HEADER LYASE 26-JUN-25 9PBB TITLE 293K HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AMD1, AMD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: AMD1, AMD; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_CELL: PET KEYWDS POLYAMINE BIOSYNTHESIS, DECARBOXYLASE, ADOMET, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.PATEL,T.J.BONZON,T.BAHKT,O.O.FAGBOHUN,J.A.CLINGER REVDAT 2 08-OCT-25 9PBB 1 JRNL REVDAT 1 17-SEP-25 9PBB 0 JRNL AUTH J.R.PATEL,T.J.BONZON,T.F.BAKHT,O.O.FAGBOHUN,J.A.CLINGER JRNL TITL MULTI-TEMPERATURE CRYSTALLOGRAPHY OF S-ADENOSYLMETHIONINE JRNL TITL 2 DECARBOXYLASE OBSERVES DYNAMIC LOOP MOTIONS. JRNL REF BIOMOLECULES V. 15 2025 JRNL REFN ESSN 2218-273X JRNL PMID 41008581 JRNL DOI 10.3390/BIOM15091274 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4100 - 3.9400 0.99 2673 153 0.1706 0.1723 REMARK 3 2 3.9400 - 3.1300 0.99 2595 141 0.1772 0.2107 REMARK 3 3 3.1300 - 2.7300 1.00 2608 133 0.2217 0.2342 REMARK 3 4 2.7300 - 2.4800 0.99 2597 129 0.2534 0.3086 REMARK 3 5 2.4800 - 2.3100 0.99 2574 132 0.2497 0.2542 REMARK 3 6 2.3100 - 2.1700 0.93 2391 127 0.2808 0.2898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.766 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2553 REMARK 3 ANGLE : 0.934 3447 REMARK 3 CHIRALITY : 0.102 374 REMARK 3 PLANARITY : 0.008 438 REMARK 3 DIHEDRAL : 16.317 937 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 7 THROUGH 67) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5120 12.4934 15.1658 REMARK 3 T TENSOR REMARK 3 T11: 0.0803 T22: 0.3060 REMARK 3 T33: 0.1427 T12: 0.1008 REMARK 3 T13: 0.0222 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.1131 L22: 0.7360 REMARK 3 L33: 2.1482 L12: -0.5878 REMARK 3 L13: 0.1370 L23: 0.1996 REMARK 3 S TENSOR REMARK 3 S11: 0.2440 S12: 0.5813 S13: -0.0742 REMARK 3 S21: 0.1013 S22: -0.1329 S23: 0.1016 REMARK 3 S31: -0.2910 S32: -0.2682 S33: -0.0486 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 68 THROUGH 328) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6578 8.3234 18.8545 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.1120 REMARK 3 T33: 0.0947 T12: 0.0250 REMARK 3 T13: 0.0102 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.9594 L22: 1.0303 REMARK 3 L33: 2.5979 L12: 0.1744 REMARK 3 L13: -0.1635 L23: -0.3010 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: 0.2919 S13: -0.0022 REMARK 3 S21: -0.0717 S22: -0.0344 S23: -0.0452 REMARK 3 S31: -0.0206 S32: 0.1643 S33: -0.0278 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1000297080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-25 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16461 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 37.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.30600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.93200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4MG/ML ENZYME IN 200MM NACL 50MM HEPES REMARK 280 PH 7.5 1:1 TO RESERVOIR SOLUTION CONTAINING 4-8% PEG 8000 AND REMARK 280 50MM TRIS-HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.70900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.93800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.70900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.93800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B -3 REMARK 465 TYR B -2 REMARK 465 PHE B -1 REMARK 465 GLN B 0 REMARK 465 GLY B 1 REMARK 465 GLU B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 HIS B 5 REMARK 465 GLN B 21 REMARK 465 GLN B 22 REMARK 465 PRO B 23 REMARK 465 ASP B 24 REMARK 465 ALA B 25 REMARK 465 ASN B 26 REMARK 465 GLN B 27 REMARK 465 LYS A 291 REMARK 465 CYS A 292 REMARK 465 ARG A 293 REMARK 465 THR A 294 REMARK 465 VAL A 295 REMARK 465 LEU A 296 REMARK 465 ALA A 297 REMARK 465 SER A 298 REMARK 465 GLN A 329 REMARK 465 GLN A 330 REMARK 465 GLN A 331 REMARK 465 GLN A 332 REMARK 465 GLN A 333 REMARK 465 SER A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 170 CG1 CG2 CD1 REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 PRO A 299 CG CD REMARK 470 GLN A 300 CG CD OE1 NE2 REMARK 470 ASP A 317 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 211 O HOH A 501 2.09 REMARK 500 NZ LYS A 201 O HOH A 502 2.14 REMARK 500 O HOH A 606 O HOH A 607 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PYR A 68 C SER A 69 N 0.236 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 156 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 GLN A 172 CB - CA - C ANGL. DEV. = 23.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 48 48.61 73.90 REMARK 500 SER A 73 -162.50 -120.22 REMARK 500 CYS A 82 -158.52 -135.99 REMARK 500 PRO A 126 44.32 -100.82 REMARK 500 SER A 154 -142.43 -161.43 REMARK 500 SER A 154 -143.00 -161.43 REMARK 500 GLN A 172 111.33 78.03 REMARK 500 PHE A 250 47.06 -158.82 REMARK 500 ASN A 316 -102.52 49.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 155 12.39 REMARK 500 ASP A 155 14.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 606 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 607 DISTANCE = 7.01 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9P1H RELATED DB: PDB DBREF 9PBB B 2 67 UNP P17707 DCAM_HUMAN 2 67 DBREF 9PBB A 68 334 UNP P17707 DCAM_HUMAN 68 334 SEQADV 9PBB MET B -12 UNP P17707 INITIATING METHIONINE SEQADV 9PBB HIS B -11 UNP P17707 EXPRESSION TAG SEQADV 9PBB HIS B -10 UNP P17707 EXPRESSION TAG SEQADV 9PBB HIS B -9 UNP P17707 EXPRESSION TAG SEQADV 9PBB HIS B -8 UNP P17707 EXPRESSION TAG SEQADV 9PBB HIS B -7 UNP P17707 EXPRESSION TAG SEQADV 9PBB HIS B -6 UNP P17707 EXPRESSION TAG SEQADV 9PBB GLU B -5 UNP P17707 EXPRESSION TAG SEQADV 9PBB ASN B -4 UNP P17707 EXPRESSION TAG SEQADV 9PBB LEU B -3 UNP P17707 EXPRESSION TAG SEQADV 9PBB TYR B -2 UNP P17707 EXPRESSION TAG SEQADV 9PBB PHE B -1 UNP P17707 EXPRESSION TAG SEQADV 9PBB GLN B 0 UNP P17707 EXPRESSION TAG SEQADV 9PBB GLY B 1 UNP P17707 EXPRESSION TAG SEQADV 9PBB PYR A 68 UNP P17707 SER 68 CONFLICT SEQRES 1 B 80 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 80 GLY GLU ALA ALA HIS PHE PHE GLU GLY THR GLU LYS LEU SEQRES 3 B 80 LEU GLU VAL TRP PHE SER ARG GLN GLN PRO ASP ALA ASN SEQRES 4 B 80 GLN GLY SER GLY ASP LEU ARG THR ILE PRO ARG SER GLU SEQRES 5 B 80 TRP ASP ILE LEU LEU LYS ASP VAL GLN CYS SER ILE ILE SEQRES 6 B 80 SER VAL THR LYS THR ASP LYS GLN GLU ALA TYR VAL LEU SEQRES 7 B 80 SER GLU SEQRES 1 A 267 PYR SER MET PHE VAL SER LYS ARG ARG PHE ILE LEU LYS SEQRES 2 A 267 THR CYS GLY THR THR LEU LEU LEU LYS ALA LEU VAL PRO SEQRES 3 A 267 LEU LEU LYS LEU ALA ARG ASP TYR SER GLY PHE ASP SER SEQRES 4 A 267 ILE GLN SER PHE PHE TYR SER ARG LYS ASN PHE MET LYS SEQRES 5 A 267 PRO SER HIS GLN GLY TYR PRO HIS ARG ASN PHE GLN GLU SEQRES 6 A 267 GLU ILE GLU PHE LEU ASN ALA ILE PHE PRO ASN GLY ALA SEQRES 7 A 267 ALA TYR CYS MET GLY ARG MET ASN SER ASP CYS TRP TYR SEQRES 8 A 267 LEU TYR THR LEU ASP PHE PRO GLU SER ARG VAL ILE SER SEQRES 9 A 267 GLN PRO ASP GLN THR LEU GLU ILE LEU MET SER GLU LEU SEQRES 10 A 267 ASP PRO ALA VAL MET ASP GLN PHE TYR MET LYS ASP GLY SEQRES 11 A 267 VAL THR ALA LYS ASP VAL THR ARG GLU SER GLY ILE ARG SEQRES 12 A 267 ASP LEU ILE PRO GLY SER VAL ILE ASP ALA THR MET PHE SEQRES 13 A 267 ASN PRO CYS GLY TYR SER MET ASN GLY MET LYS SER ASP SEQRES 14 A 267 GLY THR TYR TRP THR ILE HIS ILE THR PRO GLU PRO GLU SEQRES 15 A 267 PHE SER TYR VAL SER PHE GLU THR ASN LEU SER GLN THR SEQRES 16 A 267 SER TYR ASP ASP LEU ILE ARG LYS VAL VAL GLU VAL PHE SEQRES 17 A 267 LYS PRO GLY LYS PHE VAL THR THR LEU PHE VAL ASN GLN SEQRES 18 A 267 SER SER LYS CYS ARG THR VAL LEU ALA SER PRO GLN LYS SEQRES 19 A 267 ILE GLU GLY PHE LYS ARG LEU ASP CYS GLN SER ALA MET SEQRES 20 A 267 PHE ASN ASP TYR ASN PHE VAL PHE THR SER PHE ALA LYS SEQRES 21 A 267 LYS GLN GLN GLN GLN GLN SER HET PYR A 68 8 HET TRS A 401 20 HET PUT A 402 18 HETNAM PYR PYRUVIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PUT 1,4-DIAMINOBUTANE HETSYN TRS TRIS BUFFER HETSYN PUT PUTRESCINE FORMUL 2 PYR C3 H4 O3 FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 PUT C4 H12 N2 FORMUL 5 HOH *133(H2 O) HELIX 1 AA1 ASP B 31 ILE B 35 5 5 HELIX 2 AA2 PRO B 36 VAL B 47 1 12 HELIX 3 AA3 LEU A 86 LYS A 89 5 4 HELIX 4 AA4 ALA A 90 GLY A 103 1 14 HELIX 5 AA5 LYS A 119 GLN A 123 5 5 HELIX 6 AA6 ASN A 129 ALA A 139 1 11 HELIX 7 AA7 ASP A 185 GLN A 191 1 7 HELIX 8 AA8 THR A 199 SER A 207 1 9 HELIX 9 AA9 GLU A 247 PHE A 250 5 4 HELIX 10 AB1 TYR A 264 LYS A 276 1 13 SHEET 1 AA1 8 SER B 50 LYS B 56 0 SHEET 2 AA1 8 GLU B 61 SER B 66 -1 O ALA B 62 N THR B 55 SHEET 3 AA1 8 SER A 69 VAL A 72 -1 O MET A 70 N TYR B 63 SHEET 4 AA1 8 ARG A 76 THR A 81 -1 O LYS A 80 N SER A 69 SHEET 5 AA1 8 LYS B 12 PHE B 18 -1 N LYS B 12 O THR A 81 SHEET 6 AA1 8 ILE A 107 LYS A 115 -1 O SER A 109 N TRP B 17 SHEET 7 AA1 8 CYS A 156 LEU A 162 -1 O TYR A 160 N TYR A 112 SHEET 8 AA1 8 GLY A 144 GLY A 150 -1 N ALA A 145 O THR A 161 SHEET 1 AA2 8 VAL A 217 MET A 222 0 SHEET 2 AA2 8 TYR A 228 MET A 233 -1 O MET A 233 N VAL A 217 SHEET 3 AA2 8 TYR A 239 THR A 245 -1 O TRP A 240 N GLY A 232 SHEET 4 AA2 8 TYR A 252 THR A 257 -1 O TYR A 252 N THR A 245 SHEET 5 AA2 8 GLN A 175 SER A 182 -1 N MET A 181 O VAL A 253 SHEET 6 AA2 8 LYS A 279 ASN A 287 -1 O LYS A 279 N SER A 182 SHEET 7 AA2 8 TYR A 318 LYS A 327 -1 O ASN A 319 N VAL A 286 SHEET 8 AA2 8 PHE A 305 PHE A 315 -1 N PHE A 315 O TYR A 318 LINK C PYR A 68 N SER A 69 1555 1555 1.57 CISPEP 1 TYR A 125 PRO A 126 0 -1.33 CISPEP 2 ASN A 224 PRO A 225 0 -1.32 CRYST1 97.418 45.876 72.248 90.00 104.97 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010265 0.000000 0.002745 0.00000 SCALE2 0.000000 0.021798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014328 0.00000 CONECT 907 908 909 915 CONECT 908 907 CONECT 909 907 910 911 CONECT 910 909 CONECT 911 909 912 913 914 CONECT 912 911 CONECT 913 911 CONECT 914 911 CONECT 915 907 CONECT 4882 4883 4884 4885 4886 CONECT 4883 4882 4887 4890 4891 CONECT 4884 4882 4888 4892 4893 CONECT 4885 4882 4889 4894 4895 CONECT 4886 4882 4896 4897 4898 CONECT 4887 4883 4899 CONECT 4888 4884 4900 CONECT 4889 4885 4901 CONECT 4890 4883 CONECT 4891 4883 CONECT 4892 4884 CONECT 4893 4884 CONECT 4894 4885 CONECT 4895 4885 CONECT 4896 4886 CONECT 4897 4886 CONECT 4898 4886 CONECT 4899 4887 CONECT 4900 4888 CONECT 4901 4889 CONECT 4902 4903 4908 4909 CONECT 4903 4902 4904 4910 4911 CONECT 4904 4903 4905 4912 4913 CONECT 4905 4904 4906 4914 4915 CONECT 4906 4905 4907 4916 4917 CONECT 4907 4906 4918 4919 CONECT 4908 4902 CONECT 4909 4902 CONECT 4910 4903 CONECT 4911 4903 CONECT 4912 4904 CONECT 4913 4904 CONECT 4914 4905 CONECT 4915 4905 CONECT 4916 4906 CONECT 4917 4906 CONECT 4918 4907 CONECT 4919 4907 MASTER 397 0 3 10 16 0 0 6 2613 2 47 28 END