 LEU B 170 -1 N LEU B 168 O LYS B 181 SHEET 4 AC1 4 THR B 96 LEU B 101 -1 N LEU B 97 O ALA B 159 SHEET 1 AC2 5 CYS B 78 ILE B 81 0 SHEET 2 AC2 5 ALA B 180 ILE B 184 -1 O ALA B 180 N ILE B 81 SHEET 3 AC2 5 ILE B 152 LEU B 170 -1 N LEU B 168 O LYS B 181 SHEET 4 AC2 5 PHE B 135 ASP B 149 -1 N THR B 138 O GLN B 163 SHEET 5 AC2 5 THR B 119 LEU B 123 -1 N PHE B 120 O ALA B 139 SHEET 1 AC3 3 GLU B 330 THR B 333 0 SHEET 2 AC3 3 SER B 320 CYS B 323 -1 N LEU B 321 O THR B 332 SHEET 3 AC3 3 LEU B 422 PRO B 424 -1 O LEU B 423 N CYS B 322 SHEET 1 AC4 6 MET B 346 VAL B 350 0 SHEET 2 AC4 6 VAL B 356 VAL B 362 -1 O THR B 359 N ALA B 347 SHEET 3 AC4 6 LYS B 413 THR B 418 -1 O TRP B 415 N VAL B 362 SHEET 4 AC4 6 HIS B 397 THR B 403 -1 N TRP B 400 O GLY B 416 SHEET 5 AC4 6 TRP B 386 CYS B 391 -1 N ALA B 389 O ILE B 398 SHEET 6 AC4 6 LEU B 368 SER B 375 -1 N ASN B 369 O GLN B 390 LINK SG CYS C 412 ZN ZN C 501 1555 1555 2.30 LINK SG CYS C 415 ZN ZN C 501 1555 1555 2.30 LINK NE2 HIS C 428 ZN ZN C 501 1555 1555 2.02 LINK NE2 HIS C 432 ZN ZN C 501 1555 1555 2.01 LINK SG CYS B 323 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 326 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 391 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 394 ZN ZN B 501 1555 1555 2.33 CISPEP 1 GLU A 224 PRO A 225 0 0.71 CISPEP 2 GLY A 357 PRO A 358 0 -4.92 CISPEP 3 SER B 410 PRO B 411 0 -4.94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 5619094 CONECT 9319094 CONECT 30319094 CONECT 38119094 CONECT1749119095 CONECT1754019095 CONECT1853719095 CONECT1858819095 CONECT19094 56 93 303 381 CONECT1909517491175401853718588 CONECT19096191011910219127 CONECT190971911119125 CONECT190981909919128 CONECT19099190981911319114 CONECT191001910119113 CONECT191011909619100 CONECT191021909619131 CONECT19103191171913119138 CONECT1910419115191181913919140 CONECT19105191191912019141 CONECT19106191201912119142 CONECT1910719108191331914319144 CONECT19108191071911919121 CONECT1910919111191241913319145 CONECT1911019124191251914619147 CONECT19111190971910919137 CONECT19112191261913119148 CONECT19113190991910019129 CONECT19114190991911619132 CONECT191151910419119 CONECT191161911419123 CONECT19117191031911819149 CONECT19118191041911719126 CONECT19119191051910819115 CONECT19120191051910619150 CONECT19121191061910819122 CONECT19122191211913319135 CONECT19123191161912819130 CONECT1912419109191101915119152 CONECT19125190971911019136 CONECT19126191121911819153 CONECT1912719096191291915419155 CONECT191281909819123 CONECT1912919113191271915619157 CONECT191301912319134 CONECT19131191021910319112 CONECT1913219114 CONECT19133191071910919122 CONECT1913419130 CONECT1913519122 CONECT1913619125 CONECT1913719111 CONECT1913819103 CONECT1913919104 CONECT1914019104 CONECT1914119105 CONECT1914219106 CONECT1914319107 CONECT1914419107 CONECT1914519109 CONECT1914619110 CONECT1914719110 CONECT1914819112 CONECT1914919117 CONECT1915019120 CONECT1915119124 CONECT1915219124 CONECT1915319126 CONECT1915419127 CONECT1915519127 CONECT1915619129 CONECT1915719129 MASTER 458 0 3 24 87 0 0 6 9599 3 72 113 END