data_9O7L # _entry.id 9O7L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9O7L pdb_00009o7l 10.2210/pdb9o7l/pdb WWPDB D_1000294881 ? ? EMDB EMD-70203 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-07-30 ? 2 'Structure model' 1 1 2025-09-03 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9O7L _pdbx_database_status.recvd_initial_deposition_date 2025-04-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM of pi-conjugated Peptide 2 (6 strands)' _pdbx_database_related.db_id EMD-70203 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email fw2@uab.edu _pdbx_contact_author.name_first Fengbin _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1008-663X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rich-New, S.T.' 1 ? 'Wang, R.' 2 ? 'Zia, A.' 3 ? 'Tovar, J.D.' 4 ? 'Wang, F.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Macro Lett' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2161-1653 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 1100 _citation.page_last 1106 _citation.title 'Cryo-EM Visualization of Intermolecular pi-Electron Interactions within pi-Conjugated Peptidic Supramolecular Polymers.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsmacrolett.5c00360 _citation.pdbx_database_id_PubMed 40686463 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rich-New, S.T.' 1 ? primary 'Wang, R.' 2 ? primary 'Zia, A.' 3 ? primary 'Wang, F.' 4 ? primary 'Tovar, J.D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'pi-conjugated peptide' 473.520 6 ? ? ? ? 2 non-polymer syn ;2,2'-[thiophene-2,5-diyldi(4,1-phenylene)]diacetic acid ; 352.404 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAVEV _entity_poly.pdbx_seq_one_letter_code_can GAVEV _entity_poly.pdbx_strand_id D,A,B,F,H,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;2,2'-[thiophene-2,5-diyldi(4,1-phenylene)]diacetic acid ; _pdbx_entity_nonpoly.comp_id A1B9Z # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 VAL n 1 4 GLU n 1 5 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 5 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1B9Z non-polymer . ;2,2'-[thiophene-2,5-diyldi(4,1-phenylene)]diacetic acid ; ? 'C20 H16 O4 S' 352.404 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY D . n A 1 2 ALA 2 2 2 ALA ALA D . n A 1 3 VAL 3 3 3 VAL VAL D . n A 1 4 GLU 4 4 4 GLU GLU D . n A 1 5 VAL 5 5 ? ? ? D . n B 1 1 GLY 1 10 10 GLY GLY A . n B 1 2 ALA 2 11 11 ALA ALA A . n B 1 3 VAL 3 12 12 VAL VAL A . n B 1 4 GLU 4 13 13 GLU GLU A . n B 1 5 VAL 5 14 14 VAL VAL A . n C 1 1 GLY 1 1 1 GLY GLY B . n C 1 2 ALA 2 2 2 ALA ALA B . n C 1 3 VAL 3 3 3 VAL VAL B . n C 1 4 GLU 4 4 4 GLU GLU B . n C 1 5 VAL 5 5 5 VAL VAL B . n D 1 1 GLY 1 10 10 GLY GLY F . n D 1 2 ALA 2 11 11 ALA ALA F . n D 1 3 VAL 3 12 12 VAL VAL F . n D 1 4 GLU 4 13 ? ? ? F . n D 1 5 VAL 5 14 ? ? ? F . n E 1 1 GLY 1 1 1 GLY GLY H . n E 1 2 ALA 2 2 2 ALA ALA H . n E 1 3 VAL 3 3 ? ? ? H . n E 1 4 GLU 4 4 ? ? ? H . n E 1 5 VAL 5 5 ? ? ? H . n F 1 1 GLY 1 10 10 GLY GLY C . n F 1 2 ALA 2 11 11 ALA ALA C . n F 1 3 VAL 3 12 12 VAL VAL C . n F 1 4 GLU 4 13 13 GLU GLU C . n F 1 5 VAL 5 14 14 VAL VAL C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1B9Z _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1B9Z _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 A1B9Z 1 101 15 A1B9Z LR0 A . H 2 A1B9Z 1 101 15 A1B9Z LR0 F . I 2 A1B9Z 1 101 15 A1B9Z LR0 C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D GLU 4 ? CA ? A GLU 4 CA 2 1 Y 1 D GLU 4 ? C ? A GLU 4 C 3 1 Y 1 D GLU 4 ? O ? A GLU 4 O 4 1 Y 1 D GLU 4 ? CB ? A GLU 4 CB 5 1 Y 1 D GLU 4 ? CG ? A GLU 4 CG 6 1 Y 1 D GLU 4 ? CD ? A GLU 4 CD 7 1 Y 1 D GLU 4 ? OE1 ? A GLU 4 OE1 8 1 Y 1 D GLU 4 ? OE2 ? A GLU 4 OE2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9O7L _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9O7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9O7L _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9O7L _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.007 ? 4200 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 2.767 ? 5540 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 43.814 ? 1040 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.044 ? 500 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 660 ? f_plane_restr ? ? ? # _struct.entry_id 9O7L _struct.title 'Cryo-EM of pi-conjugated Peptide 2 (6 strands)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9O7L _struct_keywords.text 'peptide fiber, helical polymer, protein fibril' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9O7L _struct_ref.pdbx_db_accession 9O7L _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9O7L D 1 ? 5 ? 9O7L 1 ? 5 ? 1 5 2 1 9O7L A 1 ? 5 ? 9O7L 10 ? 14 ? 10 14 3 1 9O7L B 1 ? 5 ? 9O7L 1 ? 5 ? 1 5 4 1 9O7L F 1 ? 5 ? 9O7L 10 ? 14 ? 10 14 5 1 9O7L H 1 ? 5 ? 9O7L 1 ? 5 ? 1 5 6 1 9O7L C 1 ? 5 ? 9O7L 10 ? 14 ? 10 14 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 120-meric 120 2 'helical asymmetric unit' ? hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-20)' A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? -0.98228700 0.18738100 0.00000000 0.00000 -0.18738100 -0.98228700 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.24000 3 'helical symmetry operation' ? ? 0.98599600 -0.16676900 0.00000000 0.00000 0.16676900 0.98599600 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -18.88000 4 'helical symmetry operation' ? ? -0.98927200 0.14608300 0.00000000 0.00000 -0.14608300 -0.98927200 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -16.52000 5 'helical symmetry operation' ? ? 0.99211500 -0.12533300 0.00000000 0.00000 0.12533300 0.99211500 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -14.16000 6 'helical symmetry operation' ? ? -0.99452200 0.10452800 0.00000000 0.00000 -0.10452800 -0.99452200 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.80000 7 'helical symmetry operation' ? ? 0.99649300 -0.08367800 0.00000000 0.00000 0.08367800 0.99649300 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -9.44000 8 'helical symmetry operation' ? ? -0.99802700 0.06279100 0.00000000 0.00000 -0.06279100 -0.99802700 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.08000 9 'helical symmetry operation' ? ? 0.99912300 -0.04187600 0.00000000 0.00000 0.04187600 0.99912300 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -4.72000 10 'helical symmetry operation' ? ? -0.99978100 0.02094200 0.00000000 0.00000 -0.02094200 -0.99978100 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -2.36000 11 'helical symmetry operation' ? ? -0.99978100 -0.02094200 0.00000000 0.00000 0.02094200 -0.99978100 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 2.36000 12 'helical symmetry operation' ? ? 0.99912300 0.04187600 0.00000000 0.00000 -0.04187600 0.99912300 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 4.72000 13 'helical symmetry operation' ? ? -0.99802700 -0.06279100 0.00000000 0.00000 0.06279100 -0.99802700 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.08000 14 'helical symmetry operation' ? ? 0.99649300 0.08367800 0.00000000 0.00000 -0.08367800 0.99649300 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 9.44000 15 'helical symmetry operation' ? ? -0.99452200 -0.10452800 0.00000000 0.00000 0.10452800 -0.99452200 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.80000 16 'helical symmetry operation' ? ? 0.99211500 0.12533300 0.00000000 0.00000 -0.12533300 0.99211500 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 14.16000 17 'helical symmetry operation' ? ? -0.98927200 -0.14608300 0.00000000 0.00000 0.14608300 -0.98927200 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 16.52000 18 'helical symmetry operation' ? ? 0.98599600 0.16676900 0.00000000 0.00000 -0.16676900 0.98599600 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 18.88000 19 'helical symmetry operation' ? ? -0.98228700 -0.18738100 0.00000000 0.00000 0.18738100 -0.98228700 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.24000 20 'helical symmetry operation' ? ? 0.97814800 0.20791200 0.00000000 0.00000 -0.20791200 0.97814800 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 23.60000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 N ? ? ? 1_555 G A1B9Z . C50 ? ? D GLY 1 A A1B9Z 101 1_555 ? ? ? ? ? ? ? 1.460 ? ? covale2 covale both ? B GLY 1 N ? ? ? 1_555 G A1B9Z . C02 ? ? A GLY 10 A A1B9Z 101 1_555 ? ? ? ? ? ? ? 1.455 ? ? covale3 covale both ? C GLY 1 N ? ? ? 1_555 H A1B9Z . C50 ? ? B GLY 1 F A1B9Z 101 1_555 ? ? ? ? ? ? ? 1.456 ? ? covale4 covale both ? D GLY 1 N ? ? ? 1_555 H A1B9Z . C02 ? ? F GLY 10 F A1B9Z 101 1_555 ? ? ? ? ? ? ? 1.454 ? ? covale5 covale both ? E GLY 1 N ? ? ? 1_555 I A1B9Z . C50 ? ? H GLY 1 C A1B9Z 101 1_555 ? ? ? ? ? ? ? 1.456 ? ? covale6 covale both ? F GLY 1 N ? ? ? 1_555 I A1B9Z . C02 ? ? C GLY 10 C A1B9Z 101 1_555 ? ? ? ? ? ? ? 1.455 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 A1B9Z G . ? GLY B 1 ? A1B9Z A 101 ? 1_555 GLY A 10 ? 1_555 C02 N GLY 1 A1B9Z None Crosslinker 2 A1B9Z G . ? GLY A 1 ? A1B9Z A 101 ? 1_555 GLY D 1 ? 1_555 C50 N GLY 2 A1B9Z None Crosslinker 3 A1B9Z H . ? GLY D 1 ? A1B9Z F 101 ? 1_555 GLY F 10 ? 1_555 C02 N GLY 1 A1B9Z None Crosslinker 4 A1B9Z H . ? GLY C 1 ? A1B9Z F 101 ? 1_555 GLY B 1 ? 1_555 C50 N GLY 2 A1B9Z None Crosslinker 5 A1B9Z I . ? GLY F 1 ? A1B9Z C 101 ? 1_555 GLY C 10 ? 1_555 C02 N GLY 1 A1B9Z None Crosslinker 6 A1B9Z I . ? GLY E 1 ? A1B9Z C 101 ? 1_555 GLY H 1 ? 1_555 C50 N GLY 2 A1B9Z None Crosslinker # _pdbx_entry_details.entry_id 9O7L _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N H GLY 1 ? ? CA H GLY 1 ? ? C H GLY 1 ? ? 151.37 113.10 38.27 2.50 N 2 1 O H GLY 1 ? ? C H GLY 1 ? ? N H ALA 2 ? ? 135.16 122.70 12.46 1.60 Y 3 1 CB H ALA 2 ? ? CA H ALA 2 ? ? C H ALA 2 ? ? 119.55 110.10 9.45 1.50 N # _pdbx_helical_symmetry.entry_id 9O7L _pdbx_helical_symmetry.number_of_operations 20 _pdbx_helical_symmetry.rotation_per_n_subunits 178.8 _pdbx_helical_symmetry.rise_per_n_subunits 2.36 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9O7L _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9O7L _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 488485 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'VEVAG peptide fibril' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9O7L _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9O7L _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9O7L _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D VAL 5 ? A VAL 5 2 1 Y 1 F GLU 13 ? D GLU 4 3 1 Y 1 F VAL 14 ? D VAL 5 4 1 Y 1 H VAL 3 ? E VAL 3 5 1 Y 1 H GLU 4 ? E GLU 4 6 1 Y 1 H VAL 5 ? E VAL 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1B9Z C02 C N N 1 A1B9Z C36 C N N 2 A1B9Z C37 C Y N 3 A1B9Z C38 C Y N 4 A1B9Z C39 C Y N 5 A1B9Z C40 C Y N 6 A1B9Z C41 C Y N 7 A1B9Z C42 C Y N 8 A1B9Z C43 C Y N 9 A1B9Z C44 C Y N 10 A1B9Z C45 C Y N 11 A1B9Z C46 C Y N 12 A1B9Z C47 C Y N 13 A1B9Z C48 C Y N 14 A1B9Z C49 C N N 15 A1B9Z C50 C N N 16 A1B9Z C85 C Y N 17 A1B9Z C86 C Y N 18 A1B9Z C88 C Y N 19 A1B9Z C89 C Y N 20 A1B9Z O01 O N N 21 A1B9Z O84 O N N 22 A1B9Z S87 S Y N 23 A1B9Z H2 H N N 24 A1B9Z H3 H N N 25 A1B9Z H4 H N N 26 A1B9Z H5 H N N 27 A1B9Z H6 H N N 28 A1B9Z H7 H N N 29 A1B9Z H8 H N N 30 A1B9Z H9 H N N 31 A1B9Z H10 H N N 32 A1B9Z H11 H N N 33 A1B9Z H13 H N N 34 A1B9Z H14 H N N 35 A1B9Z H15 H N N 36 A1B9Z H16 H N N 37 A1B9Z O2 O N N 38 A1B9Z O1 O N N 39 A1B9Z H1 H N N 40 A1B9Z H12 H N N 41 ALA N N N N 42 ALA CA C N S 43 ALA C C N N 44 ALA O O N N 45 ALA CB C N N 46 ALA OXT O N N 47 ALA H H N N 48 ALA H2 H N N 49 ALA HA H N N 50 ALA HB1 H N N 51 ALA HB2 H N N 52 ALA HB3 H N N 53 ALA HXT H N N 54 GLU N N N N 55 GLU CA C N S 56 GLU C C N N 57 GLU O O N N 58 GLU CB C N N 59 GLU CG C N N 60 GLU CD C N N 61 GLU OE1 O N N 62 GLU OE2 O N N 63 GLU OXT O N N 64 GLU H H N N 65 GLU H2 H N N 66 GLU HA H N N 67 GLU HB2 H N N 68 GLU HB3 H N N 69 GLU HG2 H N N 70 GLU HG3 H N N 71 GLU HE2 H N N 72 GLU HXT H N N 73 GLY N N N N 74 GLY CA C N N 75 GLY C C N N 76 GLY O O N N 77 GLY OXT O N N 78 GLY H H N N 79 GLY H2 H N N 80 GLY HA2 H N N 81 GLY HA3 H N N 82 GLY HXT H N N 83 VAL N N N N 84 VAL CA C N S 85 VAL C C N N 86 VAL O O N N 87 VAL CB C N N 88 VAL CG1 C N N 89 VAL CG2 C N N 90 VAL OXT O N N 91 VAL H H N N 92 VAL H2 H N N 93 VAL HA H N N 94 VAL HB H N N 95 VAL HG11 H N N 96 VAL HG12 H N N 97 VAL HG13 H N N 98 VAL HG21 H N N 99 VAL HG22 H N N 100 VAL HG23 H N N 101 VAL HXT H N N 102 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B9Z O01 C02 doub N N 1 A1B9Z C89 C88 doub Y N 2 A1B9Z C89 C37 sing Y N 3 A1B9Z C02 C36 sing N N 4 A1B9Z C88 C40 sing Y N 5 A1B9Z C36 C37 sing N N 6 A1B9Z C37 C38 doub Y N 7 A1B9Z C85 C86 doub Y N 8 A1B9Z C85 C48 sing Y N 9 A1B9Z C86 C45 sing Y N 10 A1B9Z C40 C41 sing N N 11 A1B9Z C40 C39 doub Y N 12 A1B9Z S87 C41 sing Y N 13 A1B9Z S87 C44 sing Y N 14 A1B9Z C41 C42 doub Y N 15 A1B9Z C49 C48 sing N N 16 A1B9Z C49 C50 sing N N 17 A1B9Z C38 C39 sing Y N 18 A1B9Z C48 C47 doub Y N 19 A1B9Z C44 C45 sing N N 20 A1B9Z C44 C43 doub Y N 21 A1B9Z C45 C46 doub Y N 22 A1B9Z C42 C43 sing Y N 23 A1B9Z C50 O84 doub N N 24 A1B9Z C47 C46 sing Y N 25 A1B9Z C36 H2 sing N N 26 A1B9Z C36 H3 sing N N 27 A1B9Z C38 H4 sing N N 28 A1B9Z C39 H5 sing N N 29 A1B9Z C42 H6 sing N N 30 A1B9Z C43 H7 sing N N 31 A1B9Z C46 H8 sing N N 32 A1B9Z C47 H9 sing N N 33 A1B9Z C49 H10 sing N N 34 A1B9Z C49 H11 sing N N 35 A1B9Z C85 H13 sing N N 36 A1B9Z C86 H14 sing N N 37 A1B9Z C88 H15 sing N N 38 A1B9Z C89 H16 sing N N 39 A1B9Z C02 O2 sing N N 40 A1B9Z C50 O1 sing N N 41 A1B9Z O2 H1 sing N N 42 A1B9Z O1 H12 sing N N 43 ALA N CA sing N N 44 ALA N H sing N N 45 ALA N H2 sing N N 46 ALA CA C sing N N 47 ALA CA CB sing N N 48 ALA CA HA sing N N 49 ALA C O doub N N 50 ALA C OXT sing N N 51 ALA CB HB1 sing N N 52 ALA CB HB2 sing N N 53 ALA CB HB3 sing N N 54 ALA OXT HXT sing N N 55 GLU N CA sing N N 56 GLU N H sing N N 57 GLU N H2 sing N N 58 GLU CA C sing N N 59 GLU CA CB sing N N 60 GLU CA HA sing N N 61 GLU C O doub N N 62 GLU C OXT sing N N 63 GLU CB CG sing N N 64 GLU CB HB2 sing N N 65 GLU CB HB3 sing N N 66 GLU CG CD sing N N 67 GLU CG HG2 sing N N 68 GLU CG HG3 sing N N 69 GLU CD OE1 doub N N 70 GLU CD OE2 sing N N 71 GLU OE2 HE2 sing N N 72 GLU OXT HXT sing N N 73 GLY N CA sing N N 74 GLY N H sing N N 75 GLY N H2 sing N N 76 GLY CA C sing N N 77 GLY CA HA2 sing N N 78 GLY CA HA3 sing N N 79 GLY C O doub N N 80 GLY C OXT sing N N 81 GLY OXT HXT sing N N 82 VAL N CA sing N N 83 VAL N H sing N N 84 VAL N H2 sing N N 85 VAL CA C sing N N 86 VAL CA CB sing N N 87 VAL CA HA sing N N 88 VAL C O doub N N 89 VAL C OXT sing N N 90 VAL CB CG1 sing N N 91 VAL CB CG2 sing N N 92 VAL CB HB sing N N 93 VAL CG1 HG11 sing N N 94 VAL CG1 HG12 sing N N 95 VAL CG1 HG13 sing N N 96 VAL CG2 HG21 sing N N 97 VAL CG2 HG22 sing N N 98 VAL CG2 HG23 sing N N 99 VAL OXT HXT sing N N 100 # _em_admin.current_status REL _em_admin.deposition_date 2025-04-15 _em_admin.deposition_site RCSB _em_admin.entry_id 9O7L _em_admin.last_update 2025-09-03 _em_admin.map_release_date 2025-07-30 _em_admin.title 'Cryo-EM of pi-conjugated Peptide 2 (6 strands)' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 178.8 _em_helical_entity.axial_rise_per_subunit 2.36 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.18.2_3874 ? 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? ? MASKING ? 4 ? ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM138756 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9O7L _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #