data_9NYX # _entry.id 9NYX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9NYX pdb_00009nyx 10.2210/pdb9nyx/pdb WWPDB D_1000294427 ? ? EMDB EMD-49945 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-02-04 ? 2 'EM metadata' 1 0 2026-02-04 ? 3 'Half map' 1 0 2026-02-04 1 4 'Half map' 1 0 2026-02-04 2 5 Image 1 0 2026-02-04 ? 6 'Primary map' 1 0 2026-02-04 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9NYX _pdbx_database_status.recvd_initial_deposition_date 2025-03-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State' _pdbx_database_related.db_id EMD-49945 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email djt36@case.edu _pdbx_contact_author.name_first Derek _pdbx_contact_author.name_last Taylor _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9932-1856 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, W.' 1 ? 'Salom-Arbona, D.' 2 ? 'Suder, D.' 3 ? 'Taylor, D.J.' 4 ? 'Palczewski, K.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2532336123 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, W.' 1 ? primary 'Salom, D.' 2 ? primary 'Suder, D.S.' 3 ? primary 'Taylor, D.J.' 4 ? primary 'Palczewski, K.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Megabody 7' 13035.657 2 ? ? ? ? 2 polymer nat Rhodopsin 36466.734 2 ? ? ? ? 3 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 2 ? ? ? ? 4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ? 5 non-polymer syn RETINAL 284.436 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VQLVESGGGLV(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)SLRLSCAASGFTFS RYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDNAKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQG TQVTVS ; ;VQLVESGGGLVXXXXXXXXXXXSLRLSCAASGFTFSRYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDN AKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQGTQVTVS ; A,C ? 2 'polypeptide(L)' no yes ;(ACE)MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYI LLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM GVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN CMVTTLC ; ;XMNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNL AVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT TLC ; B,D ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name RETINAL _pdbx_entity_nonpoly.comp_id RET # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 LEU n 1 4 VAL n 1 5 GLU n 1 6 SER n 1 7 GLY n 1 8 GLY n 1 9 GLY n 1 10 LEU n 1 11 VAL n 1 12 UNK n 1 13 UNK n 1 14 UNK n 1 15 UNK n 1 16 UNK n 1 17 UNK n 1 18 UNK n 1 19 UNK n 1 20 UNK n 1 21 UNK n 1 22 UNK n 1 23 SER n 1 24 LEU n 1 25 ARG n 1 26 LEU n 1 27 SER n 1 28 CYS n 1 29 ALA n 1 30 ALA n 1 31 SER n 1 32 GLY n 1 33 PHE n 1 34 THR n 1 35 PHE n 1 36 SER n 1 37 ARG n 1 38 TYR n 1 39 VAL n 1 40 MET n 1 41 ASN n 1 42 TRP n 1 43 VAL n 1 44 ARG n 1 45 GLN n 1 46 ALA n 1 47 PRO n 1 48 GLY n 1 49 LYS n 1 50 GLY n 1 51 LEU n 1 52 GLU n 1 53 TRP n 1 54 VAL n 1 55 SER n 1 56 GLY n 1 57 ILE n 1 58 SER n 1 59 ARG n 1 60 ASP n 1 61 GLY n 1 62 SER n 1 63 TYR n 1 64 THR n 1 65 ASP n 1 66 TYR n 1 67 ALA n 1 68 ASP n 1 69 SER n 1 70 VAL n 1 71 LYS n 1 72 GLY n 1 73 ARG n 1 74 PHE n 1 75 THR n 1 76 ILE n 1 77 SER n 1 78 ARG n 1 79 ASP n 1 80 ASN n 1 81 ALA n 1 82 LYS n 1 83 ASP n 1 84 THR n 1 85 LEU n 1 86 TYR n 1 87 LEU n 1 88 GLN n 1 89 MET n 1 90 ASN n 1 91 SER n 1 92 LEU n 1 93 LYS n 1 94 PRO n 1 95 GLU n 1 96 ASP n 1 97 THR n 1 98 ALA n 1 99 VAL n 1 100 TYR n 1 101 TYR n 1 102 CYS n 1 103 SER n 1 104 LYS n 1 105 TYR n 1 106 ASN n 1 107 SER n 1 108 VAL n 1 109 VAL n 1 110 THR n 1 111 THR n 1 112 PRO n 1 113 PRO n 1 114 GLY n 1 115 GLN n 1 116 GLY n 1 117 THR n 1 118 GLN n 1 119 VAL n 1 120 THR n 1 121 VAL n 1 122 SER n 2 1 ACE n 2 2 MET n 2 3 ASN n 2 4 GLY n 2 5 THR n 2 6 GLU n 2 7 GLY n 2 8 PRO n 2 9 ASN n 2 10 PHE n 2 11 TYR n 2 12 VAL n 2 13 PRO n 2 14 PHE n 2 15 SER n 2 16 ASN n 2 17 LYS n 2 18 THR n 2 19 GLY n 2 20 VAL n 2 21 VAL n 2 22 ARG n 2 23 SER n 2 24 PRO n 2 25 PHE n 2 26 GLU n 2 27 ALA n 2 28 PRO n 2 29 GLN n 2 30 TYR n 2 31 TYR n 2 32 LEU n 2 33 ALA n 2 34 GLU n 2 35 PRO n 2 36 TRP n 2 37 GLN n 2 38 PHE n 2 39 SER n 2 40 MET n 2 41 LEU n 2 42 ALA n 2 43 ALA n 2 44 TYR n 2 45 MET n 2 46 PHE n 2 47 LEU n 2 48 LEU n 2 49 ILE n 2 50 MET n 2 51 LEU n 2 52 GLY n 2 53 PHE n 2 54 PRO n 2 55 ILE n 2 56 ASN n 2 57 PHE n 2 58 LEU n 2 59 THR n 2 60 LEU n 2 61 TYR n 2 62 VAL n 2 63 THR n 2 64 VAL n 2 65 GLN n 2 66 HIS n 2 67 LYS n 2 68 LYS n 2 69 LEU n 2 70 ARG n 2 71 THR n 2 72 PRO n 2 73 LEU n 2 74 ASN n 2 75 TYR n 2 76 ILE n 2 77 LEU n 2 78 LEU n 2 79 ASN n 2 80 LEU n 2 81 ALA n 2 82 VAL n 2 83 ALA n 2 84 ASP n 2 85 LEU n 2 86 PHE n 2 87 MET n 2 88 VAL n 2 89 PHE n 2 90 GLY n 2 91 GLY n 2 92 PHE n 2 93 THR n 2 94 THR n 2 95 THR n 2 96 LEU n 2 97 TYR n 2 98 THR n 2 99 SER n 2 100 LEU n 2 101 HIS n 2 102 GLY n 2 103 TYR n 2 104 PHE n 2 105 VAL n 2 106 PHE n 2 107 GLY n 2 108 PRO n 2 109 THR n 2 110 GLY n 2 111 CYS n 2 112 ASN n 2 113 LEU n 2 114 GLU n 2 115 GLY n 2 116 PHE n 2 117 PHE n 2 118 ALA n 2 119 THR n 2 120 LEU n 2 121 GLY n 2 122 GLY n 2 123 GLU n 2 124 ILE n 2 125 ALA n 2 126 LEU n 2 127 TRP n 2 128 SER n 2 129 LEU n 2 130 VAL n 2 131 VAL n 2 132 LEU n 2 133 ALA n 2 134 ILE n 2 135 GLU n 2 136 ARG n 2 137 TYR n 2 138 VAL n 2 139 VAL n 2 140 VAL n 2 141 CYS n 2 142 LYS n 2 143 PRO n 2 144 MET n 2 145 SER n 2 146 ASN n 2 147 PHE n 2 148 ARG n 2 149 PHE n 2 150 GLY n 2 151 GLU n 2 152 ASN n 2 153 HIS n 2 154 ALA n 2 155 ILE n 2 156 MET n 2 157 GLY n 2 158 VAL n 2 159 ALA n 2 160 PHE n 2 161 THR n 2 162 TRP n 2 163 VAL n 2 164 MET n 2 165 ALA n 2 166 LEU n 2 167 ALA n 2 168 CYS n 2 169 ALA n 2 170 ALA n 2 171 PRO n 2 172 PRO n 2 173 LEU n 2 174 VAL n 2 175 GLY n 2 176 TRP n 2 177 SER n 2 178 ARG n 2 179 TYR n 2 180 ILE n 2 181 PRO n 2 182 GLU n 2 183 GLY n 2 184 MET n 2 185 GLN n 2 186 CYS n 2 187 SER n 2 188 CYS n 2 189 GLY n 2 190 ILE n 2 191 ASP n 2 192 TYR n 2 193 TYR n 2 194 THR n 2 195 PRO n 2 196 HIS n 2 197 GLU n 2 198 GLU n 2 199 THR n 2 200 ASN n 2 201 ASN n 2 202 GLU n 2 203 SER n 2 204 PHE n 2 205 VAL n 2 206 ILE n 2 207 TYR n 2 208 MET n 2 209 PHE n 2 210 VAL n 2 211 VAL n 2 212 HIS n 2 213 PHE n 2 214 ILE n 2 215 ILE n 2 216 PRO n 2 217 LEU n 2 218 ILE n 2 219 VAL n 2 220 ILE n 2 221 PHE n 2 222 PHE n 2 223 CYS n 2 224 TYR n 2 225 GLY n 2 226 GLN n 2 227 LEU n 2 228 VAL n 2 229 PHE n 2 230 THR n 2 231 VAL n 2 232 LYS n 2 233 GLU n 2 234 ALA n 2 235 ALA n 2 236 ALA n 2 237 GLN n 2 238 GLN n 2 239 GLN n 2 240 GLU n 2 241 SER n 2 242 ALA n 2 243 THR n 2 244 THR n 2 245 GLN n 2 246 LYS n 2 247 ALA n 2 248 GLU n 2 249 LYS n 2 250 GLU n 2 251 VAL n 2 252 THR n 2 253 ARG n 2 254 MET n 2 255 VAL n 2 256 ILE n 2 257 ILE n 2 258 MET n 2 259 VAL n 2 260 ILE n 2 261 ALA n 2 262 PHE n 2 263 LEU n 2 264 ILE n 2 265 CYS n 2 266 TRP n 2 267 LEU n 2 268 PRO n 2 269 TYR n 2 270 ALA n 2 271 GLY n 2 272 VAL n 2 273 ALA n 2 274 PHE n 2 275 TYR n 2 276 ILE n 2 277 PHE n 2 278 THR n 2 279 HIS n 2 280 GLN n 2 281 GLY n 2 282 SER n 2 283 ASP n 2 284 PHE n 2 285 GLY n 2 286 PRO n 2 287 ILE n 2 288 PHE n 2 289 MET n 2 290 THR n 2 291 ILE n 2 292 PRO n 2 293 ALA n 2 294 PHE n 2 295 PHE n 2 296 ALA n 2 297 LYS n 2 298 THR n 2 299 SER n 2 300 ALA n 2 301 VAL n 2 302 TYR n 2 303 ASN n 2 304 PRO n 2 305 VAL n 2 306 ILE n 2 307 TYR n 2 308 ILE n 2 309 MET n 2 310 MET n 2 311 ASN n 2 312 LYS n 2 313 GLN n 2 314 PHE n 2 315 ARG n 2 316 ASN n 2 317 CYS n 2 318 MET n 2 319 VAL n 2 320 THR n 2 321 THR n 2 322 LEU n 2 323 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 122 _entity_src_gen.gene_src_common_name llama _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lama glama' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9844 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 323 _entity_src_nat.common_name 'domestic cattle' _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 3 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}' LINUCS PDB-CARE ? 4 4 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 5 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNK 'L-peptide linking' . UNKNOWN ? 'C4 H9 N O2' 103.120 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 2 ? ? ? A . n A 1 2 GLN 2 3 3 GLN GLN A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 VAL 4 5 5 VAL VAL A . n A 1 5 GLU 5 6 6 GLU GLU A . n A 1 6 SER 6 7 7 SER SER A . n A 1 7 GLY 7 8 8 GLY GLY A . n A 1 8 GLY 8 9 9 GLY GLY A . n A 1 9 GLY 9 10 10 GLY GLY A . n A 1 10 LEU 10 11 11 LEU LEU A . n A 1 11 VAL 11 392 ? ? ? A . n A 1 12 UNK 12 393 ? ? ? A . n A 1 13 UNK 13 394 ? ? ? A . n A 1 14 UNK 14 395 ? ? ? A . n A 1 15 UNK 15 396 ? ? ? A . n A 1 16 UNK 16 397 ? ? ? A . n A 1 17 UNK 17 398 ? ? ? A . n A 1 18 UNK 18 399 ? ? ? A . n A 1 19 UNK 19 400 ? ? ? A . n A 1 20 UNK 20 401 ? ? ? A . n A 1 21 UNK 21 402 ? ? ? A . n A 1 22 UNK 22 403 ? ? ? A . n A 1 23 SER 23 404 404 SER SER A . n A 1 24 LEU 24 405 405 LEU LEU A . n A 1 25 ARG 25 406 406 ARG ARG A . n A 1 26 LEU 26 407 407 LEU LEU A . n A 1 27 SER 27 408 408 SER SER A . n A 1 28 CYS 28 409 409 CYS CYS A . n A 1 29 ALA 29 410 410 ALA ALA A . n A 1 30 ALA 30 411 411 ALA ALA A . n A 1 31 SER 31 412 412 SER SER A . n A 1 32 GLY 32 413 413 GLY GLY A . n A 1 33 PHE 33 414 414 PHE PHE A . n A 1 34 THR 34 415 415 THR THR A . n A 1 35 PHE 35 416 416 PHE PHE A . n A 1 36 SER 36 417 417 SER SER A . n A 1 37 ARG 37 418 418 ARG ARG A . n A 1 38 TYR 38 419 419 TYR TYR A . n A 1 39 VAL 39 420 420 VAL VAL A . n A 1 40 MET 40 421 421 MET MET A . n A 1 41 ASN 41 422 422 ASN ASN A . n A 1 42 TRP 42 423 423 TRP TRP A . n A 1 43 VAL 43 424 424 VAL VAL A . n A 1 44 ARG 44 425 425 ARG ARG A . n A 1 45 GLN 45 426 426 GLN GLN A . n A 1 46 ALA 46 427 427 ALA ALA A . n A 1 47 PRO 47 428 428 PRO PRO A . n A 1 48 GLY 48 429 429 GLY GLY A . n A 1 49 LYS 49 430 430 LYS LYS A . n A 1 50 GLY 50 431 431 GLY GLY A . n A 1 51 LEU 51 432 432 LEU LEU A . n A 1 52 GLU 52 433 433 GLU GLU A . n A 1 53 TRP 53 434 434 TRP TRP A . n A 1 54 VAL 54 435 435 VAL VAL A . n A 1 55 SER 55 436 436 SER SER A . n A 1 56 GLY 56 437 437 GLY GLY A . n A 1 57 ILE 57 438 438 ILE ILE A . n A 1 58 SER 58 439 439 SER SER A . n A 1 59 ARG 59 440 440 ARG ARG A . n A 1 60 ASP 60 441 441 ASP ASP A . n A 1 61 GLY 61 442 442 GLY GLY A . n A 1 62 SER 62 443 443 SER SER A . n A 1 63 TYR 63 444 444 TYR TYR A . n A 1 64 THR 64 445 445 THR THR A . n A 1 65 ASP 65 446 446 ASP ASP A . n A 1 66 TYR 66 447 447 TYR TYR A . n A 1 67 ALA 67 448 448 ALA ALA A . n A 1 68 ASP 68 449 449 ASP ASP A . n A 1 69 SER 69 450 450 SER SER A . n A 1 70 VAL 70 451 451 VAL VAL A . n A 1 71 LYS 71 452 452 LYS LYS A . n A 1 72 GLY 72 453 453 GLY GLY A . n A 1 73 ARG 73 454 454 ARG ARG A . n A 1 74 PHE 74 455 455 PHE PHE A . n A 1 75 THR 75 456 456 THR THR A . n A 1 76 ILE 76 457 457 ILE ILE A . n A 1 77 SER 77 458 458 SER SER A . n A 1 78 ARG 78 459 459 ARG ARG A . n A 1 79 ASP 79 460 460 ASP ASP A . n A 1 80 ASN 80 461 461 ASN ASN A . n A 1 81 ALA 81 462 462 ALA ALA A . n A 1 82 LYS 82 463 463 LYS LYS A . n A 1 83 ASP 83 464 464 ASP ASP A . n A 1 84 THR 84 465 465 THR THR A . n A 1 85 LEU 85 466 466 LEU LEU A . n A 1 86 TYR 86 467 467 TYR TYR A . n A 1 87 LEU 87 468 468 LEU LEU A . n A 1 88 GLN 88 469 469 GLN GLN A . n A 1 89 MET 89 470 470 MET MET A . n A 1 90 ASN 90 471 471 ASN ASN A . n A 1 91 SER 91 472 472 SER SER A . n A 1 92 LEU 92 473 473 LEU LEU A . n A 1 93 LYS 93 474 474 LYS LYS A . n A 1 94 PRO 94 475 475 PRO PRO A . n A 1 95 GLU 95 476 476 GLU GLU A . n A 1 96 ASP 96 477 477 ASP ASP A . n A 1 97 THR 97 478 478 THR THR A . n A 1 98 ALA 98 479 479 ALA ALA A . n A 1 99 VAL 99 480 480 VAL VAL A . n A 1 100 TYR 100 481 481 TYR TYR A . n A 1 101 TYR 101 482 482 TYR TYR A . n A 1 102 CYS 102 483 483 CYS CYS A . n A 1 103 SER 103 484 484 SER SER A . n A 1 104 LYS 104 485 485 LYS LYS A . n A 1 105 TYR 105 486 486 TYR TYR A . n A 1 106 ASN 106 487 487 ASN ASN A . n A 1 107 SER 107 488 488 SER SER A . n A 1 108 VAL 108 489 489 VAL VAL A . n A 1 109 VAL 109 490 490 VAL VAL A . n A 1 110 THR 110 491 491 THR THR A . n A 1 111 THR 111 492 492 THR THR A . n A 1 112 PRO 112 493 493 PRO PRO A . n A 1 113 PRO 113 494 494 PRO PRO A . n A 1 114 GLY 114 495 495 GLY GLY A . n A 1 115 GLN 115 496 496 GLN GLN A . n A 1 116 GLY 116 497 497 GLY GLY A . n A 1 117 THR 117 498 498 THR THR A . n A 1 118 GLN 118 499 499 GLN GLN A . n A 1 119 VAL 119 500 500 VAL VAL A . n A 1 120 THR 120 501 501 THR THR A . n A 1 121 VAL 121 502 502 VAL VAL A . n A 1 122 SER 122 503 503 SER SER A . n B 1 1 VAL 1 2 2 VAL VAL C . n B 1 2 GLN 2 3 3 GLN GLN C . n B 1 3 LEU 3 4 4 LEU LEU C . n B 1 4 VAL 4 5 5 VAL VAL C . n B 1 5 GLU 5 6 6 GLU GLU C . n B 1 6 SER 6 7 7 SER SER C . n B 1 7 GLY 7 8 8 GLY GLY C . n B 1 8 GLY 8 9 9 GLY GLY C . n B 1 9 GLY 9 10 10 GLY GLY C . n B 1 10 LEU 10 11 11 LEU LEU C . n B 1 11 VAL 11 12 12 VAL VAL C . n B 1 12 UNK 12 393 ? ? ? C . n B 1 13 UNK 13 394 ? ? ? C . n B 1 14 UNK 14 395 ? ? ? C . n B 1 15 UNK 15 396 ? ? ? C . n B 1 16 UNK 16 397 ? ? ? C . n B 1 17 UNK 17 398 ? ? ? C . n B 1 18 UNK 18 399 ? ? ? C . n B 1 19 UNK 19 400 ? ? ? C . n B 1 20 UNK 20 401 ? ? ? C . n B 1 21 UNK 21 402 ? ? ? C . n B 1 22 UNK 22 403 ? ? ? C . n B 1 23 SER 23 404 404 SER SER C . n B 1 24 LEU 24 405 405 LEU LEU C . n B 1 25 ARG 25 406 406 ARG ARG C . n B 1 26 LEU 26 407 407 LEU LEU C . n B 1 27 SER 27 408 408 SER SER C . n B 1 28 CYS 28 409 409 CYS CYS C . n B 1 29 ALA 29 410 410 ALA ALA C . n B 1 30 ALA 30 411 411 ALA ALA C . n B 1 31 SER 31 412 412 SER SER C . n B 1 32 GLY 32 413 413 GLY GLY C . n B 1 33 PHE 33 414 414 PHE PHE C . n B 1 34 THR 34 415 415 THR THR C . n B 1 35 PHE 35 416 416 PHE PHE C . n B 1 36 SER 36 417 417 SER SER C . n B 1 37 ARG 37 418 418 ARG ARG C . n B 1 38 TYR 38 419 419 TYR TYR C . n B 1 39 VAL 39 420 420 VAL VAL C . n B 1 40 MET 40 421 421 MET MET C . n B 1 41 ASN 41 422 422 ASN ASN C . n B 1 42 TRP 42 423 423 TRP TRP C . n B 1 43 VAL 43 424 424 VAL VAL C . n B 1 44 ARG 44 425 425 ARG ARG C . n B 1 45 GLN 45 426 426 GLN GLN C . n B 1 46 ALA 46 427 427 ALA ALA C . n B 1 47 PRO 47 428 428 PRO PRO C . n B 1 48 GLY 48 429 429 GLY GLY C . n B 1 49 LYS 49 430 430 LYS LYS C . n B 1 50 GLY 50 431 431 GLY GLY C . n B 1 51 LEU 51 432 432 LEU LEU C . n B 1 52 GLU 52 433 433 GLU GLU C . n B 1 53 TRP 53 434 434 TRP TRP C . n B 1 54 VAL 54 435 435 VAL VAL C . n B 1 55 SER 55 436 436 SER SER C . n B 1 56 GLY 56 437 437 GLY GLY C . n B 1 57 ILE 57 438 438 ILE ILE C . n B 1 58 SER 58 439 439 SER SER C . n B 1 59 ARG 59 440 440 ARG ARG C . n B 1 60 ASP 60 441 441 ASP ASP C . n B 1 61 GLY 61 442 442 GLY GLY C . n B 1 62 SER 62 443 443 SER SER C . n B 1 63 TYR 63 444 444 TYR TYR C . n B 1 64 THR 64 445 445 THR THR C . n B 1 65 ASP 65 446 446 ASP ASP C . n B 1 66 TYR 66 447 447 TYR TYR C . n B 1 67 ALA 67 448 448 ALA ALA C . n B 1 68 ASP 68 449 449 ASP ASP C . n B 1 69 SER 69 450 450 SER SER C . n B 1 70 VAL 70 451 451 VAL VAL C . n B 1 71 LYS 71 452 452 LYS LYS C . n B 1 72 GLY 72 453 453 GLY GLY C . n B 1 73 ARG 73 454 454 ARG ARG C . n B 1 74 PHE 74 455 455 PHE PHE C . n B 1 75 THR 75 456 456 THR THR C . n B 1 76 ILE 76 457 457 ILE ILE C . n B 1 77 SER 77 458 458 SER SER C . n B 1 78 ARG 78 459 459 ARG ARG C . n B 1 79 ASP 79 460 460 ASP ASP C . n B 1 80 ASN 80 461 461 ASN ASN C . n B 1 81 ALA 81 462 462 ALA ALA C . n B 1 82 LYS 82 463 463 LYS LYS C . n B 1 83 ASP 83 464 464 ASP ASP C . n B 1 84 THR 84 465 465 THR THR C . n B 1 85 LEU 85 466 466 LEU LEU C . n B 1 86 TYR 86 467 467 TYR TYR C . n B 1 87 LEU 87 468 468 LEU LEU C . n B 1 88 GLN 88 469 469 GLN GLN C . n B 1 89 MET 89 470 470 MET MET C . n B 1 90 ASN 90 471 471 ASN ASN C . n B 1 91 SER 91 472 472 SER SER C . n B 1 92 LEU 92 473 473 LEU LEU C . n B 1 93 LYS 93 474 474 LYS LYS C . n B 1 94 PRO 94 475 475 PRO PRO C . n B 1 95 GLU 95 476 476 GLU GLU C . n B 1 96 ASP 96 477 477 ASP ASP C . n B 1 97 THR 97 478 478 THR THR C . n B 1 98 ALA 98 479 479 ALA ALA C . n B 1 99 VAL 99 480 480 VAL VAL C . n B 1 100 TYR 100 481 481 TYR TYR C . n B 1 101 TYR 101 482 482 TYR TYR C . n B 1 102 CYS 102 483 483 CYS CYS C . n B 1 103 SER 103 484 484 SER SER C . n B 1 104 LYS 104 485 485 LYS LYS C . n B 1 105 TYR 105 486 486 TYR TYR C . n B 1 106 ASN 106 487 487 ASN ASN C . n B 1 107 SER 107 488 488 SER SER C . n B 1 108 VAL 108 489 489 VAL VAL C . n B 1 109 VAL 109 490 490 VAL VAL C . n B 1 110 THR 110 491 491 THR THR C . n B 1 111 THR 111 492 492 THR THR C . n B 1 112 PRO 112 493 493 PRO PRO C . n B 1 113 PRO 113 494 494 PRO PRO C . n B 1 114 GLY 114 495 495 GLY GLY C . n B 1 115 GLN 115 496 496 GLN GLN C . n B 1 116 GLY 116 497 497 GLY GLY C . n B 1 117 THR 117 498 498 THR THR C . n B 1 118 GLN 118 499 499 GLN GLN C . n B 1 119 VAL 119 500 500 VAL VAL C . n B 1 120 THR 120 501 501 THR THR C . n B 1 121 VAL 121 502 502 VAL VAL C . n B 1 122 SER 122 503 503 SER SER C . n C 2 1 ACE 1 401 401 ACE ACE B . n C 2 2 MET 2 402 1 MET MET B . n C 2 3 ASN 3 403 2 ASN ASN B . n C 2 4 GLY 4 404 3 GLY GLY B . n C 2 5 THR 5 405 4 THR THR B . n C 2 6 GLU 6 406 5 GLU GLU B . n C 2 7 GLY 7 407 6 GLY GLY B . n C 2 8 PRO 8 408 7 PRO PRO B . n C 2 9 ASN 9 409 8 ASN ASN B . n C 2 10 PHE 10 410 9 PHE PHE B . n C 2 11 TYR 11 411 10 TYR TYR B . n C 2 12 VAL 12 412 11 VAL VAL B . n C 2 13 PRO 13 413 12 PRO PRO B . n C 2 14 PHE 14 414 13 PHE PHE B . n C 2 15 SER 15 415 14 SER SER B . n C 2 16 ASN 16 416 15 ASN ASN B . n C 2 17 LYS 17 417 16 LYS LYS B . n C 2 18 THR 18 418 17 THR THR B . n C 2 19 GLY 19 419 18 GLY GLY B . n C 2 20 VAL 20 420 19 VAL VAL B . n C 2 21 VAL 21 421 20 VAL VAL B . n C 2 22 ARG 22 422 21 ARG ARG B . n C 2 23 SER 23 423 22 SER SER B . n C 2 24 PRO 24 424 23 PRO PRO B . n C 2 25 PHE 25 425 24 PHE PHE B . n C 2 26 GLU 26 426 25 GLU GLU B . n C 2 27 ALA 27 427 26 ALA ALA B . n C 2 28 PRO 28 428 27 PRO PRO B . n C 2 29 GLN 29 429 28 GLN GLN B . n C 2 30 TYR 30 430 29 TYR TYR B . n C 2 31 TYR 31 431 30 TYR TYR B . n C 2 32 LEU 32 432 31 LEU LEU B . n C 2 33 ALA 33 433 32 ALA ALA B . n C 2 34 GLU 34 434 33 GLU GLU B . n C 2 35 PRO 35 435 34 PRO PRO B . n C 2 36 TRP 36 436 35 TRP TRP B . n C 2 37 GLN 37 437 36 GLN GLN B . n C 2 38 PHE 38 438 37 PHE PHE B . n C 2 39 SER 39 439 38 SER SER B . n C 2 40 MET 40 440 39 MET MET B . n C 2 41 LEU 41 441 40 LEU LEU B . n C 2 42 ALA 42 442 41 ALA ALA B . n C 2 43 ALA 43 443 42 ALA ALA B . n C 2 44 TYR 44 444 43 TYR TYR B . n C 2 45 MET 45 445 44 MET MET B . n C 2 46 PHE 46 446 45 PHE PHE B . n C 2 47 LEU 47 447 46 LEU LEU B . n C 2 48 LEU 48 448 47 LEU LEU B . n C 2 49 ILE 49 449 48 ILE ILE B . n C 2 50 MET 50 450 49 MET MET B . n C 2 51 LEU 51 451 50 LEU LEU B . n C 2 52 GLY 52 452 51 GLY GLY B . n C 2 53 PHE 53 453 52 PHE PHE B . n C 2 54 PRO 54 454 53 PRO PRO B . n C 2 55 ILE 55 455 54 ILE ILE B . n C 2 56 ASN 56 456 55 ASN ASN B . n C 2 57 PHE 57 457 56 PHE PHE B . n C 2 58 LEU 58 458 57 LEU LEU B . n C 2 59 THR 59 459 58 THR THR B . n C 2 60 LEU 60 460 59 LEU LEU B . n C 2 61 TYR 61 461 60 TYR TYR B . n C 2 62 VAL 62 462 61 VAL VAL B . n C 2 63 THR 63 463 62 THR THR B . n C 2 64 VAL 64 464 63 VAL VAL B . n C 2 65 GLN 65 465 64 GLN GLN B . n C 2 66 HIS 66 466 65 HIS HIS B . n C 2 67 LYS 67 467 66 LYS LYS B . n C 2 68 LYS 68 468 67 LYS LYS B . n C 2 69 LEU 69 469 68 LEU LEU B . n C 2 70 ARG 70 470 69 ARG ARG B . n C 2 71 THR 71 471 70 THR THR B . n C 2 72 PRO 72 472 71 PRO PRO B . n C 2 73 LEU 73 473 72 LEU LEU B . n C 2 74 ASN 74 474 73 ASN ASN B . n C 2 75 TYR 75 475 74 TYR TYR B . n C 2 76 ILE 76 476 75 ILE ILE B . n C 2 77 LEU 77 477 76 LEU LEU B . n C 2 78 LEU 78 478 77 LEU LEU B . n C 2 79 ASN 79 479 78 ASN ASN B . n C 2 80 LEU 80 480 79 LEU LEU B . n C 2 81 ALA 81 481 80 ALA ALA B . n C 2 82 VAL 82 482 81 VAL VAL B . n C 2 83 ALA 83 483 82 ALA ALA B . n C 2 84 ASP 84 484 83 ASP ASP B . n C 2 85 LEU 85 485 84 LEU LEU B . n C 2 86 PHE 86 486 85 PHE PHE B . n C 2 87 MET 87 487 86 MET MET B . n C 2 88 VAL 88 488 87 VAL VAL B . n C 2 89 PHE 89 489 88 PHE PHE B . n C 2 90 GLY 90 490 89 GLY GLY B . n C 2 91 GLY 91 491 90 GLY GLY B . n C 2 92 PHE 92 492 91 PHE PHE B . n C 2 93 THR 93 493 92 THR THR B . n C 2 94 THR 94 494 93 THR THR B . n C 2 95 THR 95 495 94 THR THR B . n C 2 96 LEU 96 496 95 LEU LEU B . n C 2 97 TYR 97 497 96 TYR TYR B . n C 2 98 THR 98 498 97 THR THR B . n C 2 99 SER 99 499 98 SER SER B . n C 2 100 LEU 100 500 99 LEU LEU B . n C 2 101 HIS 101 501 100 HIS HIS B . n C 2 102 GLY 102 502 101 GLY GLY B . n C 2 103 TYR 103 503 102 TYR TYR B . n C 2 104 PHE 104 504 103 PHE PHE B . n C 2 105 VAL 105 505 104 VAL VAL B . n C 2 106 PHE 106 506 105 PHE PHE B . n C 2 107 GLY 107 507 106 GLY GLY B . n C 2 108 PRO 108 508 107 PRO PRO B . n C 2 109 THR 109 509 108 THR THR B . n C 2 110 GLY 110 510 109 GLY GLY B . n C 2 111 CYS 111 511 110 CYS CYS B . n C 2 112 ASN 112 512 111 ASN ASN B . n C 2 113 LEU 113 513 112 LEU LEU B . n C 2 114 GLU 114 514 113 GLU GLU B . n C 2 115 GLY 115 515 114 GLY GLY B . n C 2 116 PHE 116 516 115 PHE PHE B . n C 2 117 PHE 117 517 116 PHE PHE B . n C 2 118 ALA 118 518 117 ALA ALA B . n C 2 119 THR 119 519 118 THR THR B . n C 2 120 LEU 120 520 119 LEU LEU B . n C 2 121 GLY 121 521 120 GLY GLY B . n C 2 122 GLY 122 522 121 GLY GLY B . n C 2 123 GLU 123 523 122 GLU GLU B . n C 2 124 ILE 124 524 123 ILE ILE B . n C 2 125 ALA 125 525 124 ALA ALA B . n C 2 126 LEU 126 526 125 LEU LEU B . n C 2 127 TRP 127 527 126 TRP TRP B . n C 2 128 SER 128 528 127 SER SER B . n C 2 129 LEU 129 529 128 LEU LEU B . n C 2 130 VAL 130 530 129 VAL VAL B . n C 2 131 VAL 131 531 130 VAL VAL B . n C 2 132 LEU 132 532 131 LEU LEU B . n C 2 133 ALA 133 533 132 ALA ALA B . n C 2 134 ILE 134 534 133 ILE ILE B . n C 2 135 GLU 135 535 134 GLU GLU B . n C 2 136 ARG 136 536 135 ARG ARG B . n C 2 137 TYR 137 537 136 TYR TYR B . n C 2 138 VAL 138 538 137 VAL VAL B . n C 2 139 VAL 139 539 138 VAL VAL B . n C 2 140 VAL 140 540 139 VAL VAL B . n C 2 141 CYS 141 541 140 CYS CYS B . n C 2 142 LYS 142 542 141 LYS LYS B . n C 2 143 PRO 143 543 142 PRO PRO B . n C 2 144 MET 144 544 143 MET MET B . n C 2 145 SER 145 545 144 SER SER B . n C 2 146 ASN 146 546 145 ASN ASN B . n C 2 147 PHE 147 547 146 PHE PHE B . n C 2 148 ARG 148 548 147 ARG ARG B . n C 2 149 PHE 149 549 148 PHE PHE B . n C 2 150 GLY 150 550 149 GLY GLY B . n C 2 151 GLU 151 551 150 GLU GLU B . n C 2 152 ASN 152 552 151 ASN ASN B . n C 2 153 HIS 153 553 152 HIS HIS B . n C 2 154 ALA 154 554 153 ALA ALA B . n C 2 155 ILE 155 555 154 ILE ILE B . n C 2 156 MET 156 556 155 MET MET B . n C 2 157 GLY 157 557 156 GLY GLY B . n C 2 158 VAL 158 558 157 VAL VAL B . n C 2 159 ALA 159 559 158 ALA ALA B . n C 2 160 PHE 160 560 159 PHE PHE B . n C 2 161 THR 161 561 160 THR THR B . n C 2 162 TRP 162 562 161 TRP TRP B . n C 2 163 VAL 163 563 162 VAL VAL B . n C 2 164 MET 164 564 163 MET MET B . n C 2 165 ALA 165 565 164 ALA ALA B . n C 2 166 LEU 166 566 165 LEU LEU B . n C 2 167 ALA 167 567 166 ALA ALA B . n C 2 168 CYS 168 568 167 CYS CYS B . n C 2 169 ALA 169 569 168 ALA ALA B . n C 2 170 ALA 170 570 169 ALA ALA B . n C 2 171 PRO 171 571 170 PRO PRO B . n C 2 172 PRO 172 572 171 PRO PRO B . n C 2 173 LEU 173 573 172 LEU LEU B . n C 2 174 VAL 174 574 173 VAL VAL B . n C 2 175 GLY 175 575 174 GLY GLY B . n C 2 176 TRP 176 576 175 TRP TRP B . n C 2 177 SER 177 577 176 SER SER B . n C 2 178 ARG 178 578 177 ARG ARG B . n C 2 179 TYR 179 579 178 TYR TYR B . n C 2 180 ILE 180 580 179 ILE ILE B . n C 2 181 PRO 181 581 180 PRO PRO B . n C 2 182 GLU 182 582 181 GLU GLU B . n C 2 183 GLY 183 583 182 GLY GLY B . n C 2 184 MET 184 584 183 MET MET B . n C 2 185 GLN 185 585 184 GLN GLN B . n C 2 186 CYS 186 586 185 CYS CYS B . n C 2 187 SER 187 587 186 SER SER B . n C 2 188 CYS 188 588 187 CYS CYS B . n C 2 189 GLY 189 589 188 GLY GLY B . n C 2 190 ILE 190 590 189 ILE ILE B . n C 2 191 ASP 191 591 190 ASP ASP B . n C 2 192 TYR 192 592 191 TYR TYR B . n C 2 193 TYR 193 593 192 TYR TYR B . n C 2 194 THR 194 594 193 THR THR B . n C 2 195 PRO 195 595 194 PRO PRO B . n C 2 196 HIS 196 596 195 HIS HIS B . n C 2 197 GLU 197 597 196 GLU GLU B . n C 2 198 GLU 198 598 197 GLU GLU B . n C 2 199 THR 199 599 198 THR THR B . n C 2 200 ASN 200 600 199 ASN ASN B . n C 2 201 ASN 201 601 200 ASN ASN B . n C 2 202 GLU 202 602 201 GLU GLU B . n C 2 203 SER 203 603 202 SER SER B . n C 2 204 PHE 204 604 203 PHE PHE B . n C 2 205 VAL 205 605 204 VAL VAL B . n C 2 206 ILE 206 606 205 ILE ILE B . n C 2 207 TYR 207 607 206 TYR TYR B . n C 2 208 MET 208 608 207 MET MET B . n C 2 209 PHE 209 609 208 PHE PHE B . n C 2 210 VAL 210 610 209 VAL VAL B . n C 2 211 VAL 211 611 210 VAL VAL B . n C 2 212 HIS 212 612 211 HIS HIS B . n C 2 213 PHE 213 613 212 PHE PHE B . n C 2 214 ILE 214 614 213 ILE ILE B . n C 2 215 ILE 215 615 214 ILE ILE B . n C 2 216 PRO 216 616 215 PRO PRO B . n C 2 217 LEU 217 617 216 LEU LEU B . n C 2 218 ILE 218 618 217 ILE ILE B . n C 2 219 VAL 219 619 218 VAL VAL B . n C 2 220 ILE 220 620 219 ILE ILE B . n C 2 221 PHE 221 621 220 PHE PHE B . n C 2 222 PHE 222 622 221 PHE PHE B . n C 2 223 CYS 223 623 222 CYS CYS B . n C 2 224 TYR 224 624 223 TYR TYR B . n C 2 225 GLY 225 625 224 GLY GLY B . n C 2 226 GLN 226 626 225 GLN GLN B . n C 2 227 LEU 227 627 226 LEU LEU B . n C 2 228 VAL 228 628 227 VAL VAL B . n C 2 229 PHE 229 629 228 PHE PHE B . n C 2 230 THR 230 630 229 THR THR B . n C 2 231 VAL 231 631 ? ? ? B . n C 2 232 LYS 232 632 ? ? ? B . n C 2 233 GLU 233 633 ? ? ? B . n C 2 234 ALA 234 634 ? ? ? B . n C 2 235 ALA 235 635 ? ? ? B . n C 2 236 ALA 236 636 ? ? ? B . n C 2 237 GLN 237 637 ? ? ? B . n C 2 238 GLN 238 638 ? ? ? B . n C 2 239 GLN 239 639 ? ? ? B . n C 2 240 GLU 240 640 ? ? ? B . n C 2 241 SER 241 641 ? ? ? B . n C 2 242 ALA 242 642 ? ? ? B . n C 2 243 THR 243 643 ? ? ? B . n C 2 244 THR 244 644 ? ? ? B . n C 2 245 GLN 245 645 244 GLN GLN B . n C 2 246 LYS 246 646 245 LYS LYS B . n C 2 247 ALA 247 647 246 ALA ALA B . n C 2 248 GLU 248 648 247 GLU GLU B . n C 2 249 LYS 249 649 248 LYS LYS B . n C 2 250 GLU 250 650 249 GLU GLU B . n C 2 251 VAL 251 651 250 VAL VAL B . n C 2 252 THR 252 652 251 THR THR B . n C 2 253 ARG 253 653 252 ARG ARG B . n C 2 254 MET 254 654 253 MET MET B . n C 2 255 VAL 255 655 254 VAL VAL B . n C 2 256 ILE 256 656 255 ILE ILE B . n C 2 257 ILE 257 657 256 ILE ILE B . n C 2 258 MET 258 658 257 MET MET B . n C 2 259 VAL 259 659 258 VAL VAL B . n C 2 260 ILE 260 660 259 ILE ILE B . n C 2 261 ALA 261 661 260 ALA ALA B . n C 2 262 PHE 262 662 261 PHE PHE B . n C 2 263 LEU 263 663 262 LEU LEU B . n C 2 264 ILE 264 664 263 ILE ILE B . n C 2 265 CYS 265 665 264 CYS CYS B . n C 2 266 TRP 266 666 265 TRP TRP B . n C 2 267 LEU 267 667 266 LEU LEU B . n C 2 268 PRO 268 668 267 PRO PRO B . n C 2 269 TYR 269 669 268 TYR TYR B . n C 2 270 ALA 270 670 269 ALA ALA B . n C 2 271 GLY 271 671 270 GLY GLY B . n C 2 272 VAL 272 672 271 VAL VAL B . n C 2 273 ALA 273 673 272 ALA ALA B . n C 2 274 PHE 274 674 273 PHE PHE B . n C 2 275 TYR 275 675 274 TYR TYR B . n C 2 276 ILE 276 676 275 ILE ILE B . n C 2 277 PHE 277 677 276 PHE PHE B . n C 2 278 THR 278 678 277 THR THR B . n C 2 279 HIS 279 679 278 HIS HIS B . n C 2 280 GLN 280 680 279 GLN GLN B . n C 2 281 GLY 281 681 280 GLY GLY B . n C 2 282 SER 282 682 281 SER SER B . n C 2 283 ASP 283 683 282 ASP ASP B . n C 2 284 PHE 284 684 283 PHE PHE B . n C 2 285 GLY 285 685 284 GLY GLY B . n C 2 286 PRO 286 686 285 PRO PRO B . n C 2 287 ILE 287 687 286 ILE ILE B . n C 2 288 PHE 288 688 287 PHE PHE B . n C 2 289 MET 289 689 288 MET MET B . n C 2 290 THR 290 690 289 THR THR B . n C 2 291 ILE 291 691 290 ILE ILE B . n C 2 292 PRO 292 692 291 PRO PRO B . n C 2 293 ALA 293 693 292 ALA ALA B . n C 2 294 PHE 294 694 293 PHE PHE B . n C 2 295 PHE 295 695 294 PHE PHE B . n C 2 296 ALA 296 696 295 ALA ALA B . n C 2 297 LYS 297 697 296 LYS LYS B . n C 2 298 THR 298 698 297 THR THR B . n C 2 299 SER 299 699 298 SER SER B . n C 2 300 ALA 300 700 299 ALA ALA B . n C 2 301 VAL 301 701 300 VAL VAL B . n C 2 302 TYR 302 702 301 TYR TYR B . n C 2 303 ASN 303 703 302 ASN ASN B . n C 2 304 PRO 304 704 303 PRO PRO B . n C 2 305 VAL 305 705 304 VAL VAL B . n C 2 306 ILE 306 706 305 ILE ILE B . n C 2 307 TYR 307 707 306 TYR TYR B . n C 2 308 ILE 308 708 307 ILE ILE B . n C 2 309 MET 309 709 308 MET MET B . n C 2 310 MET 310 710 309 MET MET B . n C 2 311 ASN 311 711 310 ASN ASN B . n C 2 312 LYS 312 712 311 LYS LYS B . n C 2 313 GLN 313 713 312 GLN GLN B . n C 2 314 PHE 314 714 313 PHE PHE B . n C 2 315 ARG 315 715 314 ARG ARG B . n C 2 316 ASN 316 716 315 ASN ASN B . n C 2 317 CYS 317 717 316 CYS CYS B . n C 2 318 MET 318 718 317 MET MET B . n C 2 319 VAL 319 719 318 VAL VAL B . n C 2 320 THR 320 720 319 THR THR B . n C 2 321 THR 321 721 320 THR THR B . n C 2 322 LEU 322 722 321 LEU LEU B . n C 2 323 CYS 323 723 322 CYS CYS B . n D 2 1 ACE 1 401 401 ACE ACE D . n D 2 2 MET 2 402 1 MET MET D . n D 2 3 ASN 3 403 2 ASN ASN D . n D 2 4 GLY 4 404 3 GLY GLY D . n D 2 5 THR 5 405 4 THR THR D . n D 2 6 GLU 6 406 5 GLU GLU D . n D 2 7 GLY 7 407 6 GLY GLY D . n D 2 8 PRO 8 408 7 PRO PRO D . n D 2 9 ASN 9 409 8 ASN ASN D . n D 2 10 PHE 10 410 9 PHE PHE D . n D 2 11 TYR 11 411 10 TYR TYR D . n D 2 12 VAL 12 412 11 VAL VAL D . n D 2 13 PRO 13 413 12 PRO PRO D . n D 2 14 PHE 14 414 13 PHE PHE D . n D 2 15 SER 15 415 14 SER SER D . n D 2 16 ASN 16 416 15 ASN ASN D . n D 2 17 LYS 17 417 16 LYS LYS D . n D 2 18 THR 18 418 17 THR THR D . n D 2 19 GLY 19 419 18 GLY GLY D . n D 2 20 VAL 20 420 19 VAL VAL D . n D 2 21 VAL 21 421 20 VAL VAL D . n D 2 22 ARG 22 422 21 ARG ARG D . n D 2 23 SER 23 423 22 SER SER D . n D 2 24 PRO 24 424 23 PRO PRO D . n D 2 25 PHE 25 425 24 PHE PHE D . n D 2 26 GLU 26 426 25 GLU GLU D . n D 2 27 ALA 27 427 26 ALA ALA D . n D 2 28 PRO 28 428 27 PRO PRO D . n D 2 29 GLN 29 429 28 GLN GLN D . n D 2 30 TYR 30 430 29 TYR TYR D . n D 2 31 TYR 31 431 30 TYR TYR D . n D 2 32 LEU 32 432 31 LEU LEU D . n D 2 33 ALA 33 433 32 ALA ALA D . n D 2 34 GLU 34 434 33 GLU GLU D . n D 2 35 PRO 35 435 34 PRO PRO D . n D 2 36 TRP 36 436 35 TRP TRP D . n D 2 37 GLN 37 437 36 GLN GLN D . n D 2 38 PHE 38 438 37 PHE PHE D . n D 2 39 SER 39 439 38 SER SER D . n D 2 40 MET 40 440 39 MET MET D . n D 2 41 LEU 41 441 40 LEU LEU D . n D 2 42 ALA 42 442 41 ALA ALA D . n D 2 43 ALA 43 443 42 ALA ALA D . n D 2 44 TYR 44 444 43 TYR TYR D . n D 2 45 MET 45 445 44 MET MET D . n D 2 46 PHE 46 446 45 PHE PHE D . n D 2 47 LEU 47 447 46 LEU LEU D . n D 2 48 LEU 48 448 47 LEU LEU D . n D 2 49 ILE 49 449 48 ILE ILE D . n D 2 50 MET 50 450 49 MET MET D . n D 2 51 LEU 51 451 50 LEU LEU D . n D 2 52 GLY 52 452 51 GLY GLY D . n D 2 53 PHE 53 453 52 PHE PHE D . n D 2 54 PRO 54 454 53 PRO PRO D . n D 2 55 ILE 55 455 54 ILE ILE D . n D 2 56 ASN 56 456 55 ASN ASN D . n D 2 57 PHE 57 457 56 PHE PHE D . n D 2 58 LEU 58 458 57 LEU LEU D . n D 2 59 THR 59 459 58 THR THR D . n D 2 60 LEU 60 460 59 LEU LEU D . n D 2 61 TYR 61 461 60 TYR TYR D . n D 2 62 VAL 62 462 61 VAL VAL D . n D 2 63 THR 63 463 62 THR THR D . n D 2 64 VAL 64 464 63 VAL VAL D . n D 2 65 GLN 65 465 64 GLN GLN D . n D 2 66 HIS 66 466 65 HIS HIS D . n D 2 67 LYS 67 467 66 LYS LYS D . n D 2 68 LYS 68 468 67 LYS LYS D . n D 2 69 LEU 69 469 68 LEU LEU D . n D 2 70 ARG 70 470 69 ARG ARG D . n D 2 71 THR 71 471 70 THR THR D . n D 2 72 PRO 72 472 71 PRO PRO D . n D 2 73 LEU 73 473 72 LEU LEU D . n D 2 74 ASN 74 474 73 ASN ASN D . n D 2 75 TYR 75 475 74 TYR TYR D . n D 2 76 ILE 76 476 75 ILE ILE D . n D 2 77 LEU 77 477 76 LEU LEU D . n D 2 78 LEU 78 478 77 LEU LEU D . n D 2 79 ASN 79 479 78 ASN ASN D . n D 2 80 LEU 80 480 79 LEU LEU D . n D 2 81 ALA 81 481 80 ALA ALA D . n D 2 82 VAL 82 482 81 VAL VAL D . n D 2 83 ALA 83 483 82 ALA ALA D . n D 2 84 ASP 84 484 83 ASP ASP D . n D 2 85 LEU 85 485 84 LEU LEU D . n D 2 86 PHE 86 486 85 PHE PHE D . n D 2 87 MET 87 487 86 MET MET D . n D 2 88 VAL 88 488 87 VAL VAL D . n D 2 89 PHE 89 489 88 PHE PHE D . n D 2 90 GLY 90 490 89 GLY GLY D . n D 2 91 GLY 91 491 90 GLY GLY D . n D 2 92 PHE 92 492 91 PHE PHE D . n D 2 93 THR 93 493 92 THR THR D . n D 2 94 THR 94 494 93 THR THR D . n D 2 95 THR 95 495 94 THR THR D . n D 2 96 LEU 96 496 95 LEU LEU D . n D 2 97 TYR 97 497 96 TYR TYR D . n D 2 98 THR 98 498 97 THR THR D . n D 2 99 SER 99 499 98 SER SER D . n D 2 100 LEU 100 500 99 LEU LEU D . n D 2 101 HIS 101 501 100 HIS HIS D . n D 2 102 GLY 102 502 101 GLY GLY D . n D 2 103 TYR 103 503 102 TYR TYR D . n D 2 104 PHE 104 504 103 PHE PHE D . n D 2 105 VAL 105 505 104 VAL VAL D . n D 2 106 PHE 106 506 105 PHE PHE D . n D 2 107 GLY 107 507 106 GLY GLY D . n D 2 108 PRO 108 508 107 PRO PRO D . n D 2 109 THR 109 509 108 THR THR D . n D 2 110 GLY 110 510 109 GLY GLY D . n D 2 111 CYS 111 511 110 CYS CYS D . n D 2 112 ASN 112 512 111 ASN ASN D . n D 2 113 LEU 113 513 112 LEU LEU D . n D 2 114 GLU 114 514 113 GLU GLU D . n D 2 115 GLY 115 515 114 GLY GLY D . n D 2 116 PHE 116 516 115 PHE PHE D . n D 2 117 PHE 117 517 116 PHE PHE D . n D 2 118 ALA 118 518 117 ALA ALA D . n D 2 119 THR 119 519 118 THR THR D . n D 2 120 LEU 120 520 119 LEU LEU D . n D 2 121 GLY 121 521 120 GLY GLY D . n D 2 122 GLY 122 522 121 GLY GLY D . n D 2 123 GLU 123 523 122 GLU GLU D . n D 2 124 ILE 124 524 123 ILE ILE D . n D 2 125 ALA 125 525 124 ALA ALA D . n D 2 126 LEU 126 526 125 LEU LEU D . n D 2 127 TRP 127 527 126 TRP TRP D . n D 2 128 SER 128 528 127 SER SER D . n D 2 129 LEU 129 529 128 LEU LEU D . n D 2 130 VAL 130 530 129 VAL VAL D . n D 2 131 VAL 131 531 130 VAL VAL D . n D 2 132 LEU 132 532 131 LEU LEU D . n D 2 133 ALA 133 533 132 ALA ALA D . n D 2 134 ILE 134 534 133 ILE ILE D . n D 2 135 GLU 135 535 134 GLU GLU D . n D 2 136 ARG 136 536 135 ARG ARG D . n D 2 137 TYR 137 537 136 TYR TYR D . n D 2 138 VAL 138 538 137 VAL VAL D . n D 2 139 VAL 139 539 138 VAL VAL D . n D 2 140 VAL 140 540 139 VAL VAL D . n D 2 141 CYS 141 541 140 CYS CYS D . n D 2 142 LYS 142 542 141 LYS LYS D . n D 2 143 PRO 143 543 142 PRO PRO D . n D 2 144 MET 144 544 143 MET MET D . n D 2 145 SER 145 545 144 SER SER D . n D 2 146 ASN 146 546 145 ASN ASN D . n D 2 147 PHE 147 547 146 PHE PHE D . n D 2 148 ARG 148 548 147 ARG ARG D . n D 2 149 PHE 149 549 148 PHE PHE D . n D 2 150 GLY 150 550 149 GLY GLY D . n D 2 151 GLU 151 551 150 GLU GLU D . n D 2 152 ASN 152 552 151 ASN ASN D . n D 2 153 HIS 153 553 152 HIS HIS D . n D 2 154 ALA 154 554 153 ALA ALA D . n D 2 155 ILE 155 555 154 ILE ILE D . n D 2 156 MET 156 556 155 MET MET D . n D 2 157 GLY 157 557 156 GLY GLY D . n D 2 158 VAL 158 558 157 VAL VAL D . n D 2 159 ALA 159 559 158 ALA ALA D . n D 2 160 PHE 160 560 159 PHE PHE D . n D 2 161 THR 161 561 160 THR THR D . n D 2 162 TRP 162 562 161 TRP TRP D . n D 2 163 VAL 163 563 162 VAL VAL D . n D 2 164 MET 164 564 163 MET MET D . n D 2 165 ALA 165 565 164 ALA ALA D . n D 2 166 LEU 166 566 165 LEU LEU D . n D 2 167 ALA 167 567 166 ALA ALA D . n D 2 168 CYS 168 568 167 CYS CYS D . n D 2 169 ALA 169 569 168 ALA ALA D . n D 2 170 ALA 170 570 169 ALA ALA D . n D 2 171 PRO 171 571 170 PRO PRO D . n D 2 172 PRO 172 572 171 PRO PRO D . n D 2 173 LEU 173 573 172 LEU LEU D . n D 2 174 VAL 174 574 173 VAL VAL D . n D 2 175 GLY 175 575 174 GLY GLY D . n D 2 176 TRP 176 576 175 TRP TRP D . n D 2 177 SER 177 577 176 SER SER D . n D 2 178 ARG 178 578 177 ARG ARG D . n D 2 179 TYR 179 579 178 TYR TYR D . n D 2 180 ILE 180 580 179 ILE ILE D . n D 2 181 PRO 181 581 180 PRO PRO D . n D 2 182 GLU 182 582 181 GLU GLU D . n D 2 183 GLY 183 583 182 GLY GLY D . n D 2 184 MET 184 584 183 MET MET D . n D 2 185 GLN 185 585 184 GLN GLN D . n D 2 186 CYS 186 586 185 CYS CYS D . n D 2 187 SER 187 587 186 SER SER D . n D 2 188 CYS 188 588 187 CYS CYS D . n D 2 189 GLY 189 589 188 GLY GLY D . n D 2 190 ILE 190 590 189 ILE ILE D . n D 2 191 ASP 191 591 190 ASP ASP D . n D 2 192 TYR 192 592 191 TYR TYR D . n D 2 193 TYR 193 593 192 TYR TYR D . n D 2 194 THR 194 594 193 THR THR D . n D 2 195 PRO 195 595 194 PRO PRO D . n D 2 196 HIS 196 596 195 HIS HIS D . n D 2 197 GLU 197 597 196 GLU GLU D . n D 2 198 GLU 198 598 197 GLU GLU D . n D 2 199 THR 199 599 198 THR THR D . n D 2 200 ASN 200 600 199 ASN ASN D . n D 2 201 ASN 201 601 200 ASN ASN D . n D 2 202 GLU 202 602 201 GLU GLU D . n D 2 203 SER 203 603 202 SER SER D . n D 2 204 PHE 204 604 203 PHE PHE D . n D 2 205 VAL 205 605 204 VAL VAL D . n D 2 206 ILE 206 606 205 ILE ILE D . n D 2 207 TYR 207 607 206 TYR TYR D . n D 2 208 MET 208 608 207 MET MET D . n D 2 209 PHE 209 609 208 PHE PHE D . n D 2 210 VAL 210 610 209 VAL VAL D . n D 2 211 VAL 211 611 210 VAL VAL D . n D 2 212 HIS 212 612 211 HIS HIS D . n D 2 213 PHE 213 613 212 PHE PHE D . n D 2 214 ILE 214 614 213 ILE ILE D . n D 2 215 ILE 215 615 214 ILE ILE D . n D 2 216 PRO 216 616 215 PRO PRO D . n D 2 217 LEU 217 617 216 LEU LEU D . n D 2 218 ILE 218 618 217 ILE ILE D . n D 2 219 VAL 219 619 218 VAL VAL D . n D 2 220 ILE 220 620 219 ILE ILE D . n D 2 221 PHE 221 621 220 PHE PHE D . n D 2 222 PHE 222 622 221 PHE PHE D . n D 2 223 CYS 223 623 222 CYS CYS D . n D 2 224 TYR 224 624 223 TYR TYR D . n D 2 225 GLY 225 625 224 GLY GLY D . n D 2 226 GLN 226 626 225 GLN GLN D . n D 2 227 LEU 227 627 226 LEU LEU D . n D 2 228 VAL 228 628 227 VAL VAL D . n D 2 229 PHE 229 629 228 PHE PHE D . n D 2 230 THR 230 630 229 THR THR D . n D 2 231 VAL 231 631 ? ? ? D . n D 2 232 LYS 232 632 ? ? ? D . n D 2 233 GLU 233 633 ? ? ? D . n D 2 234 ALA 234 634 ? ? ? D . n D 2 235 ALA 235 635 ? ? ? D . n D 2 236 ALA 236 636 ? ? ? D . n D 2 237 GLN 237 637 ? ? ? D . n D 2 238 GLN 238 638 ? ? ? D . n D 2 239 GLN 239 639 ? ? ? D . n D 2 240 GLU 240 640 ? ? ? D . n D 2 241 SER 241 641 ? ? ? D . n D 2 242 ALA 242 642 ? ? ? D . n D 2 243 THR 243 643 ? ? ? D . n D 2 244 THR 244 644 ? ? ? D . n D 2 245 GLN 245 645 244 GLN GLN D . n D 2 246 LYS 246 646 245 LYS LYS D . n D 2 247 ALA 247 647 246 ALA ALA D . n D 2 248 GLU 248 648 247 GLU GLU D . n D 2 249 LYS 249 649 248 LYS LYS D . n D 2 250 GLU 250 650 249 GLU GLU D . n D 2 251 VAL 251 651 250 VAL VAL D . n D 2 252 THR 252 652 251 THR THR D . n D 2 253 ARG 253 653 252 ARG ARG D . n D 2 254 MET 254 654 253 MET MET D . n D 2 255 VAL 255 655 254 VAL VAL D . n D 2 256 ILE 256 656 255 ILE ILE D . n D 2 257 ILE 257 657 256 ILE ILE D . n D 2 258 MET 258 658 257 MET MET D . n D 2 259 VAL 259 659 258 VAL VAL D . n D 2 260 ILE 260 660 259 ILE ILE D . n D 2 261 ALA 261 661 260 ALA ALA D . n D 2 262 PHE 262 662 261 PHE PHE D . n D 2 263 LEU 263 663 262 LEU LEU D . n D 2 264 ILE 264 664 263 ILE ILE D . n D 2 265 CYS 265 665 264 CYS CYS D . n D 2 266 TRP 266 666 265 TRP TRP D . n D 2 267 LEU 267 667 266 LEU LEU D . n D 2 268 PRO 268 668 267 PRO PRO D . n D 2 269 TYR 269 669 268 TYR TYR D . n D 2 270 ALA 270 670 269 ALA ALA D . n D 2 271 GLY 271 671 270 GLY GLY D . n D 2 272 VAL 272 672 271 VAL VAL D . n D 2 273 ALA 273 673 272 ALA ALA D . n D 2 274 PHE 274 674 273 PHE PHE D . n D 2 275 TYR 275 675 274 TYR TYR D . n D 2 276 ILE 276 676 275 ILE ILE D . n D 2 277 PHE 277 677 276 PHE PHE D . n D 2 278 THR 278 678 277 THR THR D . n D 2 279 HIS 279 679 278 HIS HIS D . n D 2 280 GLN 280 680 279 GLN GLN D . n D 2 281 GLY 281 681 280 GLY GLY D . n D 2 282 SER 282 682 281 SER SER D . n D 2 283 ASP 283 683 282 ASP ASP D . n D 2 284 PHE 284 684 283 PHE PHE D . n D 2 285 GLY 285 685 284 GLY GLY D . n D 2 286 PRO 286 686 285 PRO PRO D . n D 2 287 ILE 287 687 286 ILE ILE D . n D 2 288 PHE 288 688 287 PHE PHE D . n D 2 289 MET 289 689 288 MET MET D . n D 2 290 THR 290 690 289 THR THR D . n D 2 291 ILE 291 691 290 ILE ILE D . n D 2 292 PRO 292 692 291 PRO PRO D . n D 2 293 ALA 293 693 292 ALA ALA D . n D 2 294 PHE 294 694 293 PHE PHE D . n D 2 295 PHE 295 695 294 PHE PHE D . n D 2 296 ALA 296 696 295 ALA ALA D . n D 2 297 LYS 297 697 296 LYS LYS D . n D 2 298 THR 298 698 297 THR THR D . n D 2 299 SER 299 699 298 SER SER D . n D 2 300 ALA 300 700 299 ALA ALA D . n D 2 301 VAL 301 701 300 VAL VAL D . n D 2 302 TYR 302 702 301 TYR TYR D . n D 2 303 ASN 303 703 302 ASN ASN D . n D 2 304 PRO 304 704 303 PRO PRO D . n D 2 305 VAL 305 705 304 VAL VAL D . n D 2 306 ILE 306 706 305 ILE ILE D . n D 2 307 TYR 307 707 306 TYR TYR D . n D 2 308 ILE 308 708 307 ILE ILE D . n D 2 309 MET 309 709 308 MET MET D . n D 2 310 MET 310 710 309 MET MET D . n D 2 311 ASN 311 711 310 ASN ASN D . n D 2 312 LYS 312 712 311 LYS LYS D . n D 2 313 GLN 313 713 312 GLN GLN D . n D 2 314 PHE 314 714 313 PHE PHE D . n D 2 315 ARG 315 715 314 ARG ARG D . n D 2 316 ASN 316 716 315 ASN ASN D . n D 2 317 CYS 317 717 316 CYS CYS D . n D 2 318 MET 318 718 317 MET MET D . n D 2 319 VAL 319 719 318 VAL VAL D . n D 2 320 THR 320 720 319 THR THR D . n D 2 321 THR 321 721 320 THR THR D . n D 2 322 LEU 322 722 321 LEU LEU D . n D 2 323 CYS 323 723 322 CYS CYS D . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 3 NAG 1 E NAG 1 B NAG 407 n E 3 NAG 2 E NAG 2 B NAG 408 n E 3 BMA 3 E BMA 3 B BMA 409 n F 3 NAG 1 F NAG 1 B NAG 410 n F 3 NAG 2 F NAG 2 B NAG 411 n F 3 BMA 3 F BMA 3 B BMA 412 n G 4 NAG 1 G NAG 1 D NAG 407 n G 4 NAG 2 G NAG 2 D NAG 408 n H 4 NAG 1 H NAG 1 D NAG 410 n H 4 NAG 2 H NAG 2 D NAG 411 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 RET 1 801 402 RET RET B . J 5 RET 1 801 402 RET RET D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 468 ? CE ? C LYS 68 CE 2 1 Y 1 B LYS 468 ? NZ ? C LYS 68 NZ 3 1 Y 1 B PHE 629 ? CG ? C PHE 229 CG 4 1 Y 1 B PHE 629 ? CD1 ? C PHE 229 CD1 5 1 Y 1 B PHE 629 ? CD2 ? C PHE 229 CD2 6 1 Y 1 B PHE 629 ? CE1 ? C PHE 229 CE1 7 1 Y 1 B PHE 629 ? CE2 ? C PHE 229 CE2 8 1 Y 1 B PHE 629 ? CZ ? C PHE 229 CZ 9 1 Y 1 B THR 630 ? OG1 ? C THR 230 OG1 10 1 Y 1 B THR 630 ? CG2 ? C THR 230 CG2 11 1 Y 1 B GLN 645 ? CD ? C GLN 245 CD 12 1 Y 1 B GLN 645 ? OE1 ? C GLN 245 OE1 13 1 Y 1 B GLN 645 ? NE2 ? C GLN 245 NE2 14 1 Y 1 B LYS 646 ? CE ? C LYS 246 CE 15 1 Y 1 B LYS 646 ? NZ ? C LYS 246 NZ 16 1 Y 1 D LYS 468 ? CE ? D LYS 68 CE 17 1 Y 1 D LYS 468 ? NZ ? D LYS 68 NZ 18 1 Y 1 D PHE 629 ? CG ? D PHE 229 CG 19 1 Y 1 D PHE 629 ? CD1 ? D PHE 229 CD1 20 1 Y 1 D PHE 629 ? CD2 ? D PHE 229 CD2 21 1 Y 1 D PHE 629 ? CE1 ? D PHE 229 CE1 22 1 Y 1 D PHE 629 ? CE2 ? D PHE 229 CE2 23 1 Y 1 D PHE 629 ? CZ ? D PHE 229 CZ 24 1 Y 1 D THR 630 ? OG1 ? D THR 230 OG1 25 1 Y 1 D THR 630 ? CG2 ? D THR 230 CG2 26 1 Y 1 D GLN 645 ? CD ? D GLN 245 CD 27 1 Y 1 D GLN 645 ? OE1 ? D GLN 245 OE1 28 1 Y 1 D GLN 645 ? NE2 ? D GLN 245 NE2 29 1 Y 1 D LYS 646 ? CE ? D LYS 246 CE 30 1 Y 1 D LYS 646 ? NZ ? D LYS 246 NZ # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9NYX _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9NYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9NYX _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9NYX _struct.title 'Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9NYX _struct_keywords.text 'nanoboy, rhodopsin, native purification, dark state, retinal, ISOMERASE-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'ISOMERASE/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9NYX 9NYX ? 1 ? 1 2 UNP OPSD_BOVIN P02699 ? 2 ;MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LC ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9NYX A 1 ? 122 ? 9NYX 2 ? 503 ? 2 503 2 1 9NYX C 1 ? 122 ? 9NYX 2 ? 503 ? 2 503 3 2 9NYX B 2 ? 323 ? P02699 1 ? 322 ? 402 723 4 2 9NYX D 2 ? 323 ? P02699 1 ? 322 ? 402 723 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 9NYX ACE B 1 ? UNP P02699 ? ? acetylation 401 1 4 9NYX ACE D 1 ? UNP P02699 ? ? acetylation 401 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 80 ? ASP A 83 ? ASN A 461 ASP A 464 5 ? 4 HELX_P HELX_P2 AA2 LYS A 93 ? THR A 97 ? LYS A 474 THR A 478 5 ? 5 HELX_P HELX_P3 AA3 LYS B 93 ? THR B 97 ? LYS C 474 THR C 478 5 ? 5 HELX_P HELX_P4 AA4 SER C 15 ? GLY C 19 ? SER B 415 GLY B 419 5 ? 5 HELX_P HELX_P5 AA5 GLU C 34 ? HIS C 66 ? GLU B 434 HIS B 466 1 ? 33 HELX_P HELX_P6 AA6 THR C 71 ? GLY C 102 ? THR B 471 GLY B 502 1 ? 32 HELX_P HELX_P7 AA7 GLY C 107 ? CYS C 141 ? GLY B 507 CYS B 541 1 ? 35 HELX_P HELX_P8 AA8 GLU C 151 ? ALA C 170 ? GLU B 551 ALA B 570 1 ? 20 HELX_P HELX_P9 AA9 ALA C 170 ? GLY C 175 ? ALA B 570 GLY B 575 1 ? 6 HELX_P HELX_P10 AB1 ASN C 200 ? HIS C 212 ? ASN B 600 HIS B 612 1 ? 13 HELX_P HELX_P11 AB2 PHE C 213 ? PHE C 229 ? PHE B 613 PHE B 629 1 ? 17 HELX_P HELX_P12 AB3 LYS C 246 ? HIS C 279 ? LYS B 646 HIS B 679 1 ? 34 HELX_P HELX_P13 AB4 PRO C 286 ? LYS C 297 ? PRO B 686 LYS B 697 1 ? 12 HELX_P HELX_P14 AB5 THR C 298 ? MET C 310 ? THR B 698 MET B 710 1 ? 13 HELX_P HELX_P15 AB6 ASN C 311 ? LEU C 322 ? ASN B 711 LEU B 722 1 ? 12 HELX_P HELX_P16 AB7 SER D 15 ? GLY D 19 ? SER D 415 GLY D 419 5 ? 5 HELX_P HELX_P17 AB8 GLU D 34 ? HIS D 66 ? GLU D 434 HIS D 466 1 ? 33 HELX_P HELX_P18 AB9 THR D 71 ? GLY D 102 ? THR D 471 GLY D 502 1 ? 32 HELX_P HELX_P19 AC1 GLY D 107 ? LYS D 142 ? GLY D 507 LYS D 542 1 ? 36 HELX_P HELX_P20 AC2 GLY D 150 ? ALA D 170 ? GLY D 550 ALA D 570 1 ? 21 HELX_P HELX_P21 AC3 ALA D 170 ? GLY D 175 ? ALA D 570 GLY D 575 1 ? 6 HELX_P HELX_P22 AC4 ASN D 200 ? HIS D 212 ? ASN D 600 HIS D 612 1 ? 13 HELX_P HELX_P23 AC5 PHE D 213 ? THR D 230 ? PHE D 613 THR D 630 1 ? 18 HELX_P HELX_P24 AC6 LYS D 246 ? THR D 278 ? LYS D 646 THR D 678 1 ? 33 HELX_P HELX_P25 AC7 MET D 289 ? LYS D 297 ? MET D 689 LYS D 697 1 ? 9 HELX_P HELX_P26 AC8 THR D 298 ? MET D 310 ? THR D 698 MET D 710 1 ? 13 HELX_P HELX_P27 AC9 ASN D 311 ? THR D 321 ? ASN D 711 THR D 721 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 102 SG ? ? A CYS 409 A CYS 483 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 102 SG ? ? C CYS 409 C CYS 483 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? C CYS 111 SG ? ? ? 1_555 C CYS 188 SG ? ? B CYS 511 B CYS 588 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? D CYS 111 SG ? ? ? 1_555 D CYS 188 SG ? ? D CYS 511 D CYS 588 1_555 ? ? ? ? ? ? ? 2.027 ? ? covale1 covale both ? C ACE 1 C ? ? ? 1_555 C MET 2 N ? ? B ACE 401 B MET 402 1_555 ? ? ? ? ? ? ? 1.486 ? ? covale2 covale one ? C ASN 3 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 403 E NAG 1 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale3 covale one ? C ASN 16 ND2 ? ? ? 1_555 F NAG . C1 ? ? B ASN 416 F NAG 1 1_555 ? ? ? ? ? ? ? 1.446 ? N-Glycosylation covale4 covale one ? C LYS 297 NZ ? ? ? 1_555 I RET . C15 ? ? B LYS 697 B RET 801 1_555 ? ? ? ? ? ? ? 1.447 ? ? covale5 covale both ? D ACE 1 C ? ? ? 1_555 D MET 2 N ? ? D ACE 401 D MET 402 1_555 ? ? ? ? ? ? ? 1.470 ? ? covale6 covale one ? D ASN 3 ND2 ? ? ? 1_555 G NAG . C1 ? ? D ASN 403 G NAG 1 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation covale7 covale one ? D ASN 16 ND2 ? ? ? 1_555 H NAG . C1 ? ? D ASN 416 H NAG 1 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation covale8 covale one ? D LYS 297 NZ ? ? ? 1_555 J RET . C15 ? ? D LYS 697 D RET 801 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale9 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale10 covale both ? E NAG . O4 ? ? ? 1_555 E BMA . C1 ? ? E NAG 2 E BMA 3 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale11 covale both ? F NAG . O4 ? ? ? 1_555 F NAG . C1 ? ? F NAG 1 F NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale12 covale both ? F NAG . O4 ? ? ? 1_555 F BMA . C1 ? ? F NAG 2 F BMA 3 1_555 ? ? ? ? ? ? ? 1.447 ? ? covale13 covale both ? G NAG . O4 ? ? ? 1_555 G NAG . C1 ? ? G NAG 1 G NAG 2 1_555 ? ? ? ? ? ? ? 1.453 ? ? covale14 covale both ? H NAG . O4 ? ? ? 1_555 H NAG . C1 ? ? H NAG 1 H NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE C 1 ? MET C 2 ? ACE B 401 ? 1_555 MET B 402 ? 1_555 . . MET 4 ACE None 'Terminal acetylation' 2 ACE D 1 ? MET D 2 ? ACE D 401 ? 1_555 MET D 402 ? 1_555 . . MET 4 ACE None 'Terminal acetylation' 3 NAG E . ? ASN C 3 ? NAG E 1 ? 1_555 ASN B 403 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 NAG F . ? ASN C 16 ? NAG F 1 ? 1_555 ASN B 416 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 5 NAG G . ? ASN D 3 ? NAG G 1 ? 1_555 ASN D 403 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 6 NAG H . ? ASN D 16 ? NAG H 1 ? 1_555 ASN D 416 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 7 RET I . ? LYS C 297 ? RET B 801 ? 1_555 LYS B 697 ? 1_555 C15 NZ LYS 1 RET Retinoylation Lipid/lipid-like 8 RET J . ? LYS D 297 ? RET D 801 ? 1_555 LYS D 697 ? 1_555 C15 NZ LYS 1 RET Retinoylation Lipid/lipid-like 9 CYS A 28 ? CYS A 102 ? CYS A 409 ? 1_555 CYS A 483 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS B 28 ? CYS B 102 ? CYS C 409 ? 1_555 CYS C 483 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS C 111 ? CYS C 188 ? CYS B 511 ? 1_555 CYS B 588 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS D 111 ? CYS D 188 ? CYS D 511 ? 1_555 CYS D 588 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 2 ? AA6 ? 2 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 52 ? GLY A 56 ? GLU A 433 GLY A 437 AA1 2 ASN A 41 ? GLN A 45 ? ASN A 422 GLN A 426 AA1 3 ALA A 98 ? SER A 103 ? ALA A 479 SER A 484 AA1 4 THR A 117 ? VAL A 119 ? THR A 498 VAL A 500 AA2 1 SER A 77 ? ASP A 79 ? SER A 458 ASP A 460 AA2 2 THR A 84 ? TYR A 86 ? THR A 465 TYR A 467 AA3 1 LEU B 24 ? CYS B 28 ? LEU C 405 CYS C 409 AA3 2 LEU B 85 ? MET B 89 ? LEU C 466 MET C 470 AA3 3 PHE B 74 ? SER B 77 ? PHE C 455 SER C 458 AA4 1 LEU B 51 ? TRP B 53 ? LEU C 432 TRP C 434 AA4 2 ASN B 41 ? GLN B 45 ? ASN C 422 GLN C 426 AA4 3 VAL B 99 ? SER B 103 ? VAL C 480 SER C 484 AA4 4 THR B 117 ? GLN B 118 ? THR C 498 GLN C 499 AA5 1 THR C 5 ? GLY C 7 ? THR B 405 GLY B 407 AA5 2 PHE C 10 ? VAL C 12 ? PHE B 410 VAL B 412 AA6 1 TYR C 179 ? GLU C 182 ? TYR B 579 GLU B 582 AA6 2 SER C 187 ? ILE C 190 ? SER B 587 ILE B 590 AA7 1 TYR D 179 ? GLU D 182 ? TYR D 579 GLU D 582 AA7 2 SER D 187 ? ILE D 190 ? SER D 587 ILE D 590 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O SER A 55 ? O SER A 436 N TRP A 42 ? N TRP A 423 AA1 2 3 N VAL A 43 ? N VAL A 424 O TYR A 101 ? O TYR A 482 AA1 3 4 N ALA A 98 ? N ALA A 479 O VAL A 119 ? O VAL A 500 AA2 1 2 N ASP A 79 ? N ASP A 460 O THR A 84 ? O THR A 465 AA3 1 2 N CYS B 28 ? N CYS C 409 O LEU B 85 ? O LEU C 466 AA3 2 3 O TYR B 86 ? O TYR C 467 N SER B 77 ? N SER C 458 AA4 1 2 O GLU B 52 ? O GLU C 433 N ARG B 44 ? N ARG C 425 AA4 2 3 N ASN B 41 ? N ASN C 422 O SER B 103 ? O SER C 484 AA4 3 4 N TYR B 100 ? N TYR C 481 O THR B 117 ? O THR C 498 AA5 1 2 N GLY C 7 ? N GLY B 407 O PHE C 10 ? O PHE B 410 AA6 1 2 N ILE C 180 ? N ILE B 580 O GLY C 189 ? O GLY B 589 AA7 1 2 N ILE D 180 ? N ILE D 580 O GLY D 189 ? O GLY D 589 # _pdbx_entry_details.entry_id 9NYX _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 ACE _pdbx_validate_rmsd_bond.auth_seq_id_1 401 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 MET _pdbx_validate_rmsd_bond.auth_seq_id_2 402 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.486 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.150 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 5 ? ? 71.96 114.43 2 1 LYS A 430 ? ? -176.62 -172.15 3 1 SER A 443 ? ? -79.37 -159.52 4 1 TYR A 444 ? ? -32.64 129.15 5 1 ALA A 448 ? ? -63.99 -76.19 6 1 ASP A 449 ? ? -138.69 -39.67 7 1 GLN A 469 ? ? -69.83 96.26 8 1 VAL C 5 ? ? 71.28 -145.25 9 1 GLU C 6 ? ? 75.32 170.97 10 1 SER C 7 ? ? 67.56 160.75 11 1 ASP C 441 ? ? -91.67 42.35 12 1 ASP C 449 ? ? 35.40 -88.34 13 1 VAL B 421 ? ? 84.27 121.59 14 1 PRO B 543 ? ? -103.28 -102.60 15 1 SER B 545 ? ? 44.42 -108.70 16 1 PHE B 547 ? ? 59.57 173.68 17 1 ASN B 600 ? ? 61.83 62.36 18 1 ASP B 683 ? ? -90.34 31.59 19 1 MET B 689 ? ? 155.75 -46.23 20 1 ALA B 700 ? ? -92.28 45.19 21 1 VAL B 701 ? ? -133.22 -52.57 22 1 VAL D 421 ? ? 98.30 108.02 23 1 LYS D 468 ? ? 73.19 -63.75 24 1 LEU D 469 ? ? -57.03 108.43 25 1 MET D 544 ? ? 54.82 -150.97 26 1 ASN D 546 ? ? -168.46 -85.39 27 1 PHE D 549 ? ? 57.82 -98.12 28 1 VAL D 574 ? ? -94.25 -68.75 29 1 SER D 577 ? ? 66.33 178.68 30 1 VAL D 610 ? ? -90.48 -61.70 31 1 PHE D 688 ? ? -132.75 -38.73 32 1 ALA D 700 ? ? -92.83 44.07 33 1 VAL D 701 ? ? -133.19 -53.42 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9NYX _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9NYX _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 112705 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Bovin Rhodopsin in complex with Megabody 7 in dark state' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9NYX _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 10 _em_imaging.nominal_defocus_max 6000 _em_imaging.calibrated_defocus_min 8000 _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9NYX _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9NYX _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 2 ? A VAL 1 2 1 Y 1 A VAL 392 ? A VAL 11 3 1 Y 1 A UNK 393 ? A UNK 12 4 1 Y 1 A UNK 394 ? A UNK 13 5 1 Y 1 A UNK 395 ? A UNK 14 6 1 Y 1 A UNK 396 ? A UNK 15 7 1 Y 1 A UNK 397 ? A UNK 16 8 1 Y 1 A UNK 398 ? A UNK 17 9 1 Y 1 A UNK 399 ? A UNK 18 10 1 Y 1 A UNK 400 ? A UNK 19 11 1 Y 1 A UNK 401 ? A UNK 20 12 1 Y 1 A UNK 402 ? A UNK 21 13 1 Y 1 A UNK 403 ? A UNK 22 14 1 Y 1 C UNK 393 ? B UNK 12 15 1 Y 1 C UNK 394 ? B UNK 13 16 1 Y 1 C UNK 395 ? B UNK 14 17 1 Y 1 C UNK 396 ? B UNK 15 18 1 Y 1 C UNK 397 ? B UNK 16 19 1 Y 1 C UNK 398 ? B UNK 17 20 1 Y 1 C UNK 399 ? B UNK 18 21 1 Y 1 C UNK 400 ? B UNK 19 22 1 Y 1 C UNK 401 ? B UNK 20 23 1 Y 1 C UNK 402 ? B UNK 21 24 1 Y 1 C UNK 403 ? B UNK 22 25 1 Y 1 B VAL 631 ? C VAL 231 26 1 Y 1 B LYS 632 ? C LYS 232 27 1 Y 1 B GLU 633 ? C GLU 233 28 1 Y 1 B ALA 634 ? C ALA 234 29 1 Y 1 B ALA 635 ? C ALA 235 30 1 Y 1 B ALA 636 ? C ALA 236 31 1 Y 1 B GLN 637 ? C GLN 237 32 1 Y 1 B GLN 638 ? C GLN 238 33 1 Y 1 B GLN 639 ? C GLN 239 34 1 Y 1 B GLU 640 ? C GLU 240 35 1 Y 1 B SER 641 ? C SER 241 36 1 Y 1 B ALA 642 ? C ALA 242 37 1 Y 1 B THR 643 ? C THR 243 38 1 Y 1 B THR 644 ? C THR 244 39 1 Y 1 D VAL 631 ? D VAL 231 40 1 Y 1 D LYS 632 ? D LYS 232 41 1 Y 1 D GLU 633 ? D GLU 233 42 1 Y 1 D ALA 634 ? D ALA 234 43 1 Y 1 D ALA 635 ? D ALA 235 44 1 Y 1 D ALA 636 ? D ALA 236 45 1 Y 1 D GLN 637 ? D GLN 237 46 1 Y 1 D GLN 638 ? D GLN 238 47 1 Y 1 D GLN 639 ? D GLN 239 48 1 Y 1 D GLU 640 ? D GLU 240 49 1 Y 1 D SER 641 ? D SER 241 50 1 Y 1 D ALA 642 ? D ALA 242 51 1 Y 1 D THR 643 ? D THR 243 52 1 Y 1 D THR 644 ? D THR 244 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 BMA C1 C N R 81 BMA C2 C N S 82 BMA C3 C N S 83 BMA C4 C N S 84 BMA C5 C N R 85 BMA C6 C N N 86 BMA O1 O N N 87 BMA O2 O N N 88 BMA O3 O N N 89 BMA O4 O N N 90 BMA O5 O N N 91 BMA O6 O N N 92 BMA H1 H N N 93 BMA H2 H N N 94 BMA H3 H N N 95 BMA H4 H N N 96 BMA H5 H N N 97 BMA H61 H N N 98 BMA H62 H N N 99 BMA HO1 H N N 100 BMA HO2 H N N 101 BMA HO3 H N N 102 BMA HO4 H N N 103 BMA HO6 H N N 104 CYS N N N N 105 CYS CA C N R 106 CYS C C N N 107 CYS O O N N 108 CYS CB C N N 109 CYS SG S N N 110 CYS OXT O N N 111 CYS H H N N 112 CYS H2 H N N 113 CYS HA H N N 114 CYS HB2 H N N 115 CYS HB3 H N N 116 CYS HG H N N 117 CYS HXT H N N 118 GLN N N N N 119 GLN CA C N S 120 GLN C C N N 121 GLN O O N N 122 GLN CB C N N 123 GLN CG C N N 124 GLN CD C N N 125 GLN OE1 O N N 126 GLN NE2 N N N 127 GLN OXT O N N 128 GLN H H N N 129 GLN H2 H N N 130 GLN HA H N N 131 GLN HB2 H N N 132 GLN HB3 H N N 133 GLN HG2 H N N 134 GLN HG3 H N N 135 GLN HE21 H N N 136 GLN HE22 H N N 137 GLN HXT H N N 138 GLU N N N N 139 GLU CA C N S 140 GLU C C N N 141 GLU O O N N 142 GLU CB C N N 143 GLU CG C N N 144 GLU CD C N N 145 GLU OE1 O N N 146 GLU OE2 O N N 147 GLU OXT O N N 148 GLU H H N N 149 GLU H2 H N N 150 GLU HA H N N 151 GLU HB2 H N N 152 GLU HB3 H N N 153 GLU HG2 H N N 154 GLU HG3 H N N 155 GLU HE2 H N N 156 GLU HXT H N N 157 GLY N N N N 158 GLY CA C N N 159 GLY C C N N 160 GLY O O N N 161 GLY OXT O N N 162 GLY H H N N 163 GLY H2 H N N 164 GLY HA2 H N N 165 GLY HA3 H N N 166 GLY HXT H N N 167 HIS N N N N 168 HIS CA C N S 169 HIS C C N N 170 HIS O O N N 171 HIS CB C N N 172 HIS CG C Y N 173 HIS ND1 N Y N 174 HIS CD2 C Y N 175 HIS CE1 C Y N 176 HIS NE2 N Y N 177 HIS OXT O N N 178 HIS H H N N 179 HIS H2 H N N 180 HIS HA H N N 181 HIS HB2 H N N 182 HIS HB3 H N N 183 HIS HD1 H N N 184 HIS HD2 H N N 185 HIS HE1 H N N 186 HIS HE2 H N N 187 HIS HXT H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 NAG C1 C N R 278 NAG C2 C N R 279 NAG C3 C N R 280 NAG C4 C N S 281 NAG C5 C N R 282 NAG C6 C N N 283 NAG C7 C N N 284 NAG C8 C N N 285 NAG N2 N N N 286 NAG O1 O N N 287 NAG O3 O N N 288 NAG O4 O N N 289 NAG O5 O N N 290 NAG O6 O N N 291 NAG O7 O N N 292 NAG H1 H N N 293 NAG H2 H N N 294 NAG H3 H N N 295 NAG H4 H N N 296 NAG H5 H N N 297 NAG H61 H N N 298 NAG H62 H N N 299 NAG H81 H N N 300 NAG H82 H N N 301 NAG H83 H N N 302 NAG HN2 H N N 303 NAG HO1 H N N 304 NAG HO3 H N N 305 NAG HO4 H N N 306 NAG HO6 H N N 307 PHE N N N N 308 PHE CA C N S 309 PHE C C N N 310 PHE O O N N 311 PHE CB C N N 312 PHE CG C Y N 313 PHE CD1 C Y N 314 PHE CD2 C Y N 315 PHE CE1 C Y N 316 PHE CE2 C Y N 317 PHE CZ C Y N 318 PHE OXT O N N 319 PHE H H N N 320 PHE H2 H N N 321 PHE HA H N N 322 PHE HB2 H N N 323 PHE HB3 H N N 324 PHE HD1 H N N 325 PHE HD2 H N N 326 PHE HE1 H N N 327 PHE HE2 H N N 328 PHE HZ H N N 329 PHE HXT H N N 330 PRO N N N N 331 PRO CA C N S 332 PRO C C N N 333 PRO O O N N 334 PRO CB C N N 335 PRO CG C N N 336 PRO CD C N N 337 PRO OXT O N N 338 PRO H H N N 339 PRO HA H N N 340 PRO HB2 H N N 341 PRO HB3 H N N 342 PRO HG2 H N N 343 PRO HG3 H N N 344 PRO HD2 H N N 345 PRO HD3 H N N 346 PRO HXT H N N 347 RET C1 C N N 348 RET C2 C N N 349 RET C3 C N N 350 RET C4 C N N 351 RET C5 C N N 352 RET C6 C N N 353 RET C7 C N N 354 RET C8 C N N 355 RET C9 C N N 356 RET C10 C N N 357 RET C11 C N N 358 RET C12 C N N 359 RET C13 C N N 360 RET C14 C N N 361 RET C15 C N N 362 RET O1 O N N 363 RET C16 C N N 364 RET C17 C N N 365 RET C18 C N N 366 RET C19 C N N 367 RET C20 C N N 368 RET H21 H N N 369 RET H22 H N N 370 RET H31 H N N 371 RET H32 H N N 372 RET H41 H N N 373 RET H42 H N N 374 RET H7 H N N 375 RET H8 H N N 376 RET H10 H N N 377 RET H11 H N N 378 RET H12 H N N 379 RET H14 H N N 380 RET H15 H N N 381 RET H161 H N N 382 RET H162 H N N 383 RET H163 H N N 384 RET H171 H N N 385 RET H172 H N N 386 RET H173 H N N 387 RET H181 H N N 388 RET H182 H N N 389 RET H183 H N N 390 RET H191 H N N 391 RET H192 H N N 392 RET H193 H N N 393 RET H201 H N N 394 RET H202 H N N 395 RET H203 H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TRP N N N N 428 TRP CA C N S 429 TRP C C N N 430 TRP O O N N 431 TRP CB C N N 432 TRP CG C Y N 433 TRP CD1 C Y N 434 TRP CD2 C Y N 435 TRP NE1 N Y N 436 TRP CE2 C Y N 437 TRP CE3 C Y N 438 TRP CZ2 C Y N 439 TRP CZ3 C Y N 440 TRP CH2 C Y N 441 TRP OXT O N N 442 TRP H H N N 443 TRP H2 H N N 444 TRP HA H N N 445 TRP HB2 H N N 446 TRP HB3 H N N 447 TRP HD1 H N N 448 TRP HE1 H N N 449 TRP HE3 H N N 450 TRP HZ2 H N N 451 TRP HZ3 H N N 452 TRP HH2 H N N 453 TRP HXT H N N 454 TYR N N N N 455 TYR CA C N S 456 TYR C C N N 457 TYR O O N N 458 TYR CB C N N 459 TYR CG C Y N 460 TYR CD1 C Y N 461 TYR CD2 C Y N 462 TYR CE1 C Y N 463 TYR CE2 C Y N 464 TYR CZ C Y N 465 TYR OH O N N 466 TYR OXT O N N 467 TYR H H N N 468 TYR H2 H N N 469 TYR HA H N N 470 TYR HB2 H N N 471 TYR HB3 H N N 472 TYR HD1 H N N 473 TYR HD2 H N N 474 TYR HE1 H N N 475 TYR HE2 H N N 476 TYR HH H N N 477 TYR HXT H N N 478 VAL N N N N 479 VAL CA C N S 480 VAL C C N N 481 VAL O O N N 482 VAL CB C N N 483 VAL CG1 C N N 484 VAL CG2 C N N 485 VAL OXT O N N 486 VAL H H N N 487 VAL H2 H N N 488 VAL HA H N N 489 VAL HB H N N 490 VAL HG11 H N N 491 VAL HG12 H N N 492 VAL HG13 H N N 493 VAL HG21 H N N 494 VAL HG22 H N N 495 VAL HG23 H N N 496 VAL HXT H N N 497 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 BMA C1 C2 sing N N 76 BMA C1 O1 sing N N 77 BMA C1 O5 sing N N 78 BMA C1 H1 sing N N 79 BMA C2 C3 sing N N 80 BMA C2 O2 sing N N 81 BMA C2 H2 sing N N 82 BMA C3 C4 sing N N 83 BMA C3 O3 sing N N 84 BMA C3 H3 sing N N 85 BMA C4 C5 sing N N 86 BMA C4 O4 sing N N 87 BMA C4 H4 sing N N 88 BMA C5 C6 sing N N 89 BMA C5 O5 sing N N 90 BMA C5 H5 sing N N 91 BMA C6 O6 sing N N 92 BMA C6 H61 sing N N 93 BMA C6 H62 sing N N 94 BMA O1 HO1 sing N N 95 BMA O2 HO2 sing N N 96 BMA O3 HO3 sing N N 97 BMA O4 HO4 sing N N 98 BMA O6 HO6 sing N N 99 CYS N CA sing N N 100 CYS N H sing N N 101 CYS N H2 sing N N 102 CYS CA C sing N N 103 CYS CA CB sing N N 104 CYS CA HA sing N N 105 CYS C O doub N N 106 CYS C OXT sing N N 107 CYS CB SG sing N N 108 CYS CB HB2 sing N N 109 CYS CB HB3 sing N N 110 CYS SG HG sing N N 111 CYS OXT HXT sing N N 112 GLN N CA sing N N 113 GLN N H sing N N 114 GLN N H2 sing N N 115 GLN CA C sing N N 116 GLN CA CB sing N N 117 GLN CA HA sing N N 118 GLN C O doub N N 119 GLN C OXT sing N N 120 GLN CB CG sing N N 121 GLN CB HB2 sing N N 122 GLN CB HB3 sing N N 123 GLN CG CD sing N N 124 GLN CG HG2 sing N N 125 GLN CG HG3 sing N N 126 GLN CD OE1 doub N N 127 GLN CD NE2 sing N N 128 GLN NE2 HE21 sing N N 129 GLN NE2 HE22 sing N N 130 GLN OXT HXT sing N N 131 GLU N CA sing N N 132 GLU N H sing N N 133 GLU N H2 sing N N 134 GLU CA C sing N N 135 GLU CA CB sing N N 136 GLU CA HA sing N N 137 GLU C O doub N N 138 GLU C OXT sing N N 139 GLU CB CG sing N N 140 GLU CB HB2 sing N N 141 GLU CB HB3 sing N N 142 GLU CG CD sing N N 143 GLU CG HG2 sing N N 144 GLU CG HG3 sing N N 145 GLU CD OE1 doub N N 146 GLU CD OE2 sing N N 147 GLU OE2 HE2 sing N N 148 GLU OXT HXT sing N N 149 GLY N CA sing N N 150 GLY N H sing N N 151 GLY N H2 sing N N 152 GLY CA C sing N N 153 GLY CA HA2 sing N N 154 GLY CA HA3 sing N N 155 GLY C O doub N N 156 GLY C OXT sing N N 157 GLY OXT HXT sing N N 158 HIS N CA sing N N 159 HIS N H sing N N 160 HIS N H2 sing N N 161 HIS CA C sing N N 162 HIS CA CB sing N N 163 HIS CA HA sing N N 164 HIS C O doub N N 165 HIS C OXT sing N N 166 HIS CB CG sing N N 167 HIS CB HB2 sing N N 168 HIS CB HB3 sing N N 169 HIS CG ND1 sing Y N 170 HIS CG CD2 doub Y N 171 HIS ND1 CE1 doub Y N 172 HIS ND1 HD1 sing N N 173 HIS CD2 NE2 sing Y N 174 HIS CD2 HD2 sing N N 175 HIS CE1 NE2 sing Y N 176 HIS CE1 HE1 sing N N 177 HIS NE2 HE2 sing N N 178 HIS OXT HXT sing N N 179 ILE N CA sing N N 180 ILE N H sing N N 181 ILE N H2 sing N N 182 ILE CA C sing N N 183 ILE CA CB sing N N 184 ILE CA HA sing N N 185 ILE C O doub N N 186 ILE C OXT sing N N 187 ILE CB CG1 sing N N 188 ILE CB CG2 sing N N 189 ILE CB HB sing N N 190 ILE CG1 CD1 sing N N 191 ILE CG1 HG12 sing N N 192 ILE CG1 HG13 sing N N 193 ILE CG2 HG21 sing N N 194 ILE CG2 HG22 sing N N 195 ILE CG2 HG23 sing N N 196 ILE CD1 HD11 sing N N 197 ILE CD1 HD12 sing N N 198 ILE CD1 HD13 sing N N 199 ILE OXT HXT sing N N 200 LEU N CA sing N N 201 LEU N H sing N N 202 LEU N H2 sing N N 203 LEU CA C sing N N 204 LEU CA CB sing N N 205 LEU CA HA sing N N 206 LEU C O doub N N 207 LEU C OXT sing N N 208 LEU CB CG sing N N 209 LEU CB HB2 sing N N 210 LEU CB HB3 sing N N 211 LEU CG CD1 sing N N 212 LEU CG CD2 sing N N 213 LEU CG HG sing N N 214 LEU CD1 HD11 sing N N 215 LEU CD1 HD12 sing N N 216 LEU CD1 HD13 sing N N 217 LEU CD2 HD21 sing N N 218 LEU CD2 HD22 sing N N 219 LEU CD2 HD23 sing N N 220 LEU OXT HXT sing N N 221 LYS N CA sing N N 222 LYS N H sing N N 223 LYS N H2 sing N N 224 LYS CA C sing N N 225 LYS CA CB sing N N 226 LYS CA HA sing N N 227 LYS C O doub N N 228 LYS C OXT sing N N 229 LYS CB CG sing N N 230 LYS CB HB2 sing N N 231 LYS CB HB3 sing N N 232 LYS CG CD sing N N 233 LYS CG HG2 sing N N 234 LYS CG HG3 sing N N 235 LYS CD CE sing N N 236 LYS CD HD2 sing N N 237 LYS CD HD3 sing N N 238 LYS CE NZ sing N N 239 LYS CE HE2 sing N N 240 LYS CE HE3 sing N N 241 LYS NZ HZ1 sing N N 242 LYS NZ HZ2 sing N N 243 LYS NZ HZ3 sing N N 244 LYS OXT HXT sing N N 245 MET N CA sing N N 246 MET N H sing N N 247 MET N H2 sing N N 248 MET CA C sing N N 249 MET CA CB sing N N 250 MET CA HA sing N N 251 MET C O doub N N 252 MET C OXT sing N N 253 MET CB CG sing N N 254 MET CB HB2 sing N N 255 MET CB HB3 sing N N 256 MET CG SD sing N N 257 MET CG HG2 sing N N 258 MET CG HG3 sing N N 259 MET SD CE sing N N 260 MET CE HE1 sing N N 261 MET CE HE2 sing N N 262 MET CE HE3 sing N N 263 MET OXT HXT sing N N 264 NAG C1 C2 sing N N 265 NAG C1 O1 sing N N 266 NAG C1 O5 sing N N 267 NAG C1 H1 sing N N 268 NAG C2 C3 sing N N 269 NAG C2 N2 sing N N 270 NAG C2 H2 sing N N 271 NAG C3 C4 sing N N 272 NAG C3 O3 sing N N 273 NAG C3 H3 sing N N 274 NAG C4 C5 sing N N 275 NAG C4 O4 sing N N 276 NAG C4 H4 sing N N 277 NAG C5 C6 sing N N 278 NAG C5 O5 sing N N 279 NAG C5 H5 sing N N 280 NAG C6 O6 sing N N 281 NAG C6 H61 sing N N 282 NAG C6 H62 sing N N 283 NAG C7 C8 sing N N 284 NAG C7 N2 sing N N 285 NAG C7 O7 doub N N 286 NAG C8 H81 sing N N 287 NAG C8 H82 sing N N 288 NAG C8 H83 sing N N 289 NAG N2 HN2 sing N N 290 NAG O1 HO1 sing N N 291 NAG O3 HO3 sing N N 292 NAG O4 HO4 sing N N 293 NAG O6 HO6 sing N N 294 PHE N CA sing N N 295 PHE N H sing N N 296 PHE N H2 sing N N 297 PHE CA C sing N N 298 PHE CA CB sing N N 299 PHE CA HA sing N N 300 PHE C O doub N N 301 PHE C OXT sing N N 302 PHE CB CG sing N N 303 PHE CB HB2 sing N N 304 PHE CB HB3 sing N N 305 PHE CG CD1 doub Y N 306 PHE CG CD2 sing Y N 307 PHE CD1 CE1 sing Y N 308 PHE CD1 HD1 sing N N 309 PHE CD2 CE2 doub Y N 310 PHE CD2 HD2 sing N N 311 PHE CE1 CZ doub Y N 312 PHE CE1 HE1 sing N N 313 PHE CE2 CZ sing Y N 314 PHE CE2 HE2 sing N N 315 PHE CZ HZ sing N N 316 PHE OXT HXT sing N N 317 PRO N CA sing N N 318 PRO N CD sing N N 319 PRO N H sing N N 320 PRO CA C sing N N 321 PRO CA CB sing N N 322 PRO CA HA sing N N 323 PRO C O doub N N 324 PRO C OXT sing N N 325 PRO CB CG sing N N 326 PRO CB HB2 sing N N 327 PRO CB HB3 sing N N 328 PRO CG CD sing N N 329 PRO CG HG2 sing N N 330 PRO CG HG3 sing N N 331 PRO CD HD2 sing N N 332 PRO CD HD3 sing N N 333 PRO OXT HXT sing N N 334 RET C1 C2 sing N N 335 RET C1 C6 sing N N 336 RET C1 C16 sing N N 337 RET C1 C17 sing N N 338 RET C2 C3 sing N N 339 RET C2 H21 sing N N 340 RET C2 H22 sing N N 341 RET C3 C4 sing N N 342 RET C3 H31 sing N N 343 RET C3 H32 sing N N 344 RET C4 C5 sing N N 345 RET C4 H41 sing N N 346 RET C4 H42 sing N N 347 RET C5 C6 doub N N 348 RET C5 C18 sing N N 349 RET C6 C7 sing N N 350 RET C7 C8 doub N E 351 RET C7 H7 sing N N 352 RET C8 C9 sing N N 353 RET C8 H8 sing N N 354 RET C9 C10 doub N E 355 RET C9 C19 sing N N 356 RET C10 C11 sing N N 357 RET C10 H10 sing N N 358 RET C11 C12 doub N E 359 RET C11 H11 sing N N 360 RET C12 C13 sing N N 361 RET C12 H12 sing N N 362 RET C13 C14 doub N E 363 RET C13 C20 sing N N 364 RET C14 C15 sing N N 365 RET C14 H14 sing N N 366 RET C15 O1 doub N N 367 RET C15 H15 sing N N 368 RET C16 H161 sing N N 369 RET C16 H162 sing N N 370 RET C16 H163 sing N N 371 RET C17 H171 sing N N 372 RET C17 H172 sing N N 373 RET C17 H173 sing N N 374 RET C18 H181 sing N N 375 RET C18 H182 sing N N 376 RET C18 H183 sing N N 377 RET C19 H191 sing N N 378 RET C19 H192 sing N N 379 RET C19 H193 sing N N 380 RET C20 H201 sing N N 381 RET C20 H202 sing N N 382 RET C20 H203 sing N N 383 SER N CA sing N N 384 SER N H sing N N 385 SER N H2 sing N N 386 SER CA C sing N N 387 SER CA CB sing N N 388 SER CA HA sing N N 389 SER C O doub N N 390 SER C OXT sing N N 391 SER CB OG sing N N 392 SER CB HB2 sing N N 393 SER CB HB3 sing N N 394 SER OG HG sing N N 395 SER OXT HXT sing N N 396 THR N CA sing N N 397 THR N H sing N N 398 THR N H2 sing N N 399 THR CA C sing N N 400 THR CA CB sing N N 401 THR CA HA sing N N 402 THR C O doub N N 403 THR C OXT sing N N 404 THR CB OG1 sing N N 405 THR CB CG2 sing N N 406 THR CB HB sing N N 407 THR OG1 HG1 sing N N 408 THR CG2 HG21 sing N N 409 THR CG2 HG22 sing N N 410 THR CG2 HG23 sing N N 411 THR OXT HXT sing N N 412 TRP N CA sing N N 413 TRP N H sing N N 414 TRP N H2 sing N N 415 TRP CA C sing N N 416 TRP CA CB sing N N 417 TRP CA HA sing N N 418 TRP C O doub N N 419 TRP C OXT sing N N 420 TRP CB CG sing N N 421 TRP CB HB2 sing N N 422 TRP CB HB3 sing N N 423 TRP CG CD1 doub Y N 424 TRP CG CD2 sing Y N 425 TRP CD1 NE1 sing Y N 426 TRP CD1 HD1 sing N N 427 TRP CD2 CE2 doub Y N 428 TRP CD2 CE3 sing Y N 429 TRP NE1 CE2 sing Y N 430 TRP NE1 HE1 sing N N 431 TRP CE2 CZ2 sing Y N 432 TRP CE3 CZ3 doub Y N 433 TRP CE3 HE3 sing N N 434 TRP CZ2 CH2 doub Y N 435 TRP CZ2 HZ2 sing N N 436 TRP CZ3 CH2 sing Y N 437 TRP CZ3 HZ3 sing N N 438 TRP CH2 HH2 sing N N 439 TRP OXT HXT sing N N 440 TYR N CA sing N N 441 TYR N H sing N N 442 TYR N H2 sing N N 443 TYR CA C sing N N 444 TYR CA CB sing N N 445 TYR CA HA sing N N 446 TYR C O doub N N 447 TYR C OXT sing N N 448 TYR CB CG sing N N 449 TYR CB HB2 sing N N 450 TYR CB HB3 sing N N 451 TYR CG CD1 doub Y N 452 TYR CG CD2 sing Y N 453 TYR CD1 CE1 sing Y N 454 TYR CD1 HD1 sing N N 455 TYR CD2 CE2 doub Y N 456 TYR CD2 HD2 sing N N 457 TYR CE1 CZ doub Y N 458 TYR CE1 HE1 sing N N 459 TYR CE2 CZ sing Y N 460 TYR CE2 HE2 sing N N 461 TYR CZ OH sing N N 462 TYR OH HH sing N N 463 TYR OXT HXT sing N N 464 VAL N CA sing N N 465 VAL N H sing N N 466 VAL N H2 sing N N 467 VAL CA C sing N N 468 VAL CA CB sing N N 469 VAL CA HA sing N N 470 VAL C O doub N N 471 VAL C OXT sing N N 472 VAL CB CG1 sing N N 473 VAL CB CG2 sing N N 474 VAL CB HB sing N N 475 VAL CG1 HG11 sing N N 476 VAL CG1 HG12 sing N N 477 VAL CG1 HG13 sing N N 478 VAL CG2 HG21 sing N N 479 VAL CG2 HG22 sing N N 480 VAL CG2 HG23 sing N N 481 VAL OXT HXT sing N N 482 # _em_admin.current_status REL _em_admin.deposition_date 2025-03-29 _em_admin.deposition_site RCSB _em_admin.entry_id 9NYX _em_admin.last_update 2026-02-04 _em_admin.map_release_date 2026-02-04 _em_admin.title 'Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State' # _em_ctf_correction.details C1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.5 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9913 _em_entity_assembly_naturalsource.organism 'Bos taurus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 45 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.21rc1_5015 ? 'IMAGE ACQUISITION' ? 3 1 ? 1 ? ? ? MASKING ? 4 1 1 1 ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? ? OTHER ? 9 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'RM1 GM142002' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 4 NAG 1 n 4 NAG 2 n # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9NYX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #