HEADER OXIDOREDUCTASE 25-JUN-25 9PAS TITLE CRYSTAL STRUCTURE OF RV0097 G204F VARIANT WITH VANADYL AND CADA BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: (3R)-3-[(CARBOXYMETHYL)AMINO]FATTY ACID COMPND 3 OXYGENASE/DECARBOXYLASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.14.11.78; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0097, MTCY251.16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NON-HEME IRON ENZYME, FE(II)/ALPHA-KETOGLUTARATE-DEPENDENT KEYWDS 2 DIOXYGENASES, ISONITRILE SYNTHASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.YE,C.L.DRENNAN REVDAT 1 11-MAR-26 9PAS 0 JRNL AUTH N.YE,A.DEL RIO FLORES,W.ZHANG,C.L.DRENNAN JRNL TITL A HIGHLY DYNAMIC MONONUCLEAR NON-HEME IRON ENZYME FOR THE JRNL TITL 2 TWO-STEP ISONITRILE BIOSYNTHESIS. JRNL REF NAT COMMUN V. 17 2026 JRNL REFN ESSN 2041-1723 JRNL PMID 41587996 JRNL DOI 10.1038/S41467-026-68588-W REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 92261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5400 - 4.8100 0.99 3035 151 0.1568 0.1769 REMARK 3 2 4.8100 - 3.8200 0.98 2973 163 0.1345 0.1414 REMARK 3 3 3.8200 - 3.3400 0.99 2954 163 0.1587 0.1803 REMARK 3 4 3.3400 - 3.0300 0.99 2987 155 0.1699 0.1941 REMARK 3 5 3.0300 - 2.8200 0.99 2978 162 0.1825 0.1887 REMARK 3 6 2.8200 - 2.6500 0.97 2894 148 0.1791 0.2083 REMARK 3 7 2.6500 - 2.5200 0.99 2921 160 0.1737 0.1920 REMARK 3 8 2.5200 - 2.4100 0.99 2950 158 0.1800 0.2116 REMARK 3 9 2.4100 - 2.3200 0.99 2939 170 0.1782 0.1946 REMARK 3 10 2.3200 - 2.2400 1.00 3000 138 0.1788 0.2198 REMARK 3 11 2.2400 - 2.1700 0.98 2917 156 0.1731 0.1972 REMARK 3 12 2.1700 - 2.1000 0.97 2881 155 0.1778 0.2339 REMARK 3 13 2.1000 - 2.0500 0.99 2899 156 0.1840 0.2027 REMARK 3 14 2.0500 - 2.0000 0.98 2940 148 0.1875 0.2502 REMARK 3 15 2.0000 - 1.9500 0.99 2961 157 0.1821 0.1935 REMARK 3 16 1.9500 - 1.9100 0.99 2913 140 0.1782 0.2066 REMARK 3 17 1.9100 - 1.8700 0.99 2968 137 0.1986 0.2354 REMARK 3 18 1.8700 - 1.8400 0.99 2898 172 0.1867 0.2255 REMARK 3 19 1.8400 - 1.8000 0.99 2920 189 0.1951 0.2305 REMARK 3 20 1.8000 - 1.7700 0.98 2911 117 0.1981 0.2518 REMARK 3 21 1.7700 - 1.7500 0.98 2879 175 0.1933 0.2288 REMARK 3 22 1.7500 - 1.7200 0.99 2950 141 0.1883 0.2220 REMARK 3 23 1.7200 - 1.6900 0.99 2933 156 0.1950 0.2167 REMARK 3 24 1.6900 - 1.6700 0.99 2908 169 0.1983 0.2107 REMARK 3 25 1.6700 - 1.6500 0.99 2943 144 0.1971 0.2263 REMARK 3 26 1.6500 - 1.6300 0.99 2938 151 0.2137 0.2306 REMARK 3 27 1.6300 - 1.6100 0.99 2923 163 0.2099 0.2454 REMARK 3 28 1.6100 - 1.5900 0.98 2897 137 0.2253 0.2979 REMARK 3 29 1.5900 - 1.5700 0.93 2827 144 0.2410 0.2754 REMARK 3 30 1.5700 - 1.5500 0.89 2621 128 0.2495 0.2682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.155 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4849 REMARK 3 ANGLE : 0.723 6617 REMARK 3 CHIRALITY : 0.053 723 REMARK 3 PLANARITY : 0.006 861 REMARK 3 DIHEDRAL : 13.723 1822 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 270 MM MAGNESIUM ACETATE, 16% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.86700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 292 REMARK 465 ALA A 293 REMARK 465 ALA A 294 REMARK 465 LEU A 295 REMARK 465 GLU A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 292 REMARK 465 ALA B 293 REMARK 465 ALA B 294 REMARK 465 LEU B 295 REMARK 465 GLU B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 4 CG CD CE NZ REMARK 480 LYS A 6 CG CD CE NZ REMARK 480 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 85 CB CG CD OE1 OE2 REMARK 480 GLU A 219 CD OE1 OE2 REMARK 480 LYS A 290 CD CE NZ REMARK 480 LYS B 4 CD CE NZ REMARK 480 LYS B 6 CD CE NZ REMARK 480 GLU B 8 CG CD OE1 OE2 REMARK 480 ASP B 32 CG OD1 OD2 REMARK 480 GLU B 73 CG CD OE1 OE2 REMARK 480 GLU B 84 CG CD OE1 OE2 REMARK 480 GLU B 85 CB CG CD OE1 OE2 REMARK 480 LYS B 91 CG CD CE NZ REMARK 480 LYS B 140 CD CE NZ REMARK 480 LYS B 211 CG CD CE NZ REMARK 480 GLU B 219 CB CG CD OE1 OE2 REMARK 480 LYS B 290 CD CE NZ REMARK 480 LEU B 291 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 509 O HOH B 513 2.05 REMARK 500 O HOH B 809 O HOH B 811 2.05 REMARK 500 O HOH A 750 O HOH A 779 2.09 REMARK 500 O HOH A 708 O HOH A 830 2.09 REMARK 500 O HOH B 840 O HOH B 853 2.09 REMARK 500 O HOH A 501 O HOH A 849 2.09 REMARK 500 O HOH B 753 O HOH B 853 2.11 REMARK 500 O HOH A 802 O HOH A 820 2.12 REMARK 500 O HOH A 786 O HOH A 830 2.13 REMARK 500 NH1 ARG A 177 O HOH A 501 2.14 REMARK 500 O HOH B 525 O HOH B 853 2.14 REMARK 500 O HOH B 623 O HOH B 806 2.15 REMARK 500 O HOH A 565 O HOH A 729 2.15 REMARK 500 O HOH B 579 O HOH B 853 2.16 REMARK 500 O HOH A 680 O HOH A 849 2.17 REMARK 500 O GLU A 73 O HOH A 502 2.17 REMARK 500 NZ LYS B 140 O HOH B 501 2.17 REMARK 500 O HOH A 729 O HOH A 790 2.17 REMARK 500 OD1 ASP A 28 O HOH A 503 2.18 REMARK 500 OD1 ASP A 32 O HOH A 504 2.19 REMARK 500 O HOH A 502 O HOH A 560 2.19 REMARK 500 O HIS A 264 O HOH A 505 2.19 REMARK 500 O ALA A 267 O HOH A 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 590 O HOH B 853 2654 2.05 REMARK 500 O HOH A 909 O HOH A 910 2645 2.11 REMARK 500 O HOH A 582 O HOH A 622 2545 2.14 REMARK 500 O HOH A 536 O HOH A 582 2555 2.16 REMARK 500 O HOH B 684 O HOH B 853 2654 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 52.24 -140.17 REMARK 500 LYS A 38 -43.32 77.58 REMARK 500 ALA A 94 45.75 -90.07 REMARK 500 TYR A 165 -0.42 74.20 REMARK 500 ASN B 21 51.41 -140.63 REMARK 500 LYS B 38 -39.33 75.06 REMARK 500 TYR B 165 -0.24 77.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 910 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 885 DISTANCE = 7.