data_9ONC # _entry.id 9ONC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9ONC pdb_00009onc 10.2210/pdb9onc/pdb WWPDB D_1000295908 ? ? EMDB EMD-70636 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-05-20 ? 2 'EM metadata' 1 0 2026-05-20 ? 3 'Additional map' 1 0 2026-05-20 1 4 FSC 1 0 2026-05-20 ? 5 'Half map' 1 0 2026-05-20 1 6 'Half map' 1 0 2026-05-20 2 7 Image 1 0 2026-05-20 ? 8 Mask 1 0 2026-05-20 1 9 'Primary map' 1 0 2026-05-20 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9ONC _pdbx_database_status.recvd_initial_deposition_date 2025-05-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-70294 'other EM volume' EMDB 'A-beta42-Met-R-SO amyloidal fibril - class3' EMD-70636 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email jraskato@ucsc.edu _pdbx_contact_author.name_first Jevgenij _pdbx_contact_author.name_last Raskatov _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0082-9113 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chan, K.L.' 1 0009-0008-2504-0865 'Boyer, D.' 2 0000-0002-4487-0230 'Balasco Serrao, V.H.' 3 0000-0002-9398-2941 'Raskatov, J.A.' 4 0000-0002-0082-9113 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Impact of stereospecific methionine oxidation on A-beta 42 fibril structure' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chan, K.L.' 1 0009-0008-2504-0865 primary 'Boyer, D.' 2 0000-0002-4487-0230 primary 'Balasco Serrao, V.H.' 3 0000-0002-9398-2941 primary 'Raskatov, J.A.' 4 0000-0002-0082-9113 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Amyloid-beta precursor protein' _entity.formula_weight 2594.056 _entity.pdbx_number_of_molecules 10 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;APP,ABPP,APPI,Alzheimer disease amyloid A4 protein homolog,Alzheimer disease amyloid protein,Amyloid precursor protein,Amyloid-beta (A4) precursor protein,Amyloid-beta A4 protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'LVFFAEDVGSNKGAIIGL(SME)VGGVVIA' _entity_poly.pdbx_seq_one_letter_code_can LVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 VAL n 1 3 PHE n 1 4 PHE n 1 5 ALA n 1 6 GLU n 1 7 ASP n 1 8 VAL n 1 9 GLY n 1 10 SER n 1 11 ASN n 1 12 LYS n 1 13 GLY n 1 14 ALA n 1 15 ILE n 1 16 ILE n 1 17 GLY n 1 18 LEU n 1 19 SME n 1 20 VAL n 1 21 GLY n 1 22 GLY n 1 23 VAL n 1 24 VAL n 1 25 ILE n 1 26 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SME 'L-peptide linking' n 'METHIONINE SULFOXIDE' ? 'C5 H11 N O3 S' 165.211 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 17 17 LEU LEU A . n A 1 2 VAL 2 18 18 VAL VAL A . n A 1 3 PHE 3 19 19 PHE PHE A . n A 1 4 PHE 4 20 20 PHE PHE A . n A 1 5 ALA 5 21 21 ALA ALA A . n A 1 6 GLU 6 22 22 GLU GLU A . n A 1 7 ASP 7 23 23 ASP ASP A . n A 1 8 VAL 8 24 24 VAL VAL A . n A 1 9 GLY 9 25 25 GLY GLY A . n A 1 10 SER 10 26 26 SER SER A . n A 1 11 ASN 11 27 27 ASN ASN A . n A 1 12 LYS 12 28 28 LYS LYS A . n A 1 13 GLY 13 29 29 GLY GLY A . n A 1 14 ALA 14 30 30 ALA ALA A . n A 1 15 ILE 15 31 31 ILE ILE A . n A 1 16 ILE 16 32 32 ILE ILE A . n A 1 17 GLY 17 33 33 GLY GLY A . n A 1 18 LEU 18 34 34 LEU LEU A . n A 1 19 SME 19 35 35 SME SME A . n A 1 20 VAL 20 36 36 VAL VAL A . n A 1 21 GLY 21 37 37 GLY GLY A . n A 1 22 GLY 22 38 38 GLY GLY A . n A 1 23 VAL 23 39 39 VAL VAL A . n A 1 24 VAL 24 40 40 VAL VAL A . n A 1 25 ILE 25 41 41 ILE ILE A . n A 1 26 ALA 26 42 ? ? ? A . n B 1 1 LEU 1 17 17 LEU LEU B . n B 1 2 VAL 2 18 18 VAL VAL B . n B 1 3 PHE 3 19 19 PHE PHE B . n B 1 4 PHE 4 20 20 PHE PHE B . n B 1 5 ALA 5 21 21 ALA ALA B . n B 1 6 GLU 6 22 22 GLU GLU B . n B 1 7 ASP 7 23 23 ASP ASP B . n B 1 8 VAL 8 24 24 VAL VAL B . n B 1 9 GLY 9 25 25 GLY GLY B . n B 1 10 SER 10 26 26 SER SER B . n B 1 11 ASN 11 27 27 ASN ASN B . n B 1 12 LYS 12 28 28 LYS LYS B . n B 1 13 GLY 13 29 29 GLY GLY B . n B 1 14 ALA 14 30 30 ALA ALA B . n B 1 15 ILE 15 31 31 ILE ILE B . n B 1 16 ILE 16 32 32 ILE ILE B . n B 1 17 GLY 17 33 33 GLY GLY B . n B 1 18 LEU 18 34 34 LEU LEU B . n B 1 19 SME 19 35 35 SME SME B . n B 1 20 VAL 20 36 36 VAL VAL B . n B 1 21 GLY 21 37 37 GLY GLY B . n B 1 22 GLY 22 38 38 GLY GLY B . n B 1 23 VAL 23 39 39 VAL VAL B . n B 1 24 VAL 24 40 40 VAL VAL B . n B 1 25 ILE 25 41 41 ILE ILE B . n B 1 26 ALA 26 42 ? ? ? B . n C 1 1 LEU 1 17 17 LEU LEU C . n C 1 2 VAL 2 18 18 VAL VAL C . n C 1 3 PHE 3 19 19 PHE PHE C . n C 1 4 PHE 4 20 20 PHE PHE C . n C 1 5 ALA 5 21 21 ALA ALA C . n C 1 6 GLU 6 22 22 GLU GLU C . n C 1 7 ASP 7 23 23 ASP ASP C . n C 1 8 VAL 8 24 24 VAL VAL C . n C 1 9 GLY 9 25 25 GLY GLY C . n C 1 10 SER 10 26 26 SER SER C . n C 1 11 ASN 11 27 27 ASN ASN C . n C 1 12 LYS 12 28 28 LYS LYS C . n C 1 13 GLY 13 29 29 GLY GLY C . n C 1 14 ALA 14 30 30 ALA ALA C . n C 1 15 ILE 15 31 31 ILE ILE C . n C 1 16 ILE 16 32 32 ILE ILE C . n C 1 17 GLY 17 33 33 GLY GLY C . n C 1 18 LEU 18 34 34 LEU LEU C . n C 1 19 SME 19 35 35 SME SME C . n C 1 20 VAL 20 36 36 VAL VAL C . n C 1 21 GLY 21 37 37 GLY GLY C . n C 1 22 GLY 22 38 38 GLY GLY C . n C 1 23 VAL 23 39 39 VAL VAL C . n C 1 24 VAL 24 40 40 VAL VAL C . n C 1 25 ILE 25 41 41 ILE ILE C . n C 1 26 ALA 26 42 ? ? ? C . n D 1 1 LEU 1 17 17 LEU LEU D . n D 1 2 VAL 2 18 18 VAL VAL D . n D 1 3 PHE 3 19 19 PHE PHE D . n D 1 4 PHE 4 20 20 PHE PHE D . n D 1 5 ALA 5 21 21 ALA ALA D . n D 1 6 GLU 6 22 22 GLU GLU D . n D 1 7 ASP 7 23 23 ASP ASP D . n D 1 8 VAL 8 24 24 VAL VAL D . n D 1 9 GLY 9 25 25 GLY GLY D . n D 1 10 SER 10 26 26 SER SER D . n D 1 11 ASN 11 27 27 ASN ASN D . n D 1 12 LYS 12 28 28 LYS LYS D . n D 1 13 GLY 13 29 29 GLY GLY D . n D 1 14 ALA 14 30 30 ALA ALA D . n D 1 15 ILE 15 31 31 ILE ILE D . n D 1 16 ILE 16 32 32 ILE ILE D . n D 1 17 GLY 17 33 33 GLY GLY D . n D 1 18 LEU 18 34 34 LEU LEU D . n D 1 19 SME 19 35 35 SME SME D . n D 1 20 VAL 20 36 36 VAL VAL D . n D 1 21 GLY 21 37 37 GLY GLY D . n D 1 22 GLY 22 38 38 GLY GLY D . n D 1 23 VAL 23 39 39 VAL VAL D . n D 1 24 VAL 24 40 40 VAL VAL D . n D 1 25 ILE 25 41 41 ILE ILE D . n D 1 26 ALA 26 42 ? ? ? D . n E 1 1 LEU 1 17 17 LEU LEU E . n E 1 2 VAL 2 18 18 VAL VAL E . n E 1 3 PHE 3 19 19 PHE PHE E . n E 1 4 PHE 4 20 20 PHE PHE E . n E 1 5 ALA 5 21 21 ALA ALA E . n E 1 6 GLU 6 22 22 GLU GLU E . n E 1 7 ASP 7 23 23 ASP ASP E . n E 1 8 VAL 8 24 24 VAL VAL E . n E 1 9 GLY 9 25 25 GLY GLY E . n E 1 10 SER 10 26 26 SER SER E . n E 1 11 ASN 11 27 27 ASN ASN E . n E 1 12 LYS 12 28 28 LYS LYS E . n E 1 13 GLY 13 29 29 GLY GLY E . n E 1 14 ALA 14 30 30 ALA ALA E . n E 1 15 ILE 15 31 31 ILE ILE E . n E 1 16 ILE 16 32 32 ILE ILE E . n E 1 17 GLY 17 33 33 GLY GLY E . n E 1 18 LEU 18 34 34 LEU LEU E . n E 1 19 SME 19 35 35 SME SME E . n E 1 20 VAL 20 36 36 VAL VAL E . n E 1 21 GLY 21 37 37 GLY GLY E . n E 1 22 GLY 22 38 38 GLY GLY E . n E 1 23 VAL 23 39 39 VAL VAL E . n E 1 24 VAL 24 40 40 VAL VAL E . n E 1 25 ILE 25 41 41 ILE ILE E . n E 1 26 ALA 26 42 ? ? ? E . n F 1 1 LEU 1 17 17 LEU LEU F . n F 1 2 VAL 2 18 18 VAL VAL F . n F 1 3 PHE 3 19 19 PHE PHE F . n F 1 4 PHE 4 20 20 PHE PHE F . n F 1 5 ALA 5 21 21 ALA ALA F . n F 1 6 GLU 6 22 22 GLU GLU F . n F 1 7 ASP 7 23 23 ASP ASP F . n F 1 8 VAL 8 24 24 VAL VAL F . n F 1 9 GLY 9 25 25 GLY GLY F . n F 1 10 SER 10 26 26 SER SER F . n F 1 11 ASN 11 27 27 ASN ASN F . n F 1 12 LYS 12 28 28 LYS LYS F . n F 1 13 GLY 13 29 29 GLY GLY F . n F 1 14 ALA 14 30 30 ALA ALA F . n F 1 15 ILE 15 31 31 ILE ILE F . n F 1 16 ILE 16 32 32 ILE ILE F . n F 1 17 GLY 17 33 33 GLY GLY F . n F 1 18 LEU 18 34 34 LEU LEU F . n F 1 19 SME 19 35 35 SME SME F . n F 1 20 VAL 20 36 36 VAL VAL F . n F 1 21 GLY 21 37 37 GLY GLY F . n F 1 22 GLY 22 38 38 GLY GLY F . n F 1 23 VAL 23 39 39 VAL VAL F . n F 1 24 VAL 24 40 40 VAL VAL F . n F 1 25 ILE 25 41 41 ILE ILE F . n F 1 26 ALA 26 42 ? ? ? F . n G 1 1 LEU 1 17 17 LEU LEU G . n G 1 2 VAL 2 18 18 VAL VAL G . n G 1 3 PHE 3 19 19 PHE PHE G . n G 1 4 PHE 4 20 20 PHE PHE G . n G 1 5 ALA 5 21 21 ALA ALA G . n G 1 6 GLU 6 22 22 GLU GLU G . n G 1 7 ASP 7 23 23 ASP ASP G . n G 1 8 VAL 8 24 24 VAL VAL G . n G 1 9 GLY 9 25 25 GLY GLY G . n G 1 10 SER 10 26 26 SER SER G . n G 1 11 ASN 11 27 27 ASN ASN G . n G 1 12 LYS 12 28 28 LYS LYS G . n G 1 13 GLY 13 29 29 GLY GLY G . n G 1 14 ALA 14 30 30 ALA ALA G . n G 1 15 ILE 15 31 31 ILE ILE G . n G 1 16 ILE 16 32 32 ILE ILE G . n G 1 17 GLY 17 33 33 GLY GLY G . n G 1 18 LEU 18 34 34 LEU LEU G . n G 1 19 SME 19 35 35 SME SME G . n G 1 20 VAL 20 36 36 VAL VAL G . n G 1 21 GLY 21 37 37 GLY GLY G . n G 1 22 GLY 22 38 38 GLY GLY G . n G 1 23 VAL 23 39 39 VAL VAL G . n G 1 24 VAL 24 40 40 VAL VAL G . n G 1 25 ILE 25 41 41 ILE ILE G . n G 1 26 ALA 26 42 ? ? ? G . n H 1 1 LEU 1 17 17 LEU LEU H . n H 1 2 VAL 2 18 18 VAL VAL H . n H 1 3 PHE 3 19 19 PHE PHE H . n H 1 4 PHE 4 20 20 PHE PHE H . n H 1 5 ALA 5 21 21 ALA ALA H . n H 1 6 GLU 6 22 22 GLU GLU H . n H 1 7 ASP 7 23 23 ASP ASP H . n H 1 8 VAL 8 24 24 VAL VAL H . n H 1 9 GLY 9 25 25 GLY GLY H . n H 1 10 SER 10 26 26 SER SER H . n H 1 11 ASN 11 27 27 ASN ASN H . n H 1 12 LYS 12 28 28 LYS LYS H . n H 1 13 GLY 13 29 29 GLY GLY H . n H 1 14 ALA 14 30 30 ALA ALA H . n H 1 15 ILE 15 31 31 ILE ILE H . n H 1 16 ILE 16 32 32 ILE ILE H . n H 1 17 GLY 17 33 33 GLY GLY H . n H 1 18 LEU 18 34 34 LEU LEU H . n H 1 19 SME 19 35 35 SME SME H . n H 1 20 VAL 20 36 36 VAL VAL H . n H 1 21 GLY 21 37 37 GLY GLY H . n H 1 22 GLY 22 38 38 GLY GLY H . n H 1 23 VAL 23 39 39 VAL VAL H . n H 1 24 VAL 24 40 40 VAL VAL H . n H 1 25 ILE 25 41 41 ILE ILE H . n H 1 26 ALA 26 42 ? ? ? H . n I 1 1 LEU 1 17 17 LEU LEU I . n I 1 2 VAL 2 18 18 VAL VAL I . n I 1 3 PHE 3 19 19 PHE PHE I . n I 1 4 PHE 4 20 20 PHE PHE I . n I 1 5 ALA 5 21 21 ALA ALA I . n I 1 6 GLU 6 22 22 GLU GLU I . n I 1 7 ASP 7 23 23 ASP ASP I . n I 1 8 VAL 8 24 24 VAL VAL I . n I 1 9 GLY 9 25 25 GLY GLY I . n I 1 10 SER 10 26 26 SER SER I . n I 1 11 ASN 11 27 27 ASN ASN I . n I 1 12 LYS 12 28 28 LYS LYS I . n I 1 13 GLY 13 29 29 GLY GLY I . n I 1 14 ALA 14 30 30 ALA ALA I . n I 1 15 ILE 15 31 31 ILE ILE I . n I 1 16 ILE 16 32 32 ILE ILE I . n I 1 17 GLY 17 33 33 GLY GLY I . n I 1 18 LEU 18 34 34 LEU LEU I . n I 1 19 SME 19 35 35 SME SME I . n I 1 20 VAL 20 36 36 VAL VAL I . n I 1 21 GLY 21 37 37 GLY GLY I . n I 1 22 GLY 22 38 38 GLY GLY I . n I 1 23 VAL 23 39 39 VAL VAL I . n I 1 24 VAL 24 40 40 VAL VAL I . n I 1 25 ILE 25 41 41 ILE ILE I . n I 1 26 ALA 26 42 ? ? ? I . n J 1 1 LEU 1 17 17 LEU LEU J . n J 1 2 VAL 2 18 18 VAL VAL J . n J 1 3 PHE 3 19 19 PHE PHE J . n J 1 4 PHE 4 20 20 PHE PHE J . n J 1 5 ALA 5 21 21 ALA ALA J . n J 1 6 GLU 6 22 22 GLU GLU J . n J 1 7 ASP 7 23 23 ASP ASP J . n J 1 8 VAL 8 24 24 VAL VAL J . n J 1 9 GLY 9 25 25 GLY GLY J . n J 1 10 SER 10 26 26 SER SER J . n J 1 11 ASN 11 27 27 ASN ASN J . n J 1 12 LYS 12 28 28 LYS LYS J . n J 1 13 GLY 13 29 29 GLY GLY J . n J 1 14 ALA 14 30 30 ALA ALA J . n J 1 15 ILE 15 31 31 ILE ILE J . n J 1 16 ILE 16 32 32 ILE ILE J . n J 1 17 GLY 17 33 33 GLY GLY J . n J 1 18 LEU 18 34 34 LEU LEU J . n J 1 19 SME 19 35 35 SME SME J . n J 1 20 VAL 20 36 36 VAL VAL J . n J 1 21 GLY 21 37 37 GLY GLY J . n J 1 22 GLY 22 38 38 GLY GLY J . n J 1 23 VAL 23 39 39 VAL VAL J . n J 1 24 VAL 24 40 40 VAL VAL J . n J 1 25 ILE 25 41 41 ILE ILE J . n J 1 26 ALA 26 42 ? ? ? J . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9ONC _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9ONC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9ONC _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9ONC _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 9ONC _struct.title 'A-beta42-Met-R-SO amyloidal fibril - class3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9ONC _struct_keywords.text 'Oxidized, Abeta filaments, Methionine Sulfoxide, Helical reconstruction, Stereo-specific, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LVFFAEDVGSNKGAIIGLMVGGVVIA _struct_ref.pdbx_align_begin 688 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9ONC A 1 ? 26 ? P05067 688 ? 713 ? 17 42 2 1 9ONC B 1 ? 26 ? P05067 688 ? 713 ? 17 42 3 1 9ONC C 1 ? 26 ? P05067 688 ? 713 ? 17 42 4 1 9ONC D 1 ? 26 ? P05067 688 ? 713 ? 17 42 5 1 9ONC E 1 ? 26 ? P05067 688 ? 713 ? 17 42 6 1 9ONC F 1 ? 26 ? P05067 688 ? 713 ? 17 42 7 1 9ONC G 1 ? 26 ? P05067 688 ? 713 ? 17 42 8 1 9ONC H 1 ? 26 ? P05067 688 ? 713 ? 17 42 9 1 9ONC I 1 ? 26 ? P05067 688 ? 713 ? 17 42 10 1 9ONC J 1 ? 26 ? P05067 688 ? 713 ? 17 42 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 18 C ? ? ? 1_555 A SME 19 N ? ? A LEU 34 A SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A SME 19 C ? ? ? 1_555 A VAL 20 N ? ? A SME 35 A VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? B LEU 18 C ? ? ? 1_555 B SME 19 N ? ? B LEU 34 B SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? B SME 19 C ? ? ? 1_555 B VAL 20 N ? ? B SME 35 B VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? C LEU 18 C ? ? ? 1_555 C SME 19 N ? ? C LEU 34 C SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? C SME 19 C ? ? ? 1_555 C VAL 20 N ? ? C SME 35 C VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? D LEU 18 C ? ? ? 1_555 D SME 19 N ? ? D LEU 34 D SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? D SME 19 C ? ? ? 1_555 D VAL 20 N ? ? D SME 35 D VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? E LEU 18 C ? ? ? 1_555 E SME 19 N ? ? E LEU 34 E SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? E SME 19 C ? ? ? 1_555 E VAL 20 N ? ? E SME 35 E VAL 36 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? F LEU 18 C ? ? ? 1_555 F SME 19 N ? ? F LEU 34 F SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? F SME 19 C ? ? ? 1_555 F VAL 20 N ? ? F SME 35 F VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? G LEU 18 C ? ? ? 1_555 G SME 19 N ? ? G LEU 34 G SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? G SME 19 C ? ? ? 1_555 G VAL 20 N ? ? G SME 35 G VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? H LEU 18 C ? ? ? 1_555 H SME 19 N ? ? H LEU 34 H SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale16 covale both ? H SME 19 C ? ? ? 1_555 H VAL 20 N ? ? H SME 35 H VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale17 covale both ? I LEU 18 C ? ? ? 1_555 I SME 19 N ? ? I LEU 34 I SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale18 covale both ? I SME 19 C ? ? ? 1_555 I VAL 20 N ? ? I SME 35 I VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale19 covale both ? J LEU 18 C ? ? ? 1_555 J SME 19 N ? ? J LEU 34 J SME 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale20 covale both ? J SME 19 C ? ? ? 1_555 J VAL 20 N ? ? J SME 35 J VAL 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 SME A 19 ? . . . . SME A 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 2 SME B 19 ? . . . . SME B 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 3 SME C 19 ? . . . . SME C 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 4 SME D 19 ? . . . . SME D 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 5 SME E 19 ? . . . . SME E 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 6 SME F 19 ? . . . . SME F 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 7 SME G 19 ? . . . . SME G 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 8 SME H 19 ? . . . . SME H 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 9 SME I 19 ? . . . . SME I 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' 10 SME J 19 ? . . . . SME J 35 ? 1_555 . . . . . . . MET 1 SME Oxidation 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE H 15 ? SME H 19 ? ILE H 31 SME H 35 AA1 2 ILE D 15 ? SME D 19 ? ILE D 31 SME D 35 AA1 3 ILE A 15 ? SME A 19 ? ILE A 31 SME A 35 AA1 4 ILE E 15 ? SME E 19 ? ILE E 31 SME E 35 AA1 5 ILE I 15 ? SME I 19 ? ILE I 31 SME I 35 AA2 1 VAL H 23 ? VAL H 24 ? VAL H 39 VAL H 40 AA2 2 VAL D 23 ? VAL D 24 ? VAL D 39 VAL D 40 AA2 3 VAL A 23 ? VAL A 24 ? VAL A 39 VAL A 40 AA2 4 VAL E 23 ? VAL E 24 ? VAL E 39 VAL E 40 AA2 5 VAL I 23 ? VAL I 24 ? VAL I 39 VAL I 40 AA3 1 ILE G 15 ? SME G 19 ? ILE G 31 SME G 35 AA3 2 ILE C 15 ? SME C 19 ? ILE C 31 SME C 35 AA3 3 ILE B 15 ? SME B 19 ? ILE B 31 SME B 35 AA3 4 ILE F 15 ? SME F 19 ? ILE F 31 SME F 35 AA3 5 ILE J 15 ? SME J 19 ? ILE J 31 SME J 35 AA4 1 VAL G 23 ? VAL G 24 ? VAL G 39 VAL G 40 AA4 2 VAL C 23 ? VAL C 24 ? VAL C 39 VAL C 40 AA4 3 VAL B 23 ? VAL B 24 ? VAL B 39 VAL B 40 AA4 4 VAL F 23 ? VAL F 24 ? VAL F 39 VAL F 40 AA4 5 VAL J 23 ? VAL J 24 ? VAL J 39 VAL J 40 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLY H 17 ? O GLY H 33 N ILE D 16 ? N ILE D 32 AA1 2 3 O GLY D 17 ? O GLY D 33 N ILE A 16 ? N ILE A 32 AA1 3 4 N GLY A 17 ? N GLY A 33 O ILE E 16 ? O ILE E 32 AA1 4 5 N GLY E 17 ? N GLY E 33 O ILE I 16 ? O ILE I 32 AA2 1 2 O VAL H 24 ? O VAL H 40 N VAL D 23 ? N VAL D 39 AA2 2 3 O VAL D 24 ? O VAL D 40 N VAL A 23 ? N VAL A 39 AA2 3 4 N VAL A 24 ? N VAL A 40 O VAL E 23 ? O VAL E 39 AA2 4 5 N VAL E 24 ? N VAL E 40 O VAL I 23 ? O VAL I 39 AA3 1 2 O ILE G 16 ? O ILE G 32 N GLY C 17 ? N GLY C 33 AA3 2 3 O ILE C 16 ? O ILE C 32 N GLY B 17 ? N GLY B 33 AA3 3 4 N ILE B 16 ? N ILE B 32 O GLY F 17 ? O GLY F 33 AA3 4 5 N ILE F 16 ? N ILE F 32 O GLY J 17 ? O GLY J 33 AA4 1 2 O VAL G 23 ? O VAL G 39 N VAL C 24 ? N VAL C 40 AA4 2 3 O VAL C 23 ? O VAL C 39 N VAL B 24 ? N VAL B 40 AA4 3 4 N VAL B 23 ? N VAL B 39 O VAL F 24 ? O VAL F 40 AA4 4 5 N VAL F 23 ? N VAL F 39 O VAL J 24 ? O VAL J 40 # _pdbx_entry_details.entry_id 9ONC _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A LEU 17 ? ? C A LEU 17 ? ? N A VAL 18 ? ? 104.09 122.70 -18.61 1.60 Y 2 1 O B LEU 17 ? ? C B LEU 17 ? ? N B VAL 18 ? ? 104.07 122.70 -18.63 1.60 Y 3 1 O C LEU 17 ? ? C C LEU 17 ? ? N C VAL 18 ? ? 104.07 122.70 -18.63 1.60 Y 4 1 O D LEU 17 ? ? C D LEU 17 ? ? N D VAL 18 ? ? 104.10 122.70 -18.60 1.60 Y 5 1 O E LEU 17 ? ? C E LEU 17 ? ? N E VAL 18 ? ? 104.05 122.70 -18.65 1.60 Y 6 1 O F LEU 17 ? ? C F LEU 17 ? ? N F VAL 18 ? ? 104.07 122.70 -18.63 1.60 Y 7 1 O G LEU 17 ? ? C G LEU 17 ? ? N G VAL 18 ? ? 104.09 122.70 -18.61 1.60 Y 8 1 O H LEU 17 ? ? C H LEU 17 ? ? N H VAL 18 ? ? 104.09 122.70 -18.61 1.60 Y 9 1 O I LEU 17 ? ? C I LEU 17 ? ? N I VAL 18 ? ? 104.07 122.70 -18.63 1.60 Y 10 1 O J LEU 17 ? ? C J LEU 17 ? ? N J VAL 18 ? ? 104.09 122.70 -18.61 1.60 Y # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 LEU A 17 ? ? -31.30 2 1 LEU B 17 ? ? -31.32 3 1 LEU C 17 ? ? -31.31 4 1 LEU D 17 ? ? -31.32 5 1 LEU E 17 ? ? -31.31 6 1 LEU F 17 ? ? -31.35 7 1 LEU G 17 ? ? -31.28 8 1 LEU H 17 ? ? -31.28 9 1 LEU I 17 ? ? -31.29 10 1 LEU J 17 ? ? -31.29 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A SME 19 A SME 35 ? MET 'modified residue' 2 B SME 19 B SME 35 ? MET 'modified residue' 3 C SME 19 C SME 35 ? MET 'modified residue' 4 D SME 19 D SME 35 ? MET 'modified residue' 5 E SME 19 E SME 35 ? MET 'modified residue' 6 F SME 19 F SME 35 ? MET 'modified residue' 7 G SME 19 G SME 35 ? MET 'modified residue' 8 H SME 19 H SME 35 ? MET 'modified residue' 9 I SME 19 I SME 35 ? MET 'modified residue' 10 J SME 19 J SME 35 ? MET 'modified residue' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9ONC _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 9OBK _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id A _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 9OBK _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9ONC _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.64 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 22212 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Abeta-42-Met35-(R)-SO - class3' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9ONC _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 135000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9ONC _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9ONC _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 42 ? A ALA 26 2 1 Y 1 B ALA 42 ? B ALA 26 3 1 Y 1 C ALA 42 ? C ALA 26 4 1 Y 1 D ALA 42 ? D ALA 26 5 1 Y 1 E ALA 42 ? E ALA 26 6 1 Y 1 F ALA 42 ? F ALA 26 7 1 Y 1 G ALA 42 ? G ALA 26 8 1 Y 1 H ALA 42 ? H ALA 26 9 1 Y 1 I ALA 42 ? I ALA 26 10 1 Y 1 J ALA 42 ? J ALA 26 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLU N N N N 47 GLU CA C N S 48 GLU C C N N 49 GLU O O N N 50 GLU CB C N N 51 GLU CG C N N 52 GLU CD C N N 53 GLU OE1 O N N 54 GLU OE2 O N N 55 GLU OXT O N N 56 GLU H H N N 57 GLU H2 H N N 58 GLU HA H N N 59 GLU HB2 H N N 60 GLU HB3 H N N 61 GLU HG2 H N N 62 GLU HG3 H N N 63 GLU HE2 H N N 64 GLU HXT H N N 65 GLY N N N N 66 GLY CA C N N 67 GLY C C N N 68 GLY O O N N 69 GLY OXT O N N 70 GLY H H N N 71 GLY H2 H N N 72 GLY HA2 H N N 73 GLY HA3 H N N 74 GLY HXT H N N 75 ILE N N N N 76 ILE CA C N S 77 ILE C C N N 78 ILE O O N N 79 ILE CB C N S 80 ILE CG1 C N N 81 ILE CG2 C N N 82 ILE CD1 C N N 83 ILE OXT O N N 84 ILE H H N N 85 ILE H2 H N N 86 ILE HA H N N 87 ILE HB H N N 88 ILE HG12 H N N 89 ILE HG13 H N N 90 ILE HG21 H N N 91 ILE HG22 H N N 92 ILE HG23 H N N 93 ILE HD11 H N N 94 ILE HD12 H N N 95 ILE HD13 H N N 96 ILE HXT H N N 97 LEU N N N N 98 LEU CA C N S 99 LEU C C N N 100 LEU O O N N 101 LEU CB C N N 102 LEU CG C N N 103 LEU CD1 C N N 104 LEU CD2 C N N 105 LEU OXT O N N 106 LEU H H N N 107 LEU H2 H N N 108 LEU HA H N N 109 LEU HB2 H N N 110 LEU HB3 H N N 111 LEU HG H N N 112 LEU HD11 H N N 113 LEU HD12 H N N 114 LEU HD13 H N N 115 LEU HD21 H N N 116 LEU HD22 H N N 117 LEU HD23 H N N 118 LEU HXT H N N 119 LYS N N N N 120 LYS CA C N S 121 LYS C C N N 122 LYS O O N N 123 LYS CB C N N 124 LYS CG C N N 125 LYS CD C N N 126 LYS CE C N N 127 LYS NZ N N N 128 LYS OXT O N N 129 LYS H H N N 130 LYS H2 H N N 131 LYS HA H N N 132 LYS HB2 H N N 133 LYS HB3 H N N 134 LYS HG2 H N N 135 LYS HG3 H N N 136 LYS HD2 H N N 137 LYS HD3 H N N 138 LYS HE2 H N N 139 LYS HE3 H N N 140 LYS HZ1 H N N 141 LYS HZ2 H N N 142 LYS HZ3 H N N 143 LYS HXT H N N 144 PHE N N N N 145 PHE CA C N S 146 PHE C C N N 147 PHE O O N N 148 PHE CB C N N 149 PHE CG C Y N 150 PHE CD1 C Y N 151 PHE CD2 C Y N 152 PHE CE1 C Y N 153 PHE CE2 C Y N 154 PHE CZ C Y N 155 PHE OXT O N N 156 PHE H H N N 157 PHE H2 H N N 158 PHE HA H N N 159 PHE HB2 H N N 160 PHE HB3 H N N 161 PHE HD1 H N N 162 PHE HD2 H N N 163 PHE HE1 H N N 164 PHE HE2 H N N 165 PHE HZ H N N 166 PHE HXT H N N 167 SER N N N N 168 SER CA C N S 169 SER C C N N 170 SER O O N N 171 SER CB C N N 172 SER OG O N N 173 SER OXT O N N 174 SER H H N N 175 SER H2 H N N 176 SER HA H N N 177 SER HB2 H N N 178 SER HB3 H N N 179 SER HG H N N 180 SER HXT H N N 181 SME N N N N 182 SME CA C N S 183 SME CB C N N 184 SME CG C N N 185 SME S S N R 186 SME OE O N N 187 SME CE C N N 188 SME C C N N 189 SME O O N N 190 SME OXT O N N 191 SME H H N N 192 SME H2 H N N 193 SME HA H N N 194 SME HB2 H N N 195 SME HB3 H N N 196 SME HG2 H N N 197 SME HG3 H N N 198 SME HE1 H N N 199 SME HE2 H N N 200 SME HE3 H N N 201 SME HXT H N N 202 VAL N N N N 203 VAL CA C N S 204 VAL C C N N 205 VAL O O N N 206 VAL CB C N N 207 VAL CG1 C N N 208 VAL CG2 C N N 209 VAL OXT O N N 210 VAL H H N N 211 VAL H2 H N N 212 VAL HA H N N 213 VAL HB H N N 214 VAL HG11 H N N 215 VAL HG12 H N N 216 VAL HG13 H N N 217 VAL HG21 H N N 218 VAL HG22 H N N 219 VAL HG23 H N N 220 VAL HXT H N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLU N CA sing N N 44 GLU N H sing N N 45 GLU N H2 sing N N 46 GLU CA C sing N N 47 GLU CA CB sing N N 48 GLU CA HA sing N N 49 GLU C O doub N N 50 GLU C OXT sing N N 51 GLU CB CG sing N N 52 GLU CB HB2 sing N N 53 GLU CB HB3 sing N N 54 GLU CG CD sing N N 55 GLU CG HG2 sing N N 56 GLU CG HG3 sing N N 57 GLU CD OE1 doub N N 58 GLU CD OE2 sing N N 59 GLU OE2 HE2 sing N N 60 GLU OXT HXT sing N N 61 GLY N CA sing N N 62 GLY N H sing N N 63 GLY N H2 sing N N 64 GLY CA C sing N N 65 GLY CA HA2 sing N N 66 GLY CA HA3 sing N N 67 GLY C O doub N N 68 GLY C OXT sing N N 69 GLY OXT HXT sing N N 70 ILE N CA sing N N 71 ILE N H sing N N 72 ILE N H2 sing N N 73 ILE CA C sing N N 74 ILE CA CB sing N N 75 ILE CA HA sing N N 76 ILE C O doub N N 77 ILE C OXT sing N N 78 ILE CB CG1 sing N N 79 ILE CB CG2 sing N N 80 ILE CB HB sing N N 81 ILE CG1 CD1 sing N N 82 ILE CG1 HG12 sing N N 83 ILE CG1 HG13 sing N N 84 ILE CG2 HG21 sing N N 85 ILE CG2 HG22 sing N N 86 ILE CG2 HG23 sing N N 87 ILE CD1 HD11 sing N N 88 ILE CD1 HD12 sing N N 89 ILE CD1 HD13 sing N N 90 ILE OXT HXT sing N N 91 LEU N CA sing N N 92 LEU N H sing N N 93 LEU N H2 sing N N 94 LEU CA C sing N N 95 LEU CA CB sing N N 96 LEU CA HA sing N N 97 LEU C O doub N N 98 LEU C OXT sing N N 99 LEU CB CG sing N N 100 LEU CB HB2 sing N N 101 LEU CB HB3 sing N N 102 LEU CG CD1 sing N N 103 LEU CG CD2 sing N N 104 LEU CG HG sing N N 105 LEU CD1 HD11 sing N N 106 LEU CD1 HD12 sing N N 107 LEU CD1 HD13 sing N N 108 LEU CD2 HD21 sing N N 109 LEU CD2 HD22 sing N N 110 LEU CD2 HD23 sing N N 111 LEU OXT HXT sing N N 112 LYS N CA sing N N 113 LYS N H sing N N 114 LYS N H2 sing N N 115 LYS CA C sing N N 116 LYS CA CB sing N N 117 LYS CA HA sing N N 118 LYS C O doub N N 119 LYS C OXT sing N N 120 LYS CB CG sing N N 121 LYS CB HB2 sing N N 122 LYS CB HB3 sing N N 123 LYS CG CD sing N N 124 LYS CG HG2 sing N N 125 LYS CG HG3 sing N N 126 LYS CD CE sing N N 127 LYS CD HD2 sing N N 128 LYS CD HD3 sing N N 129 LYS CE NZ sing N N 130 LYS CE HE2 sing N N 131 LYS CE HE3 sing N N 132 LYS NZ HZ1 sing N N 133 LYS NZ HZ2 sing N N 134 LYS NZ HZ3 sing N N 135 LYS OXT HXT sing N N 136 PHE N CA sing N N 137 PHE N H sing N N 138 PHE N H2 sing N N 139 PHE CA C sing N N 140 PHE CA CB sing N N 141 PHE CA HA sing N N 142 PHE C O doub N N 143 PHE C OXT sing N N 144 PHE CB CG sing N N 145 PHE CB HB2 sing N N 146 PHE CB HB3 sing N N 147 PHE CG CD1 doub Y N 148 PHE CG CD2 sing Y N 149 PHE CD1 CE1 sing Y N 150 PHE CD1 HD1 sing N N 151 PHE CD2 CE2 doub Y N 152 PHE CD2 HD2 sing N N 153 PHE CE1 CZ doub Y N 154 PHE CE1 HE1 sing N N 155 PHE CE2 CZ sing Y N 156 PHE CE2 HE2 sing N N 157 PHE CZ HZ sing N N 158 PHE OXT HXT sing N N 159 SER N CA sing N N 160 SER N H sing N N 161 SER N H2 sing N N 162 SER CA C sing N N 163 SER CA CB sing N N 164 SER CA HA sing N N 165 SER C O doub N N 166 SER C OXT sing N N 167 SER CB OG sing N N 168 SER CB HB2 sing N N 169 SER CB HB3 sing N N 170 SER OG HG sing N N 171 SER OXT HXT sing N N 172 SME N CA sing N N 173 SME N H sing N N 174 SME N H2 sing N N 175 SME CA CB sing N N 176 SME CA C sing N N 177 SME CA HA sing N N 178 SME CB CG sing N N 179 SME CB HB2 sing N N 180 SME CB HB3 sing N N 181 SME CG S sing N N 182 SME CG HG2 sing N N 183 SME CG HG3 sing N N 184 SME S OE doub N N 185 SME S CE sing N N 186 SME CE HE1 sing N N 187 SME CE HE2 sing N N 188 SME CE HE3 sing N N 189 SME C O doub N N 190 SME C OXT sing N N 191 SME OXT HXT sing N N 192 VAL N CA sing N N 193 VAL N H sing N N 194 VAL N H2 sing N N 195 VAL CA C sing N N 196 VAL CA CB sing N N 197 VAL CA HA sing N N 198 VAL C O doub N N 199 VAL C OXT sing N N 200 VAL CB CG1 sing N N 201 VAL CB CG2 sing N N 202 VAL CB HB sing N N 203 VAL CG1 HG11 sing N N 204 VAL CG1 HG12 sing N N 205 VAL CG1 HG13 sing N N 206 VAL CG2 HG21 sing N N 207 VAL CG2 HG22 sing N N 208 VAL CG2 HG23 sing N N 209 VAL OXT HXT sing N N 210 # _em_admin.current_status REL _em_admin.deposition_date 2025-05-14 _em_admin.deposition_site RCSB _em_admin.entry_id 9ONC _em_admin.last_update 2026-05-20 _em_admin.map_release_date 2026-05-20 _em_admin.title 'A-beta42-Met-R-SO amyloidal fibril - class3' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit 178.36 _em_helical_entity.axial_rise_per_subunit 2.41 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 36.61 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOCONTINUUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 5080 # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.7 ? 'IMAGE ACQUISITION' ? 2 1 ? 1 SerialEM ? ? MASKING ? 3 1 1 1 ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.7 ? 'LAYERLINE INDEXING' ? 5 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 6 1 1 1 ? ? ? 'MODEL FITTING' ? 7 1 1 ? Coot ? ? OTHER ? 8 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? cryoSPARC 4.7 ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4.7 ? CLASSIFICATION ? 11 1 ? ? ? ? ? RECONSTRUCTION ? 12 1 ? ? cryoSPARC 4.7 ? 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.21.2_5419 ? # _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 5R21AG070888 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9OBK _pdbx_initial_refinement_model.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9ONC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #