data_9OXP # _entry.id 9OXP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9OXP pdb_00009oxp 10.2210/pdb9oxp/pdb WWPDB D_1000296685 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-01-07 ? 2 'Structure model' 1 1 2026-01-14 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 2 'Structure model' '_citation_author.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9OXP _pdbx_database_status.recvd_initial_deposition_date 2025-06-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email andyn@uic.edu _pdbx_contact_author.name_first Andy _pdbx_contact_author.name_last Nguyen _pdbx_contact_author.name_mi I _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4137-6453 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dang, V.T.' 1 0000-0002-9386-841X 'Nguyen, A.' 2 0000-0003-4137-6453 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1364-548X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'beta-barrels from short macrocyclic peptides.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d5cc06640a _citation.pdbx_database_id_PubMed 41489626 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dang, V.T.' 1 0000-0002-9386-841X primary 'Martynowycz, M.W.' 2 0000-0003-0055-230X primary 'McElheny, D.' 3 ? primary 'Nguyen, A.I.' 4 0000-0003-4137-6453 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'MC4HH3AH10D (ORN)WFHSH(ORN)FI(MHS)(SAR)H peptide macrocycle' 1563.784 2 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 water nat water 18.015 45 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)WFHSH(ORN)FI(MHS)(SAR)H' _entity_poly.pdbx_seq_one_letter_code_can AWFHSHAFIHGH _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 TRP n 1 3 PHE n 1 4 HIS n 1 5 SER n 1 6 HIS n 1 7 ORN n 1 8 PHE n 1 9 ILE n 1 10 MHS n 1 11 SAR n 1 12 HIS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 MHS 'L-peptide linking' n 'N1-METHYLATED HISTIDINE' ? 'C7 H11 N3 O2' 169.181 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 11 11 ORN ORN A . n A 1 2 TRP 2 12 12 TRP TRP A . n A 1 3 PHE 3 1 1 PHE PHE A . n A 1 4 HIS 4 2 2 HIS HIS A . n A 1 5 SER 5 3 3 SER SER A . n A 1 6 HIS 6 4 4 HIS HIS A . n A 1 7 ORN 7 5 5 ORN ORN A . n A 1 8 PHE 8 6 6 PHE PHE A . n A 1 9 ILE 9 7 7 ILE ILE A . n A 1 10 MHS 10 8 8 MHS MHS A . n A 1 11 SAR 11 9 9 SAR SAR A . n A 1 12 HIS 12 10 10 HIS HIS A . n B 1 1 ORN 1 11 11 ORN ORN B . n B 1 2 TRP 2 12 12 TRP TRP B . n B 1 3 PHE 3 13 1 PHE PHE B . n B 1 4 HIS 4 14 2 HIS HIS B . n B 1 5 SER 5 15 3 SER SER B . n B 1 6 HIS 6 16 4 HIS HIS B . n B 1 7 ORN 7 17 5 ORN ORN B . n B 1 8 PHE 8 18 6 PHE PHE B . n B 1 9 ILE 9 19 7 ILE ILE B . n B 1 10 MHS 10 20 8 MHS MHS B . n B 1 11 SAR 11 21 9 SAR SAR B . n B 1 12 HIS 12 22 10 HIS HIS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT 1 101 1 ACT ACT B . D 3 HOH 1 101 17 HOH HOH A . D 3 HOH 2 102 1 HOH HOH A . D 3 HOH 3 103 3 HOH HOH A . D 3 HOH 4 104 9 HOH HOH A . D 3 HOH 5 105 27 HOH HOH A . D 3 HOH 6 106 24 HOH HOH A . D 3 HOH 7 107 4 HOH HOH A . D 3 HOH 8 108 32 HOH HOH A . D 3 HOH 9 109 28 HOH HOH A . D 3 HOH 10 110 8 HOH HOH A . D 3 HOH 11 111 7 HOH HOH A . D 3 HOH 12 112 31 HOH HOH A . D 3 HOH 13 113 25 HOH HOH A . D 3 HOH 14 114 13 HOH HOH A . D 3 HOH 15 115 11 HOH HOH A . D 3 HOH 16 116 15 HOH HOH A . E 3 HOH 1 201 39 HOH HOH B . E 3 HOH 2 202 23 HOH HOH B . E 3 HOH 3 203 2 HOH HOH B . E 3 HOH 4 204 14 HOH HOH B . E 3 HOH 5 205 6 HOH HOH B . E 3 HOH 6 206 26 HOH HOH B . E 3 HOH 7 207 10 HOH HOH B . E 3 HOH 8 208 33 HOH HOH B . E 3 HOH 9 209 5 HOH HOH B . E 3 HOH 10 210 22 HOH HOH B . E 3 HOH 11 211 35 HOH HOH B . E 3 HOH 12 212 16 HOH HOH B . E 3 HOH 13 213 19 HOH HOH B . E 3 HOH 14 214 34 HOH HOH B . E 3 HOH 15 215 12 HOH HOH B . E 3 HOH 16 216 41 HOH HOH B . E 3 HOH 17 217 20 HOH HOH B . E 3 HOH 18 218 36 HOH HOH B . E 3 HOH 19 219 37 HOH HOH B . E 3 HOH 20 220 21 HOH HOH B . E 3 HOH 21 221 44 HOH HOH B . E 3 HOH 22 222 40 HOH HOH B . E 3 HOH 23 223 30 HOH HOH B . E 3 HOH 24 224 45 HOH HOH B . E 3 HOH 25 225 18 HOH HOH B . E 3 HOH 26 226 38 HOH HOH B . E 3 HOH 27 227 29 HOH HOH B . E 3 HOH 28 228 42 HOH HOH B . E 3 HOH 29 229 43 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9OXP _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.342 _cell.length_a_esd ? _cell.length_b 35.115 _cell.length_b_esd ? _cell.length_c 47.233 _cell.length_c_esd ? _cell.volume 48666.254 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9OXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9OXP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 36.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;2.0 M sodium formate 0.1 M BIS-TRIS propane pH 7.0 ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'Nitrogen gas cooled' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-08-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator C111 _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0332 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0332 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 12.83 _reflns.entry_id 9OXP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.2 _reflns.d_resolution_low 28.18 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 101345 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.68 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 45.07 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.02966 _reflns.pdbx_Rpim_I_all 0.008143 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.02847 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.2 _reflns_shell.d_res_low 1.243 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.60 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 5904 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.2 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.3406 _reflns_shell.pdbx_Rpim_I_all 0.1094 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.956 _reflns_shell.pdbx_CC_star 0.989 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 83.96 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.3211 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 18.92 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9OXP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.20 _refine.ls_d_res_low 28.18 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14402 _refine.ls_number_reflns_R_free 1436 _refine.ls_number_reflns_R_work 12966 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.53 _refine.ls_percent_reflns_R_free 9.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1625 _refine.ls_R_factor_R_free 0.1552 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1633 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.0821 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0795 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 28.18 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 273 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 224 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0125 ? 246 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.7152 ? 328 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0988 ? 25 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0044 ? 39 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 15.3141 ? 67 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.20 1.24 . . 121 1083 82.64 . . . . 0.1882 . . . . . . . . . . . . . . . 0.1868 'X-RAY DIFFRACTION' 1.24 1.29 . . 151 1336 99.20 . . . . 0.1683 . . . . . . . . . . . . . . . 0.1971 'X-RAY DIFFRACTION' 1.29 1.35 . . 146 1326 100.00 . . . . 0.1766 . . . . . . . . . . . . . . . 0.1715 'X-RAY DIFFRACTION' 1.35 1.42 . . 149 1336 100.00 . . . . 0.1797 . . . . . . . . . . . . . . . 0.1628 'X-RAY DIFFRACTION' 1.42 1.51 . . 144 1318 100.00 . . . . 0.1578 . . . . . . . . . . . . . . . 0.1508 'X-RAY DIFFRACTION' 1.51 1.63 . . 150 1332 100.00 . . . . 0.1631 . . . . . . . . . . . . . . . 0.1619 'X-RAY DIFFRACTION' 1.63 1.79 . . 148 1313 100.00 . . . . 0.1563 . . . . . . . . . . . . . . . 0.1414 'X-RAY DIFFRACTION' 1.79 2.05 . . 147 1341 100.00 . . . . 0.1587 . . . . . . . . . . . . . . . 0.1675 'X-RAY DIFFRACTION' 2.05 2.58 . . 140 1332 100.00 . . . . 0.1671 . . . . . . . . . . . . . . . 0.1531 'X-RAY DIFFRACTION' 2.59 28.18 . . 140 1249 93.35 . . . . 0.1601 . . . . . . . . . . . . . . . 0.1465 # _struct.entry_id 9OXP _struct.title 'Beta-barrel forming peptide macrocycle' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9OXP _struct_keywords.text 'Macrocycle, Beta-Barrel, Beta-Sheet, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9OXP _struct_ref.pdbx_db_accession 9OXP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9OXP A 1 ? 12 ? 9OXP 11 ? 10 ? 11 10 2 1 9OXP B 1 ? 12 ? 9OXP 11 ? 22 ? 11 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3010 ? 1 MORE -21 ? 1 'SSA (A^2)' 3840 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR relaxation study' _pdbx_struct_assembly_auth_evidence.details 'Dimer in solution and tetramer in solid phase (crystal)' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1.0000000000 0.0000000000 0.0000000000 -29.3420000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 6 C ? ? ? 1_555 A ORN 7 NE ? ? A HIS 4 A ORN 5 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale2 covale both ? A ORN 7 C ? ? ? 1_555 A PHE 8 N ? ? A ORN 5 A PHE 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A ILE 9 C ? ? ? 1_555 A MHS 10 N ? ? A ILE 7 A MHS 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MHS 10 C ? ? ? 1_555 A SAR 11 N ? ? A MHS 8 A SAR 9 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A SAR 11 C ? ? ? 1_555 A HIS 12 N ? ? A SAR 9 A HIS 10 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A HIS 12 C ? ? ? 1_555 A ORN 1 NE ? ? A HIS 10 A ORN 11 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale7 covale both ? A ORN 1 C ? ? ? 1_555 A TRP 2 N ? ? A ORN 11 A TRP 12 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? B ORN 1 C ? ? ? 1_555 B TRP 2 N ? ? B ORN 11 B TRP 12 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? B ORN 1 NE ? ? ? 1_555 B HIS 12 C ? ? B ORN 11 B HIS 22 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale10 covale both ? B HIS 6 C ? ? ? 1_555 B ORN 7 NE ? ? B HIS 16 B ORN 17 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale11 covale both ? B ORN 7 C ? ? ? 1_555 B PHE 8 N ? ? B ORN 17 B PHE 18 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? B ILE 9 C ? ? ? 1_555 B MHS 10 N ? ? B ILE 19 B MHS 20 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? B MHS 10 C ? ? ? 1_555 B SAR 11 N ? ? B MHS 20 B SAR 21 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale both ? B SAR 11 C ? ? ? 1_555 B HIS 12 N ? ? B SAR 21 B HIS 22 1_555 ? ? ? ? ? ? ? 1.323 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ORN A 1 ? . . . . ORN A 11 ? 1_555 . . . . . . . ? 1 ORN Ornithine 'Named protein modification' 2 ORN A 7 ? . . . . ORN A 5 ? 1_555 . . . . . . . ? 1 ORN Ornithine 'Named protein modification' 3 MHS A 10 ? . . . . MHS A 8 ? 1_555 . . . . . . . HIS 1 MHS Methylation 'Named protein modification' 4 SAR A 11 ? . . . . SAR A 9 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 5 ORN B 1 ? . . . . ORN B 11 ? 1_555 . . . . . . . ? 1 ORN Ornithine 'Named protein modification' 6 ORN B 7 ? . . . . ORN B 17 ? 1_555 . . . . . . . ? 1 ORN Ornithine 'Named protein modification' 7 MHS B 10 ? . . . . MHS B 20 ? 1_555 . . . . . . . HIS 1 MHS Methylation 'Named protein modification' 8 SAR B 11 ? . . . . SAR B 21 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 9 HIS A 6 ? ORN A 7 ? HIS A 4 ? 1_555 ORN A 5 ? 1_555 C NE . . . None 'Non-standard linkage' 10 HIS A 12 ? ORN A 1 ? HIS A 10 ? 1_555 ORN A 11 ? 1_555 C NE . . . None 'Non-standard linkage' 11 ORN B 1 ? HIS B 12 ? ORN B 11 ? 1_555 HIS B 22 ? 1_555 NE C . . . None 'Non-standard linkage' 12 HIS B 6 ? ORN B 7 ? HIS B 16 ? 1_555 ORN B 17 ? 1_555 C NE . . . None 'Non-standard linkage' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 9 ? HIS A 12 ? ILE A 7 HIS A 10 AA1 2 TRP A 2 ? SER A 5 ? TRP A 12 SER A 3 AA1 3 TRP B 2 ? HIS B 4 ? TRP B 12 HIS B 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O MHS A 10 ? O MHS A 8 N HIS A 4 ? N HIS A 2 AA1 2 3 N PHE A 3 ? N PHE A 1 O PHE B 3 ? O PHE B 13 # _pdbx_entry_details.entry_id 9OXP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 222 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z 4 -x,-y,z 5 x+1/2,y+1/2,z+1/2 6 x+1/2,-y+1/2,-z+1/2 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 226 ? 6.55 . 2 1 O ? B HOH 227 ? 7.23 . 3 1 O ? B HOH 228 ? 7.52 . 4 1 O ? B HOH 229 ? 8.36 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 HIS N N N N 8 HIS CA C N S 9 HIS C C N N 10 HIS O O N N 11 HIS CB C N N 12 HIS CG C Y N 13 HIS ND1 N Y N 14 HIS CD2 C Y N 15 HIS CE1 C Y N 16 HIS NE2 N Y N 17 HIS OXT O N N 18 HIS H H N N 19 HIS H2 H N N 20 HIS HA H N N 21 HIS HB2 H N N 22 HIS HB3 H N N 23 HIS HD1 H N N 24 HIS HD2 H N N 25 HIS HE1 H N N 26 HIS HE2 H N N 27 HIS HXT H N N 28 HOH O O N N 29 HOH H1 H N N 30 HOH H2 H N N 31 ILE N N N N 32 ILE CA C N S 33 ILE C C N N 34 ILE O O N N 35 ILE CB C N S 36 ILE CG1 C N N 37 ILE CG2 C N N 38 ILE CD1 C N N 39 ILE OXT O N N 40 ILE H H N N 41 ILE H2 H N N 42 ILE HA H N N 43 ILE HB H N N 44 ILE HG12 H N N 45 ILE HG13 H N N 46 ILE HG21 H N N 47 ILE HG22 H N N 48 ILE HG23 H N N 49 ILE HD11 H N N 50 ILE HD12 H N N 51 ILE HD13 H N N 52 ILE HXT H N N 53 MHS N N N N 54 MHS CA C N S 55 MHS C C N N 56 MHS O O N N 57 MHS CB C N N 58 MHS CG C Y N 59 MHS ND1 N Y N 60 MHS CD2 C Y N 61 MHS CE1 C Y N 62 MHS NE2 N Y N 63 MHS CM C N N 64 MHS OXT O N N 65 MHS H H N N 66 MHS H2 H N N 67 MHS HA H N N 68 MHS HB2 H N N 69 MHS HB3 H N N 70 MHS HD2 H N N 71 MHS HE1 H N N 72 MHS HM1 H N N 73 MHS HM2 H N N 74 MHS HM3 H N N 75 MHS HXT H N N 76 ORN N N N N 77 ORN CA C N S 78 ORN CB C N N 79 ORN CG C N N 80 ORN CD C N N 81 ORN NE N N N 82 ORN C C N N 83 ORN O O N N 84 ORN OXT O N N 85 ORN H H N N 86 ORN H2 H N N 87 ORN HA H N N 88 ORN HB2 H N N 89 ORN HB3 H N N 90 ORN HG2 H N N 91 ORN HG3 H N N 92 ORN HD2 H N N 93 ORN HD3 H N N 94 ORN HE1 H N N 95 ORN HE2 H N N 96 ORN HXT H N N 97 PHE N N N N 98 PHE CA C N S 99 PHE C C N N 100 PHE O O N N 101 PHE CB C N N 102 PHE CG C Y N 103 PHE CD1 C Y N 104 PHE CD2 C Y N 105 PHE CE1 C Y N 106 PHE CE2 C Y N 107 PHE CZ C Y N 108 PHE OXT O N N 109 PHE H H N N 110 PHE H2 H N N 111 PHE HA H N N 112 PHE HB2 H N N 113 PHE HB3 H N N 114 PHE HD1 H N N 115 PHE HD2 H N N 116 PHE HE1 H N N 117 PHE HE2 H N N 118 PHE HZ H N N 119 PHE HXT H N N 120 SAR N N N N 121 SAR CA C N N 122 SAR C C N N 123 SAR O O N N 124 SAR CN C N N 125 SAR OXT O N N 126 SAR H H N N 127 SAR HA2 H N N 128 SAR HA3 H N N 129 SAR HN1 H N N 130 SAR HN2 H N N 131 SAR HN3 H N N 132 SAR HXT H N N 133 SER N N N N 134 SER CA C N S 135 SER C C N N 136 SER O O N N 137 SER CB C N N 138 SER OG O N N 139 SER OXT O N N 140 SER H H N N 141 SER H2 H N N 142 SER HA H N N 143 SER HB2 H N N 144 SER HB3 H N N 145 SER HG H N N 146 SER HXT H N N 147 TRP N N N N 148 TRP CA C N S 149 TRP C C N N 150 TRP O O N N 151 TRP CB C N N 152 TRP CG C Y N 153 TRP CD1 C Y N 154 TRP CD2 C Y N 155 TRP NE1 N Y N 156 TRP CE2 C Y N 157 TRP CE3 C Y N 158 TRP CZ2 C Y N 159 TRP CZ3 C Y N 160 TRP CH2 C Y N 161 TRP OXT O N N 162 TRP H H N N 163 TRP H2 H N N 164 TRP HA H N N 165 TRP HB2 H N N 166 TRP HB3 H N N 167 TRP HD1 H N N 168 TRP HE1 H N N 169 TRP HE3 H N N 170 TRP HZ2 H N N 171 TRP HZ3 H N N 172 TRP HH2 H N N 173 TRP HXT H N N 174 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 HIS N CA sing N N 7 HIS N H sing N N 8 HIS N H2 sing N N 9 HIS CA C sing N N 10 HIS CA CB sing N N 11 HIS CA HA sing N N 12 HIS C O doub N N 13 HIS C OXT sing N N 14 HIS CB CG sing N N 15 HIS CB HB2 sing N N 16 HIS CB HB3 sing N N 17 HIS CG ND1 sing Y N 18 HIS CG CD2 doub Y N 19 HIS ND1 CE1 doub Y N 20 HIS ND1 HD1 sing N N 21 HIS CD2 NE2 sing Y N 22 HIS CD2 HD2 sing N N 23 HIS CE1 NE2 sing Y N 24 HIS CE1 HE1 sing N N 25 HIS NE2 HE2 sing N N 26 HIS OXT HXT sing N N 27 HOH O H1 sing N N 28 HOH O H2 sing N N 29 ILE N CA sing N N 30 ILE N H sing N N 31 ILE N H2 sing N N 32 ILE CA C sing N N 33 ILE CA CB sing N N 34 ILE CA HA sing N N 35 ILE C O doub N N 36 ILE C OXT sing N N 37 ILE CB CG1 sing N N 38 ILE CB CG2 sing N N 39 ILE CB HB sing N N 40 ILE CG1 CD1 sing N N 41 ILE CG1 HG12 sing N N 42 ILE CG1 HG13 sing N N 43 ILE CG2 HG21 sing N N 44 ILE CG2 HG22 sing N N 45 ILE CG2 HG23 sing N N 46 ILE CD1 HD11 sing N N 47 ILE CD1 HD12 sing N N 48 ILE CD1 HD13 sing N N 49 ILE OXT HXT sing N N 50 MHS N CA sing N N 51 MHS N H sing N N 52 MHS N H2 sing N N 53 MHS CA C sing N N 54 MHS CA CB sing N N 55 MHS CA HA sing N N 56 MHS C O doub N N 57 MHS C OXT sing N N 58 MHS CB CG sing N N 59 MHS CB HB2 sing N N 60 MHS CB HB3 sing N N 61 MHS CG ND1 sing Y N 62 MHS CG CD2 doub Y N 63 MHS ND1 CE1 sing Y N 64 MHS ND1 CM sing N N 65 MHS CD2 NE2 sing Y N 66 MHS CD2 HD2 sing N N 67 MHS CE1 NE2 doub Y N 68 MHS CE1 HE1 sing N N 69 MHS CM HM1 sing N N 70 MHS CM HM2 sing N N 71 MHS CM HM3 sing N N 72 MHS OXT HXT sing N N 73 ORN N CA sing N N 74 ORN N H sing N N 75 ORN N H2 sing N N 76 ORN CA CB sing N N 77 ORN CA C sing N N 78 ORN CA HA sing N N 79 ORN CB CG sing N N 80 ORN CB HB2 sing N N 81 ORN CB HB3 sing N N 82 ORN CG CD sing N N 83 ORN CG HG2 sing N N 84 ORN CG HG3 sing N N 85 ORN CD NE sing N N 86 ORN CD HD2 sing N N 87 ORN CD HD3 sing N N 88 ORN NE HE1 sing N N 89 ORN NE HE2 sing N N 90 ORN C O doub N N 91 ORN C OXT sing N N 92 ORN OXT HXT sing N N 93 PHE N CA sing N N 94 PHE N H sing N N 95 PHE N H2 sing N N 96 PHE CA C sing N N 97 PHE CA CB sing N N 98 PHE CA HA sing N N 99 PHE C O doub N N 100 PHE C OXT sing N N 101 PHE CB CG sing N N 102 PHE CB HB2 sing N N 103 PHE CB HB3 sing N N 104 PHE CG CD1 doub Y N 105 PHE CG CD2 sing Y N 106 PHE CD1 CE1 sing Y N 107 PHE CD1 HD1 sing N N 108 PHE CD2 CE2 doub Y N 109 PHE CD2 HD2 sing N N 110 PHE CE1 CZ doub Y N 111 PHE CE1 HE1 sing N N 112 PHE CE2 CZ sing Y N 113 PHE CE2 HE2 sing N N 114 PHE CZ HZ sing N N 115 PHE OXT HXT sing N N 116 SAR N CA sing N N 117 SAR N CN sing N N 118 SAR N H sing N N 119 SAR CA C sing N N 120 SAR CA HA2 sing N N 121 SAR CA HA3 sing N N 122 SAR C O doub N N 123 SAR C OXT sing N N 124 SAR CN HN1 sing N N 125 SAR CN HN2 sing N N 126 SAR CN HN3 sing N N 127 SAR OXT HXT sing N N 128 SER N CA sing N N 129 SER N H sing N N 130 SER N H2 sing N N 131 SER CA C sing N N 132 SER CA CB sing N N 133 SER CA HA sing N N 134 SER C O doub N N 135 SER C OXT sing N N 136 SER CB OG sing N N 137 SER CB HB2 sing N N 138 SER CB HB3 sing N N 139 SER OG HG sing N N 140 SER OXT HXT sing N N 141 TRP N CA sing N N 142 TRP N H sing N N 143 TRP N H2 sing N N 144 TRP CA C sing N N 145 TRP CA CB sing N N 146 TRP CA HA sing N N 147 TRP C O doub N N 148 TRP C OXT sing N N 149 TRP CB CG sing N N 150 TRP CB HB2 sing N N 151 TRP CB HB3 sing N N 152 TRP CG CD1 doub Y N 153 TRP CG CD2 sing Y N 154 TRP CD1 NE1 sing Y N 155 TRP CD1 HD1 sing N N 156 TRP CD2 CE2 doub Y N 157 TRP CD2 CE3 sing Y N 158 TRP NE1 CE2 sing Y N 159 TRP NE1 HE1 sing N N 160 TRP CE2 CZ2 sing Y N 161 TRP CE3 CZ3 doub Y N 162 TRP CE3 HE3 sing N N 163 TRP CZ2 CH2 doub Y N 164 TRP CZ2 HZ2 sing N N 165 TRP CZ3 CH2 sing Y N 166 TRP CZ3 HZ3 sing N N 167 TRP CH2 HH2 sing N N 168 TRP OXT HXT sing N N 169 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R35GM154793-01 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'NMR-based model' # _space_group.name_H-M_alt 'I 2 2 2' _space_group.name_Hall 'I 2 2' _space_group.IT_number 23 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9OXP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.034081 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028478 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021172 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #