HEADER ISOMERASE/DNA 18-APR-25 9O9M TITLE CRYOEM STRUCTURE OF M. MAZEI TOPOISOMERASE VI-MINICIRCLE DNA COMPLEX TITLE 2 IN ASYMMETRIC STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT A; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: TYPE II DNA TOPOISOMERASE VI SUBUNIT A; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT B; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: TYPE II DNA TOPOISOMERASE VI SUBUNIT B,TOPOVI-B; COMPND 11 EC: 5.6.2.2; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: MINICIRCLE DNA (ARBITRARY MODEL SEQUENCE); COMPND 15 CHAIN: F, H; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI GO1; SOURCE 3 ORGANISM_TAXID: 192952; SOURCE 4 STRAIN: ATCC BAA-159 / DSM 3647 / GOE1 / GO1 / JCM 11833 / OCM 88; SOURCE 5 ATCC: BAA-159; SOURCE 6 GENE: TOP6A, MM_2418; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI GO1; SOURCE 13 ORGANISM_TAXID: 192952; SOURCE 14 STRAIN: ATCC BAA-159 / DSM 3647 / GOE1 / GO1 / JCM 11833 / OCM 88; SOURCE 15 ATCC: BAA-159; SOURCE 16 GENE: TOP6B, MM_2417; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 23 ORGANISM_TAXID: 32644; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: ZYCY10P3S2T KEYWDS TOPRIM, GHKL, MINICIRCLE DNA, SPO11, ISOMERASE-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR D.E.RICHMAN,J.M.BERGER REVDAT 1 25-FEB-26 9O9M 0 JRNL AUTH D.E.RICHMAN,T.J.WENDORFF,F.RASHID,C.BECK,Q.YAN,H.R.JOHNSON, JRNL AUTH 2 R.A.ECKERTY,J.M.FOGG,M.L.BAKER,L.ZECHIEDRICH,J.M.BERGER JRNL TITL SUPERCOILED DNA RECOGNITION AND CLEAVAGE CONTROL IN JRNL TITL 2 TOPOISOMERASE VI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOLO, EPU, CRYOSPARC, COOT, UCSF REMARK 3 CHIMERAX, ISOLDE, PHENIX, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, EMREADY REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2Q2E REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.800 REMARK 3 NUMBER OF PARTICLES : 293857 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9O9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-25. REMARK 100 THE DEPOSITION ID IS D_1000295149. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TOPOISOMERASE VI HETEROTETRAMER REMARK 245 (A2B2) BOUND TO MINICIRCLE DNA REMARK 245 AND ADPNP; TOP6 HETEROTETRAMER REMARK 245 (A2B2); 327 BP MINICIRCLE DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION CARRIED OUT IN REMARK 245 AIR REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : APPROXIMATELY 80 BP OF THE 327 REMARK 245 BP MINICIRCLE ARE VISIBLE IN EM IMAGING OF THE TOP6-DNA COMPLEX REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 50906 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : 130000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 ILE A 369 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 610 REMARK 465 LEU B 611 REMARK 465 VAL B 612 REMARK 465 THR B 613 REMARK 465 GLY B 614 REMARK 465 ALA B 615 REMARK 465 LYS B 616 REMARK 465 ALA B 617 REMARK 465 PHE B 618 REMARK 465 LYS B 619 REMARK 465 GLY B 620 REMARK 465 VAL B 621 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 GLY C 3 REMARK 465 GLU C 4 REMARK 465 LYS C 5 REMARK 465 GLY C 6 REMARK 465 SER C 7 REMARK 465 LYS C 8 REMARK 465 THR C 9 REMARK 465 ILE C 369 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 THR D 3 REMARK 465 PRO D 4 REMARK 465 GLU D 608 REMARK 465 GLU D 609 REMARK 465 GLU D 610 REMARK 465 LEU D 611 REMARK 465 VAL D 612 REMARK 465 THR D 613 REMARK 465 GLY D 614 REMARK 465 ALA D 615 REMARK 465 LYS D 616 REMARK 465 ALA D 617 REMARK 465 PHE D 618 REMARK 465 LYS D 619 REMARK 465 GLY D 620 REMARK 465 VAL D 621 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 603 CG1 CG2 CD1 REMARK 470 VAL B 604 CG1 CG2 REMARK 470 ILE D 603 CG1 CG2 CD1 REMARK 470 VAL D 604 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU D 317 HG SER D 318 1.51 REMARK 500 O THR A 81 HG1 THR A 85 1.53 REMARK 500 OD1 ASP B 80 HG1 THR B 174 1.54 REMARK 500 O TYR B 348 H GLY B 350 1.57 REMARK 500 O LEU C 129 HG1 THR C 133 1.57 REMARK 500 OE1 GLU B 23 HG1 THR B 153 1.57 REMARK 500 HG SER D 590 OE1 GLU D 593 1.58 REMARK 500 HG1 THR A 306 OD2 ASP A 309 1.59 REMARK 500 O LEU A 41 HG SER A 65 1.59 REMARK 500 HG1 THR C 306 OD2 ASP C 309 1.60 REMARK 500 O TYR B 348 N GLY B 350 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA F 1 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 DA F 5 OP1 - P - OP2 ANGL. DEV. = -9.9 DEGREES REMARK 500 DA F 7 OP1 - P - OP2 ANGL. DEV. = -9.4 DEGREES REMARK 500 DA F 7 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA F 7 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA F 9 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DA F 13 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DA F 17 OP1 - P - OP2 ANGL. DEV. = -9.4 DEGREES REMARK 500 DA F 23 OP1 - P - OP2 ANGL. DEV. = -9.0 DEGREES REMARK 500 DA F 29 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA F 29 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT F 30 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA F 31 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT F 32 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA F 39 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DA F 39 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 40 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA F 43 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 DT F 48 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA F 51 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DA F 63 OP1 - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 DA F 65 OP1 - P - OP2 ANGL. DEV. = -9.5 DEGREES REMARK 500 DA F 67 OP1 - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 DA F 69 OP1 - P - OP2 ANGL. DEV. = -9.4 DEGREES REMARK 500 DA F 71 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DT F 74 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA H 3 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT H 4 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DT H 6 OP1 - P - OP2 ANGL. DEV. = -9.6 DEGREES REMARK 500 DT H 8 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 DA H 13 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA H 19 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT H 20 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 DT H 20 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT H 26 OP1 - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 DA H 29 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT H 30 O3' - P - OP1 ANGL. DEV. = 7.9 DEGREES REMARK 500 DT H 30 OP1 - P - OP2 ANGL. DEV. = -10.0 DEGREES REMARK 500 DT H 30 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT H 38 OP1 - P - OP2 ANGL. DEV. = -9.6 DEGREES REMARK 500 DT H 38 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA H 43 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT H 48 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DA H 49 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA H 55 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT H 56 O3' - P - OP1 ANGL. DEV. = 7.7 DEGREES REMARK 500 DT H 56 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 DA H 59 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT H 60 OP1 - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DA H 69 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 33 -71.21 -120.41 REMARK 500 GLU A 34 -64.90 -137.96 REMARK 500 SER A 38 -157.39 -154.22 REMARK 500 GLU A 66 32.76 -142.32 REMARK 500 SER A 68 -139.38 45.98 REMARK 500 HIS A 141 75.11 55.56 REMARK 500 ASP A 194 53.92 -147.08 REMARK 500 GLU A 202 -117.57 58.18 REMARK 500 LYS A 227 56.94 36.65 REMARK 500 THR A 253 -168.79 -165.03 REMARK 500 SER A 273 12.68 57.36 REMARK 500 LEU A 276 30.93 -90.47 REMARK 500 THR A 282 72.28 -110.84 REMARK 500 ALA A 284 57.26 -99.46 REMARK 500 ASN B 25 33.67 -89.56 REMARK 500 ILE B 28 -46.94 115.65 REMARK 500 ASP B 61 119.19 -160.56 REMARK 500 ASP B 72 41.59 -142.68 REMARK 500 ASN B 81 59.84 -91.29 REMARK 500 PHE B 103 -62.21 -98.44 REMARK 500 GLN B 112 35.94 78.18 REMARK 500 GLN B 113 -41.72 -133.45 REMARK 500 ASP B 163 88.51 -153.37 REMARK 500 ALA B 182 57.38 -142.16 REMARK 500 ARG B 189 46.06 -78.48 REMARK 500 GLN B 190 18.95 -146.75 REMARK 500 LYS B 257 -175.20 -171.35 REMARK 500 LEU B 271 -9.75 67.58 REMARK 500 THR B 333 119.09 -160.79 REMARK 500 TYR B 348 -140.03 -136.06 REMARK 500 SER B 349 72.71 -60.23 REMARK 500 PRO B 366 172.37 -55.58 REMARK 500 ASN B 378 50.03 -141.21 REMARK 500 ARG B 379 -8.41 71.21 REMARK 500 GLN B 407 24.43 -146.24 REMARK 500 PRO B 413 -175.35 -66.35 REMARK 500 LYS B 551 -32.73 66.40 REMARK 500 VAL B 552 -123.10 15.26 REMARK 500 ASP C 112 -61.50 -101.75 REMARK 500 SER C 134 71.41 62.99 REMARK 500 THR C 161 -156.10 -143.47 REMARK 500 ASP C 194 7.26 -67.00 REMARK 500 TYR C 268 -158.47 -89.69 REMARK 500 SER C 273 -9.29 -59.20 REMARK 500 THR C 282 53.02 -149.87 REMARK 500 LEU C 351 -111.46 49.12 REMARK 500 ASN D 25 56.92 -100.21 REMARK 500 ASP D 61 89.12 -154.81 REMARK 500 ASN D 81 59.65 38.88 REMARK 500 GLN D 112 -15.53 -140.42 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 200 ILE A 201 -148.09 REMARK 500 SER C 38 VAL C 39 149.65 REMARK 500 LYS D 370 ILE D 371 149.54 REMARK 500 ILE D 373 MET D 374 149.66 REMARK 500 SER D 425 ILE D 426 144.93 REMARK 500 ASN D 511 LEU D 512 -142.22 REMARK 500 HIS D 515 ARG D 516 -146.23 REMARK 500 PHE D 542 ARG D 543 -147.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 209 0.08 SIDE CHAIN REMARK 500 ARG C 209 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 703 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 103 O REMARK 620 2 ALA B 105 O 80.7 REMARK 620 3 LYS B 107 O 143.5 64.3 REMARK 620 4 ILE B 426 O 136.7 102.6 65.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B 701 O1G REMARK 620 2 ANP B 701 O1B 117.9 REMARK 620 3 ANP B 701 N3B 72.1 70.4 REMARK 620 4 ANP B 701 O2A 144.8 87.8 97.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 48 OD1 REMARK 620 2 ANP D 701 O1G 161.8 REMARK 620 3 ANP D 701 N3B 105.9 78.5 REMARK 620 4 ANP D 701 O2A 112.1 84.4 96.7 REMARK 620 5 ANP D 701 O5' 55.5 142.7 91.0 61.0 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-70259 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF M. MAZEI TOPOISOMERASE VI-MINICIRCLE DNA REMARK 900 COMPLEX IN ASYMMETRIC STATE DBREF 9O9M A 1 369 UNP Q8PUB7 TOP6A_METMA 1 369 DBREF 9O9M B 1 621 UNP Q8PUB8 TOP6B_METMA 1 621 DBREF 9O9M C 1 369 UNP Q8PUB7 TOP6A_METMA 1 369 DBREF 9O9M D 1 621 UNP Q8PUB8 TOP6B_METMA 1 621 DBREF 9O9M F 1 74 PDB 9O9M 9O9M 1 74 DBREF 9O9M H 1 74 PDB 9O9M 9O9M 1 74 SEQRES 1 A 369 MET GLU GLY GLU LYS GLY SER LYS THR ARG LYS GLY ASP SEQRES 2 A 369 ALA LEU ALA ARG GLU LYS LEU LEU GLU ILE ALA GLU LYS SEQRES 3 A 369 ILE TYR ASN GLN PHE GLU GLU GLU VAL VAL PRO SER VAL SEQRES 4 A 369 SER LEU PRO SER ARG THR LYS ALA ASN LEU GLU TYR SER SEQRES 5 A 369 ASP GLU SER ASP VAL TRP VAL TYR GLY ASP ARG GLU SER SEQRES 6 A 369 GLU ARG SER ALA LYS THR VAL LYS GLY ALA PHE GLN LEU SEQRES 7 A 369 LEU LYS THR THR TYR ALA THR ASP PHE LEU ILE ASN GLU SEQRES 8 A 369 HIS LEU ALA ARG ASN ARG GLY SER THR LEU ARG GLU LEU SEQRES 9 A 369 TYR TYR ILE SER GLU GLY TRP ASP TYR ALA LYS PHE LYS SEQRES 10 A 369 GLU GLN GLY GLU SER ASP ARG LEU ILE GLU ASP LEU GLU SEQRES 11 A 369 ILE LEU THR SER LEU GLN ARG GLU TYR PHE HIS MET ARG SEQRES 12 A 369 PRO GLU GLU ASP GLY ALA THR MET PHE GLY PRO ILE GLU SEQRES 13 A 369 ILE THR GLU GLN THR LYS ARG GLY GLU ARG ASN ILE HIS SEQRES 14 A 369 CYS GLN LYS ASP VAL GLY GLU GLY GLY TYR GLN ILE PRO SEQRES 15 A 369 PHE ASN VAL GLU ASN ILE GLU PHE GLN LYS HIS ASP ALA SEQRES 16 A 369 SER MET ILE ILE ALA ILE GLU THR GLY GLY MET TYR ALA SEQRES 17 A 369 ARG LEU MET GLU ASN GLY PHE ASP GLU ALA TYR ASN ALA SEQRES 18 A 369 ILE LEU VAL HIS LEU LYS GLY GLN PRO ALA ARG SER THR SEQRES 19 A 369 ARG ARG ILE ILE LYS ARG MET ASN GLU GLU LEU GLY ILE SEQRES 20 A 369 PRO VAL ALA VAL PHE THR ASP GLY ASP PRO TRP SER TYR SEQRES 21 A 369 ARG ILE TYR ALA SER VAL ALA TYR GLY ALA ILE LYS SER SEQRES 22 A 369 ALA HIS LEU SER GLU PHE MET ALA THR PRO ALA ALA LYS SEQRES 23 A 369 PHE LEU GLY LEU GLN PRO SER ASP ILE VAL GLU TYR GLU SEQRES 24 A 369 LEU SER THR ASP LYS LEU THR GLU GLN ASP VAL SER ALA SEQRES 25 A 369 LEU ARG SER GLU LEU SER ASP PRO ARG PHE GLU SER ASP SEQRES 26 A 369 TYR TRP LYS GLU GLN ILE GLN LEU GLN LEU ASP ILE GLY SEQRES 27 A 369 LYS LYS ALA GLU GLN GLN ALA PHE ALA GLY LYS GLY LEU SEQRES 28 A 369 ASP PHE VAL THR GLU VAL TYR LEU PRO ASN ARG LEU LYS SEQRES 29 A 369 GLU MET GLY MET ILE SEQRES 1 B 621 MET GLU THR PRO ILE ALA GLU GLU LEU ALA LYS LYS GLN SEQRES 2 B 621 LYS SER ILE SER VAL ALA GLU PHE PHE GLU LYS ASN ARG SEQRES 3 B 621 GLN ILE LEU GLY PHE ASP SER ALA PRO ARG SER LEU ILE SEQRES 4 B 621 THR THR VAL LYS GLU ALA VAL ASP ASN ALA LEU ASP ALA SEQRES 5 B 621 CYS GLU GLU ALA GLY ILE LEU PRO ASP ILE LEU VAL GLN SEQRES 6 B 621 VAL GLU ARG THR GLY PRO ASP TYR VAL THR VAL ILE ILE SEQRES 7 B 621 GLU ASP ASN GLY PRO GLY ILE VAL ARG GLU GLN ILE PRO SEQRES 8 B 621 LYS VAL PHE ALA LYS LEU LEU TYR GLY SER ARG PHE HIS SEQRES 9 B 621 ALA LEU LYS GLN SER ARG GLY GLN GLN GLY ILE GLY ILE SEQRES 10 B 621 SER ALA ALA VAL LEU TYR ALA GLN MET THR ALA GLY ARG SEQRES 11 B 621 HIS THR LYS ILE LEU SER LYS THR SER PRO THR ALA PRO SEQRES 12 B 621 ALA HIS TYR TYR GLU LEU MET ILE ASN THR SER THR ASN SEQRES 13 B 621 GLU PRO ASP ILE LEU VAL ASP GLU VAL ARG ASP TRP PHE SEQRES 14 B 621 ARG PRO HIS GLY THR GLN ILE GLU LEU GLU MET ARG ALA SEQRES 15 B 621 ALA TYR VAL LYS GLY ARG ARG GLN SER ILE TYR GLU TYR SEQRES 16 B 621 LEU LYS ALA THR ALA ILE VAL ASN PRO HIS ALA ARG ILE SEQRES 17 B 621 THR LEU ILE ASP PRO ASP GLY ASN GLU GLU VAL PHE GLU SEQRES 18 B 621 ARG ALA THR ASP LYS MET PRO GLU PRO ALA GLU GLU ILE SEQRES 19 B 621 LEU PRO HIS PRO GLU GLY ILE GLU LEU GLY THR LEU MET SEQRES 20 B 621 LYS MET LEU HIS TYR THR GLU ARG GLN LYS LEU ALA PRO SEQRES 21 B 621 PHE LEU ARG TYR SER PHE CYS LYS ILE GLY LEU LEU THR SEQRES 22 B 621 ALA GLU GLU ILE CYS LYS ALA ALA GLY LEU ASP PRO GLU SEQRES 23 B 621 ILE ASP PRO HIS ALA LEU GLY ARG HIS GLU ALA ARG LYS SEQRES 24 B 621 LEU ILE GLU ALA PHE GLU LYS VAL LYS ILE MET ALA PRO SEQRES 25 B 621 PRO THR ASP CYS LEU SER PRO ILE GLY GLU ASP LEU ILE SEQRES 26 B 621 TYR ARG GLY LEU GLU LYS GLU THR THR VAL ASP PHE ILE SEQRES 27 B 621 ALA THR SER THR ARG LYS PRO ALA VAL TYR SER GLY ASN SEQRES 28 B 621 PRO PHE VAL VAL GLU VAL GLY MET ALA TYR GLY GLY ASN SEQRES 29 B 621 LEU PRO LYS GLU GLU LYS ILE SER ILE MET ARG PHE ALA SEQRES 30 B 621 ASN ARG VAL PRO LEU LEU TYR GLN GLN GLY GLY CYS VAL SEQRES 31 B 621 THR THR HIS ALA VAL GLU ASP ILE LYS TRP LYS GLN TYR SEQRES 32 B 621 GLY LEU ASN GLN PRO GLY GLY GLY ILE PRO VAL GLY PRO SEQRES 33 B 621 VAL ILE LEU LEU ILE HIS VAL ALA SER ILE ASN VAL PRO SEQRES 34 B 621 PHE THR SER GLU SER LYS ASP ALA ILE ALA ASP ILE PRO SEQRES 35 B 621 VAL ILE LYS GLU GLU ILE ASP LEU ALA ILE LYS GLU VAL SEQRES 36 B 621 ALA ARG LYS LEU LYS HIS TYR LEU SER LYS GLN SER ASN SEQRES 37 B 621 LEU LYS LYS ARG ARG GLU LYS GLU ILE ILE ILE THR LYS SEQRES 38 B 621 VAL LEU PRO LYS LEU ALA ALA LYS VAL ALA HIS VAL LEU SEQRES 39 B 621 GLU LYS ASP VAL PRO ASP ILE ASN PRO VAL VAL ALA LYS SEQRES 40 B 621 ILE MET GLY ASN LEU LEU VAL HIS ARG VAL ILE LYS ASN SEQRES 41 B 621 ASN GLY ASP GLY THR VAL ASP VAL ALA ILE LYS VAL LYS SEQRES 42 B 621 ASN PHE GLY THR SER ALA TYR SER PHE ARG VAL HIS GLU SEQRES 43 B 621 MET LEU PRO CYS LYS VAL SER GLY ALA LYS PRO GLU PRO SEQRES 44 B 621 LYS VAL VAL THR MET GLY ASN ASP TYR ASP TYR VAL TRP SEQRES 45 B 621 ASP ILE SER ALA SER ALA GLY SER SER LYS VAL LEU SER SEQRES 46 B 621 TYR LYS ILE GLU SER ALA SER GLU GLU GLU LEU GLN LYS SEQRES 47 B 621 LEU PRO GLN LEU ILE VAL GLU GLY ILE GLU GLU GLU LEU SEQRES 48 B 621 VAL THR GLY ALA LYS ALA PHE LYS GLY VAL SEQRES 1 C 369 MET GLU GLY GLU LYS GLY SER LYS THR ARG LYS GLY ASP SEQRES 2 C 369 ALA LEU ALA ARG GLU LYS LEU LEU GLU ILE ALA GLU LYS SEQRES 3 C 369 ILE TYR ASN GLN PHE GLU GLU GLU VAL VAL PRO SER VAL SEQRES 4 C 369 SER LEU PRO SER ARG THR LYS ALA ASN LEU GLU TYR SER SEQRES 5 C 369 ASP GLU SER ASP VAL TRP VAL TYR GLY ASP ARG GLU SER SEQRES 6 C 369 GLU ARG SER ALA LYS THR VAL LYS GLY ALA PHE GLN LEU SEQRES 7 C 369 LEU LYS THR THR TYR ALA THR ASP PHE LEU ILE ASN GLU SEQRES 8 C 369 HIS LEU ALA ARG ASN ARG GLY SER THR LEU ARG GLU LEU SEQRES 9 C 369 TYR TYR ILE SER GLU GLY TRP ASP TYR ALA LYS PHE LYS SEQRES 10 C 369 GLU GLN GLY GLU SER ASP ARG LEU ILE GLU ASP LEU GLU SEQRES 11 C 369 ILE LEU THR SER LEU GLN ARG GLU TYR PHE HIS MET ARG SEQRES 12 C 369 PRO GLU GLU ASP GLY ALA THR MET PHE GLY PRO ILE GLU SEQRES 13 C 369 ILE THR GLU GLN THR LYS ARG GLY GLU ARG ASN ILE HIS SEQRES 14 C 369 CYS GLN LYS ASP VAL GLY GLU GLY GLY TYR GLN ILE PRO SEQRES 15 C 369 PHE ASN VAL GLU ASN ILE GLU PHE GLN LYS HIS ASP ALA SEQRES 16 C 369 SER MET ILE ILE ALA ILE GLU THR GLY GLY MET TYR ALA SEQRES 17 C 369 ARG LEU MET GLU ASN GLY PHE ASP GLU ALA TYR ASN ALA SEQRES 18 C 369 ILE LEU VAL HIS LEU LYS GLY GLN PRO ALA ARG SER THR SEQRES 19 C 369 ARG ARG ILE ILE LYS ARG MET ASN GLU GLU LEU GLY ILE SEQRES 20 C 369 PRO VAL ALA VAL PHE THR ASP GLY ASP PRO TRP SER TYR SEQRES 21 C 369 ARG ILE TYR ALA SER VAL ALA TYR GLY ALA ILE LYS SER SEQRES 22 C 369 ALA HIS LEU SER GLU PHE MET ALA THR PRO ALA ALA LYS SEQRES 23 C 369 PHE LEU GLY LEU GLN PRO SER ASP ILE VAL GLU TYR GLU SEQRES 24 C 369 LEU SER THR ASP LYS LEU THR GLU GLN ASP VAL SER ALA SEQRES 25 C 369 LEU ARG SER GLU LEU SER ASP PRO ARG PHE GLU SER ASP SEQRES 26 C 369 TYR TRP LYS GLU GLN ILE GLN LEU GLN LEU ASP ILE GLY SEQRES 27 C 369 LYS LYS ALA GLU GLN GLN ALA PHE ALA GLY LYS GLY LEU SEQRES 28 C 369 ASP PHE VAL THR GLU VAL TYR LEU PRO ASN ARG LEU LYS SEQRES 29 C 369 GLU MET GLY MET ILE SEQRES 1 D 621 MET GLU THR PRO ILE ALA GLU GLU LEU ALA LYS LYS GLN SEQRES 2 D 621 LYS SER ILE SER VAL ALA GLU PHE PHE GLU LYS ASN ARG SEQRES 3 D 621 GLN ILE LEU GLY PHE ASP SER ALA PRO ARG SER LEU ILE SEQRES 4 D 621 THR THR VAL LYS GLU ALA VAL ASP ASN ALA LEU ASP ALA SEQRES 5 D 621 CYS GLU GLU ALA GLY ILE LEU PRO ASP ILE LEU VAL GLN SEQRES 6 D 621 VAL GLU ARG THR GLY PRO ASP TYR VAL THR VAL ILE ILE SEQRES 7 D 621 GLU ASP ASN GLY PRO GLY ILE VAL ARG GLU GLN ILE PRO SEQRES 8 D 621 LYS VAL PHE ALA LYS LEU LEU TYR GLY SER ARG PHE HIS SEQRES 9 D 621 ALA LEU LYS GLN SER ARG GLY GLN GLN GLY ILE GLY ILE SEQRES 10 D 621 SER ALA ALA VAL LEU TYR ALA GLN MET THR ALA GLY ARG SEQRES 11 D 621 HIS THR LYS ILE LEU SER LYS THR SER PRO THR ALA PRO SEQRES 12 D 621 ALA HIS TYR TYR GLU LEU MET ILE ASN THR SER THR ASN SEQRES 13 D 621 GLU PRO ASP ILE LEU VAL ASP GLU VAL ARG ASP TRP PHE SEQRES 14 D 621 ARG PRO HIS GLY THR GLN ILE GLU LEU GLU MET ARG ALA SEQRES 15 D 621 ALA TYR VAL LYS GLY ARG ARG GLN SER ILE TYR GLU TYR SEQRES 16 D 621 LEU LYS ALA THR ALA ILE VAL ASN PRO HIS ALA ARG ILE SEQRES 17 D 621 THR LEU ILE ASP PRO ASP GLY ASN GLU GLU VAL PHE GLU SEQRES 18 D 621 ARG ALA THR ASP LYS MET PRO GLU PRO ALA GLU GLU ILE SEQRES 19 D 621 LEU PRO HIS PRO GLU GLY ILE GLU LEU GLY THR LEU MET SEQRES 20 D 621 LYS MET LEU HIS TYR THR GLU ARG GLN LYS LEU ALA PRO SEQRES 21 D 621 PHE LEU ARG TYR SER PHE CYS LYS ILE GLY LEU LEU THR SEQRES 22 D 621 ALA GLU GLU ILE CYS LYS ALA ALA GLY LEU ASP PRO GLU SEQRES 23 D 621 ILE ASP PRO HIS ALA LEU GLY ARG HIS GLU ALA ARG LYS SEQRES 24 D 621 LEU ILE GLU ALA PHE GLU LYS VAL LYS ILE MET ALA PRO SEQRES 25 D 621 PRO THR ASP CYS LEU SER PRO ILE GLY GLU ASP LEU ILE SEQRES 26 D 621 TYR ARG GLY LEU GLU LYS GLU THR THR VAL ASP PHE ILE SEQRES 27 D 621 ALA THR SER THR ARG LYS PRO ALA VAL TYR SER GLY ASN SEQRES 28 D 621 PRO PHE VAL VAL GLU VAL GLY MET ALA TYR GLY GLY ASN SEQRES 29 D 621 LEU PRO LYS GLU GLU LYS ILE SER ILE MET ARG PHE ALA SEQRES 30 D 621 ASN ARG VAL PRO LEU LEU TYR GLN GLN GLY GLY CYS VAL SEQRES 31 D 621 THR THR HIS ALA VAL GLU ASP ILE LYS TRP LYS GLN TYR SEQRES 32 D 621 GLY LEU ASN GLN PRO GLY GLY GLY ILE PRO VAL GLY PRO SEQRES 33 D 621 VAL ILE LEU LEU ILE HIS VAL ALA SER ILE ASN VAL PRO SEQRES 34 D 621 PHE THR SER GLU SER LYS ASP ALA ILE ALA ASP ILE PRO SEQRES 35 D 621 VAL ILE LYS GLU GLU ILE ASP LEU ALA ILE LYS GLU VAL SEQRES 36 D 621 ALA ARG LYS LEU LYS HIS TYR LEU SER LYS GLN SER ASN SEQRES 37 D 621 LEU LYS LYS ARG ARG GLU LYS GLU ILE ILE ILE THR LYS SEQRES 38 D 621 VAL LEU PRO LYS LEU ALA ALA LYS VAL ALA HIS VAL LEU SEQRES 39 D 621 GLU LYS ASP VAL PRO ASP ILE ASN PRO VAL VAL ALA LYS SEQRES 40 D 621 ILE MET GLY ASN LEU LEU VAL HIS ARG VAL ILE LYS ASN SEQRES 41 D 621 ASN GLY ASP GLY THR VAL ASP VAL ALA ILE LYS VAL LYS SEQRES 42 D 621 ASN PHE GLY THR SER ALA TYR SER PHE ARG VAL HIS GLU SEQRES 43 D 621 MET LEU PRO CYS LYS VAL SER GLY ALA LYS PRO GLU PRO SEQRES 44 D 621 LYS VAL VAL THR MET GLY ASN ASP TYR ASP TYR VAL TRP SEQRES 45 D 621 ASP ILE SER ALA SER ALA GLY SER SER LYS VAL LEU SER SEQRES 46 D 621 TYR LYS ILE GLU SER ALA SER GLU GLU GLU LEU GLN LYS SEQRES 47 D 621 LEU PRO GLN LEU ILE VAL GLU GLY ILE GLU GLU GLU LEU SEQRES 48 D 621 VAL THR GLY ALA LYS ALA PHE LYS GLY VAL SEQRES 1 F 74 DA DT DA DT DA DT DA DT DA DT DA DT DA SEQRES 2 F 74 DT DA DT DA DT DA DT DA DT DA DT DA DT SEQRES 3 F 74 DA DT DA DT DA DT DA DT DA DT DA DT DA SEQRES 4 F 74 DT DA DT DA DT DA DT DA DT DA DT DA DT SEQRES 5 F 74 DA DT DA DT DA DT DA DT DA DT DA DT DA SEQRES 6 F 74 DT DA DT DA DT DA DT DA DT SEQRES 1 H 74 DA DT DA DT DA DT DA DT DA DT DA DT DA SEQRES 2 H 74 DT DA DT DA DT DA DT DA DT DA DT DA DT SEQRES 3 H 74 DA DT DA DT DA DT DA DT DA DT DA DT DA SEQRES 4 H 74 DT DA DT DA DT DA DT DA DT DA DT DA DT SEQRES 5 H 74 DA DT DA DT DA DT DA DT DA DT DA DT DA SEQRES 6 H 74 DT DA DT DA DT DA DT DA DT HET ANP B 701 44 HET MG B 702 1 HET K B 703 1 HET ANP D 701 44 HET MG D 702 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION FORMUL 7 ANP 2(C10 H17 N6 O12 P3) FORMUL 8 MG 2(MG 2+) FORMUL 9 K K 1+ HELIX 1 AA1 LYS A 11 GLU A 32 1 22 HELIX 2 AA2 THR A 45 ALA A 47 5 3 HELIX 3 AA3 ARG A 67 LYS A 70 5 4 HELIX 4 AA4 THR A 71 GLU A 91 1 21 HELIX 5 AA5 THR A 100 SER A 108 1 9 HELIX 6 AA6 GLU A 109 TRP A 111 5 3 HELIX 7 AA7 GLU A 118 SER A 134 1 17 HELIX 8 AA8 CYS A 170 VAL A 174 1 5 HELIX 9 AA9 ASN A 184 ILE A 188 5 5 HELIX 10 AB1 THR A 203 ASN A 213 1 11 HELIX 11 AB2 GLY A 214 TYR A 219 1 6 HELIX 12 AB3 ALA A 231 GLU A 243 1 13 HELIX 13 AB4 ASP A 256 GLY A 269 1 14 HELIX 14 AB5 LEU A 276 ALA A 281 1 6 HELIX 15 AB6 GLN A 291 GLU A 299 1 9 HELIX 16 AB7 THR A 306 ASP A 319 1 14 HELIX 17 AB8 PRO A 320 GLU A 323 5 4 HELIX 18 AB9 SER A 324 GLY A 338 1 15 HELIX 19 AC1 GLU A 342 GLY A 350 1 9 HELIX 20 AC2 ASP A 352 GLY A 367 1 16 HELIX 21 AC3 ALA B 6 GLN B 13 1 8 HELIX 22 AC4 SER B 17 ASN B 25 1 9 HELIX 23 AC5 ASN B 25 GLY B 30 1 6 HELIX 24 AC6 SER B 33 GLY B 57 1 25 HELIX 25 AC7 GLN B 89 LYS B 96 1 8 HELIX 26 AC8 ILE B 115 GLY B 129 1 15 HELIX 27 AC9 SER B 191 ASN B 203 1 13 HELIX 28 AD1 GLU B 242 THR B 253 1 12 HELIX 29 AD2 LEU B 258 SER B 265 1 8 HELIX 30 AD3 THR B 273 GLY B 282 1 10 HELIX 31 AD4 ASP B 284 ASP B 288 5 5 HELIX 32 AD5 GLU B 296 GLU B 305 1 10 HELIX 33 AD6 GLY B 321 THR B 333 1 13 HELIX 34 AD7 GLN B 385 GLY B 388 5 4 HELIX 35 AD8 CYS B 389 ILE B 398 1 10 HELIX 36 AD9 LYS B 399 TYR B 403 5 5 HELIX 37 AE1 ILE B 441 LYS B 481 1 41 HELIX 38 AE2 LYS B 481 GLU B 495 1 15 HELIX 39 AE3 ASP B 500 MET B 509 1 10 HELIX 40 AE4 GLU B 593 LYS B 598 5 6 HELIX 41 AE5 LYS C 11 GLU C 33 1 23 HELIX 42 AE6 THR C 45 ALA C 47 5 3 HELIX 43 AE7 THR C 71 HIS C 92 1 22 HELIX 44 AE8 THR C 100 GLY C 110 1 11 HELIX 45 AE9 GLN C 119 SER C 134 1 16 HELIX 46 AF1 GLN C 136 HIS C 141 1 6 HELIX 47 AF2 ASN C 184 ILE C 188 5 5 HELIX 48 AF3 THR C 203 GLY C 214 1 12 HELIX 49 AF4 PHE C 215 ASN C 220 1 6 HELIX 50 AF5 ALA C 231 LEU C 245 1 15 HELIX 51 AF6 ASP C 256 TYR C 268 1 13 HELIX 52 AF7 SER C 273 ALA C 281 1 9 HELIX 53 AF8 GLN C 291 GLU C 299 1 9 HELIX 54 AF9 THR C 306 ASP C 319 1 14 HELIX 55 AG1 SER C 324 GLY C 338 1 15 HELIX 56 AG2 GLU C 342 LYS C 349 1 8 HELIX 57 AG3 ASP C 352 VAL C 357 1 6 HELIX 58 AG4 VAL C 357 GLY C 367 1 11 HELIX 59 AG5 ALA D 6 GLN D 13 1 8 HELIX 60 AG6 SER D 17 ASN D 25 1 9 HELIX 61 AG7 ARG D 26 GLY D 30 5 5 HELIX 62 AG8 SER D 33 GLY D 57 1 25 HELIX 63 AG9 GLU D 88 ALA D 95 1 8 HELIX 64 AH1 GLY D 100 HIS D 104 5 5 HELIX 65 AH2 ILE D 115 GLY D 129 1 15 HELIX 66 AH3 SER D 191 ASN D 203 1 13 HELIX 67 AH4 GLU D 242 THR D 253 1 12 HELIX 68 AH5 LYS D 257 PHE D 266 1 10 HELIX 69 AH6 GLY D 270 GLY D 282 1 13 HELIX 70 AH7 ASP D 288 LEU D 292 5 5 HELIX 71 AH8 GLY D 293 VAL D 307 1 15 HELIX 72 AH9 PRO D 313 LEU D 317 5 5 HELIX 73 AI1 GLY D 321 THR D 333 1 13 HELIX 74 AI2 CYS D 389 ILE D 398 1 10 HELIX 75 AI3 ILE D 441 LEU D 494 1 54 HELIX 76 AI4 ILE D 501 GLY D 510 1 10 HELIX 77 AI5 ALA D 576 SER D 580 5 5 SHEET 1 AA1 2 LEU A 49 TYR A 51 0 SHEET 2 AA1 2 TRP A 58 TYR A 60 -1 O VAL A 59 N GLU A 50 SHEET 1 AA2 5 THR A 150 PHE A 152 0 SHEET 2 AA2 5 ALA A 221 HIS A 225 -1 O HIS A 225 N THR A 150 SHEET 3 AA2 5 MET A 197 ALA A 200 1 N ILE A 199 O ILE A 222 SHEET 4 AA2 5 VAL A 249 VAL A 251 1 O ALA A 250 N ILE A 198 SHEET 5 AA2 5 ALA A 285 PHE A 287 1 O LYS A 286 N VAL A 249 SHEET 1 AA3 3 GLY A 164 HIS A 169 0 SHEET 2 AA3 3 ILE A 155 THR A 161 -1 N THR A 161 O GLY A 164 SHEET 3 AA3 3 GLU A 189 HIS A 193 -1 O GLU A 189 N THR A 158 SHEET 1 AA4 8 PRO B 158 ARG B 166 0 SHEET 2 AA4 8 ALA B 144 ILE B 151 -1 N TYR B 146 O GLU B 164 SHEET 3 AA4 8 THR B 132 LYS B 137 -1 N ILE B 134 O TYR B 147 SHEET 4 AA4 8 GLY B 173 MET B 180 -1 O GLY B 173 N LYS B 137 SHEET 5 AA4 8 VAL B 74 ASP B 80 -1 N ILE B 78 O ILE B 176 SHEET 6 AA4 8 ILE B 62 ARG B 68 -1 N GLU B 67 O THR B 75 SHEET 7 AA4 8 ILE B 208 ILE B 211 1 O THR B 209 N VAL B 64 SHEET 8 AA4 8 GLU B 217 PHE B 220 -1 O PHE B 220 N ILE B 208 SHEET 1 AA5 4 PHE B 337 SER B 341 0 SHEET 2 AA5 4 PHE B 353 TYR B 361 -1 O VAL B 357 N SER B 341 SHEET 3 AA5 4 VAL B 417 SER B 425 -1 O LEU B 420 N GLY B 358 SHEET 4 AA5 4 SER B 372 ARG B 375 1 N MET B 374 O ILE B 421 SHEET 1 AA6 3 LEU B 512 ASN B 520 0 SHEET 2 AA6 3 GLY B 524 VAL B 532 -1 O ALA B 529 N HIS B 515 SHEET 3 AA6 3 SER B 581 ILE B 588 -1 O LEU B 584 N VAL B 528 SHEET 1 AA7 2 SER B 541 LEU B 548 0 SHEET 2 AA7 2 TYR B 568 SER B 575 -1 O ILE B 574 N PHE B 542 SHEET 1 AA8 2 SER C 40 PRO C 42 0 SHEET 2 AA8 2 GLU C 64 GLU C 66 -1 O SER C 65 N LEU C 41 SHEET 1 AA9 2 LEU C 49 TYR C 51 0 SHEET 2 AA9 2 TRP C 58 TYR C 60 -1 O VAL C 59 N GLU C 50 SHEET 1 AB1 5 TYR C 179 GLN C 180 0 SHEET 2 AB1 5 THR C 150 PHE C 152 -1 N MET C 151 O TYR C 179 SHEET 3 AB1 5 ALA C 221 HIS C 225 -1 O LEU C 223 N PHE C 152 SHEET 4 AB1 5 MET C 197 ILE C 201 1 N ILE C 201 O VAL C 224 SHEET 5 AB1 5 VAL C 249 PHE C 252 1 O PHE C 252 N ALA C 200 SHEET 1 AB2 2 GLU C 156 ILE C 157 0 SHEET 2 AB2 2 ILE C 168 HIS C 169 -1 O ILE C 168 N ILE C 157 SHEET 1 AB3 2 THR C 302 LYS C 304 0 SHEET 2 AB3 2 LYS C 339 ALA C 341 -1 O LYS C 340 N ASP C 303 SHEET 1 AB4 8 GLU D 157 ARG D 166 0 SHEET 2 AB4 8 ALA D 144 ASN D 152 -1 N TYR D 146 O GLU D 164 SHEET 3 AB4 8 THR D 132 LYS D 137 -1 N THR D 132 O LEU D 149 SHEET 4 AB4 8 GLY D 173 ARG D 181 -1 O GLN D 175 N LEU D 135 SHEET 5 AB4 8 TYR D 73 GLU D 79 -1 N VAL D 74 O MET D 180 SHEET 6 AB4 8 ASP D 61 ARG D 68 -1 N GLU D 67 O THR D 75 SHEET 7 AB4 8 ARG D 207 ILE D 211 1 O ARG D 207 N ILE D 62 SHEET 8 AB4 8 GLU D 217 PHE D 220 -1 O GLU D 218 N LEU D 210 SHEET 1 AB5 5 PHE D 337 THR D 342 0 SHEET 2 AB5 5 VAL D 355 TYR D 361 -1 O TYR D 361 N PHE D 337 SHEET 3 AB5 5 ILE D 418 VAL D 423 -1 O LEU D 420 N GLY D 358 SHEET 4 AB5 5 ILE D 373 ALA D 377 1 N PHE D 376 O ILE D 421 SHEET 5 AB5 5 VAL D 380 LEU D 382 -1 O LEU D 382 N ARG D 375 SHEET 1 AB6 2 ALA D 346 VAL D 347 0 SHEET 2 AB6 2 PRO D 352 PHE D 353 -1 O PHE D 353 N ALA D 346 SHEET 1 AB7 3 VAL D 517 ASN D 520 0 SHEET 2 AB7 3 GLY D 524 ILE D 530 -1 O ASP D 527 N VAL D 517 SHEET 3 AB7 3 LYS D 582 ILE D 588 -1 O TYR D 586 N VAL D 526 LINK O PHE B 103 K K B 703 1555 1555 2.96 LINK O ALA B 105 K K B 703 1555 1555 2.79 LINK O LYS B 107 K K B 703 1555 1555 3.40 LINK O ILE B 426 K K B 703 1555 1555 2.64 LINK O1G ANP B 701 MG MG B 702 1555 1555 1.98 LINK O1B ANP B 701 MG MG B 702 1555 1555 1.98 LINK N3B ANP B 701 MG MG B 702 1555 1555 2.48 LINK O2A ANP B 701 MG MG B 702 1555 1555 1.85 LINK OD1 ASN D 48 MG MG D 702 1555 1555 2.07 LINK O1G ANP D 701 MG MG D 702 1555 1555 2.18 LINK N3B ANP D 701 MG MG D 702 1555 1555 2.06 LINK O2A ANP D 701 MG MG D 702 1555 1555 1.80 LINK O5' ANP D 701 MG MG D 702 1555 1555 2.88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 725635254 CONECT 729335254 CONECT 732235254 CONECT1233435254 CONECT2166135299 CONECT3520935210352113521235216 CONECT352103520935253 CONECT3521135209 CONECT3521235209 CONECT3521335214352153521635220 CONECT352143521335253 CONECT3521535213 CONECT3521635209352133524035253 CONECT3521735218352193522035221 CONECT3521835217 CONECT352193521735253 CONECT352203521335217 CONECT352213521735222 CONECT3522235221352233524135242 CONECT3522335222352243522535243 CONECT352243522335229 CONECT3522535223352263522735244 CONECT352263522535245 CONECT3522735225352283522935246 CONECT352283522735247 CONECT3522935224352273523035248 CONECT35230352293523135239 CONECT35231352303523235249 CONECT352323523135233 CONECT35233352323523435239 CONECT35234352333523535236 CONECT35235352343525035251 CONECT352363523435237 CONECT35237352363523835252 CONECT352383523735239 CONECT35239352303523335238 CONECT3524035216 CONECT3524135222 CONECT3524235222 CONECT3524335223 CONECT3524435225 CONECT3524535226 CONECT3524635227 CONECT3524735228 CONECT3524835229 CONECT3524935231 CONECT3525035235 CONECT3525135235 CONECT3525235237 CONECT3525335210352143521635219 CONECT35254 7256 7293 732212334 CONECT3525535256352573525835262 CONECT352563525535299 CONECT3525735255 CONECT3525835255 CONECT3525935260352613526235266 CONECT3526035259 CONECT3526135259 CONECT3526235255352593528635299 CONECT3526335264352653526635267 CONECT3526435263 CONECT352653526335299 CONECT352663525935263 CONECT35267352633526835299 CONECT3526835267352693528735288 CONECT3526935268352703527135289 CONECT352703526935275 CONECT3527135269352723527335290 CONECT352723527135291 CONECT3527335271352743527535292 CONECT352743527335293 CONECT3527535270352733527635294 CONECT35276352753527735285 CONECT35277352763527835295 CONECT352783527735279 CONECT35279352783528035285 CONECT35280352793528135282 CONECT35281352803529635297 CONECT352823528035283 CONECT35283352823528435298 CONECT352843528335285 CONECT35285352763527935284 CONECT3528635262 CONECT3528735268 CONECT3528835268 CONECT3528935269 CONECT3529035271 CONECT3529135272 CONECT3529235273 CONECT3529335274 CONECT3529435275 CONECT3529535277 CONECT3529635281 CONECT3529735281 CONECT3529835283 CONECT3529921661352563526235265 CONECT3529935267 MASTER 401 0 5 77 58 0 0 618299 6 97 166 END