HEADER MEMBRANE PROTEIN 29-MAY-25 9OV9 TITLE STRUCTURE OF HTWIK2RM (K2P6.1RM) ION CHANNEL WITHOUT LIPID PLUG IN DDM TITLE 2 DETERGENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTASSIUM CHANNEL SUBFAMILY K MEMBER 6; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: INWARD RECTIFYING POTASSIUM CHANNEL PROTEIN TWIK-2,TWIK- COMPND 5 ORIGINATED SIMILARITY SEQUENCE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KCNK6, TOSS, TWIK2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ION CHANNEL, K2P, TWIK2, TWO PORE CHANNEL, POTASSIUM CHANNEL, KEYWDS 2 MEMBRANE PROTEIN, K2P6.1, LIPID PLUG, TWIK2RM EXPDTA ELECTRON MICROSCOPY AUTHOR A.MONDAL,D.L.MINOR REVDAT 1 27-MAY-26 9OV9 0 JRNL AUTH A.MONDAL,D.MINOR JRNL TITL STRUCTURE OF HTWIK2RM (K2P6.1RM) ION CHANNEL WITHOUT LIPID JRNL TITL 2 PLUG IN DDM DETERGENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 112195 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9OV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1000296475. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN TWIK2RM (K2P6.1RM) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : MUTATION IN ER RETENTION SIGNAL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1100.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4770.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 82 REMARK 465 SER B 83 REMARK 465 ALA B 84 REMARK 465 ASN B 85 REMARK 465 ALA B 86 REMARK 465 SER B 87 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 ASN A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 ASP A 88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 106 17.37 54.79 REMARK 500 LEU B 154 37.57 72.64 REMARK 500 ARG B 166 -61.55 -93.75 REMARK 500 PRO A 52 39.21 -85.50 REMARK 500 ALA A 90 -119.27 53.61 REMARK 500 ILE A 215 -67.53 -106.34 REMARK 500 LEU A 265 -98.91 60.97 REMARK 500 GLU A 267 45.98 -79.81 REMARK 500 ILE A 269 -54.69 -125.50 REMARK 500 PRO A 274 -108.81 0.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 106 O REMARK 620 2 VAL B 107 O 65.7 REMARK 620 3 ILE B 215 O 108.2 63.5 REMARK 620 4 THR A 106 O 99.3 145.6 95.5 REMARK 620 5 VAL A 107 O 157.6 127.3 94.2 78.3 REMARK 620 6 THR A 214 O 64.8 122.4 161.8 70.3 93.9 REMARK 620 7 ILE A 215 O 105.6 88.7 120.1 125.7 60.8 78.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 106 O REMARK 620 2 THR B 214 O 71.6 REMARK 620 3 THR A 106 O 103.3 74.5 REMARK 620 4 THR A 106 OG1 161.5 94.4 60.4 REMARK 620 5 THR A 214 O 77.1 136.4 84.3 107.6 REMARK 620 6 THR A 214 OG1 114.3 172.6 107.3 80.7 50.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-70828 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-70837 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-70885 RELATED DB: EMDB REMARK 900 RELATED ID: 9OTA RELATED DB: PDB REMARK 900 RELATED ID: 9OTK RELATED DB: PDB REMARK 900 RELATED ID: 9OV0 RELATED DB: PDB REMARK 900 RELATED ID: EMD-70894 RELATED DB: EMDB REMARK 900 STRUCTURE OF HTWIK2RM (K2P6.1RM) ION CHANNEL WITHOUT LIPID PLUG IN REMARK 900 DDM DETERGENT DBREF 9OV9 B 4 275 UNP Q9Y257 KCNK6_HUMAN 4 275 DBREF 9OV9 A 4 275 UNP Q9Y257 KCNK6_HUMAN 4 275 SEQRES 1 B 272 GLY ALA LEU LEU ALA GLY ALA LEU ALA ALA TYR ALA ALA SEQRES 2 B 272 TYR LEU VAL LEU GLY ALA LEU LEU VAL ALA ARG LEU GLU SEQRES 3 B 272 GLY PRO HIS GLU ALA ARG LEU ARG ALA GLU LEU GLU THR SEQRES 4 B 272 LEU ARG ALA GLN LEU LEU GLN ARG SER PRO CYS VAL ALA SEQRES 5 B 272 ALA PRO ALA LEU ASP ALA PHE VAL GLU ARG VAL LEU ALA SEQRES 6 B 272 ALA GLY ARG LEU GLY ARG VAL VAL LEU ALA ASN ALA SER SEQRES 7 B 272 GLY SER ALA ASN ALA SER ASP PRO ALA TRP ASP PHE ALA SEQRES 8 B 272 SER ALA LEU PHE PHE ALA SER THR LEU ILE THR THR VAL SEQRES 9 B 272 GLY TYR GLY TYR THR THR PRO LEU THR ASP ALA GLY LYS SEQRES 10 B 272 ALA PHE SER ILE ALA PHE ALA LEU LEU GLY VAL PRO THR SEQRES 11 B 272 THR MET LEU LEU LEU THR ALA SER ALA GLN ARG LEU SER SEQRES 12 B 272 LEU LEU LEU THR HIS VAL PRO LEU SER TRP LEU SER MET SEQRES 13 B 272 ARG TRP GLY TRP ASP PRO ARG ARG ALA ALA CYS TRP HIS SEQRES 14 B 272 LEU VAL ALA LEU LEU GLY VAL VAL VAL THR VAL CYS PHE SEQRES 15 B 272 LEU VAL PRO ALA VAL ILE PHE ALA HIS LEU GLU GLU ALA SEQRES 16 B 272 TRP SER PHE LEU ASP ALA PHE TYR PHE CYS PHE ILE SER SEQRES 17 B 272 LEU SER THR ILE GLY LEU GLY ASP TYR VAL PRO GLY GLU SEQRES 18 B 272 ALA PRO GLY GLN PRO TYR ARG ALA LEU TYR LYS VAL LEU SEQRES 19 B 272 VAL THR VAL TYR LEU PHE LEU GLY LEU VAL ALA MET VAL SEQRES 20 B 272 LEU VAL LEU GLN THR PHE ARG HIS VAL SER ASP LEU HIS SEQRES 21 B 272 GLY LEU THR GLU LEU ILE LEU LEU PRO PRO PRO CYS SEQRES 1 A 272 GLY ALA LEU LEU ALA GLY ALA LEU ALA ALA TYR ALA ALA SEQRES 2 A 272 TYR LEU VAL LEU GLY ALA LEU LEU VAL ALA ARG LEU GLU SEQRES 3 A 272 GLY PRO HIS GLU ALA ARG LEU ARG ALA GLU LEU GLU THR SEQRES 4 A 272 LEU ARG ALA GLN LEU LEU GLN ARG SER PRO CYS VAL ALA SEQRES 5 A 272 ALA PRO ALA LEU ASP ALA PHE VAL GLU ARG VAL LEU ALA SEQRES 6 A 272 ALA GLY ARG LEU GLY ARG VAL VAL LEU ALA ASN ALA SER SEQRES 7 A 272 GLY SER ALA ASN ALA SER ASP PRO ALA TRP ASP PHE ALA SEQRES 8 A 272 SER ALA LEU PHE PHE ALA SER THR LEU ILE THR THR VAL SEQRES 9 A 272 GLY TYR GLY TYR THR THR PRO LEU THR ASP ALA GLY LYS SEQRES 10 A 272 ALA PHE SER ILE ALA PHE ALA LEU LEU GLY VAL PRO THR SEQRES 11 A 272 THR MET LEU LEU LEU THR ALA SER ALA GLN ARG LEU SER SEQRES 12 A 272 LEU LEU LEU THR HIS VAL PRO LEU SER TRP LEU SER MET SEQRES 13 A 272 ARG TRP GLY TRP ASP PRO ARG ARG ALA ALA CYS TRP HIS SEQRES 14 A 272 LEU VAL ALA LEU LEU GLY VAL VAL VAL THR VAL CYS PHE SEQRES 15 A 272 LEU VAL PRO ALA VAL ILE PHE ALA HIS LEU GLU GLU ALA SEQRES 16 A 272 TRP SER PHE LEU ASP ALA PHE TYR PHE CYS PHE ILE SER SEQRES 17 A 272 LEU SER THR ILE GLY LEU GLY ASP TYR VAL PRO GLY GLU SEQRES 18 A 272 ALA PRO GLY GLN PRO TYR ARG ALA LEU TYR LYS VAL LEU SEQRES 19 A 272 VAL THR VAL TYR LEU PHE LEU GLY LEU VAL ALA MET VAL SEQRES 20 A 272 LEU VAL LEU GLN THR PHE ARG HIS VAL SER ASP LEU HIS SEQRES 21 A 272 GLY LEU THR GLU LEU ILE LEU LEU PRO PRO PRO CYS HET K B 301 1 HET K A 301 1 HET K A 302 1 HETNAM K POTASSIUM ION FORMUL 3 K 3(K 1+) HELIX 1 AA1 LEU B 6 SER B 51 1 46 HELIX 2 AA2 ALA B 55 GLY B 70 1 16 HELIX 3 AA3 GLY B 70 ASN B 79 1 10 HELIX 4 AA4 ASP B 92 THR B 105 1 14 HELIX 5 AA5 THR B 116 VAL B 152 1 37 HELIX 6 AA6 ARG B 166 PHE B 185 1 20 HELIX 7 AA7 PHE B 185 GLU B 196 1 12 HELIX 8 AA8 SER B 200 SER B 213 1 14 HELIX 9 AA9 TYR B 230 GLY B 264 1 35 HELIX 10 AB1 GLY B 264 LEU B 270 1 7 HELIX 11 AB2 LEU A 6 SER A 51 1 46 HELIX 12 AB3 ALA A 55 GLY A 70 1 16 HELIX 13 AB4 GLY A 70 ASN A 79 1 10 HELIX 14 AB5 ASP A 92 THR A 105 1 14 HELIX 15 AB6 THR A 116 HIS A 151 1 36 HELIX 16 AB7 PRO A 165 PHE A 185 1 21 HELIX 17 AB8 PHE A 185 GLU A 196 1 12 HELIX 18 AB9 SER A 200 SER A 213 1 14 HELIX 19 AC1 TYR A 230 HIS A 263 1 34 HELIX 20 AC2 GLY A 264 ILE A 269 5 6 SSBOND 1 CYS B 53 CYS A 53 1555 1555 2.03 LINK O THR B 106 K K A 301 1555 1555 3.14 LINK O THR B 106 K K A 302 1555 1555 3.01 LINK O VAL B 107 K K A 301 1555 1555 2.77 LINK O THR B 214 K K A 302 1555 1555 2.67 LINK O ILE B 215 K K A 301 1555 1555 2.66 LINK O THR A 106 K K A 301 1555 1555 2.77 LINK O THR A 106 K K A 302 1555 1555 2.74 LINK OG1 THR A 106 K K A 302 1555 1555 2.97 LINK O VAL A 107 K K A 301 1555 1555 2.63 LINK O THR A 214 K K A 301 1555 1555 3.47 LINK O THR A 214 K K A 302 1555 1555 2.68 LINK OG1 THR A 214 K K A 302 1555 1555 3.41 LINK O ILE A 215 K K A 301 1555 1555 2.76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 370 2399 CONECT 711 4056 4057 CONECT 718 4056 CONECT 1554 4057 CONECT 1561 4056 CONECT 2399 370 CONECT 2736 4056 4057 CONECT 2738 4057 CONECT 2743 4056 CONECT 3579 4056 4057 CONECT 3581 4057 CONECT 3586 4056 CONECT 4056 711 718 1561 2736 CONECT 4056 2743 3579 3586 CONECT 4057 711 1554 2736 2738 CONECT 4057 3579 3581 MASTER 177 0 3 20 0 0 0 6 4055 2 16 42 END