HEADER METAL BINDING PROTEIN 15-MAY-25 9ONQ TITLE MN-BOUND B. PSEUDOMALLEI RUBRERYTHRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBRERYTHRIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: BURPS1710B_A0924; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEROXIDASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.R.BUDZISZEWSKI,M.E.SNELL,D.C.F.MONTEIRO,M.L.LYNCH,S.E.J.BOWMAN REVDAT 1 25-JUN-25 9ONQ 0 JRNL AUTH G.R.BUDZISZEWSKI,M.L.LYNCH,M.E.SNELL,D.C.MONTEIRO,S.E.BOWMAN JRNL TITL BURKHOLDERIA PSEUDOMALLEI RUBRERYTHRIN PROMISCUOUSLY BINDS JRNL TITL 2 METALS IN A STRUCTURALLY PRE-FORMED BIMETALLIC BINDING SITE. JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL PMID 40501712 JRNL DOI 10.1101/2025.06.01.657255 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 355444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 17728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2900 - 4.5700 0.99 11348 616 0.1606 0.1787 REMARK 3 2 4.5700 - 3.6200 0.99 11349 573 0.1243 0.1305 REMARK 3 3 3.6200 - 3.1700 0.99 11300 586 0.1400 0.1619 REMARK 3 4 3.1700 - 2.8800 1.00 11436 568 0.1453 0.1687 REMARK 3 5 2.8800 - 2.6700 1.00 11346 636 0.1351 0.1649 REMARK 3 6 2.6700 - 2.5100 1.00 11472 557 0.1376 0.1636 REMARK 3 7 2.5100 - 2.3900 1.00 11337 594 0.1500 0.1890 REMARK 3 8 2.3900 - 2.2800 0.98 11279 541 0.1509 0.1746 REMARK 3 9 2.2800 - 2.2000 0.99 11398 572 0.1438 0.1797 REMARK 3 10 2.2000 - 2.1200 1.00 11295 629 0.1515 0.1685 REMARK 3 11 2.1200 - 2.0500 1.00 11311 641 0.1581 0.1921 REMARK 3 12 2.0500 - 2.0000 0.99 11353 604 0.1868 0.2122 REMARK 3 13 1.9900 - 1.9400 0.99 11351 647 0.2011 0.2193 REMARK 3 14 1.9400 - 1.9000 1.00 11340 613 0.1983 0.2440 REMARK 3 15 1.9000 - 1.8500 0.99 11380 511 0.2207 0.2477 REMARK 3 16 1.8500 - 1.8100 0.99 11248 597 0.2380 0.2518 REMARK 3 17 1.8100 - 1.7800 0.98 11281 554 0.2480 0.2756 REMARK 3 18 1.7800 - 1.7400 0.99 11471 477 0.2531 0.2625 REMARK 3 19 1.7400 - 1.7100 0.99 11389 570 0.2643 0.2699 REMARK 3 20 1.7100 - 1.6800 0.99 11219 640 0.2811 0.3176 REMARK 3 21 1.6800 - 1.6600 0.99 11287 635 0.2933 0.3069 REMARK 3 22 1.6600 - 1.6300 0.99 11334 651 0.3053 0.3035 REMARK 3 23 1.6300 - 1.6100 0.99 11240 663 0.3134 0.3356 REMARK 3 24 1.6100 - 1.5800 0.99 11366 564 0.3278 0.3345 REMARK 3 25 1.5800 - 1.5600 0.96 11029 598 0.3573 0.3694 REMARK 3 26 1.5600 - 1.5400 0.97 11075 578 0.3660 0.3950 REMARK 3 27 1.5400 - 1.5200 0.96 10820 652 0.3706 0.3907 REMARK 3 28 1.5200 - 1.5000 0.96 10975 558 0.3733 0.3595 REMARK 3 29 1.5000 - 1.4900 0.96 10986 564 0.3813 0.3904 REMARK 3 30 1.4900 - 1.4700 0.93 10701 539 0.3901 0.3924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.233 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.548 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6600 REMARK 3 ANGLE : 0.891 8910 REMARK 3 CHIRALITY : 0.065 918 REMARK 3 PLANARITY : 0.012 1206 REMARK 3 DIHEDRAL : 16.645 2376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ONQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1000295744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979460 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 355444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 38.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.1 M LI2SO4, 23% REMARK 280 W/V PEG 20K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 101.31750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.49569 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.07233 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 101.31750 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 58.49569 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.07233 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 101.31750 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 58.49569 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.07233 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 116.99137 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 46.14467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 116.99137 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.14467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 116.99137 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.14467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 MET E 1 REMARK 465 MET F 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 301 O HOH A 310 1.98 REMARK 500 OE2 GLU A 124 O HOH A 301 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 96 -65.68 -133.00 REMARK 500 ASP B 96 -58.39 -122.45 REMARK 500 PHE B 110 78.13 -105.03 REMARK 500 ASP C 96 -66.54 -129.22 REMARK 500 PHE C 110 79.74 -103.30 REMARK 500 ASP E 96 -58.64 -121.72 REMARK 500 ASP F 96 -53.84 -121.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 442 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE1 REMARK 620 2 GLU A 53 OE1 97.2 REMARK 620 3 HIS A 56 ND1 108.1 99.8 REMARK 620 4 GLU B 124 OE2 125.5 121.5 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE2 REMARK 620 2 GLU B 90 OE2 101.6 REMARK 620 3 GLU B 124 OE1 123.2 95.7 REMARK 620 4 HIS B 127 ND1 119.9 112.4 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE2 REMARK 620 2 GLU A 124 OE1 98.4 REMARK 620 3 HIS A 127 ND1 113.4 102.7 REMARK 620 4 GLU B 53 OE2 100.2 123.8 116.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 OE2 REMARK 620 2 HOH A 301 O 57.7 REMARK 620 3 GLU B 20 OE1 119.6 72.1 REMARK 620 4 GLU B 53 OE1 118.3 102.5 102.6 REMARK 620 5 HIS B 56 ND1 98.8 151.3 113.2 103.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 20 OE1 REMARK 620 2 GLU C 53 OE1 98.0 REMARK 620 3 HIS C 56 ND1 107.7 102.9 REMARK 620 4 GLU D 124 OE2 122.0 120.8 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 53 OE2 REMARK 620 2 GLU D 90 OE2 97.2 REMARK 620 3 GLU D 124 OE1 127.9 101.7 REMARK 620 4 HIS D 127 ND1 114.3 109.1 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 90 OE2 REMARK 620 2 GLU C 124 OE1 93.7 REMARK 620 3 HIS C 127 ND1 113.9 108.1 REMARK 620 4 GLU D 53 OE2 95.7 120.7 120.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 124 OE2 REMARK 620 2 GLU D 20 OE1 117.1 REMARK 620 3 GLU D 53 OE1 114.9 100.5 REMARK 620 4 HIS D 56 ND1 107.0 111.9 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 20 OE1 REMARK 620 2 GLU E 53 OE1 95.6 REMARK 620 3 HIS E 56 ND1 106.4 101.7 REMARK 620 4 GLU F 124 OE2 126.4 120.1 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 53 OE2 REMARK 620 2 GLU F 90 OE2 105.6 REMARK 620 3 GLU F 124 OE1 124.7 99.9 REMARK 620 4 HIS F 127 ND1 114.1 112.4 99.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 90 OE2 REMARK 620 2 GLU E 124 OE1 97.9 REMARK 620 3 HIS E 127 ND1 113.3 101.1 REMARK 620 4 GLU F 53 OE2 100.0 125.5 117.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 124 OE2 REMARK 620 2 GLU F 20 OE1 116.9 REMARK 620 3 GLU F 53 OE1 120.6 99.9 REMARK 620 4 HIS F 56 ND1 105.6 109.3 103.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8FUH RELATED DB: PDB REMARK 900 RELATED ID: 8FXD RELATED DB: PDB REMARK 900 RELATED ID: 8FVV RELATED DB: PDB REMARK 900 RELATED ID: 9ONM RELATED DB: PDB REMARK 900 RELATED ID: 9ONN RELATED DB: PDB REMARK 900 RELATED ID: 9ONO RELATED DB: PDB REMARK 900 RELATED ID: 9ONR RELATED DB: PDB DBREF 9ONQ A 1 140 UNP Q3JK21 Q3JK21_BURP1 1 140 DBREF 9ONQ B 1 140 UNP Q3JK21 Q3JK21_BURP1 1 140 DBREF 9ONQ C 1 140 UNP Q3JK21 Q3JK21_BURP1 1 140 DBREF 9ONQ D 1 140 UNP Q3JK21 Q3JK21_BURP1 1 140 DBREF 9ONQ E 1 140 UNP Q3JK21 Q3JK21_BURP1 1 140 DBREF 9ONQ F 1 140 UNP Q3JK21 Q3JK21_BURP1 1 140 SEQRES 1 A 140 MET ALA GLN LEU LYS GLY SER LYS THR GLU GLU ASN LEU SEQRES 2 A 140 LYS TYR ALA PHE ALA GLY GLU SER GLN ALA ASN ARG ARG SEQRES 3 A 140 TYR LEU TYR PHE ALA SER LYS ALA ASP VAL GLU GLY GLN SEQRES 4 A 140 ASN ASP ILE ALA ALA LEU PHE ARG SER THR ALA GLU GLY SEQRES 5 A 140 GLU THR GLY HIS ALA HIS GLY HIS LEU GLU TYR LEU GLU SEQRES 6 A 140 ALA VAL GLY ASP PRO ALA THR GLY LEU PRO PHE GLY THR SEQRES 7 A 140 SER ARG GLN ASN LEU GLN SER ALA ILE ALA GLY GLU THR SEQRES 8 A 140 HIS GLU TYR THR ASP MET TYR PRO GLY MET ALA LYS THR SEQRES 9 A 140 ALA ARG ASP GLU GLY PHE GLU GLU ILE ALA ASN TRP PHE SEQRES 10 A 140 GLU THR LEU ALA LYS ALA GLU ARG SER HIS ALA ASN ARG SEQRES 11 A 140 TYR THR LYS ALA LEU ASP GLY LEU VAL ASP SEQRES 1 B 140 MET ALA GLN LEU LYS GLY SER LYS THR GLU GLU ASN LEU SEQRES 2 B 140 LYS TYR ALA PHE ALA GLY GLU SER GLN ALA ASN ARG ARG SEQRES 3 B 140 TYR LEU TYR PHE ALA SER LYS ALA ASP VAL GLU GLY GLN SEQRES 4 B 140 ASN ASP ILE ALA ALA LEU PHE ARG SER THR ALA GLU GLY SEQRES 5 B 140 GLU THR GLY HIS ALA HIS GLY HIS LEU GLU TYR LEU GLU SEQRES 6 B 140 ALA VAL GLY ASP PRO ALA THR GLY LEU PRO PHE GLY THR SEQRES 7 B 140 SER ARG GLN ASN LEU GLN SER ALA ILE ALA GLY GLU THR SEQRES 8 B 140 HIS GLU TYR THR ASP MET TYR PRO GLY MET ALA LYS THR SEQRES 9 B 140 ALA ARG ASP GLU GLY PHE GLU GLU ILE ALA ASN TRP PHE SEQRES 10 B 140 GLU THR LEU ALA LYS ALA GLU ARG SER HIS ALA ASN ARG SEQRES 11 B 140 TYR THR LYS ALA LEU ASP GLY LEU VAL ASP SEQRES 1 C 140 MET ALA GLN LEU LYS GLY SER LYS THR GLU GLU ASN LEU SEQRES 2 C 140 LYS TYR ALA PHE ALA GLY GLU SER GLN ALA ASN ARG ARG SEQRES 3 C 140 TYR LEU TYR PHE ALA SER LYS ALA ASP VAL GLU GLY GLN SEQRES 4 C 140 ASN ASP ILE ALA ALA LEU PHE ARG SER THR ALA GLU GLY SEQRES 5 C 140 GLU THR GLY HIS ALA HIS GLY HIS LEU GLU TYR LEU GLU SEQRES 6 C 140 ALA VAL GLY ASP PRO ALA THR GLY LEU PRO PHE GLY THR SEQRES 7 C 140 SER ARG GLN ASN LEU GLN SER ALA ILE ALA GLY GLU THR SEQRES 8 C 140 HIS GLU TYR THR ASP MET TYR PRO GLY MET ALA LYS THR SEQRES 9 C 140 ALA ARG ASP GLU GLY PHE GLU GLU ILE ALA ASN TRP PHE SEQRES 10 C 140 GLU THR LEU ALA LYS ALA GLU ARG SER HIS ALA ASN ARG SEQRES 11 C 140 TYR THR LYS ALA LEU ASP GLY LEU VAL ASP SEQRES 1 D 140 MET ALA GLN LEU LYS GLY SER LYS THR GLU GLU ASN LEU SEQRES 2 D 140 LYS TYR ALA PHE ALA GLY GLU SER GLN ALA ASN ARG ARG SEQRES 3 D 140 TYR LEU TYR PHE ALA SER LYS ALA ASP VAL GLU GLY GLN SEQRES 4 D 140 ASN ASP ILE ALA ALA LEU PHE ARG SER THR ALA GLU GLY SEQRES 5 D 140 GLU THR GLY HIS ALA HIS GLY HIS LEU GLU TYR LEU GLU SEQRES 6 D 140 ALA VAL GLY ASP PRO ALA THR GLY LEU PRO PHE GLY THR SEQRES 7 D 140 SER ARG GLN ASN LEU GLN SER ALA ILE ALA GLY GLU THR SEQRES 8 D 140 HIS GLU TYR THR ASP MET TYR PRO GLY MET ALA LYS THR SEQRES 9 D 140 ALA ARG ASP GLU GLY PHE GLU GLU ILE ALA ASN TRP PHE SEQRES 10 D 140 GLU THR LEU ALA LYS ALA GLU ARG SER HIS ALA ASN ARG SEQRES 11 D 140 TYR THR LYS ALA LEU ASP GLY LEU VAL ASP SEQRES 1 E 140 MET ALA GLN LEU LYS GLY SER LYS THR GLU GLU ASN LEU SEQRES 2 E 140 LYS TYR ALA PHE ALA GLY GLU SER GLN ALA ASN ARG ARG SEQRES 3 E 140 TYR LEU TYR PHE ALA SER LYS ALA ASP VAL GLU GLY GLN SEQRES 4 E 140 ASN ASP ILE ALA ALA LEU PHE ARG SER THR ALA GLU GLY SEQRES 5 E 140 GLU THR GLY HIS ALA HIS GLY HIS LEU GLU TYR LEU GLU SEQRES 6 E 140 ALA VAL GLY ASP PRO ALA THR GLY LEU PRO PHE GLY THR SEQRES 7 E 140 SER ARG GLN ASN LEU GLN SER ALA ILE ALA GLY GLU THR SEQRES 8 E 140 HIS GLU TYR THR ASP MET TYR PRO GLY MET ALA LYS THR SEQRES 9 E 140 ALA ARG ASP GLU GLY PHE GLU GLU ILE ALA ASN TRP PHE SEQRES 10 E 140 GLU THR LEU ALA LYS ALA GLU ARG SER HIS ALA ASN ARG SEQRES 11 E 140 TYR THR LYS ALA LEU ASP GLY LEU VAL ASP SEQRES 1 F 140 MET ALA GLN LEU LYS GLY SER LYS THR GLU GLU ASN LEU SEQRES 2 F 140 LYS TYR ALA PHE ALA GLY GLU SER GLN ALA ASN ARG ARG SEQRES 3 F 140 TYR LEU TYR PHE ALA SER LYS ALA ASP VAL GLU GLY GLN SEQRES 4 F 140 ASN ASP ILE ALA ALA LEU PHE ARG SER THR ALA GLU GLY SEQRES 5 F 140 GLU THR GLY HIS ALA HIS GLY HIS LEU GLU TYR LEU GLU SEQRES 6 F 140 ALA VAL GLY ASP PRO ALA THR GLY LEU PRO PHE GLY THR SEQRES 7 F 140 SER ARG GLN ASN LEU GLN SER ALA ILE ALA GLY GLU THR SEQRES 8 F 140 HIS GLU TYR THR ASP MET TYR PRO GLY MET ALA LYS THR SEQRES 9 F 140 ALA ARG ASP GLU GLY PHE GLU GLU ILE ALA ASN TRP PHE SEQRES 10 F 140 GLU THR LEU ALA LYS ALA GLU ARG SER HIS ALA ASN ARG SEQRES 11 F 140 TYR THR LYS ALA LEU ASP GLY LEU VAL ASP HET MN A 201 1 HET MN A 202 1 HET MN B 201 1 HET MN B 202 1 HET MN C 201 1 HET MN C 202 1 HET MN D 201 1 HET MN D 202 1 HET MN E 201 1 HET MN E 202 1 HET MN F 201 1 HET MN F 202 1 HETNAM MN MANGANESE (II) ION FORMUL 7 MN 12(MN 2+) FORMUL 19 HOH *876(H2 O) HELIX 1 AA1 SER A 7 GLY A 38 1 32 HELIX 2 AA2 GLN A 39 GLU A 65 1 27 HELIX 3 AA3 THR A 78 ASP A 96 1 19 HELIX 4 AA4 ASP A 96 GLY A 109 1 14 HELIX 5 AA5 PHE A 110 GLY A 137 1 28 HELIX 6 AA6 SER B 7 GLY B 38 1 32 HELIX 7 AA7 GLN B 39 GLU B 65 1 27 HELIX 8 AA8 THR B 78 ASP B 96 1 19 HELIX 9 AA9 ASP B 96 GLY B 109 1 14 HELIX 10 AB1 PHE B 110 LEU B 138 1 29 HELIX 11 AB2 SER C 7 GLY C 38 1 32 HELIX 12 AB3 GLN C 39 GLU C 65 1 27 HELIX 13 AB4 THR C 78 ASP C 96 1 19 HELIX 14 AB5 ASP C 96 GLY C 109 1 14 HELIX 15 AB6 PHE C 110 LEU C 138 1 29 HELIX 16 AB7 SER D 7 GLY D 38 1 32 HELIX 17 AB8 GLN D 39 GLU D 65 1 27 HELIX 18 AB9 THR D 78 ASP D 96 1 19 HELIX 19 AC1 ASP D 96 GLU D 108 1 13 HELIX 20 AC2 PHE D 110 GLY D 137 1 28 HELIX 21 AC3 SER E 7 GLY E 38 1 32 HELIX 22 AC4 GLN E 39 GLU E 65 1 27 HELIX 23 AC5 THR E 78 ASP E 96 1 19 HELIX 24 AC6 ASP E 96 GLY E 109 1 14 HELIX 25 AC7 PHE E 110 LEU E 138 1 29 HELIX 26 AC8 SER F 7 GLY F 38 1 32 HELIX 27 AC9 GLN F 39 GLU F 65 1 27 HELIX 28 AD1 THR F 78 ASP F 96 1 19 HELIX 29 AD2 ASP F 96 GLY F 109 1 14 HELIX 30 AD3 PHE F 110 GLY F 137 1 28 LINK OE1 GLU A 20 MN MN A 201 1555 1555 1.95 LINK OE1 GLU A 53 MN MN A 201 1555 1555 1.98 LINK OE2 GLU A 53 MN MN B 201 1555 1555 1.89 LINK ND1 HIS A 56 MN MN A 201 1555 1555 2.17 LINK OE2 GLU A 90 MN MN A 202 1555 1555 2.02 LINK OE1 GLU A 124 MN MN A 202 1555 1555 1.98 LINK OE2 GLU A 124 MN MN B 202 1555 1555 2.00 LINK ND1 HIS A 127 MN MN A 202 1555 1555 2.10 LINK MN MN A 201 OE2 GLU B 124 1555 1555 1.89 LINK MN MN A 202 OE2 GLU B 53 1555 1555 2.00 LINK O HOH A 301 MN MN B 202 1555 1555 2.25 LINK OE1 GLU B 20 MN MN B 202 1555 1555 1.89 LINK OE1 GLU B 53 MN MN B 202 1555 1555 1.99 LINK ND1 HIS B 56 MN MN B 202 1555 1555 2.12 LINK OE2 GLU B 90 MN MN B 201 1555 1555 2.01 LINK OE1 GLU B 124 MN MN B 201 1555 1555 2.03 LINK ND1 HIS B 127 MN MN B 201 1555 1555 2.09 LINK OE1 GLU C 20 MN MN C 201 1555 1555 2.03 LINK OE1 GLU C 53 MN MN C 201 1555 1555 1.97 LINK OE2 GLU C 53 MN MN D 201 1555 1555 1.99 LINK ND1 HIS C 56 MN MN C 201 1555 1555 2.18 LINK OE2 GLU C 90 MN MN C 202 1555 1555 2.15 LINK OE1 GLU C 124 MN MN C 202 1555 1555 1.96 LINK OE2 GLU C 124 MN MN D 202 1555 1555 1.93 LINK ND1 HIS C 127 MN MN C 202 1555 1555 1.93 LINK MN MN C 201 OE2 GLU D 124 1555 1555 1.90 LINK MN MN C 202 OE2 GLU D 53 1555 1555 2.01 LINK OE1 GLU D 20 MN MN D 202 1555 1555 1.89 LINK OE1 GLU D 53 MN MN D 202 1555 1555 1.97 LINK ND1 HIS D 56 MN MN D 202 1555 1555 2.11 LINK OE2 GLU D 90 MN MN D 201 1555 1555 2.05 LINK OE1 GLU D 124 MN MN D 201 1555 1555 1.89 LINK ND1 HIS D 127 MN MN D 201 1555 1555 2.15 LINK OE1 GLU E 20 MN MN E 201 1555 1555 1.93 LINK OE1 GLU E 53 MN MN E 201 1555 1555 1.94 LINK OE2 GLU E 53 MN MN F 201 1555 1555 1.90 LINK ND1 HIS E 56 MN MN E 201 1555 1555 2.21 LINK OE2 GLU E 90 MN MN E 202 1555 1555 2.00 LINK OE1 GLU E 124 MN MN E 202 1555 1555 1.99 LINK OE2 GLU E 124 MN MN F 202 1555 1555 1.91 LINK ND1 HIS E 127 MN MN E 202 1555 1555 2.08 LINK MN MN E 201 OE2 GLU F 124 1555 1555 1.87 LINK MN MN E 202 OE2 GLU F 53 1555 1555 1.97 LINK OE1 GLU F 20 MN MN F 202 1555 1555 1.95 LINK OE1 GLU F 53 MN MN F 202 1555 1555 1.96 LINK ND1 HIS F 56 MN MN F 202 1555 1555 2.17 LINK OE2 GLU F 90 MN MN F 201 1555 1555 1.92 LINK OE1 GLU F 124 MN MN F 201 1555 1555 2.00 LINK ND1 HIS F 127 MN MN F 201 1555 1555 2.19 CRYST1 202.635 202.635 69.217 90.00 90.00 120.00 H 3 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004935 0.002849 0.000000 0.00000 SCALE2 0.000000 0.005698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014447 0.00000 CONECT 28212511 CONECT 78312511 CONECT 78412513 CONECT 81812511 CONECT 130012512 CONECT 182412512 CONECT 182512514 CONECT 187312512 CONECT 236712514 CONECT 286812514 CONECT 286912512 CONECT 290312514 CONECT 338512513 CONECT 390912513 CONECT 391012511 CONECT 395812513 CONECT 445212515 CONECT 495312515 CONECT 495412517 CONECT 498812515 CONECT 547012516 CONECT 599412516 CONECT 599512518 CONECT 604312516 CONECT 653712518 CONECT 703812518 CONECT 703912516 CONECT 707312518 CONECT 755512517 CONECT 807912517 CONECT 808012515 CONECT 812812517 CONECT 862212519 CONECT 912312519 CONECT 912412521 CONECT 915812519 CONECT 964012520 CONECT1016412520 CONECT1016512522 CONECT1021312520 CONECT1070712522 CONECT1120812522 CONECT1120912520 CONECT1124312522 CONECT1172512521 CONECT1224912521 CONECT1225012519 CONECT1229812521 CONECT12511 282 783 818 3910 CONECT12512 1300 1824 1873 2869 CONECT12513 784 3385 3909 3958 CONECT12514 1825 2367 2868 2903 CONECT1251412523 CONECT12515 4452 4953 4988 8080 CONECT12516 5470 5994 6043 7039 CONECT12517 4954 7555 8079 8128 CONECT12518 5995 6537 7038 7073 CONECT12519 8622 9123 915812250 CONECT12520 9640101641021311209 CONECT12521 9124117251224912298 CONECT1252210165107071120811243 CONECT1252312514 MASTER 463 0 12 30 0 0 0 6 7356 6 62 66 END