HEADER HYDROLASE 03-APR-25 9O2M TITLE HEPARANASE P6 IN COMPLEX WITH FRAGMENT C5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARANASE 50 KDA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEPARANASE 8 KDA SUBUNIT; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPSE, HEP, HPA, HPA1, HPR1, HPSE1, HSE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HPSE, HEP, HPA, HPA1, HPR1, HPSE1, HSE1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEPARANASE, SMALL MOLECULE, CANCER, COMPLEX, THERAPEUTICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.DAVIES,R.L.FRKIC,C.J.JACKSON REVDAT 1 11-FEB-26 9O2M 0 JRNL AUTH L.J.DAVIES,C.WHITEFIELD,H.KIM,C.NITSCHE,C.J.JACKSON, JRNL AUTH 2 R.L.FRKIC JRNL TITL FRAGMENT SCREENING AND STRUCTURE-GUIDED DEVELOPMENT OF JRNL TITL 2 HEPARANASE INHIBITORS REVEAL ORTHOSTERIC AND ALLOSTERIC JRNL TITL 3 INHIBITION JRNL REF ACS MED.CHEM.LETT. 2026 JRNL REFN ISSN 1948-5875 JRNL DOI 10.1021/ACSMEDCHEMLETT.5C00587 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 38577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2000 - 4.8300 1.00 2793 168 0.1738 0.1942 REMARK 3 2 4.8300 - 3.8300 1.00 2716 117 0.1354 0.1564 REMARK 3 3 3.8300 - 3.3500 1.00 2667 134 0.1480 0.2037 REMARK 3 4 3.3500 - 3.0400 1.00 2637 138 0.1727 0.1941 REMARK 3 5 3.0400 - 2.8200 1.00 2613 148 0.1672 0.1866 REMARK 3 6 2.8200 - 2.6600 1.00 2622 144 0.1683 0.1970 REMARK 3 7 2.6600 - 2.5200 1.00 2595 151 0.1665 0.2123 REMARK 3 8 2.5200 - 2.4100 1.00 2598 158 0.1727 0.2538 REMARK 3 9 2.4100 - 2.3200 1.00 2598 140 0.1725 0.1866 REMARK 3 10 2.3200 - 2.2400 1.00 2583 131 0.1651 0.2200 REMARK 3 11 2.2400 - 2.1700 1.00 2616 134 0.1600 0.2314 REMARK 3 12 2.1700 - 2.1100 1.00 2578 149 0.1698 0.2003 REMARK 3 13 2.1100 - 2.0500 1.00 2545 142 0.1798 0.2495 REMARK 3 14 2.0500 - 2.0000 0.93 2424 138 0.2024 0.2717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : 0.795 NULL REMARK 3 CHIRALITY : 0.049 561 REMARK 3 PLANARITY : 0.006 666 REMARK 3 DIHEDRAL : 13.977 1404 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3954 9.4135 0.9890 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.1240 REMARK 3 T33: 0.1771 T12: 0.0221 REMARK 3 T13: 0.0154 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 4.0544 L22: 1.5762 REMARK 3 L33: 2.8756 L12: 0.5885 REMARK 3 L13: 0.5449 L23: -0.1405 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: 0.3190 S13: 0.0458 REMARK 3 S21: -0.1259 S22: 0.0243 S23: 0.0639 REMARK 3 S31: -0.0056 S32: 0.0878 S33: -0.0346 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3959 4.0273 3.6178 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.1687 REMARK 3 T33: 0.2483 T12: -0.0065 REMARK 3 T13: -0.0442 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.8039 L22: 1.4534 REMARK 3 L33: 3.0003 L12: 0.3773 REMARK 3 L13: -0.7104 L23: -0.5126 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: 0.0311 S13: -0.2467 REMARK 3 S21: -0.1357 S22: 0.0478 S23: 0.0856 REMARK 3 S31: 0.2155 S32: -0.0715 S33: -0.0428 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1370 1.6300 12.0603 REMARK 3 T TENSOR REMARK 3 T11: 0.2528 T22: 0.2060 REMARK 3 T33: 0.2518 T12: -0.0073 REMARK 3 T13: -0.0007 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 4.7771 L22: 4.2508 REMARK 3 L33: 4.9716 L12: -0.0269 REMARK 3 L13: 0.0588 L23: 0.3442 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.1304 S13: -0.3396 REMARK 3 S21: 0.1883 S22: 0.0094 S23: 0.0919 REMARK 3 S31: 0.6388 S32: 0.0035 S33: 0.0882 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2048 10.6389 23.8109 REMARK 3 T TENSOR REMARK 3 T11: 0.2204 T22: 0.2053 REMARK 3 T33: 0.2131 T12: 0.0304 REMARK 3 T13: 0.0207 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.1754 L22: 1.0405 REMARK 3 L33: 1.5292 L12: 0.4678 REMARK 3 L13: 0.1165 L23: -0.3068 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.2860 S13: 0.0151 REMARK 3 S21: 0.0787 S22: -0.0515 S23: 0.1128 REMARK 3 S31: -0.0320 S32: -0.0236 S33: 0.0141 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 424 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7748 3.9153 35.8158 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.4707 REMARK 3 T33: 0.2719 T12: -0.0426 REMARK 3 T13: -0.0436 T23: 0.1627 REMARK 3 L TENSOR REMARK 3 L11: 1.8991 L22: 4.6482 REMARK 3 L33: 3.7294 L12: 0.5452 REMARK 3 L13: 1.4221 L23: -0.8274 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: -0.5971 S13: -0.4712 REMARK 3 S21: 0.2959 S22: -0.0855 S23: -0.1182 REMARK 3 S31: 0.1206 S32: 0.3240 S33: 0.2229 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 450 THROUGH 543 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5315 12.0243 35.6053 REMARK 3 T TENSOR REMARK 3 T11: 0.3219 T22: 0.5013 REMARK 3 T33: 0.2642 T12: -0.0811 REMARK 3 T13: -0.0740 T23: 0.0993 REMARK 3 L TENSOR REMARK 3 L11: 2.1406 L22: 1.0454 REMARK 3 L33: 2.8236 L12: -0.1713 REMARK 3 L13: -0.0335 L23: -0.5379 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.5658 S13: -0.1164 REMARK 3 S21: 0.2544 S22: -0.2274 S23: -0.1756 REMARK 3 S31: -0.0778 S32: 0.6040 S33: 0.1918 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4093 4.3238 47.1679 REMARK 3 T TENSOR REMARK 3 T11: 0.6716 T22: 0.8057 REMARK 3 T33: 0.3631 T12: -0.0683 REMARK 3 T13: -0.0452 T23: 0.1598 REMARK 3 L TENSOR REMARK 3 L11: 3.6093 L22: 2.6701 REMARK 3 L33: 6.5283 L12: 0.9177 REMARK 3 L13: 0.4529 L23: 4.0857 REMARK 3 S TENSOR REMARK 3 S11: 0.2168 S12: -0.7506 S13: -0.0429 REMARK 3 S21: 1.1551 S22: -0.3008 S23: -0.0433 REMARK 3 S31: -0.1964 S32: -0.2519 S33: 0.0706 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7077 -8.0804 34.5220 REMARK 3 T TENSOR REMARK 3 T11: 0.3718 T22: 0.4813 REMARK 3 T33: 0.5077 T12: 0.0063 REMARK 3 T13: 0.0282 T23: 0.2262 REMARK 3 L TENSOR REMARK 3 L11: 7.6062 L22: 5.6739 REMARK 3 L33: 7.2362 L12: -1.8756 REMARK 3 L13: 4.2934 L23: -2.1979 REMARK 3 S TENSOR REMARK 3 S11: 0.0711 S12: -1.0165 S13: -0.7066 REMARK 3 S21: 0.8072 S22: 0.1167 S23: -0.1853 REMARK 3 S31: 0.3382 S32: -0.1808 S33: -0.1298 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7444 12.5581 10.5883 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.2241 REMARK 3 T33: 0.2315 T12: 0.0223 REMARK 3 T13: 0.0102 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.2563 L22: 1.3598 REMARK 3 L33: 2.3351 L12: 0.7668 REMARK 3 L13: -0.1079 L23: -0.9891 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.1327 S13: 0.0442 REMARK 3 S21: -0.0552 S22: 0.0279 S23: -0.0617 REMARK 3 S31: -0.0513 S32: 0.2072 S33: 0.0416 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2232 14.7016 -2.9986 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.2793 REMARK 3 T33: 0.2536 T12: -0.0121 REMARK 3 T13: -0.0311 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 5.6771 L22: 3.4683 REMARK 3 L33: 2.8850 L12: -1.3806 REMARK 3 L13: -3.9951 L23: 0.8150 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: 0.4577 S13: 0.2837 REMARK 3 S21: -0.0775 S22: 0.1414 S23: -0.1766 REMARK 3 S31: -0.0216 S32: -0.0212 S33: -0.3216 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9O2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-25. REMARK 100 THE DEPOSITION ID IS D_1000294294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48101 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 2.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M REMARK 280 AMMONIUMA ACETATE, 25% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.78050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.43400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.92450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.43400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.78050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.92450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 259 -80.49 -74.13 REMARK 500 ASN A 260 59.83 -118.41 REMARK 500 THR A 275 -172.94 60.11 REMARK 500 GLU A 343 117.73 -170.53 REMARK 500 SER A 345 -166.61 -166.55 REMARK 500 LEU A 355 -56.32 -142.01 REMARK 500 LEU A 419 -162.76 -111.19 REMARK 500 ASP A 427 82.49 -160.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 932 DISTANCE = 6.80 ANGSTROMS DBREF 9O2M A 160 543 UNP Q9Y251 HPSE_HUMAN 160 543 DBREF 9O2M B 36 109 UNP Q9Y251 HPSE_HUMAN 36 109 SEQADV 9O2M LYS A 178 UNP Q9Y251 ASN 178 CONFLICT SEQADV 9O2M SER A 195 UNP Q9Y251 ALA 195 CONFLICT SEQADV 9O2M GLY A 197 UNP Q9Y251 LEU 197 CONFLICT SEQADV 9O2M ALA A 212 UNP Q9Y251 SER 212 CONFLICT SEQADV 9O2M ASP A 219 UNP Q9Y251 SER 219 CONFLICT SEQADV 9O2M ARG A 230 UNP Q9Y251 LEU 230 CONFLICT SEQADV 9O2M GLY A 234 UNP Q9Y251 ASP 234 CONFLICT SEQADV 9O2M LYS A 244 UNP Q9Y251 GLU 244 CONFLICT SEQADV 9O2M HIS A 248 UNP Q9Y251 GLN 248 CONFLICT SEQADV 9O2M GLY A 273 UNP Q9Y251 ARG 273 CONFLICT SEQADV 9O2M ALA A 292 UNP Q9Y251 SER 292 CONFLICT SEQADV 9O2M LEU A 307 UNP Q9Y251 LYS 307 CONFLICT SEQADV 9O2M THR A 318 UNP Q9Y251 ILE 318 CONFLICT SEQADV 9O2M GLN A 322 UNP Q9Y251 SER 322 CONFLICT SEQADV 9O2M LEU A 327 UNP Q9Y251 PHE 327 CONFLICT SEQADV 9O2M GLY A 354 UNP Q9Y251 LEU 354 CONFLICT SEQADV 9O2M GLN A 426 UNP Q9Y251 SER 426 CONFLICT SEQADV 9O2M ASP A 427 UNP Q9Y251 LYS 427 CONFLICT SEQADV 9O2M GLN A 477 UNP Q9Y251 LYS 477 CONFLICT SEQADV 9O2M HIS A 483 UNP Q9Y251 LEU 483 CONFLICT SEQADV 9O2M ASP A 486 UNP Q9Y251 HIS 486 CONFLICT SEQADV 9O2M GLN A 498 UNP Q9Y251 LEU 498 CONFLICT SEQADV 9O2M LYS A 512 UNP Q9Y251 MET 512 CONFLICT SEQADV 9O2M PRO A 513 UNP Q9Y251 GLU 513 CONFLICT SEQADV 9O2M ALA A 530 UNP Q9Y251 SER 530 CONFLICT SEQADV 9O2M PRO A 540 UNP Q9Y251 ALA 540 CONFLICT SEQRES 1 A 384 PHE LYS ASN SER THR TYR SER ARG SER SER VAL ASP VAL SEQRES 2 A 384 LEU TYR THR PHE ALA LYS CYS SER GLY LEU ASP LEU ILE SEQRES 3 A 384 PHE GLY LEU ASN ALA LEU LEU ARG THR SER ASP GLY GLN SEQRES 4 A 384 TRP ASN SER SER ASN ALA GLN LEU LEU LEU ASP TYR CYS SEQRES 5 A 384 ALA SER LYS GLY TYR ASN ILE ASP TRP GLU LEU GLY ASN SEQRES 6 A 384 GLU PRO ASN SER PHE ARG LYS LYS ALA GLY ILE PHE ILE SEQRES 7 A 384 ASN GLY SER GLN LEU GLY LYS ASP PHE ILE HIS LEU HIS SEQRES 8 A 384 LYS LEU LEU ARG LYS SER THR PHE LYS ASN ALA LYS LEU SEQRES 9 A 384 TYR GLY PRO ASP VAL GLY GLN PRO ARG GLY LYS THR ALA SEQRES 10 A 384 LYS MET LEU LYS SER PHE LEU LYS ALA GLY GLY GLU VAL SEQRES 11 A 384 ILE ASP ALA VAL THR TRP HIS HIS TYR TYR LEU ASN GLY SEQRES 12 A 384 ARG THR ALA THR LEU GLU ASP PHE LEU ASN PRO ASP VAL SEQRES 13 A 384 LEU ASP THR PHE ILE SER GLN VAL GLN LYS VAL LEU GLN SEQRES 14 A 384 VAL VAL GLU SER THR ARG PRO GLY LYS LYS VAL TRP LEU SEQRES 15 A 384 GLY GLU THR SER SER ALA TYR GLY GLY GLY ALA PRO GLY SEQRES 16 A 384 LEU SER ASP THR PHE ALA ALA GLY PHE MET TRP LEU ASP SEQRES 17 A 384 LYS LEU GLY LEU SER ALA ARG MET GLY ILE GLU VAL VAL SEQRES 18 A 384 MET ARG GLN VAL PHE PHE GLY ALA GLY ASN TYR HIS LEU SEQRES 19 A 384 VAL ASP GLU ASN PHE ASP PRO LEU PRO ASP TYR TRP LEU SEQRES 20 A 384 SER LEU LEU PHE LYS LYS LEU VAL GLY THR LYS VAL LEU SEQRES 21 A 384 MET ALA SER VAL GLN GLY GLN ASP ARG ARG LYS LEU ARG SEQRES 22 A 384 VAL TYR LEU HIS CYS THR ASN THR ASP ASN PRO ARG TYR SEQRES 23 A 384 LYS GLU GLY ASP LEU THR LEU TYR ALA ILE ASN LEU HIS SEQRES 24 A 384 ASN VAL THR LYS TYR LEU ARG LEU PRO TYR PRO PHE SER SEQRES 25 A 384 ASN LYS GLN VAL ASP GLN TYR LEU LEU ARG PRO HIS GLY SEQRES 26 A 384 PRO ASP GLY LEU LEU SER LYS SER VAL GLN LEU ASN GLY SEQRES 27 A 384 GLN THR LEU LYS MET VAL ASP ASP GLN THR LEU PRO PRO SEQRES 28 A 384 LEU LYS PRO LYS PRO LEU ARG PRO GLY SER SER LEU GLY SEQRES 29 A 384 LEU PRO ALA PHE SER TYR ALA PHE PHE VAL ILE ARG ASN SEQRES 30 A 384 ALA LYS VAL PRO ALA CYS ILE SEQRES 1 B 74 GLN ASP VAL VAL ASP LEU ASP PHE PHE THR GLN GLU PRO SEQRES 2 B 74 LEU HIS LEU VAL SER PRO SER PHE LEU SER VAL THR ILE SEQRES 3 B 74 ASP ALA ASN LEU ALA THR ASP PRO ARG PHE LEU ILE LEU SEQRES 4 B 74 LEU GLY SER PRO LYS LEU ARG THR LEU ALA ARG GLY LEU SEQRES 5 B 74 SER PRO ALA TYR LEU ARG PHE GLY GLY THR LYS THR ASP SEQRES 6 B 74 PHE LEU ILE PHE ASP PRO LYS LYS GLU HET 4F8 A 601 17 HETNAM 4F8 2-PHENYL-1H-IMIDAZOLE-4,5-DICARBOXYLIC ACID FORMUL 3 4F8 C11 H8 N2 O4 FORMUL 4 HOH *285(H2 O) HELIX 1 AA1 SER A 166 SER A 180 1 15 HELIX 2 AA2 SER A 201 LYS A 214 1 14 HELIX 3 AA3 GLU A 225 ASN A 227 5 3 HELIX 4 AA4 SER A 228 GLY A 234 1 7 HELIX 5 AA5 ASN A 238 SER A 256 1 19 HELIX 6 AA6 ALA A 276 GLY A 287 1 12 HELIX 7 AA7 GLU A 288 ILE A 290 5 3 HELIX 8 AA8 THR A 306 LEU A 311 1 6 HELIX 9 AA9 ASN A 312 SER A 332 1 21 HELIX 10 AB1 THR A 358 ALA A 360 5 3 HELIX 11 AB2 ALA A 361 GLY A 376 1 16 HELIX 12 AB3 LEU A 401 LEU A 413 1 13 HELIX 13 AB4 PRO A 469 LYS A 473 5 5 HELIX 14 AB5 ASP A 486 SER A 490 5 5 HELIX 15 AB6 VAL A 539 ILE A 543 5 5 HELIX 16 AB7 ASN B 64 ASP B 68 5 5 HELIX 17 AB8 ARG B 70 GLY B 76 1 7 HELIX 18 AB9 SER B 77 LEU B 87 1 11 HELIX 19 AC1 GLY B 96 ASP B 100 5 5 SHEET 1 AA1 2 SER A 163 TYR A 165 0 SHEET 2 AA1 2 LEU B 102 PHE B 104 1 O ILE B 103 N SER A 163 SHEET 1 AA2 9 LEU A 182 LEU A 188 0 SHEET 2 AA2 9 ASP A 219 LEU A 222 1 O ASP A 219 N PHE A 186 SHEET 3 AA2 9 LEU A 263 VAL A 268 1 O TYR A 264 N TRP A 220 SHEET 4 AA2 9 ALA A 292 ASN A 301 1 O HIS A 296 N VAL A 268 SHEET 5 AA2 9 VAL A 339 TYR A 348 1 O TRP A 340 N VAL A 293 SHEET 6 AA2 9 VAL A 379 ARG A 382 1 O VAL A 379 N LEU A 341 SHEET 7 AA2 9 LEU B 57 ASP B 62 1 O SER B 58 N VAL A 380 SHEET 8 AA2 9 ALA B 90 GLY B 95 1 O ARG B 93 N ILE B 61 SHEET 9 AA2 9 LEU A 182 LEU A 188 1 N ILE A 185 O PHE B 94 SHEET 1 AA3 4 GLN A 498 THR A 499 0 SHEET 2 AA3 4 VAL A 493 LEU A 495 -1 N LEU A 495 O GLN A 498 SHEET 3 AA3 4 VAL A 475 PRO A 482 -1 N ARG A 481 O GLN A 494 SHEET 4 AA3 4 LYS A 514 PRO A 515 -1 O LYS A 514 N GLN A 477 SHEET 1 AA4 8 GLN A 498 THR A 499 0 SHEET 2 AA4 8 VAL A 493 LEU A 495 -1 N LEU A 495 O GLN A 498 SHEET 3 AA4 8 VAL A 475 PRO A 482 -1 N ARG A 481 O GLN A 494 SHEET 4 AA4 8 SER A 528 ILE A 534 -1 O VAL A 533 N ASP A 476 SHEET 5 AA4 8 LEU A 450 ASN A 456 -1 N LEU A 450 O ILE A 534 SHEET 6 AA4 8 LEU A 431 THR A 438 -1 N HIS A 436 O THR A 451 SHEET 7 AA4 8 VAL A 414 VAL A 418 -1 N GLY A 415 O CYS A 437 SHEET 8 AA4 8 HIS B 50 LEU B 51 -1 O HIS B 50 N VAL A 418 SHEET 1 AA5 4 MET A 420 VAL A 423 0 SHEET 2 AA5 4 VAL B 38 PHE B 44 -1 O PHE B 44 N MET A 420 SHEET 3 AA5 4 LYS A 462 ARG A 465 1 N ARG A 465 O VAL B 39 SHEET 4 AA5 4 LEU A 522 LEU A 524 -1 O LEU A 522 N LEU A 464 SSBOND 1 CYS A 437 CYS A 542 1555 1555 2.05 CISPEP 1 GLY A 265 PRO A 266 0 2.06 CISPEP 2 GLN A 383 VAL A 384 0 -8.88 CISPEP 3 TYR A 468 PRO A 469 0 0.72 CISPEP 4 SER B 88 PRO B 89 0 -1.08 CRYST1 59.561 75.849 124.868 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008008 0.00000 CONECT 2233 3065 CONECT 3065 2233 CONECT 3685 3686 3697 CONECT 3686 3685 3687 3701 CONECT 3687 3686 3688 3700 CONECT 3688 3687 3689 3690 CONECT 3689 3688 CONECT 3690 3688 CONECT 3691 3692 3696 3697 CONECT 3692 3691 3693 CONECT 3693 3692 3694 CONECT 3694 3693 3695 CONECT 3695 3694 3696 CONECT 3696 3691 3695 CONECT 3697 3685 3691 3700 CONECT 3698 3701 CONECT 3699 3701 CONECT 3700 3687 3697 CONECT 3701 3686 3698 3699 MASTER 394 0 1 19 27 0 0 6 3922 2 19 36 END