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VVO A 402 V1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 NE2 REMARK 620 2 VVO A 402 O1 89.1 REMARK 620 3 ASP A 99 OD1 91.8 92.7 REMARK 620 4 HIS A 260 NE2 83.6 172.0 90.8 REMARK 620 5 ACT A 401 OXT 91.0 89.4 176.5 87.4 REMARK 620 6 HOH A 550 O 177.6 93.3 88.5 94.0 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VVO B 402 V1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 97 NE2 REMARK 620 2 VVO B 402 O1 89.2 REMARK 620 3 ASP B 99 OD1 90.9 91.0 REMARK 620 4 HIS B 260 NE2 83.8 172.6 91.7 REMARK 620 5 ACT B 401 OXT 92.1 92.1 175.6 85.6 REMARK 620 6 HOH B 558 O 176.3 93.3 86.4 93.7 90.4 REMARK 620 N 1 2 3 4 5 DBREF 9PAS A 1 289 UNP P9WG83 INLPE_MYCTU 1 289 DBREF 9PAS B 1 289 UNP P9WG83 INLPE_MYCTU 1 289 SEQADV 9PAS PHE A 204 UNP P9WG83 GLY 204 ENGINEERED MUTATION SEQADV 9PAS LYS A 290 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS LEU A 291 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS ALA A 292 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS ALA A 293 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS ALA A 294 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS LEU A 295 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS GLU A 296 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS A 297 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS A 298 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS A 299 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS A 300 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS A 301 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS A 302 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS PHE B 204 UNP P9WG83 GLY 204 ENGINEERED MUTATION SEQADV 9PAS LYS B 290 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS LEU B 291 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS ALA B 292 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS ALA B 293 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS ALA B 294 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS LEU B 295 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS GLU B 296 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS B 297 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS B 298 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS B 299 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS B 300 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS B 301 UNP P9WG83 EXPRESSION TAG SEQADV 9PAS HIS B 302 UNP P9WG83 EXPRESSION TAG SEQRES 1 A 302 MET THR LEU LYS VAL LYS GLY GLU GLY LEU GLY ALA GLN SEQRES 2 A 302 VAL THR GLY VAL ASP PRO LYS ASN LEU ASP ASP ILE THR SEQRES 3 A 302 THR ASP GLU ILE ARG ASP ILE VAL TYR THR ASN LYS LEU SEQRES 4 A 302 VAL VAL LEU LYS ASP VAL HIS PRO SER PRO ARG GLU PHE SEQRES 5 A 302 ILE LYS LEU GLY ARG ILE ILE GLY GLN ILE VAL PRO TYR SEQRES 6 A 302 TYR GLU PRO MET TYR HIS HIS GLU ASP HIS PRO GLU ILE SEQRES 7 A 302 PHE VAL SER SER THR GLU GLU GLY GLN GLY VAL PRO LYS SEQRES 8 A 302 THR GLY ALA PHE TRP HIS ILE ASP TYR MET PHE MET PRO SEQRES 9 A 302 GLU PRO PHE ALA PHE SER MET VAL LEU PRO LEU ALA VAL SEQRES 10 A 302 PRO GLY HIS ASP ARG GLY THR TYR PHE ILE ASP LEU ALA SEQRES 11 A 302 ARG VAL TRP GLN SER LEU PRO ALA ALA LYS ARG ASP PRO SEQRES 12 A 302 ALA ARG GLY THR VAL SER THR HIS ASP PRO ARG ARG HIS SEQRES 13 A 302 ILE LYS ILE ARG PRO SER ASP VAL TYR ARG PRO ILE GLY SEQRES 14 A 302 GLU VAL TRP ASP GLU ILE ASN ARG THR THR PRO PRO ILE SEQRES 15 A 302 LYS TRP PRO THR VAL ILE ARG HIS PRO LYS THR GLY GLN SEQRES 16 A 302 GLU ILE LEU TYR ILE CYS ALA THR PHE THR THR LYS ILE SEQRES 17 A 302 GLU ASP LYS ASP GLY ASN PRO VAL ASP PRO GLU VAL LEU SEQRES 18 A 302 GLN GLU LEU MET ALA ALA THR GLY GLN LEU ASP PRO GLU SEQRES 19 A 302 TYR GLN SER PRO PHE ILE HIS THR GLN HIS TYR GLN VAL SEQRES 20 A 302 GLY ASP ILE ILE LEU TRP ASP ASN ARG VAL LEU MET HIS SEQRES 21 A 302 ARG ALA LYS HIS GLY SER ALA ALA GLY THR LEU THR THR SEQRES 22 A 302 TYR ARG LEU THR MET LEU ASP GLY LEU LYS THR PRO GLY SEQRES 23 A 302 TYR ALA ALA LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 24 A 302 HIS HIS HIS SEQRES 1 B 302 MET THR LEU LYS VAL LYS GLY GLU GLY LEU GLY ALA GLN SEQRES 2 B 302 VAL THR GLY VAL ASP PRO LYS ASN LEU ASP ASP ILE THR SEQRES 3 B 302 THR ASP GLU ILE ARG ASP ILE VAL TYR THR ASN LYS LEU SEQRES 4 B 302 VAL VAL LEU LYS ASP VAL HIS PRO SER PRO ARG GLU PHE SEQRES 5 B 302 ILE LYS LEU GLY ARG ILE ILE GLY GLN ILE VAL PRO TYR SEQRES 6 B 302 TYR GLU PRO MET TYR HIS HIS GLU ASP HIS PRO GLU ILE SEQRES 7 B 302 PHE VAL SER SER THR GLU GLU GLY GLN GLY VAL PRO LYS SEQRES 8 B 302 THR GLY ALA PHE TRP HIS ILE ASP TYR MET PHE MET PRO SEQRES 9 B 302 GLU PRO PHE ALA PHE SER MET VAL LEU PRO LEU ALA VAL SEQRES 10 B 302 PRO GLY HIS ASP ARG GLY THR TYR PHE ILE ASP LEU ALA SEQRES 11 B 302 ARG VAL TRP GLN SER LEU PRO ALA ALA LYS ARG ASP PRO SEQRES 12 B 302 ALA ARG GLY THR VAL SER THR HIS ASP PRO ARG ARG HIS SEQRES 13 B 302 ILE LYS ILE ARG PRO SER ASP VAL TYR ARG PRO ILE GLY SEQRES 14 B 302 GLU VAL TRP ASP GLU ILE ASN ARG THR THR PRO PRO ILE SEQRES 15 B 302 LYS TRP PRO THR VAL ILE ARG HIS PRO LYS THR GLY GLN SEQRES 16 B 302 GLU ILE LEU TYR ILE CYS ALA THR PHE THR THR LYS ILE SEQRES 17 B 302 GLU ASP LYS ASP GLY ASN PRO VAL ASP PRO GLU VAL LEU SEQRES 18 B 302 GLN GLU LEU MET ALA ALA THR GLY GLN LEU ASP PRO GLU SEQRES 19 B 302 TYR GLN SER PRO PHE ILE HIS THR GLN HIS TYR GLN VAL SEQRES 20 B 302 GLY ASP ILE ILE LEU TRP ASP ASN ARG VAL LEU MET HIS SEQRES 21 B 302 ARG ALA LYS HIS GLY SER ALA ALA GLY THR LEU THR THR SEQRES 22 B 302 TYR ARG LEU THR MET LEU ASP GLY LEU LYS THR PRO GLY SEQRES 23 B 302 TYR ALA ALA LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 24 B 302 HIS HIS HIS HET ACT A 401 4 HET VVO A 402 2 HET ACT A 403 4 HET ACT B 401 4 HET VVO B 402 2 HET VY9 B 403 17 HETNAM ACT ACETATE ION HETNAM VVO OXOVANADIUM(2+) HETNAM VY9 (3R)-3-(2-HYDROXY-2-OXOETHYLAMINO)DECANOIC ACID FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 4 VVO 2(O V 2+) FORMUL 8 VY9 C12 H23 N O4 FORMUL 9 HOH *795(H2 O) HELIX 1 AA1 ASN A 21 ILE A 25 5 5 HELIX 2 AA2 THR A 26 LYS A 38 1 13 HELIX 3 AA3 SER A 48 GLY A 60 1 13 HELIX 4 AA4 GLU A 67 MET A 69 5 3 HELIX 5 AA5 LEU A 129 SER A 135 1 7 HELIX 6 AA6 PRO A 137 ASP A 142 1 6 HELIX 7 AA7 PRO A 143 ARG A 145 5 3 HELIX 8 AA8 PRO A 153 ILE A 157 5 5 HELIX 9 AA9 ARG A 160 VAL A 164 5 5 HELIX 10 AB1 PRO A 167 THR A 179 1 13 HELIX 11 AB2 ASP A 217 THR A 228 1 12 HELIX 12 AB3 ASN B 21 ILE B 25 5 5 HELIX 13 AB4 THR B 26 LYS B 38 1 13 HELIX 14 AB5 SER B 48 GLY B 60 1 13 HELIX 15 AB6 GLU B 67 HIS B 71 5 5 HELIX 16 AB7 LEU B 129 LEU B 136 1 8 HELIX 17 AB8 PRO B 137 ARG B 145 1 9 HELIX 18 AB9 PRO B 153 ILE B 157 5 5 HELIX 19 AC1 ARG B 160 VAL B 164 5 5 HELIX 20 AC2 PRO B 167 THR B 179 1 13 HELIX 21 AC3 ASP B 217 THR B 228 1 12 SHEET 1 AA1 7 LYS A 4 LYS A 6 0 SHEET 2 AA1 7 ALA A 12 THR A 15 -1 O GLN A 13 N LYS A 6 SHEET 3 AA1 7 LEU A 39 LEU A 42 1 O VAL A 41 N VAL A 14 SHEET 4 AA1 7 ILE A 250 ASP A 254 -1 O ILE A 250 N LEU A 42 SHEET 5 AA1 7 PHE A 109 ALA A 116 -1 N VAL A 112 O ILE A 251 SHEET 6 AA1 7 THR A 272 LEU A 279 -1 O TYR A 274 N LEU A 113 SHEET 7 AA1 7 GLN A 61 ILE A 62 -1 N GLN A 61 O LEU A 279 SHEET 1 AA2 8 LYS A 4 LYS A 6 0 SHEET 2 AA2 8 ALA A 12 THR A 15 -1 O GLN A 13 N LYS A 6 SHEET 3 AA2 8 LEU A 39 LEU A 42 1 O VAL A 41 N VAL A 14 SHEET 4 AA2 8 ILE A 250 ASP A 254 -1 O ILE A 250 N LEU A 42 SHEET 5 AA2 8 PHE A 109 ALA A 116 -1 N VAL A 112 O ILE A 251 SHEET 6 AA2 8 THR A 272 LEU A 279 -1 O TYR A 274 N LEU A 113 SHEET 7 AA2 8 HIS A 75 SER A 82 -1 N SER A 81 O THR A 273 SHEET 8 AA2 8 HIS A 71 HIS A 72 -1 N HIS A 72 O ILE A 78 SHEET 1 AA3 3 ILE A 240 HIS A 244 0 SHEET 2 AA3 3 GLY A 123 ASP A 128 -1 N PHE A 126 O HIS A 241 SHEET 3 AA3 3 LEU A 258 LYS A 263 -1 O ARG A 261 N TYR A 125 SHEET 1 AA4 3 ILE A 182 PRO A 185 0 SHEET 2 AA4 3 VAL A 148 HIS A 151 -1 N HIS A 151 O ILE A 182 SHEET 3 AA4 3 THR A 205 GLU A 209 -1 O GLU A 209 N VAL A 148 SHEET 1 AA5 3 GLU A 196 LEU A 198 0 SHEET 2 AA5 3 VAL A 187 ARG A 189 -1 N ILE A 188 O ILE A 197 SHEET 3 AA5 3 TYR A 287 ALA A 288 -1 O TYR A 287 N ARG A 189 SHEET 1 AA6 7 LYS B 4 LYS B 6 0 SHEET 2 AA6 7 ALA B 12 THR B 15 -1 O GLN B 13 N LYS B 6 SHEET 3 AA6 7 LEU B 39 LEU B 42 1 O VAL B 41 N VAL B 14 SHEET 4 AA6 7 ILE B 250 ASP B 254 -1 O ILE B 250 N LEU B 42 SHEET 5 AA6 7 PHE B 109 ALA B 116 -1 N VAL B 112 O ILE B 251 SHEET 6 AA6 7 THR B 272 LEU B 279 -1 O TYR B 274 N LEU B 113 SHEET 7 AA6 7 GLN B 61 ILE B 62 -1 N GLN B 61 O LEU B 279 SHEET 1 AA7 7 LYS B 4 LYS B 6 0 SHEET 2 AA7 7 ALA B 12 THR B 15 -1 O GLN B 13 N LYS B 6 SHEET 3 AA7 7 LEU B 39 LEU B 42 1 O VAL B 41 N VAL B 14 SHEET 4 AA7 7 ILE B 250 ASP B 254 -1 O ILE B 250 N LEU B 42 SHEET 5 AA7 7 PHE B 109 ALA B 116 -1 N VAL B 112 O ILE B 251 SHEET 6 AA7 7 THR B 272 LEU B 279 -1 O TYR B 274 N LEU B 113 SHEET 7 AA7 7 PHE B 79 SER B 82 -1 N SER B 81 O THR B 273 SHEET 1 AA8 3 ILE B 240 HIS B 244 0 SHEET 2 AA8 3 GLY B 123 ASP B 128 -1 N PHE B 126 O HIS B 241 SHEET 3 AA8 3 LEU B 258 LYS B 263 -1 O ARG B 261 N TYR B 125 SHEET 1 AA9 3 ILE B 182 PRO B 185 0 SHEET 2 AA9 3 VAL B 148 HIS B 151 -1 N HIS B 151 O ILE B 182 SHEET 3 AA9 3 THR B 205 GLU B 209 -1 O GLU B 209 N VAL B 148 SHEET 1 AB1 3 GLU B 196 LEU B 198 0 SHEET 2 AB1 3 VAL B 187 ARG B 189 -1 N ILE B 188 O ILE B 197 SHEET 3 AB1 3 TYR B 287 ALA B 288 -1 O TYR B 287 N ARG B 189 LINK NE2 HIS A 97 V1 VVO A 402 1555 1555 2.19 LINK OD1 ASP A 99 V1 VVO A 402 1555 1555 2.10 LINK NE2 HIS A 260 V1 VVO A 402 1555 1555 2.27 LINK OXT ACT A 401 V1 VVO A 402 1555 1555 2.13 LINK V1 VVO A 402 O HOH A 550 1555 1555 2.09 LINK NE2 HIS B 97 V1 VVO B 402 1555 1555 2.19 LINK OD1 ASP B 99 V1 VVO B 402 1555 1555 2.15 LINK NE2 HIS B 260 V1 VVO B 402 1555 1555 2.30 LINK OXT ACT B 401 V1 VVO B 402 1555 1555 2.08 LINK V1 VVO B 402 O HOH B 558 1555 1555 2.10 CISPEP 1 THR A 284 PRO A 285 0 -2.47 CISPEP 2 THR B 284 PRO B 285 0 -1.45 CRYST1 57.209 63.734 90.631 90.00 97.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017480 0.000000 0.002174 0.00000 SCALE2 0.000000 0.015690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011119 0.00000 CONECT 772 4684 CONECT 787 4684 CONECT 2117 4684 CONECT 3117 4694 CONECT 3132 4694 CONECT 4449 4694 CONECT 4679 4680 4681 4682 CONECT 4680 4679 CONECT 4681 4679 4684 CONECT 4682 4679 CONECT 4683 4684 CONECT 4684 772 787 2117 4681 CONECT 4684 4683 4761 CONECT 4685 4686 4687 4688 CONECT 4686 4685 CONECT 4687 4685 CONECT 4688 4685 CONECT 4689 4690 4691 4692 CONECT 4690 4689 CONECT 4691 4689 4694 CONECT 4692 4689 CONECT 4693 4694 CONECT 4694 3117 3132 4449 4691 CONECT 4694 4693 5179 CONECT 4695 4698 4704 CONECT 4696 4699 4700 CONECT 4697 4700 4701 CONECT 4698 4695 4699 CONECT 4699 4696 4698 CONECT 4700 4696 4697 CONECT 4701 4697 CONECT 4702 4703 4708 4711 CONECT 4703 4702 4704 CONECT 4704 4695 4703 4707 CONECT 4705 4706 4707 CONECT 4706 4705 4709 4710 CONECT 4707 4704 4705 CONECT 4708 4702 CONECT 4709 4706 CONECT 4710 4706 CONECT 4711 4702 CONECT 4761 4684 CONECT 5179 4694 MASTER 405 0 6 21 47 0 0 6 5459 2 43 48 END