HEADER HYDROLASE, LYASE 01-APR-25 9O00 TITLE CRYSTAL STRUCTURE OF AFOGG1 IN A DNA-FREE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 8-OXOGUANINE DNA GLYCOSYLASE/AP LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.-,4.2.99.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: OGG, AF_0371; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-GLYCOSYLASE, AP-LYASE, HYDROLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.L.HUFFMAN,H.Y.H.TANG,A.SYED,A.S.ARVAI,C.D.MOL,J.A.TAINER REVDAT 1 15-APR-26 9O00 0 JRNL AUTH J.L.HUFFMAN,H.Y.H.TANG,A.SYED,A.S.ARVAI,C.D.MOL,J.A.TAINER JRNL TITL CRYSTAL STRUCTURE OF AFOGG1 IN A DNA-FREE STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 21565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5700 - 5.8000 0.91 1474 148 0.1837 0.2254 REMARK 3 2 5.7900 - 4.6000 0.93 1484 152 0.1829 0.2096 REMARK 3 3 4.5900 - 4.0200 0.94 1519 146 0.1573 0.1859 REMARK 3 4 4.0200 - 3.6500 0.95 1519 153 0.1675 0.2028 REMARK 3 5 3.6500 - 3.3900 0.96 1542 162 0.1934 0.1821 REMARK 3 6 3.3900 - 3.1900 0.97 1533 155 0.2106 0.2345 REMARK 3 7 3.1900 - 3.0300 0.96 1550 154 0.2289 0.2772 REMARK 3 8 3.0300 - 2.9000 0.97 1553 157 0.2364 0.2857 REMARK 3 9 2.9000 - 2.7900 0.97 1550 159 0.2524 0.2535 REMARK 3 10 2.7800 - 2.6900 0.97 1537 156 0.2269 0.2286 REMARK 3 11 2.6900 - 2.6000 0.98 1576 159 0.2292 0.2572 REMARK 3 12 2.6000 - 2.5300 0.97 1513 153 0.2439 0.2728 REMARK 3 13 2.5300 - 2.4600 0.98 1578 165 0.2349 0.2700 REMARK 3 14 2.4600 - 2.4000 0.98 1595 161 0.2369 0.2269 REMARK 3 15 2.4000 - 2.3500 0.98 1562 162 0.2488 0.3092 REMARK 3 16 2.3500 - 2.3000 0.98 1554 158 0.2556 0.2967 REMARK 3 17 2.3000 - 2.2500 0.98 1567 163 0.2608 0.2633 REMARK 3 18 2.2500 - 2.2100 0.95 1480 151 0.2656 0.2814 REMARK 3 19 2.2100 - 2.1700 0.89 1429 143 0.2814 0.3280 REMARK 3 20 2.1700 - 2.1300 0.78 1256 128 0.2906 0.2859 REMARK 3 21 2.1300 - 2.1000 0.77 1212 125 0.3098 0.3626 REMARK 3 22 2.1000 - 2.0700 0.70 1104 114 0.3379 0.3465 REMARK 3 23 2.0700 - 2.0400 0.66 1079 110 0.3506 0.3966 REMARK 3 24 2.0400 - 2.0100 0.63 993 100 0.3587 0.3434 REMARK 3 25 2.0100 - 1.9800 0.60 951 95 0.3699 0.3457 REMARK 3 26 1.9800 - 1.9600 0.55 886 92 0.4416 0.5708 REMARK 3 27 1.9600 - 1.9300 0.46 730 73 0.4832 0.4407 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 1.235 NULL REMARK 3 CHIRALITY : 0.049 244 REMARK 3 PLANARITY : 0.012 282 REMARK 3 DIHEDRAL : 6.110 226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9O00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-25. REMARK 100 THE DEPOSITION ID IS D_1000292506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21581 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 42.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMIDAZOLE/MALATE, PH 5.0, 75% REMARK 280 AMMONIUM SULFATE (SATURATED), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.24950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.84900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.24950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.84900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.24950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.84900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.24950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.84900 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 43.25400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.84900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 43.25400 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 70.84900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 43.25400 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 70.84900 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 43.25400 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 70.84900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 43.25400 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.24950 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 43.25400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 53.24950 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 43.25400 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 53.24950 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 43.25400 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 53.24950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 226 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 257 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 105 H ALA A 109 1.54 REMARK 500 H ILE A 138 O HOH A 207 1.59 REMARK 500 OE1 GLU A 23 O HOH A 201 1.86 REMARK 500 ND1 HIS A 81 O HOH A 202 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 99 OE2 GLU A 99 2665 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 99 CG GLU A 99 CD -0.126 REMARK 500 GLU A 175 CD GLU A 175 OE2 -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 175 CA - CB - CG ANGL. DEV. = -13.5 DEGREES REMARK 500 GLU A 175 OE1 - CD - OE2 ANGL. DEV. = -18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 58.29 -91.83 REMARK 500 SER A 51 145.33 -177.35 REMARK 500 SER A 94 39.70 -86.98 REMARK 500 LEU A 197 -119.95 -102.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 175 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9O00 A 2 198 UNP O29876 OGG1_ARCFU 2 198 SEQADV 9O00 ILE A -4 UNP O29876 EXPRESSION TAG SEQADV 9O00 SER A -3 UNP O29876 EXPRESSION TAG SEQADV 9O00 GLU A -2 UNP O29876 EXPRESSION TAG SEQADV 9O00 PHE A -1 UNP O29876 EXPRESSION TAG SEQADV 9O00 GLY A 0 UNP O29876 EXPRESSION TAG SEQADV 9O00 SER A 1 UNP O29876 EXPRESSION TAG SEQRES 1 A 203 ILE SER GLU PHE GLY SER ILE GLU LYS ALA ILE SER ARG SEQRES 2 A 203 ARG ILE LYS GLU PHE ARG GLN LEU GLY GLU LYS GLY GLU SEQRES 3 A 203 VAL GLU PHE ASP PHE ARG PRO PHE LEU ASP PHE SER VAL SEQRES 4 A 203 LYS ALA THR ILE ARG THR GLU LEU ALA PHE CYS ILE SER SEQRES 5 A 203 THR ALA ASN SER SER ALA THR ALA GLY LEU LYS PHE GLN SEQRES 6 A 203 ARG LEU LEU GLY GLN GLY VAL GLY VAL LYS GLU ALA LEU SEQRES 7 A 203 THR LEU ALA GLY VAL ARG PHE HIS ASN ARG LYS ALA GLU SEQRES 8 A 203 TYR ILE ARG GLU ALA PHE LYS SER PHE LYS LEU VAL GLU SEQRES 9 A 203 LYS ALA LEU GLU ALA GLU SER SER LYS ALA ARG GLU ILE SEQRES 10 A 203 LEU LEU LYS ILE LYS GLY LEU GLY MSE LYS GLU ALA SER SEQRES 11 A 203 HIS PHE LEU ARG ASN VAL GLY ARG GLU ASP VAL ALA ILE SEQRES 12 A 203 ILE ASP ARG HIS ILE LEU ARG TRP LEU GLU ARG GLN GLY SEQRES 13 A 203 TYR GLU VAL PRO GLY THR MSE THR ALA LYS LYS TYR LEU SEQRES 14 A 203 GLU VAL GLU LYS ILE LEU MSE GLU ILE SER GLU GLU ARG SEQRES 15 A 203 GLY GLU SER LEU ALA GLU MSE ASP LEU ARG ILE TRP ALA SEQRES 16 A 203 GLU MSE THR GLY LYS VAL LEU LYS MODRES 9O00 MSE A 121 MET MODIFIED RESIDUE MODRES 9O00 MSE A 158 MET MODIFIED RESIDUE MODRES 9O00 MSE A 171 MET MODIFIED RESIDUE MODRES 9O00 MSE A 184 MET MODIFIED RESIDUE MODRES 9O00 MSE A 192 MET MODIFIED RESIDUE HET MSE A 121 17 HET MSE A 158 17 HET MSE A 171 17 HET MSE A 184 17 HET MSE A 192 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *63(H2 O) HELIX 1 AA1 SER A -3 GLY A 20 1 24 HELIX 2 AA2 ILE A 38 THR A 48 1 11 HELIX 3 AA3 SER A 52 GLY A 64 1 13 HELIX 4 AA4 GLY A 68 ALA A 76 1 9 HELIX 5 AA5 PHE A 80 SER A 94 1 15 HELIX 6 AA6 SER A 94 GLU A 103 1 10 HELIX 7 AA7 GLU A 105 LEU A 114 1 10 HELIX 8 AA8 GLY A 120 VAL A 131 1 12 HELIX 9 AA9 ASP A 140 GLN A 150 1 11 HELIX 10 AB1 THR A 159 GLY A 178 1 20 HELIX 11 AB2 SER A 180 GLY A 194 1 15 SHEET 1 AA1 2 GLU A 21 ASP A 25 0 SHEET 2 AA1 2 SER A 33 THR A 37 -1 O VAL A 34 N PHE A 24 LINK C GLY A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N LYS A 122 1555 1555 1.34 LINK C THR A 157 N MSE A 158 1555 1555 1.32 LINK C MSE A 158 N THR A 159 1555 1555 1.33 LINK C LEU A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N GLU A 172 1555 1555 1.34 LINK C GLU A 183 N MSE A 184 1555 1555 1.32 LINK C MSE A 184 N ASP A 185 1555 1555 1.33 LINK C GLU A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N THR A 193 1555 1555 1.34 CISPEP 1 ARG A 27 PRO A 28 0 0.14 CRYST1 86.508 106.499 141.698 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007057 0.00000 CONECT 2023 2028 CONECT 2028 2023 2029 2036 CONECT 2029 2028 2030 2032 2037 CONECT 2030 2029 2031 2045 CONECT 2031 2030 CONECT 2032 2029 2033 2038 2039 CONECT 2033 2032 2034 2040 2041 CONECT 2034 2033 2035 CONECT 2035 2034 2042 2043 2044 CONECT 2036 2028 CONECT 2037 2029 CONECT 2038 2032 CONECT 2039 2032 CONECT 2040 2033 CONECT 2041 2033 CONECT 2042 2035 CONECT 2043 2035 CONECT 2044 2035 CONECT 2045 2030 CONECT 2623 2635 CONECT 2635 2623 2636 2643 CONECT 2636 2635 2637 2639 2644 CONECT 2637 2636 2638 2652 CONECT 2638 2637 CONECT 2639 2636 2640 2645 2646 CONECT 2640 2639 2641 2647 2648 CONECT 2641 2640 2642 CONECT 2642 2641 2649 2650 2651 CONECT 2643 2635 CONECT 2644 2636 CONECT 2645 2639 CONECT 2646 2639 CONECT 2647 2640 CONECT 2648 2640 CONECT 2649 2642 CONECT 2650 2642 CONECT 2651 2642 CONECT 2652 2637 CONECT 2849 2866 CONECT 2866 2849 2867 2874 CONECT 2867 2866 2868 2870 2875 CONECT 2868 2867 2869 2883 CONECT 2869 2868 CONECT 2870 2867 2871 2876 2877 CONECT 2871 2870 2872 2878 2879 CONECT 2872 2871 2873 CONECT 2873 2872 2880 2881 2882 CONECT 2874 2866 CONECT 2875 2867 CONECT 2876 2870 CONECT 2877 2870 CONECT 2878 2871 CONECT 2879 2871 CONECT 2880 2873 CONECT 2881 2873 CONECT 2882 2873 CONECT 2883 2868 CONECT 3046 3059 CONECT 3059 3046 3060 3067 CONECT 3060 3059 3061 3063 3068 CONECT 3061 3060 3062 3076 CONECT 3062 3061 CONECT 3063 3060 3064 3069 3070 CONECT 3064 3063 3065 3071 3072 CONECT 3065 3064 3066 CONECT 3066 3065 3073 3074 3075 CONECT 3067 3059 CONECT 3068 3060 CONECT 3069 3063 CONECT 3070 3063 CONECT 3071 3064 CONECT 3072 3064 CONECT 3073 3066 CONECT 3074 3066 CONECT 3075 3066 CONECT 3076 3061 CONECT 3186 3199 CONECT 3199 3186 3200 3207 CONECT 3200 3199 3201 3203 3208 CONECT 3201 3200 3202 3216 CONECT 3202 3201 CONECT 3203 3200 3204 3209 3210 CONECT 3204 3203 3205 3211 3212 CONECT 3205 3204 3206 CONECT 3206 3205 3213 3214 3215 CONECT 3207 3199 CONECT 3208 3200 CONECT 3209 3203 CONECT 3210 3203 CONECT 3211 3204 CONECT 3212 3204 CONECT 3213 3206 CONECT 3214 3206 CONECT 3215 3206 CONECT 3216 3201 MASTER 393 0 5 11 2 0 0 6 1683 1 95 16 END