HEADER OXIDOREDUCTASE 27-JUN-25 9PCM TITLE CRYSTAL STRUCTURE OF RV0097 WITH FE, CADA, AND ALPHA-KETOGLUTARATE TITLE 2 BOUND (TERNARY COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: (3R)-3-[(CARBOXYMETHYL)AMINO]FATTY ACID COMPND 3 OXYGENASE/DECARBOXYLASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.14.11.78; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0097, MTCY251.16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NON-HEME IRON ENZYME, FE(II)/ALPHA-KETOGLUTARATE-DEPENDENT KEYWDS 2 DIOXYGENASES, ISONITRILE SYNTHASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.YE,C.L.DRENNAN REVDAT 1 11-MAR-26 9PCM 0 JRNL AUTH N.YE,A.DEL RIO FLORES,W.ZHANG,C.L.DRENNAN JRNL TITL A HIGHLY DYNAMIC MONONUCLEAR NON-HEME IRON ENZYME FOR THE JRNL TITL 2 TWO-STEP ISONITRILE BIOSYNTHESIS. JRNL REF NAT COMMUN V. 17 2026 JRNL REFN ESSN 2041-1723 JRNL PMID 41587996 JRNL DOI 10.1038/S41467-026-68588-W REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 110062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 5527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3200 - 4.5000 0.99 3654 184 0.1683 0.1884 REMARK 3 2 4.5000 - 3.5700 0.97 3517 193 0.1688 0.1674 REMARK 3 3 3.5700 - 3.1200 0.98 3573 187 0.1938 0.2108 REMARK 3 4 3.1200 - 2.8400 0.99 3524 200 0.1984 0.2311 REMARK 3 5 2.8400 - 2.6300 0.99 3571 182 0.1996 0.2280 REMARK 3 6 2.6300 - 2.4800 0.97 3479 190 0.1989 0.2317 REMARK 3 7 2.4800 - 2.3500 0.98 3520 185 0.1994 0.2121 REMARK 3 8 2.3500 - 2.2500 0.98 3513 197 0.2023 0.2283 REMARK 3 9 2.2500 - 2.1700 0.98 3521 178 0.1947 0.2258 REMARK 3 10 2.1700 - 2.0900 0.98 3527 188 0.2031 0.2180 REMARK 3 11 2.0900 - 2.0300 0.98 3500 197 0.2010 0.2507 REMARK 3 12 2.0300 - 1.9700 0.96 3398 159 0.2013 0.2231 REMARK 3 13 1.9700 - 1.9200 0.96 3442 187 0.1923 0.2105 REMARK 3 14 1.9200 - 1.8700 0.98 3551 152 0.2033 0.2318 REMARK 3 15 1.8700 - 1.8300 0.98 3493 215 0.2141 0.2369 REMARK 3 16 1.8300 - 1.7900 0.99 3475 196 0.2135 0.2503 REMARK 3 17 1.7900 - 1.7500 0.98 3550 178 0.2048 0.2720 REMARK 3 18 1.7500 - 1.7200 0.98 3472 175 0.2049 0.2297 REMARK 3 19 1.7200 - 1.6900 0.98 3547 195 0.2024 0.2256 REMARK 3 20 1.6900 - 1.6600 0.96 3385 187 0.2041 0.2390 REMARK 3 21 1.6600 - 1.6300 0.97 3437 170 0.2124 0.2369 REMARK 3 22 1.6300 - 1.6100 0.98 3526 198 0.2136 0.2384 REMARK 3 23 1.6100 - 1.5800 0.98 3456 178 0.2066 0.2530 REMARK 3 24 1.5800 - 1.5600 0.98 3532 167 0.2095 0.2400 REMARK 3 25 1.5600 - 1.5400 0.98 3436 169 0.2177 0.2274 REMARK 3 26 1.5400 - 1.5200 0.98 3513 188 0.2200 0.2543 REMARK 3 27 1.5200 - 1.5000 0.98 3447 180 0.2261 0.2692 REMARK 3 28 1.5000 - 1.4800 0.97 3476 195 0.2358 0.2817 REMARK 3 29 1.4800 - 1.4700 0.95 3373 191 0.2472 0.2771 REMARK 3 30 1.4700 - 1.4500 0.89 3127 166 0.2412 0.2560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4873 REMARK 3 ANGLE : 0.814 6659 REMARK 3 CHIRALITY : 0.081 729 REMARK 3 PLANARITY : 0.008 866 REMARK 3 DIHEDRAL : 12.574 1856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 270 MM MAGNESIUM ACETATE, 16% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.72700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 291 REMARK 465 ALA A 292 REMARK 465 ALA A 293 REMARK 465 ALA A 294 REMARK 465 LEU A 295 REMARK 465 GLU A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 291 REMARK 465 ALA B 292 REMARK 465 ALA B 293 REMARK 465 ALA B 294 REMARK 465 LEU B 295 REMARK 465 GLU B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 6 CD CE NZ REMARK 480 GLU A 8 CG CD OE1 OE2 REMARK 480 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 84 CG CD OE1 OE2 REMARK 480 GLU A 85 CD OE1 OE2 REMARK 480 GLU A 219 CD OE1 OE2 REMARK 480 LYS A 290 CD CE NZ REMARK 480 LYS B 4 CD CE NZ REMARK 480 LYS B 6 CD CE NZ REMARK 480 GLU B 73 CD OE1 OE2 REMARK 480 GLU B 84 CG CD OE1 OE2 REMARK 480 GLU B 85 CD OE1 OE2 REMARK 480 LYS B 91 CG CD CE NZ REMARK 480 LYS B 140 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 535 O HOH B 772 2.02 REMARK 500 O HOH A 651 O HOH A 695 2.08 REMARK 500 O HOH B 581 O HOH B 701 2.11 REMARK 500 O HOH A 501 O HOH A 728 2.13 REMARK 500 O HOH B 770 O HOH B 772 2.13 REMARK 500 O HOH B 531 O HOH B 772 2.14 REMARK 500 O HOH A 724 O HOH A 763 2.15 REMARK 500 OD2 ASP B 212 O HOH B 501 2.16 REMARK 500 OD1 ASP A 32 O HOH A 501 2.17 REMARK 500 O GLU A 73 O HOH A 502 2.17 REMARK 500 O HOH A 502 O HOH A 577 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 547 O HOH B 772 2655 2.01 REMARK 500 O HOH A 866 O HOH B 814 1556 2.17 REMARK 500 O HOH A 879 O HOH A 880 2646 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 -41.56 78.10 REMARK 500 ALA A 94 49.19 -87.10 REMARK 500 TYR A 165 -1.42 78.49 REMARK 500 LYS B 38 -41.11 77.31 REMARK 500 TYR B 165 -3.18 78.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 881 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 818 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 819 DISTANCE = 6.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 NE2 REMARK 620 2 ASP A 99 OD1 94.1 REMARK 620 3 HIS A 260 NE2 87.7 97.4 REMARK 620 4 AKG A 401 O1 93.6 100.0 162.4 REMARK 620 5 AKG A 401 O5 90.8 173.5 87.0 75.4 REMARK 620 6 HOH A 576 O 176.5 86.7 95.5 82.9 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 97 NE2 REMARK 620 2 ASP B 99 OD1 93.6 REMARK 620 3 HIS B 260 NE2 88.9 98.6 REMARK 620 4 HOH B 560 O 175.8 86.0 95.3 REMARK 620 5 HOH B 730 O 87.1 97.8 163.3 88.8 REMARK 620 6 HOH B 739 O 93.2 168.4 90.9 86.6 73.1 REMARK 620 N 1 2 3 4 5 DBREF 9PCM A 1 289 UNP P9WG83 INLPE_MYCTU 1 289 DBREF 9PCM B 1 289 UNP P9WG83 INLPE_MYCTU 1 289 SEQADV 9PCM LYS A 290 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM LEU A 291 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM ALA A 292 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM ALA A 293 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM ALA A 294 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM LEU A 295 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM GLU A 296 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS A 297 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS A 298 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS A 299 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS A 300 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS A 301 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS A 302 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM LYS B 290 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM LEU B 291 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM ALA B 292 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM ALA B 293 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM ALA B 294 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM LEU B 295 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM GLU B 296 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS B 297 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS B 298 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS B 299 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS B 300 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS B 301 UNP P9WG83 EXPRESSION TAG SEQADV 9PCM HIS B 302 UNP P9WG83 EXPRESSION TAG SEQRES 1 A 302 MET THR LEU LYS VAL LYS GLY GLU GLY LEU GLY ALA GLN SEQRES 2 A 302 VAL THR GLY VAL ASP PRO LYS ASN LEU ASP ASP ILE THR SEQRES 3 A 302 THR ASP GLU ILE ARG ASP ILE VAL TYR THR ASN LYS LEU SEQRES 4 A 302 VAL VAL LEU LYS ASP VAL HIS PRO SER PRO ARG GLU PHE SEQRES 5 A 302 ILE LYS LEU GLY ARG ILE ILE GLY GLN ILE VAL PRO TYR SEQRES 6 A 302 TYR GLU PRO MET TYR HIS HIS GLU ASP HIS PRO GLU ILE SEQRES 7 A 302 PHE VAL SER SER THR GLU GLU GLY GLN GLY VAL PRO LYS SEQRES 8 A 302 THR GLY ALA PHE TRP HIS ILE ASP TYR MET PHE MET PRO SEQRES 9 A 302 GLU PRO PHE ALA PHE SER MET VAL LEU PRO LEU ALA VAL SEQRES 10 A 302 PRO GLY HIS ASP ARG GLY THR TYR PHE ILE ASP LEU ALA SEQRES 11 A 302 ARG VAL TRP GLN SER LEU PRO ALA ALA LYS ARG ASP PRO SEQRES 12 A 302 ALA ARG GLY THR VAL SER THR HIS ASP PRO ARG ARG HIS SEQRES 13 A 302 ILE LYS ILE ARG PRO SER ASP VAL TYR ARG PRO ILE GLY SEQRES 14 A 302 GLU VAL TRP ASP GLU ILE ASN ARG THR THR PRO PRO ILE SEQRES 15 A 302 LYS TRP PRO THR VAL ILE ARG HIS PRO LYS THR GLY GLN SEQRES 16 A 302 GLU ILE LEU TYR ILE CYS ALA THR GLY THR THR LYS ILE SEQRES 17 A 302 GLU ASP LYS ASP GLY ASN PRO VAL ASP PRO GLU VAL LEU SEQRES 18 A 302 GLN GLU LEU MET ALA ALA THR GLY GLN LEU ASP PRO GLU SEQRES 19 A 302 TYR GLN SER PRO PHE ILE HIS THR GLN HIS TYR GLN VAL SEQRES 20 A 302 GLY ASP ILE ILE LEU TRP ASP ASN ARG VAL LEU MET HIS SEQRES 21 A 302 ARG ALA LYS HIS GLY SER ALA ALA GLY THR LEU THR THR SEQRES 22 A 302 TYR ARG LEU THR MET LEU ASP GLY LEU LYS THR PRO GLY SEQRES 23 A 302 TYR ALA ALA LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 24 A 302 HIS HIS HIS SEQRES 1 B 302 MET THR LEU LYS VAL LYS GLY GLU GLY LEU GLY ALA GLN SEQRES 2 B 302 VAL THR GLY VAL ASP PRO LYS ASN LEU ASP ASP ILE THR SEQRES 3 B 302 THR ASP GLU ILE ARG ASP ILE VAL TYR THR ASN LYS LEU SEQRES 4 B 302 VAL VAL LEU LYS ASP VAL HIS PRO SER PRO ARG GLU PHE SEQRES 5 B 302 ILE LYS LEU GLY ARG ILE ILE GLY GLN ILE VAL PRO TYR SEQRES 6 B 302 TYR GLU PRO MET TYR HIS HIS GLU ASP HIS PRO GLU ILE SEQRES 7 B 302 PHE VAL SER SER THR GLU GLU GLY GLN GLY VAL PRO LYS SEQRES 8 B 302 THR GLY ALA PHE TRP HIS ILE ASP TYR MET PHE MET PRO SEQRES 9 B 302 GLU PRO PHE ALA PHE SER MET VAL LEU PRO LEU ALA VAL SEQRES 10 B 302 PRO GLY HIS ASP ARG GLY THR TYR PHE ILE ASP LEU ALA SEQRES 11 B 302 ARG VAL TRP GLN SER LEU PRO ALA ALA LYS ARG ASP PRO SEQRES 12 B 302 ALA ARG GLY THR VAL SER THR HIS ASP PRO ARG ARG HIS SEQRES 13 B 302 ILE LYS ILE ARG PRO SER ASP VAL TYR ARG PRO ILE GLY SEQRES 14 B 302 GLU VAL TRP ASP GLU ILE ASN ARG THR THR PRO PRO ILE SEQRES 15 B 302 LYS TRP PRO THR VAL ILE ARG HIS PRO LYS THR GLY GLN SEQRES 16 B 302 GLU ILE LEU TYR ILE CYS ALA THR GLY THR THR LYS ILE SEQRES 17 B 302 GLU ASP LYS ASP GLY ASN PRO VAL ASP PRO GLU VAL LEU SEQRES 18 B 302 GLN GLU LEU MET ALA ALA THR GLY GLN LEU ASP PRO GLU SEQRES 19 B 302 TYR GLN SER PRO PHE ILE HIS THR GLN HIS TYR GLN VAL SEQRES 20 B 302 GLY ASP ILE ILE LEU TRP ASP ASN ARG VAL LEU MET HIS SEQRES 21 B 302 ARG ALA LYS HIS GLY SER ALA ALA GLY THR LEU THR THR SEQRES 22 B 302 TYR ARG LEU THR MET LEU ASP GLY LEU LYS THR PRO GLY SEQRES 23 B 302 TYR ALA ALA LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 24 B 302 HIS HIS HIS HET AKG A 401 10 HET VY9 A 402 17 HET PEG A 403 7 HET FE A 404 1 HET VY9 B 401 17 HET PEG B 402 7 HET FE B 403 1 HETNAM AKG 2-OXOGLUTARIC ACID HETNAM VY9 (3R)-3-(2-HYDROXY-2-OXOETHYLAMINO)DECANOIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM FE FE (III) ION FORMUL 3 AKG C5 H6 O5 FORMUL 4 VY9 2(C12 H23 N O4) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 FE 2(FE 3+) FORMUL 10 HOH *700(H2 O) HELIX 1 AA1 ASN A 21 ILE A 25 5 5 HELIX 2 AA2 THR A 26 LYS A 38 1 13 HELIX 3 AA3 SER A 48 GLY A 60 1 13 HELIX 4 AA4 GLU A 67 MET A 69 5 3 HELIX 5 AA5 LEU A 129 SER A 135 1 7 HELIX 6 AA6 PRO A 137 ASP A 142 1 6 HELIX 7 AA7 PRO A 143 ARG A 145 5 3 HELIX 8 AA8 PRO A 153 ILE A 157 5 5 HELIX 9 AA9 ARG A 160 VAL A 164 5 5 HELIX 10 AB1 PRO A 167 THR A 179 1 13 HELIX 11 AB2 ASP A 217 THR A 228 1 12 HELIX 12 AB3 ASN B 21 ILE B 25 5 5 HELIX 13 AB4 THR B 26 LYS B 38 1 13 HELIX 14 AB5 SER B 48 GLY B 60 1 13 HELIX 15 AB6 GLU B 67 MET B 69 5 3 HELIX 16 AB7 LEU B 129 LEU B 136 1 8 HELIX 17 AB8 PRO B 137 ARG B 145 1 9 HELIX 18 AB9 PRO B 153 ILE B 157 5 5 HELIX 19 AC1 ARG B 160 VAL B 164 5 5 HELIX 20 AC2 PRO B 167 THR B 179 1 13 HELIX 21 AC3 PRO B 218 THR B 228 1 11 SHEET 1 AA1 7 LYS A 4 LYS A 6 0 SHEET 2 AA1 7 ALA A 12 THR A 15 -1 O GLN A 13 N LYS A 6 SHEET 3 AA1 7 LEU A 39 LEU A 42 1 O VAL A 41 N VAL A 14 SHEET 4 AA1 7 ILE A 250 ASP A 254 -1 O ILE A 250 N LEU A 42 SHEET 5 AA1 7 PHE A 109 ALA A 116 -1 N VAL A 112 O ILE A 251 SHEET 6 AA1 7 THR A 272 LEU A 279 -1 O TYR A 274 N LEU A 113 SHEET 7 AA1 7 GLN A 61 ILE A 62 -1 N GLN A 61 O LEU A 279 SHEET 1 AA2 8 LYS A 4 LYS A 6 0 SHEET 2 AA2 8 ALA A 12 THR A 15 -1 O GLN A 13 N LYS A 6 SHEET 3 AA2 8 LEU A 39 LEU A 42 1 O VAL A 41 N VAL A 14 SHEET 4 AA2 8 ILE A 250 ASP A 254 -1 O ILE A 250 N LEU A 42 SHEET 5 AA2 8 PHE A 109 ALA A 116 -1 N VAL A 112 O ILE A 251 SHEET 6 AA2 8 THR A 272 LEU A 279 -1 O TYR A 274 N LEU A 113 SHEET 7 AA2 8 HIS A 75 SER A 82 -1 N SER A 81 O THR A 273 SHEET 8 AA2 8 HIS A 71 HIS A 72 -1 N HIS A 72 O ILE A 78 SHEET 1 AA3 3 ILE A 240 HIS A 244 0 SHEET 2 AA3 3 GLY A 123 ASP A 128 -1 N PHE A 126 O HIS A 241 SHEET 3 AA3 3 LEU A 258 LYS A 263 -1 O ARG A 261 N TYR A 125 SHEET 1 AA4 3 ILE A 182 PRO A 185 0 SHEET 2 AA4 3 VAL A 148 HIS A 151 -1 N SER A 149 O TRP A 184 SHEET 3 AA4 3 THR A 205 GLU A 209 -1 O GLU A 209 N VAL A 148 SHEET 1 AA5 3 GLU A 196 LEU A 198 0 SHEET 2 AA5 3 VAL A 187 ARG A 189 -1 N ILE A 188 O ILE A 197 SHEET 3 AA5 3 TYR A 287 ALA A 288 -1 O TYR A 287 N ARG A 189 SHEET 1 AA6 7 LYS B 4 LYS B 6 0 SHEET 2 AA6 7 ALA B 12 THR B 15 -1 O GLN B 13 N LYS B 6 SHEET 3 AA6 7 LEU B 39 LEU B 42 1 O VAL B 41 N VAL B 14 SHEET 4 AA6 7 ILE B 250 ASP B 254 -1 O ILE B 250 N LEU B 42 SHEET 5 AA6 7 PHE B 109 ALA B 116 -1 N VAL B 112 O ILE B 251 SHEET 6 AA6 7 THR B 272 LEU B 279 -1 O TYR B 274 N LEU B 113 SHEET 7 AA6 7 GLN B 61 ILE B 62 -1 N GLN B 61 O LEU B 279 SHEET 1 AA7 8 LYS B 4 LYS B 6 0 SHEET 2 AA7 8 ALA B 12 THR B 15 -1 O GLN B 13 N LYS B 6 SHEET 3 AA7 8 LEU B 39 LEU B 42 1 O VAL B 41 N VAL B 14 SHEET 4 AA7 8 ILE B 250 ASP B 254 -1 O ILE B 250 N LEU B 42 SHEET 5 AA7 8 PHE B 109 ALA B 116 -1 N VAL B 112 O ILE B 251 SHEET 6 AA7 8 THR B 272 LEU B 279 -1 O TYR B 274 N LEU B 113 SHEET 7 AA7 8 HIS B 75 SER B 82 -1 N SER B 81 O THR B 273 SHEET 8 AA7 8 HIS B 71 HIS B 72 -1 N HIS B 72 O ILE B 78 SHEET 1 AA8 3 ILE B 240 HIS B 244 0 SHEET 2 AA8 3 GLY B 123 ASP B 128 -1 N PHE B 126 O HIS B 241 SHEET 3 AA8 3 LEU B 258 LYS B 263 -1 O ARG B 261 N TYR B 125 SHEET 1 AA9 3 ILE B 182 PRO B 185 0 SHEET 2 AA9 3 VAL B 148 HIS B 151 -1 N SER B 149 O TRP B 184 SHEET 3 AA9 3 THR B 205 GLU B 209 -1 O GLU B 209 N VAL B 148 SHEET 1 AB1 3 GLU B 196 LEU B 198 0 SHEET 2 AB1 3 VAL B 187 ARG B 189 -1 N ILE B 188 O ILE B 197 SHEET 3 AB1 3 TYR B 287 ALA B 288 -1 O TYR B 287 N ARG B 189 LINK NE2 HIS A 97 FE FE A 404 1555 1555 2.17 LINK OD1 ASP A 99 FE FE A 404 1555 1555 2.10 LINK NE2 HIS A 260 FE FE A 404 1555 1555 2.16 LINK O1 AKG A 401 FE FE A 404 1555 1555 2.20 LINK O5 AKG A 401 FE FE A 404 1555 1555 2.21 LINK FE FE A 404 O HOH A 576 1555 1555 2.19 LINK NE2 HIS B 97 FE FE B 403 1555 1555 2.15 LINK OD1 ASP B 99 FE FE B 403 1555 1555 2.16 LINK NE2 HIS B 260 FE FE B 403 1555 1555 2.12 LINK FE FE B 403 O HOH B 560 1555 1555 2.17 LINK FE FE B 403 O HOH B 730 1555 1555 2.32 LINK FE FE B 403 O HOH B 739 1555 1555 2.30 CISPEP 1 THR A 284 PRO A 285 0 -1.64 CISPEP 2 THR A 284 PRO A 285 0 -2.15 CISPEP 3 THR B 284 PRO B 285 0 -0.19 CRYST1 57.042 63.454 90.088 90.00 97.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017531 0.000000 0.002264 0.00000 SCALE2 0.000000 0.015759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011192 0.00000 CONECT 791 4705 CONECT 806 4705 CONECT 2117 4705 CONECT 3116 4730 CONECT 3131 4730 CONECT 4449 4730 CONECT 4671 4672 4673 4674 CONECT 4672 4671 4705 CONECT 4673 4671 CONECT 4674 4671 4675 4676 CONECT 4675 4674 4705 CONECT 4676 4674 4677 CONECT 4677 4676 4678 CONECT 4678 4677 4679 4680 CONECT 4679 4678 CONECT 4680 4678 CONECT 4681 4684 4690 CONECT 4682 4685 4686 CONECT 4683 4686 4687 CONECT 4684 4681 4685 CONECT 4685 4682 4684 CONECT 4686 4682 4683 CONECT 4687 4683 CONECT 4688 4689 4694 4697 CONECT 4689 4688 4690 CONECT 4690 4681 4689 4693 CONECT 4691 4692 4693 CONECT 4692 4691 4695 4696 CONECT 4693 4690 4691 CONECT 4694 4688 CONECT 4695 4692 CONECT 4696 4692 CONECT 4697 4688 CONECT 4698 4699 4700 CONECT 4699 4698 CONECT 4700 4698 4701 CONECT 4701 4700 4702 CONECT 4702 4701 4703 CONECT 4703 4702 4704 CONECT 4704 4703 CONECT 4705 791 806 2117 4672 CONECT 4705 4675 4806 CONECT 4706 4709 4715 CONECT 4707 4710 4711 CONECT 4708 4711 4712 CONECT 4709 4706 4710 CONECT 4710 4707 4709 CONECT 4711 4707 4708 CONECT 4712 4708 CONECT 4713 4714 4719 4722 CONECT 4714 4713 4715 CONECT 4715 4706 4714 4718 CONECT 4716 4717 4718 CONECT 4717 4716 4720 4721 CONECT 4718 4715 4716 CONECT 4719 4713 CONECT 4720 4717 CONECT 4721 4717 CONECT 4722 4713 CONECT 4723 4724 4725 CONECT 4724 4723 CONECT 4725 4723 4726 CONECT 4726 4725 4727 CONECT 4727 4726 4728 CONECT 4728 4727 4729 CONECT 4729 4728 CONECT 4730 3116 3131 4449 5171 CONECT 4730 5341 5350 CONECT 4806 4705 CONECT 5171 4730 CONECT 5341 4730 CONECT 5350 4730 MASTER 387 0 7 21 48 0 0 6 5361 2 72 48 END