data_9PD7 # _entry.id 9PD7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9PD7 pdb_00009pd7 10.2210/pdb9pd7/pdb WWPDB D_1000297596 ? ? EMDB EMD-71528 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-07-08 ? 2 'EM metadata' 1 0 2026-07-08 ? 3 'Half map' 1 0 2026-07-08 1 4 'Half map' 1 0 2026-07-08 2 5 Image 1 0 2026-07-08 ? 6 'Primary map' 1 0 2026-07-08 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9PD7 _pdbx_database_status.recvd_initial_deposition_date 2025-06-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'YG18 peptide - ribbon' _pdbx_database_related.db_id EMD-71528 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email ehe2n@virginia.edu _pdbx_contact_author.name_first Edward _pdbx_contact_author.name_last Egelman _pdbx_contact_author.name_mi H. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4844-5212 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sonani, R.R.' 1 ? 'Distaffen, H.E.' 2 ? 'Nilsson, B.L.' 3 ? 'Egelman, E.H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'YG18 peptide - ribbon' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sonani, R.R.' 1 ? primary 'Egelman, E.H.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'YG 18 peptide' _entity.formula_weight 1075.281 _entity.pdbx_number_of_molecules 31 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)FKFGFKFE(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XFKFGFKFEX _entity_poly.pdbx_strand_id N,O,P,Q,E,F,G,H,R,S,T,U,I,J,K,L,Y,Z,a,b,M,V,W,X,g,h,i,j,c,e,f _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PHE n 1 3 LYS n 1 4 PHE n 1 5 GLY n 1 6 PHE n 1 7 LYS n 1 8 PHE n 1 9 GLU n 1 10 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 1 ACE 5CR N . n A 1 2 PHE 2 1 1 PHE 5CR N . n A 1 3 LYS 3 2 2 LYS LYS N . n A 1 4 PHE 4 3 3 PHE PHE N . n A 1 5 GLY 5 4 4 GLY GLY N . n A 1 6 PHE 6 5 5 PHE PHE N . n A 1 7 LYS 7 6 6 LYS LYS N . n A 1 8 PHE 8 7 7 PHE PHE N . n A 1 9 GLU 9 8 8 GLU GMA N . n A 1 10 NH2 10 9 8 NH2 GMA N . n B 1 1 ACE 1 0 1 ACE 5CR O . n B 1 2 PHE 2 1 1 PHE 5CR O . n B 1 3 LYS 3 2 2 LYS LYS O . n B 1 4 PHE 4 3 3 PHE PHE O . n B 1 5 GLY 5 4 4 GLY GLY O . n B 1 6 PHE 6 5 5 PHE PHE O . n B 1 7 LYS 7 6 6 LYS LYS O . n B 1 8 PHE 8 7 7 PHE PHE O . n B 1 9 GLU 9 8 8 GLU GMA O . n B 1 10 NH2 10 9 8 NH2 GMA O . n C 1 1 ACE 1 0 1 ACE 5CR P . n C 1 2 PHE 2 1 1 PHE 5CR P . n C 1 3 LYS 3 2 2 LYS LYS P . n C 1 4 PHE 4 3 3 PHE PHE P . n C 1 5 GLY 5 4 4 GLY GLY P . n C 1 6 PHE 6 5 5 PHE PHE P . n C 1 7 LYS 7 6 6 LYS LYS P . n C 1 8 PHE 8 7 7 PHE PHE P . n C 1 9 GLU 9 8 8 GLU GMA P . n C 1 10 NH2 10 9 8 NH2 GMA P . n D 1 1 ACE 1 0 1 ACE 5CR Q . n D 1 2 PHE 2 1 1 PHE 5CR Q . n D 1 3 LYS 3 2 2 LYS LYS Q . n D 1 4 PHE 4 3 3 PHE PHE Q . n D 1 5 GLY 5 4 4 GLY GLY Q . n D 1 6 PHE 6 5 5 PHE PHE Q . n D 1 7 LYS 7 6 6 LYS LYS Q . n D 1 8 PHE 8 7 7 PHE PHE Q . n D 1 9 GLU 9 8 8 GLU GMA Q . n D 1 10 NH2 10 9 8 NH2 GMA Q . n E 1 1 ACE 1 0 1 ACE 5CR E . n E 1 2 PHE 2 1 1 PHE 5CR E . n E 1 3 LYS 3 2 2 LYS LYS E . n E 1 4 PHE 4 3 3 PHE PHE E . n E 1 5 GLY 5 4 4 GLY GLY E . n E 1 6 PHE 6 5 5 PHE PHE E . n E 1 7 LYS 7 6 6 LYS LYS E . n E 1 8 PHE 8 7 7 PHE PHE E . n E 1 9 GLU 9 8 8 GLU GMA E . n E 1 10 NH2 10 9 8 NH2 GMA E . n F 1 1 ACE 1 0 1 ACE 5CR F . n F 1 2 PHE 2 1 1 PHE 5CR F . n F 1 3 LYS 3 2 2 LYS LYS F . n F 1 4 PHE 4 3 3 PHE PHE F . n F 1 5 GLY 5 4 4 GLY GLY F . n F 1 6 PHE 6 5 5 PHE PHE F . n F 1 7 LYS 7 6 6 LYS LYS F . n F 1 8 PHE 8 7 7 PHE PHE F . n F 1 9 GLU 9 8 8 GLU GMA F . n F 1 10 NH2 10 9 8 NH2 GMA F . n G 1 1 ACE 1 0 1 ACE 5CR G . n G 1 2 PHE 2 1 1 PHE 5CR G . n G 1 3 LYS 3 2 2 LYS LYS G . n G 1 4 PHE 4 3 3 PHE PHE G . n G 1 5 GLY 5 4 4 GLY GLY G . n G 1 6 PHE 6 5 5 PHE PHE G . n G 1 7 LYS 7 6 6 LYS LYS G . n G 1 8 PHE 8 7 7 PHE PHE G . n G 1 9 GLU 9 8 8 GLU GMA G . n G 1 10 NH2 10 9 8 NH2 GMA G . n H 1 1 ACE 1 0 1 ACE 5CR H . n H 1 2 PHE 2 1 1 PHE 5CR H . n H 1 3 LYS 3 2 2 LYS LYS H . n H 1 4 PHE 4 3 3 PHE PHE H . n H 1 5 GLY 5 4 4 GLY GLY H . n H 1 6 PHE 6 5 5 PHE PHE H . n H 1 7 LYS 7 6 6 LYS LYS H . n H 1 8 PHE 8 7 7 PHE PHE H . n H 1 9 GLU 9 8 8 GLU GMA H . n H 1 10 NH2 10 9 8 NH2 GMA H . n I 1 1 ACE 1 0 1 ACE 5CR R . n I 1 2 PHE 2 1 1 PHE 5CR R . n I 1 3 LYS 3 2 2 LYS LYS R . n I 1 4 PHE 4 3 3 PHE PHE R . n I 1 5 GLY 5 4 4 GLY GLY R . n I 1 6 PHE 6 5 5 PHE PHE R . n I 1 7 LYS 7 6 6 LYS LYS R . n I 1 8 PHE 8 7 7 PHE PHE R . n I 1 9 GLU 9 8 8 GLU GMA R . n I 1 10 NH2 10 9 8 NH2 GMA R . n J 1 1 ACE 1 0 1 ACE 5CR S . n J 1 2 PHE 2 1 1 PHE 5CR S . n J 1 3 LYS 3 2 2 LYS LYS S . n J 1 4 PHE 4 3 3 PHE PHE S . n J 1 5 GLY 5 4 4 GLY GLY S . n J 1 6 PHE 6 5 5 PHE PHE S . n J 1 7 LYS 7 6 6 LYS LYS S . n J 1 8 PHE 8 7 7 PHE PHE S . n J 1 9 GLU 9 8 8 GLU GMA S . n J 1 10 NH2 10 9 8 NH2 GMA S . n K 1 1 ACE 1 0 1 ACE 5CR T . n K 1 2 PHE 2 1 1 PHE 5CR T . n K 1 3 LYS 3 2 2 LYS LYS T . n K 1 4 PHE 4 3 3 PHE PHE T . n K 1 5 GLY 5 4 4 GLY GLY T . n K 1 6 PHE 6 5 5 PHE PHE T . n K 1 7 LYS 7 6 6 LYS LYS T . n K 1 8 PHE 8 7 7 PHE PHE T . n K 1 9 GLU 9 8 8 GLU GMA T . n K 1 10 NH2 10 9 8 NH2 GMA T . n L 1 1 ACE 1 0 1 ACE 5CR U . n L 1 2 PHE 2 1 1 PHE 5CR U . n L 1 3 LYS 3 2 2 LYS LYS U . n L 1 4 PHE 4 3 3 PHE PHE U . n L 1 5 GLY 5 4 4 GLY GLY U . n L 1 6 PHE 6 5 5 PHE PHE U . n L 1 7 LYS 7 6 6 LYS LYS U . n L 1 8 PHE 8 7 7 PHE PHE U . n L 1 9 GLU 9 8 8 GLU GMA U . n L 1 10 NH2 10 9 8 NH2 GMA U . n M 1 1 ACE 1 0 1 ACE 5CR I . n M 1 2 PHE 2 1 1 PHE 5CR I . n M 1 3 LYS 3 2 2 LYS LYS I . n M 1 4 PHE 4 3 3 PHE PHE I . n M 1 5 GLY 5 4 4 GLY GLY I . n M 1 6 PHE 6 5 5 PHE PHE I . n M 1 7 LYS 7 6 6 LYS LYS I . n M 1 8 PHE 8 7 7 PHE PHE I . n M 1 9 GLU 9 8 8 GLU GMA I . n M 1 10 NH2 10 9 8 NH2 GMA I . n N 1 1 ACE 1 0 1 ACE 5CR J . n N 1 2 PHE 2 1 1 PHE 5CR J . n N 1 3 LYS 3 2 2 LYS LYS J . n N 1 4 PHE 4 3 3 PHE PHE J . n N 1 5 GLY 5 4 4 GLY GLY J . n N 1 6 PHE 6 5 5 PHE PHE J . n N 1 7 LYS 7 6 6 LYS LYS J . n N 1 8 PHE 8 7 7 PHE PHE J . n N 1 9 GLU 9 8 8 GLU GMA J . n N 1 10 NH2 10 9 8 NH2 GMA J . n O 1 1 ACE 1 0 1 ACE 5CR K . n O 1 2 PHE 2 1 1 PHE 5CR K . n O 1 3 LYS 3 2 2 LYS LYS K . n O 1 4 PHE 4 3 3 PHE PHE K . n O 1 5 GLY 5 4 4 GLY GLY K . n O 1 6 PHE 6 5 5 PHE PHE K . n O 1 7 LYS 7 6 6 LYS LYS K . n O 1 8 PHE 8 7 7 PHE PHE K . n O 1 9 GLU 9 8 8 GLU GMA K . n O 1 10 NH2 10 9 8 NH2 GMA K . n P 1 1 ACE 1 0 1 ACE 5CR L . n P 1 2 PHE 2 1 1 PHE 5CR L . n P 1 3 LYS 3 2 2 LYS LYS L . n P 1 4 PHE 4 3 3 PHE PHE L . n P 1 5 GLY 5 4 4 GLY GLY L . n P 1 6 PHE 6 5 5 PHE PHE L . n P 1 7 LYS 7 6 6 LYS LYS L . n P 1 8 PHE 8 7 7 PHE PHE L . n P 1 9 GLU 9 8 8 GLU GMA L . n P 1 10 NH2 10 9 8 NH2 GMA L . n Q 1 1 ACE 1 0 1 ACE 5CR Y . n Q 1 2 PHE 2 1 1 PHE 5CR Y . n Q 1 3 LYS 3 2 2 LYS LYS Y . n Q 1 4 PHE 4 3 3 PHE PHE Y . n Q 1 5 GLY 5 4 4 GLY GLY Y . n Q 1 6 PHE 6 5 5 PHE PHE Y . n Q 1 7 LYS 7 6 6 LYS LYS Y . n Q 1 8 PHE 8 7 7 PHE PHE Y . n Q 1 9 GLU 9 8 8 GLU GMA Y . n Q 1 10 NH2 10 9 8 NH2 GMA Y . n R 1 1 ACE 1 0 1 ACE 5CR Z . n R 1 2 PHE 2 1 1 PHE 5CR Z . n R 1 3 LYS 3 2 2 LYS LYS Z . n R 1 4 PHE 4 3 3 PHE PHE Z . n R 1 5 GLY 5 4 4 GLY GLY Z . n R 1 6 PHE 6 5 5 PHE PHE Z . n R 1 7 LYS 7 6 6 LYS LYS Z . n R 1 8 PHE 8 7 7 PHE PHE Z . n R 1 9 GLU 9 8 8 GLU GMA Z . n R 1 10 NH2 10 9 8 NH2 GMA Z . n S 1 1 ACE 1 0 1 ACE 5CR a . n S 1 2 PHE 2 1 1 PHE 5CR a . n S 1 3 LYS 3 2 2 LYS LYS a . n S 1 4 PHE 4 3 3 PHE PHE a . n S 1 5 GLY 5 4 4 GLY GLY a . n S 1 6 PHE 6 5 5 PHE PHE a . n S 1 7 LYS 7 6 6 LYS LYS a . n S 1 8 PHE 8 7 7 PHE PHE a . n S 1 9 GLU 9 8 8 GLU GMA a . n S 1 10 NH2 10 9 8 NH2 GMA a . n T 1 1 ACE 1 0 1 ACE 5CR b . n T 1 2 PHE 2 1 1 PHE 5CR b . n T 1 3 LYS 3 2 2 LYS LYS b . n T 1 4 PHE 4 3 3 PHE PHE b . n T 1 5 GLY 5 4 4 GLY GLY b . n T 1 6 PHE 6 5 5 PHE PHE b . n T 1 7 LYS 7 6 6 LYS LYS b . n T 1 8 PHE 8 7 7 PHE PHE b . n T 1 9 GLU 9 8 8 GLU GMA b . n T 1 10 NH2 10 9 8 NH2 GMA b . n U 1 1 ACE 1 0 1 ACE 5CR M . n U 1 2 PHE 2 1 1 PHE 5CR M . n U 1 3 LYS 3 2 2 LYS LYS M . n U 1 4 PHE 4 3 3 PHE PHE M . n U 1 5 GLY 5 4 4 GLY GLY M . n U 1 6 PHE 6 5 5 PHE PHE M . n U 1 7 LYS 7 6 6 LYS LYS M . n U 1 8 PHE 8 7 7 PHE PHE M . n U 1 9 GLU 9 8 8 GLU GMA M . n U 1 10 NH2 10 9 8 NH2 GMA M . n V 1 1 ACE 1 0 1 ACE 5CR V . n V 1 2 PHE 2 1 1 PHE 5CR V . n V 1 3 LYS 3 2 2 LYS LYS V . n V 1 4 PHE 4 3 3 PHE PHE V . n V 1 5 GLY 5 4 4 GLY GLY V . n V 1 6 PHE 6 5 5 PHE PHE V . n V 1 7 LYS 7 6 6 LYS LYS V . n V 1 8 PHE 8 7 7 PHE PHE V . n V 1 9 GLU 9 8 8 GLU GMA V . n V 1 10 NH2 10 9 8 NH2 GMA V . n W 1 1 ACE 1 0 1 ACE 5CR W . n W 1 2 PHE 2 1 1 PHE 5CR W . n W 1 3 LYS 3 2 2 LYS LYS W . n W 1 4 PHE 4 3 3 PHE PHE W . n W 1 5 GLY 5 4 4 GLY GLY W . n W 1 6 PHE 6 5 5 PHE PHE W . n W 1 7 LYS 7 6 6 LYS LYS W . n W 1 8 PHE 8 7 7 PHE PHE W . n W 1 9 GLU 9 8 8 GLU GMA W . n W 1 10 NH2 10 9 8 NH2 GMA W . n X 1 1 ACE 1 0 1 ACE 5CR X . n X 1 2 PHE 2 1 1 PHE 5CR X . n X 1 3 LYS 3 2 2 LYS LYS X . n X 1 4 PHE 4 3 3 PHE PHE X . n X 1 5 GLY 5 4 4 GLY GLY X . n X 1 6 PHE 6 5 5 PHE PHE X . n X 1 7 LYS 7 6 6 LYS LYS X . n X 1 8 PHE 8 7 7 PHE PHE X . n X 1 9 GLU 9 8 8 GLU GMA X . n X 1 10 NH2 10 9 8 NH2 GMA X . n Y 1 1 ACE 1 0 1 ACE 5CR g . n Y 1 2 PHE 2 1 1 PHE 5CR g . n Y 1 3 LYS 3 2 2 LYS LYS g . n Y 1 4 PHE 4 3 3 PHE PHE g . n Y 1 5 GLY 5 4 4 GLY GLY g . n Y 1 6 PHE 6 5 5 PHE PHE g . n Y 1 7 LYS 7 6 6 LYS LYS g . n Y 1 8 PHE 8 7 7 PHE PHE g . n Y 1 9 GLU 9 8 8 GLU GMA g . n Y 1 10 NH2 10 9 8 NH2 GMA g . n Z 1 1 ACE 1 0 1 ACE 5CR h . n Z 1 2 PHE 2 1 1 PHE 5CR h . n Z 1 3 LYS 3 2 2 LYS LYS h . n Z 1 4 PHE 4 3 3 PHE PHE h . n Z 1 5 GLY 5 4 4 GLY GLY h . n Z 1 6 PHE 6 5 5 PHE PHE h . n Z 1 7 LYS 7 6 6 LYS LYS h . n Z 1 8 PHE 8 7 7 PHE PHE h . n Z 1 9 GLU 9 8 8 GLU GMA h . n Z 1 10 NH2 10 9 8 NH2 GMA h . n AA 1 1 ACE 1 0 1 ACE 5CR i . n AA 1 2 PHE 2 1 1 PHE 5CR i . n AA 1 3 LYS 3 2 2 LYS LYS i . n AA 1 4 PHE 4 3 3 PHE PHE i . n AA 1 5 GLY 5 4 4 GLY GLY i . n AA 1 6 PHE 6 5 5 PHE PHE i . n AA 1 7 LYS 7 6 6 LYS LYS i . n AA 1 8 PHE 8 7 7 PHE PHE i . n AA 1 9 GLU 9 8 8 GLU GMA i . n AA 1 10 NH2 10 9 8 NH2 GMA i . n BA 1 1 ACE 1 0 1 ACE 5CR j . n BA 1 2 PHE 2 1 1 PHE 5CR j . n BA 1 3 LYS 3 2 2 LYS LYS j . n BA 1 4 PHE 4 3 3 PHE PHE j . n BA 1 5 GLY 5 4 4 GLY GLY j . n BA 1 6 PHE 6 5 5 PHE PHE j . n BA 1 7 LYS 7 6 6 LYS LYS j . n BA 1 8 PHE 8 7 7 PHE PHE j . n BA 1 9 GLU 9 8 8 GLU GMA j . n BA 1 10 NH2 10 9 8 NH2 GMA j . n CA 1 1 ACE 1 0 1 ACE 5CR c . n CA 1 2 PHE 2 1 1 PHE 5CR c . n CA 1 3 LYS 3 2 2 LYS LYS c . n CA 1 4 PHE 4 3 3 PHE PHE c . n CA 1 5 GLY 5 4 4 GLY GLY c . n CA 1 6 PHE 6 5 5 PHE PHE c . n CA 1 7 LYS 7 6 6 LYS LYS c . n CA 1 8 PHE 8 7 7 PHE PHE c . n CA 1 9 GLU 9 8 8 GLU GMA c . n CA 1 10 NH2 10 9 8 NH2 GMA c . n DA 1 1 ACE 1 0 1 ACE 5CR e . n DA 1 2 PHE 2 1 1 PHE 5CR e . n DA 1 3 LYS 3 2 2 LYS LYS e . n DA 1 4 PHE 4 3 3 PHE PHE e . n DA 1 5 GLY 5 4 4 GLY GLY e . n DA 1 6 PHE 6 5 5 PHE PHE e . n DA 1 7 LYS 7 6 6 LYS LYS e . n DA 1 8 PHE 8 7 7 PHE PHE e . n DA 1 9 GLU 9 8 8 GLU GMA e . n DA 1 10 NH2 10 9 8 NH2 GMA e . n EA 1 1 ACE 1 0 1 ACE 5CR f . n EA 1 2 PHE 2 1 1 PHE 5CR f . n EA 1 3 LYS 3 2 2 LYS LYS f . n EA 1 4 PHE 4 3 3 PHE PHE f . n EA 1 5 GLY 5 4 4 GLY GLY f . n EA 1 6 PHE 6 5 5 PHE PHE f . n EA 1 7 LYS 7 6 6 LYS LYS f . n EA 1 8 PHE 8 7 7 PHE PHE f . n EA 1 9 GLU 9 8 8 GLU GMA f . n EA 1 10 NH2 10 9 8 NH2 GMA f . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9PD7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9PD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9PD7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9PD7 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 2624 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.827 ? 3392 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 14.015 ? 352 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.053 ? 224 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.001 ? 448 ? f_plane_restr ? ? ? # _struct.entry_id 9PD7 _struct.title 'YG18 peptide - ribbon' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9PD7 _struct_keywords.text 'Nanomateiral, short-peptides, cross-beta, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? Y N N 1 ? Z N N 1 ? AA N N 1 ? BA N N 1 ? CA N N 1 ? DA N N 1 ? EA N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9PD7 _struct_ref.pdbx_db_accession 9PD7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9PD7 N 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 2 1 9PD7 O 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 3 1 9PD7 P 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 4 1 9PD7 Q 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 5 1 9PD7 E 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 6 1 9PD7 F 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 7 1 9PD7 G 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 8 1 9PD7 H 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 9 1 9PD7 R 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 10 1 9PD7 S 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 11 1 9PD7 T 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 12 1 9PD7 U 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 13 1 9PD7 I 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 14 1 9PD7 J 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 15 1 9PD7 K 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 16 1 9PD7 L 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 17 1 9PD7 Y 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 18 1 9PD7 Z 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 19 1 9PD7 a 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 20 1 9PD7 b 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 21 1 9PD7 M 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 22 1 9PD7 V 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 23 1 9PD7 W 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 24 1 9PD7 X 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 25 1 9PD7 g 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 26 1 9PD7 h 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 27 1 9PD7 i 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 28 1 9PD7 j 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 29 1 9PD7 c 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 30 1 9PD7 e 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 31 1 9PD7 f 1 ? 10 ? 9PD7 0 ? 9 ? 0 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 31-meric _pdbx_struct_assembly.oligomeric_count 31 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PHE 2 N ? ? N ACE 0 N PHE 1 1_555 ? ? ? ? ? ? ? 1.462 sing ? covale2 covale both ? A GLU 9 C ? ? ? 1_555 A NH2 10 N ? ? N GLU 8 N NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B PHE 2 N ? ? O ACE 0 O PHE 1 1_555 ? ? ? ? ? ? ? 1.461 sing ? covale4 covale both ? B GLU 9 C ? ? ? 1_555 B NH2 10 N ? ? O GLU 8 O NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale5 covale both ? C ACE 1 C ? ? ? 1_555 C PHE 2 N ? ? P ACE 0 P PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale6 covale both ? C GLU 9 C ? ? ? 1_555 C NH2 10 N ? ? P GLU 8 P NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale7 covale both ? D ACE 1 C ? ? ? 1_555 D PHE 2 N ? ? Q ACE 0 Q PHE 1 1_555 ? ? ? ? ? ? ? 1.464 sing ? covale8 covale both ? D GLU 9 C ? ? ? 1_555 D NH2 10 N ? ? Q GLU 8 Q NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale9 covale both ? E ACE 1 C ? ? ? 1_555 E PHE 2 N ? ? E ACE 0 E PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale10 covale both ? E GLU 9 C ? ? ? 1_555 E NH2 10 N ? ? E GLU 8 E NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale11 covale both ? F ACE 1 C ? ? ? 1_555 F PHE 2 N ? ? F ACE 0 F PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale12 covale both ? F GLU 9 C ? ? ? 1_555 F NH2 10 N ? ? F GLU 8 F NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale13 covale both ? G ACE 1 C ? ? ? 1_555 G PHE 2 N ? ? G ACE 0 G PHE 1 1_555 ? ? ? ? ? ? ? 1.464 sing ? covale14 covale both ? G GLU 9 C ? ? ? 1_555 G NH2 10 N ? ? G GLU 8 G NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale15 covale both ? H ACE 1 C ? ? ? 1_555 H PHE 2 N ? ? H ACE 0 H PHE 1 1_555 ? ? ? ? ? ? ? 1.456 sing ? covale16 covale both ? H GLU 9 C ? ? ? 1_555 H NH2 10 N ? ? H GLU 8 H NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale17 covale both ? I ACE 1 C ? ? ? 1_555 I PHE 2 N ? ? R ACE 0 R PHE 1 1_555 ? ? ? ? ? ? ? 1.462 sing ? covale18 covale both ? I GLU 9 C ? ? ? 1_555 I NH2 10 N ? ? R GLU 8 R NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale19 covale both ? J ACE 1 C ? ? ? 1_555 J PHE 2 N ? ? S ACE 0 S PHE 1 1_555 ? ? ? ? ? ? ? 1.461 sing ? covale20 covale both ? J GLU 9 C ? ? ? 1_555 J NH2 10 N ? ? S GLU 8 S NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale21 covale both ? K ACE 1 C ? ? ? 1_555 K PHE 2 N ? ? T ACE 0 T PHE 1 1_555 ? ? ? ? ? ? ? 1.455 sing ? covale22 covale both ? K GLU 9 C ? ? ? 1_555 K NH2 10 N ? ? T GLU 8 T NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale23 covale both ? L ACE 1 C ? ? ? 1_555 L PHE 2 N ? ? U ACE 0 U PHE 1 1_555 ? ? ? ? ? ? ? 1.464 sing ? covale24 covale both ? L GLU 9 C ? ? ? 1_555 L NH2 10 N ? ? U GLU 8 U NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale25 covale both ? M ACE 1 C ? ? ? 1_555 M PHE 2 N ? ? I ACE 0 I PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale26 covale both ? M GLU 9 C ? ? ? 1_555 M NH2 10 N ? ? I GLU 8 I NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale27 covale both ? N ACE 1 C ? ? ? 1_555 N PHE 2 N ? ? J ACE 0 J PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale28 covale both ? N GLU 9 C ? ? ? 1_555 N NH2 10 N ? ? J GLU 8 J NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale29 covale both ? O ACE 1 C ? ? ? 1_555 O PHE 2 N ? ? K ACE 0 K PHE 1 1_555 ? ? ? ? ? ? ? 1.463 sing ? covale30 covale both ? O GLU 9 C ? ? ? 1_555 O NH2 10 N ? ? K GLU 8 K NH2 9 1_555 ? ? ? ? ? ? ? 1.380 sing ? covale31 covale both ? P ACE 1 C ? ? ? 1_555 P PHE 2 N ? ? L ACE 0 L PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale32 covale both ? P GLU 9 C ? ? ? 1_555 P NH2 10 N ? ? L GLU 8 L NH2 9 1_555 ? ? ? ? ? ? ? 1.380 sing ? covale33 covale both ? Q ACE 1 C ? ? ? 1_555 Q PHE 2 N ? ? Y ACE 0 Y PHE 1 1_555 ? ? ? ? ? ? ? 1.462 sing ? covale34 covale both ? Q GLU 9 C ? ? ? 1_555 Q NH2 10 N ? ? Y GLU 8 Y NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale35 covale both ? R ACE 1 C ? ? ? 1_555 R PHE 2 N ? ? Z ACE 0 Z PHE 1 1_555 ? ? ? ? ? ? ? 1.461 sing ? covale36 covale both ? R GLU 9 C ? ? ? 1_555 R NH2 10 N ? ? Z GLU 8 Z NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale37 covale both ? S ACE 1 C ? ? ? 1_555 S PHE 2 N ? ? a ACE 0 a PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale38 covale both ? S GLU 9 C ? ? ? 1_555 S NH2 10 N ? ? a GLU 8 a NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale39 covale both ? T ACE 1 C ? ? ? 1_555 T PHE 2 N ? ? b ACE 0 b PHE 1 1_555 ? ? ? ? ? ? ? 1.463 sing ? covale40 covale both ? T GLU 9 C ? ? ? 1_555 T NH2 10 N ? ? b GLU 8 b NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale41 covale both ? U ACE 1 C ? ? ? 1_555 U PHE 2 N ? ? M ACE 0 M PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale42 covale both ? U GLU 9 C ? ? ? 1_555 U NH2 10 N ? ? M GLU 8 M NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale43 covale both ? V ACE 1 C ? ? ? 1_555 V PHE 2 N ? ? V ACE 0 V PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale44 covale both ? V GLU 9 C ? ? ? 1_555 V NH2 10 N ? ? V GLU 8 V NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale45 covale both ? W ACE 1 C ? ? ? 1_555 W PHE 2 N ? ? W ACE 0 W PHE 1 1_555 ? ? ? ? ? ? ? 1.463 sing ? covale46 covale both ? W GLU 9 C ? ? ? 1_555 W NH2 10 N ? ? W GLU 8 W NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale47 covale both ? X ACE 1 C ? ? ? 1_555 X PHE 2 N ? ? X ACE 0 X PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale48 covale both ? X GLU 9 C ? ? ? 1_555 X NH2 10 N ? ? X GLU 8 X NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale49 covale both ? Y ACE 1 C ? ? ? 1_555 Y PHE 2 N ? ? g ACE 0 g PHE 1 1_555 ? ? ? ? ? ? ? 1.463 sing ? covale50 covale both ? Y GLU 9 C ? ? ? 1_555 Y NH2 10 N ? ? g GLU 8 g NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale51 covale both ? Z ACE 1 C ? ? ? 1_555 Z PHE 2 N ? ? h ACE 0 h PHE 1 1_555 ? ? ? ? ? ? ? 1.463 sing ? covale52 covale both ? Z GLU 9 C ? ? ? 1_555 Z NH2 10 N ? ? h GLU 8 h NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale53 covale both ? AA ACE 1 C ? ? ? 1_555 AA PHE 2 N ? ? i ACE 0 i PHE 1 1_555 ? ? ? ? ? ? ? 1.455 sing ? covale54 covale both ? AA GLU 9 C ? ? ? 1_555 AA NH2 10 N ? ? i GLU 8 i NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale55 covale both ? BA ACE 1 C ? ? ? 1_555 BA PHE 2 N ? ? j ACE 0 j PHE 1 1_555 ? ? ? ? ? ? ? 1.464 sing ? covale56 covale both ? BA GLU 9 C ? ? ? 1_555 BA NH2 10 N ? ? j GLU 8 j NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale57 covale both ? CA ACE 1 C ? ? ? 1_555 CA PHE 2 N ? ? c ACE 0 c PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale58 covale both ? CA GLU 9 C ? ? ? 1_555 CA NH2 10 N ? ? c GLU 8 c NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale59 covale both ? DA ACE 1 C ? ? ? 1_555 DA PHE 2 N ? ? e ACE 0 e PHE 1 1_555 ? ? ? ? ? ? ? 1.462 sing ? covale60 covale both ? DA GLU 9 C ? ? ? 1_555 DA NH2 10 N ? ? e GLU 8 e NH2 9 1_555 ? ? ? ? ? ? ? 1.380 sing ? covale61 covale both ? EA ACE 1 C ? ? ? 1_555 EA PHE 2 N ? ? f ACE 0 f PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale62 covale both ? EA GLU 9 C ? ? ? 1_555 EA NH2 10 N ? ? f GLU 8 f NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE A 1 ? PHE A 2 ? ACE N 0 ? 1_555 PHE N 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 2 ACE AA 1 ? PHE AA 2 ? ACE i 0 ? 1_555 PHE i 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 3 ACE B 1 ? PHE B 2 ? ACE O 0 ? 1_555 PHE O 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 4 ACE BA 1 ? PHE BA 2 ? ACE j 0 ? 1_555 PHE j 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 5 ACE C 1 ? PHE C 2 ? ACE P 0 ? 1_555 PHE P 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 6 ACE CA 1 ? PHE CA 2 ? ACE c 0 ? 1_555 PHE c 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 7 ACE D 1 ? PHE D 2 ? ACE Q 0 ? 1_555 PHE Q 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 8 ACE DA 1 ? PHE DA 2 ? ACE e 0 ? 1_555 PHE e 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 9 ACE E 1 ? PHE E 2 ? ACE E 0 ? 1_555 PHE E 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 10 ACE EA 1 ? PHE EA 2 ? ACE f 0 ? 1_555 PHE f 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 11 ACE F 1 ? PHE F 2 ? ACE F 0 ? 1_555 PHE F 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 12 ACE G 1 ? PHE G 2 ? ACE G 0 ? 1_555 PHE G 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 13 ACE H 1 ? PHE H 2 ? ACE H 0 ? 1_555 PHE H 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 14 ACE I 1 ? PHE I 2 ? ACE R 0 ? 1_555 PHE R 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 15 ACE J 1 ? PHE J 2 ? ACE S 0 ? 1_555 PHE S 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 16 ACE K 1 ? PHE K 2 ? ACE T 0 ? 1_555 PHE T 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 17 ACE L 1 ? PHE L 2 ? ACE U 0 ? 1_555 PHE U 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 18 ACE M 1 ? PHE M 2 ? ACE I 0 ? 1_555 PHE I 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 19 ACE N 1 ? PHE N 2 ? ACE J 0 ? 1_555 PHE J 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 20 ACE O 1 ? PHE O 2 ? ACE K 0 ? 1_555 PHE K 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 21 ACE P 1 ? PHE P 2 ? ACE L 0 ? 1_555 PHE L 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 22 ACE Q 1 ? PHE Q 2 ? ACE Y 0 ? 1_555 PHE Y 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 23 ACE R 1 ? PHE R 2 ? ACE Z 0 ? 1_555 PHE Z 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 24 ACE S 1 ? PHE S 2 ? ACE a 0 ? 1_555 PHE a 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 25 ACE T 1 ? PHE T 2 ? ACE b 0 ? 1_555 PHE b 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 26 ACE U 1 ? PHE U 2 ? ACE M 0 ? 1_555 PHE M 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 27 ACE V 1 ? PHE V 2 ? ACE V 0 ? 1_555 PHE V 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 28 ACE W 1 ? PHE W 2 ? ACE W 0 ? 1_555 PHE W 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 29 ACE X 1 ? PHE X 2 ? ACE X 0 ? 1_555 PHE X 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 30 ACE Y 1 ? PHE Y 2 ? ACE g 0 ? 1_555 PHE g 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 31 ACE Z 1 ? PHE Z 2 ? ACE h 0 ? 1_555 PHE h 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 32 NH2 A 10 ? GLU A 9 ? NH2 N 9 ? 1_555 GLU N 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 33 NH2 AA 10 ? GLU AA 9 ? NH2 i 9 ? 1_555 GLU i 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 34 NH2 B 10 ? GLU B 9 ? NH2 O 9 ? 1_555 GLU O 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 35 NH2 BA 10 ? GLU BA 9 ? NH2 j 9 ? 1_555 GLU j 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 36 NH2 C 10 ? GLU C 9 ? NH2 P 9 ? 1_555 GLU P 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 37 NH2 CA 10 ? GLU CA 9 ? NH2 c 9 ? 1_555 GLU c 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 38 NH2 D 10 ? GLU D 9 ? NH2 Q 9 ? 1_555 GLU Q 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 39 NH2 DA 10 ? GLU DA 9 ? NH2 e 9 ? 1_555 GLU e 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 40 NH2 E 10 ? GLU E 9 ? NH2 E 9 ? 1_555 GLU E 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 41 NH2 EA 10 ? GLU EA 9 ? NH2 f 9 ? 1_555 GLU f 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 42 NH2 F 10 ? GLU F 9 ? NH2 F 9 ? 1_555 GLU F 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 43 NH2 G 10 ? GLU G 9 ? NH2 G 9 ? 1_555 GLU G 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 44 NH2 H 10 ? GLU H 9 ? NH2 H 9 ? 1_555 GLU H 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 45 NH2 I 10 ? GLU I 9 ? NH2 R 9 ? 1_555 GLU R 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 46 NH2 J 10 ? GLU J 9 ? NH2 S 9 ? 1_555 GLU S 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 47 NH2 K 10 ? GLU K 9 ? NH2 T 9 ? 1_555 GLU T 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 48 NH2 L 10 ? GLU L 9 ? NH2 U 9 ? 1_555 GLU U 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 49 NH2 M 10 ? GLU M 9 ? NH2 I 9 ? 1_555 GLU I 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 50 NH2 N 10 ? GLU N 9 ? NH2 J 9 ? 1_555 GLU J 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 51 NH2 O 10 ? GLU O 9 ? NH2 K 9 ? 1_555 GLU K 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 52 NH2 P 10 ? GLU P 9 ? NH2 L 9 ? 1_555 GLU L 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 53 NH2 Q 10 ? GLU Q 9 ? NH2 Y 9 ? 1_555 GLU Y 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 54 NH2 R 10 ? GLU R 9 ? NH2 Z 9 ? 1_555 GLU Z 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 55 NH2 S 10 ? GLU S 9 ? NH2 a 9 ? 1_555 GLU a 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 56 NH2 T 10 ? GLU T 9 ? NH2 b 9 ? 1_555 GLU b 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 57 NH2 U 10 ? GLU U 9 ? NH2 M 9 ? 1_555 GLU M 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 58 NH2 V 10 ? GLU V 9 ? NH2 V 9 ? 1_555 GLU V 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 59 NH2 W 10 ? GLU W 9 ? NH2 W 9 ? 1_555 GLU W 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 60 NH2 X 10 ? GLU X 9 ? NH2 X 9 ? 1_555 GLU X 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 61 NH2 Y 10 ? GLU Y 9 ? NH2 g 9 ? 1_555 GLU g 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 62 NH2 Z 10 ? GLU Z 9 ? NH2 h 9 ? 1_555 GLU h 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA1 7 8 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 3 ? LYS A 7 ? LYS N 2 LYS N 6 AA1 2 LYS B 3 ? PHE B 8 ? LYS O 2 PHE O 7 AA1 3 LYS I 3 ? PHE I 8 ? LYS R 2 PHE R 7 AA1 4 LYS J 3 ? PHE J 8 ? LYS S 2 PHE S 7 AA1 5 LYS Q 3 ? PHE Q 8 ? LYS Y 2 PHE Y 7 AA1 6 LYS R 3 ? PHE R 8 ? LYS Z 2 PHE Z 7 AA1 7 PHE Y 6 ? PHE Y 8 ? PHE g 5 PHE g 7 AA1 8 PHE Z 6 ? PHE Z 8 ? PHE h 5 PHE h 7 AA2 1 PHE D 6 ? LYS D 7 ? PHE Q 5 LYS Q 6 AA2 2 PHE K 6 ? LYS K 7 ? PHE T 5 LYS T 6 AA2 3 PHE L 6 ? LYS L 7 ? PHE U 5 LYS U 6 AA2 4 PHE S 6 ? LYS S 7 ? PHE a 5 LYS a 6 AA2 5 PHE T 6 ? LYS T 7 ? PHE b 5 LYS b 6 AA2 6 PHE AA 6 ? LYS AA 7 ? PHE i 5 LYS i 6 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 6 ? N PHE N 5 O GLY B 5 ? O GLY O 4 AA1 2 3 N PHE B 6 ? N PHE O 5 O GLY I 5 ? O GLY R 4 AA1 3 4 N PHE I 6 ? N PHE R 5 O GLY J 5 ? O GLY S 4 AA1 4 5 N PHE J 6 ? N PHE S 5 O GLY Q 5 ? O GLY Y 4 AA1 5 6 N PHE Q 6 ? N PHE Y 5 O GLY R 5 ? O GLY Z 4 AA1 6 7 N PHE R 6 ? N PHE Z 5 O LYS Y 7 ? O LYS g 6 AA1 7 8 N PHE Y 8 ? N PHE g 7 O LYS Z 7 ? O LYS h 6 AA2 1 2 N PHE D 6 ? N PHE Q 5 O LYS K 7 ? O LYS T 6 AA2 2 3 N PHE K 6 ? N PHE T 5 O LYS L 7 ? O LYS U 6 AA2 3 4 N PHE L 6 ? N PHE U 5 O LYS S 7 ? O LYS a 6 AA2 4 5 N PHE S 6 ? N PHE a 5 O LYS T 7 ? O LYS b 6 AA2 5 6 N PHE T 6 ? N PHE b 5 O LYS AA 7 ? O LYS i 6 # _pdbx_entry_details.entry_id 9PD7 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS P 2 ? ? -165.18 5.59 2 1 PHE P 7 ? ? -52.39 90.56 3 1 LYS G 2 ? ? -109.81 63.95 4 1 PHE G 7 ? ? 55.49 72.36 5 1 LYS T 2 ? ? -153.88 27.11 6 1 PHE T 7 ? ? -53.48 81.45 7 1 PHE K 7 ? ? 56.45 74.17 8 1 LYS a 2 ? ? -154.87 20.52 9 1 PHE a 7 ? ? -54.06 81.83 10 1 LYS W 2 ? ? -118.40 56.74 11 1 PHE W 7 ? ? 55.96 76.22 12 1 PHE h 7 ? ? -109.94 55.28 13 1 LYS i 2 ? ? -151.59 43.14 14 1 PHE i 7 ? ? -54.62 82.94 15 1 PHE e 7 ? ? 54.75 76.75 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9PD7 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9PD7 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 85601 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'helical oligomer of short-peptides' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9PD7 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9PD7 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9PD7 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 GLU N N N N 8 GLU CA C N S 9 GLU C C N N 10 GLU O O N N 11 GLU CB C N N 12 GLU CG C N N 13 GLU CD C N N 14 GLU OE1 O N N 15 GLU OE2 O N N 16 GLU OXT O N N 17 GLU H H N N 18 GLU H2 H N N 19 GLU HA H N N 20 GLU HB2 H N N 21 GLU HB3 H N N 22 GLU HG2 H N N 23 GLU HG3 H N N 24 GLU HE2 H N N 25 GLU HXT H N N 26 GLY N N N N 27 GLY CA C N N 28 GLY C C N N 29 GLY O O N N 30 GLY OXT O N N 31 GLY H H N N 32 GLY H2 H N N 33 GLY HA2 H N N 34 GLY HA3 H N N 35 GLY HXT H N N 36 LYS N N N N 37 LYS CA C N S 38 LYS C C N N 39 LYS O O N N 40 LYS CB C N N 41 LYS CG C N N 42 LYS CD C N N 43 LYS CE C N N 44 LYS NZ N N N 45 LYS OXT O N N 46 LYS H H N N 47 LYS H2 H N N 48 LYS HA H N N 49 LYS HB2 H N N 50 LYS HB3 H N N 51 LYS HG2 H N N 52 LYS HG3 H N N 53 LYS HD2 H N N 54 LYS HD3 H N N 55 LYS HE2 H N N 56 LYS HE3 H N N 57 LYS HZ1 H N N 58 LYS HZ2 H N N 59 LYS HZ3 H N N 60 LYS HXT H N N 61 NH2 N N N N 62 NH2 HN1 H N N 63 NH2 HN2 H N N 64 PHE N N N N 65 PHE CA C N S 66 PHE C C N N 67 PHE O O N N 68 PHE CB C N N 69 PHE CG C Y N 70 PHE CD1 C Y N 71 PHE CD2 C Y N 72 PHE CE1 C Y N 73 PHE CE2 C Y N 74 PHE CZ C Y N 75 PHE OXT O N N 76 PHE H H N N 77 PHE H2 H N N 78 PHE HA H N N 79 PHE HB2 H N N 80 PHE HB3 H N N 81 PHE HD1 H N N 82 PHE HD2 H N N 83 PHE HE1 H N N 84 PHE HE2 H N N 85 PHE HZ H N N 86 PHE HXT H N N 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 GLU N CA sing N N 7 GLU N H sing N N 8 GLU N H2 sing N N 9 GLU CA C sing N N 10 GLU CA CB sing N N 11 GLU CA HA sing N N 12 GLU C O doub N N 13 GLU C OXT sing N N 14 GLU CB CG sing N N 15 GLU CB HB2 sing N N 16 GLU CB HB3 sing N N 17 GLU CG CD sing N N 18 GLU CG HG2 sing N N 19 GLU CG HG3 sing N N 20 GLU CD OE1 doub N N 21 GLU CD OE2 sing N N 22 GLU OE2 HE2 sing N N 23 GLU OXT HXT sing N N 24 GLY N CA sing N N 25 GLY N H sing N N 26 GLY N H2 sing N N 27 GLY CA C sing N N 28 GLY CA HA2 sing N N 29 GLY CA HA3 sing N N 30 GLY C O doub N N 31 GLY C OXT sing N N 32 GLY OXT HXT sing N N 33 LYS N CA sing N N 34 LYS N H sing N N 35 LYS N H2 sing N N 36 LYS CA C sing N N 37 LYS CA CB sing N N 38 LYS CA HA sing N N 39 LYS C O doub N N 40 LYS C OXT sing N N 41 LYS CB CG sing N N 42 LYS CB HB2 sing N N 43 LYS CB HB3 sing N N 44 LYS CG CD sing N N 45 LYS CG HG2 sing N N 46 LYS CG HG3 sing N N 47 LYS CD CE sing N N 48 LYS CD HD2 sing N N 49 LYS CD HD3 sing N N 50 LYS CE NZ sing N N 51 LYS CE HE2 sing N N 52 LYS CE HE3 sing N N 53 LYS NZ HZ1 sing N N 54 LYS NZ HZ2 sing N N 55 LYS NZ HZ3 sing N N 56 LYS OXT HXT sing N N 57 NH2 N HN1 sing N N 58 NH2 N HN2 sing N N 59 PHE N CA sing N N 60 PHE N H sing N N 61 PHE N H2 sing N N 62 PHE CA C sing N N 63 PHE CA CB sing N N 64 PHE CA HA sing N N 65 PHE C O doub N N 66 PHE C OXT sing N N 67 PHE CB CG sing N N 68 PHE CB HB2 sing N N 69 PHE CB HB3 sing N N 70 PHE CG CD1 doub Y N 71 PHE CG CD2 sing Y N 72 PHE CD1 CE1 sing Y N 73 PHE CD1 HD1 sing N N 74 PHE CD2 CE2 doub Y N 75 PHE CD2 HD2 sing N N 76 PHE CE1 CZ doub Y N 77 PHE CE1 HE1 sing N N 78 PHE CE2 CZ sing Y N 79 PHE CE2 HE2 sing N N 80 PHE CZ HZ sing N N 81 PHE OXT HXT sing N N 82 # _em_admin.current_status REL _em_admin.deposition_date 2025-06-30 _em_admin.deposition_site RCSB _em_admin.entry_id 9PD7 _em_admin.last_update 2026-07-08 _em_admin.map_release_date 2026-07-08 _em_admin.title 'YG18 peptide - ribbon' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -16.67 _em_helical_entity.axial_rise_per_subunit 8.14 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487: ? 'IMAGE ACQUISITION' ? 3 1 1 1 ? ? ? MASKING ? 4 1 1 1 ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? ? OTHER ? 9 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 'NSF 2304854' 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM122510 2 # _atom_sites.entry_id 9PD7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #