HEADER VIRAL PROTEIN, HYDROLASE 04-JUL-25 9PFH TITLE CRYSTAL STRUCTURE OF SARS-COV-2 MPRO MUTANT P132H WITH C5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE NSP5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3264-3569; COMPND 5 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 6 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 7 EC: 3.4.22.69; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MUTANT, INHIBITOR, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.KENWARD,W.A.MOSIMANN,L.J.WORRALL,N.C.J.STRYNADKA REVDAT 2 26-NOV-25 9PFH 1 JRNL REVDAT 1 16-JUL-25 9PFH 0 JRNL AUTH N.M.DESCHENES,J.PEREZ-VARGAS,Z.ZHONG,M.THOMAS,C.KENWARD, JRNL AUTH 2 W.A.MOSIMANN,L.J.WORRALL,N.WAGLECHNER,A.X.LI,F.MAGUIRE, JRNL AUTH 3 P.AFTANAS,J.R.SMITH,J.LIM,R.N.YOUNG,A.CHERKASOV,L.FAROOQI, JRNL AUTH 4 A.MOINUDDIN,L.SIDDIQI,I.MALIK,M.LEFEBVRE,M.PAETZEL, JRNL AUTH 5 N.C.J.STRYNADKA,F.JEAN,A.MCGEER,R.A.KOZAK JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 TREATMENT-EMERGENT NIRMATRELVIR RESISTANCE MUTATIONS AT LOW JRNL TITL 3 FREQUENCIES IN THE MAIN PROTEASE (MPRO) REVEALS A UNIQUE JRNL TITL 4 EVOLUTIONARY ROUTE FOR SARS-COV-2 TO GAIN RESISTANCE. JRNL REF J.INFECT.DIS. V. 232 E789 2025 JRNL REFN ESSN 1537-6613 JRNL PMID 40459233 JRNL DOI 10.1093/INFDIS/JIAF294 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 56.7 REMARK 3 NUMBER OF REFLECTIONS : 11181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3400 - 5.3700 1.00 2343 263 0.2078 0.2446 REMARK 3 2 5.3700 - 4.2600 1.00 2232 249 0.1971 0.2742 REMARK 3 3 4.2600 - 3.7200 0.99 2183 245 0.2197 0.2845 REMARK 3 4 3.7200 - 3.3800 0.79 1737 184 0.2557 0.3157 REMARK 3 5 3.3800 - 3.1400 0.41 909 103 0.2888 0.3428 REMARK 3 6 3.1400 - 2.9600 0.18 410 38 0.2942 0.3607 REMARK 3 7 2.9600 - 2.8100 0.09 202 15 0.2999 0.6122 REMARK 3 8 2.8100 - 2.6900 0.03 62 6 0.3185 0.3889 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4854 REMARK 3 ANGLE : 0.744 6604 REMARK 3 CHIRALITY : 0.042 736 REMARK 3 PLANARITY : 0.006 861 REMARK 3 DIHEDRAL : 5.686 672 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.454 -6.770 17.881 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.3676 REMARK 3 T33: -0.1543 T12: -0.0347 REMARK 3 T13: -0.0680 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.2296 L22: 1.6639 REMARK 3 L33: 2.3310 L12: -0.3456 REMARK 3 L13: -1.0945 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.3687 S12: -0.0743 S13: -0.2828 REMARK 3 S21: -0.3697 S22: 0.2727 S23: -0.1493 REMARK 3 S31: -0.2718 S32: -0.2168 S33: -0.3578 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 44:100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.633 -7.381 22.005 REMARK 3 T TENSOR REMARK 3 T11: 0.2923 T22: 0.6434 REMARK 3 T33: 0.4710 T12: -0.0944 REMARK 3 T13: 0.0054 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 1.1227 L22: 1.1821 REMARK 3 L33: 3.6137 L12: -0.4379 REMARK 3 L13: -1.1341 L23: 0.1698 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: 0.3995 S13: 0.0225 REMARK 3 S21: -0.3826 S22: 0.1868 S23: 0.2340 REMARK 3 S31: -0.4528 S32: -1.0425 S33: 0.1279 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 101:180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.379 -5.878 24.869 REMARK 3 T TENSOR REMARK 3 T11: -0.1141 T22: -0.0135 REMARK 3 T33: 0.1855 T12: 0.1769 REMARK 3 T13: 0.0560 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.1366 L22: 1.2570 REMARK 3 L33: 2.9880 L12: -0.1482 REMARK 3 L13: 1.1226 L23: -0.7763 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: -0.2506 S13: 0.3761 REMARK 3 S21: 0.1564 S22: 0.1883 S23: 0.2869 REMARK 3 S31: 0.8201 S32: -0.5570 S33: -0.1315 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 181:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.415 -3.309 33.808 REMARK 3 T TENSOR REMARK 3 T11: -0.1229 T22: 0.3520 REMARK 3 T33: 0.4325 T12: 0.0888 REMARK 3 T13: -0.0067 T23: 0.0484 REMARK 3 L TENSOR REMARK 3 L11: 0.0317 L22: 0.1724 REMARK 3 L33: 1.0962 L12: -0.0644 REMARK 3 L13: 0.1758 L23: -0.4464 REMARK 3 S TENSOR REMARK 3 S11: -0.2372 S12: -0.6870 S13: 0.1320 REMARK 3 S21: -0.1291 S22: 0.1598 S23: -0.0047 REMARK 3 S31: 0.2438 S32: 0.3782 S33: -0.0874 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 214:234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.601 -6.582 36.582 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.6157 REMARK 3 T33: 0.3935 T12: -0.0668 REMARK 3 T13: -0.1314 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.3648 L22: 0.1021 REMARK 3 L33: 1.4776 L12: -0.0901 REMARK 3 L13: -0.9838 L23: -0.1796 REMARK 3 S TENSOR REMARK 3 S11: 0.3013 S12: -0.3122 S13: -0.7926 REMARK 3 S21: -0.0400 S22: -0.0085 S23: -0.1086 REMARK 3 S31: 0.1828 S32: 0.9862 S33: 0.2764 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 235:274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.633 -9.190 36.852 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.3244 REMARK 3 T33: 0.4132 T12: -0.0044 REMARK 3 T13: 0.1397 T23: 0.1203 REMARK 3 L TENSOR REMARK 3 L11: 2.2146 L22: 2.8846 REMARK 3 L33: 2.0369 L12: -0.4656 REMARK 3 L13: 0.4731 L23: 0.5894 REMARK 3 S TENSOR REMARK 3 S11: 0.4794 S12: -0.1590 S13: -0.6403 REMARK 3 S21: 0.2699 S22: -0.2773 S23: -0.3297 REMARK 3 S31: 0.2821 S32: -0.1780 S33: 0.0371 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 275:300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.761 -4.145 25.177 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.3484 REMARK 3 T33: 0.3297 T12: 0.0390 REMARK 3 T13: -0.0370 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 1.8034 L22: 2.3071 REMARK 3 L33: 2.4609 L12: -0.6915 REMARK 3 L13: 0.4190 L23: 0.5054 REMARK 3 S TENSOR REMARK 3 S11: -0.4893 S12: 0.2361 S13: 0.2258 REMARK 3 S21: -0.4038 S22: 0.2004 S23: 0.5604 REMARK 3 S31: -0.2068 S32: 0.5625 S33: 0.1404 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.130 -10.967 1.311 REMARK 3 T TENSOR REMARK 3 T11: 0.3661 T22: 0.2424 REMARK 3 T33: 0.3908 T12: 0.0931 REMARK 3 T13: -0.0302 T23: -0.0770 REMARK 3 L TENSOR REMARK 3 L11: 2.1425 L22: 0.8419 REMARK 3 L33: 1.3826 L12: 0.0522 REMARK 3 L13: -0.9424 L23: -0.3799 REMARK 3 S TENSOR REMARK 3 S11: -0.3248 S12: -0.1573 S13: -0.6586 REMARK 3 S21: 0.1621 S22: 0.1502 S23: -0.0643 REMARK 3 S31: 0.8200 S32: 0.3465 S33: 0.0345 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 44:100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.921 -17.400 -9.652 REMARK 3 T TENSOR REMARK 3 T11: 0.8074 T22: 0.4061 REMARK 3 T33: 0.5700 T12: 0.1784 REMARK 3 T13: -0.0658 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.3882 L22: 2.2607 REMARK 3 L33: 3.3443 L12: 0.2131 REMARK 3 L13: -1.4035 L23: 0.5435 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: -0.4140 S13: -1.1259 REMARK 3 S21: -0.5780 S22: 0.0712 S23: -0.4332 REMARK 3 S31: 1.1475 S32: 1.0714 S33: 0.2633 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 101:180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.093 -3.079 3.695 REMARK 3 T TENSOR REMARK 3 T11: 0.1739 T22: 0.3418 REMARK 3 T33: 0.3007 T12: 0.0221 REMARK 3 T13: 0.0512 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 1.7164 L22: 1.5964 REMARK 3 L33: 3.8753 L12: 0.9699 REMARK 3 L13: 0.2259 L23: -0.6284 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: 0.2579 S13: -0.2590 REMARK 3 S21: -0.3471 S22: -0.0619 S23: 0.1430 REMARK 3 S31: 0.4915 S32: 0.0815 S33: 0.1424 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 181:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.588 6.479 7.685 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.2588 REMARK 3 T33: 0.5459 T12: -0.1137 REMARK 3 T13: 0.0030 T23: 0.1345 REMARK 3 L TENSOR REMARK 3 L11: 1.6115 L22: 1.6208 REMARK 3 L33: 2.8475 L12: 0.8646 REMARK 3 L13: 0.8677 L23: 0.2137 REMARK 3 S TENSOR REMARK 3 S11: -0.2485 S12: 0.2706 S13: -0.4502 REMARK 3 S21: 0.3663 S22: 0.1275 S23: 0.5429 REMARK 3 S31: 0.1086 S32: 0.5842 S33: -0.2777 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 214:234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.459 25.179 19.378 REMARK 3 T TENSOR REMARK 3 T11: 0.6197 T22: 0.5543 REMARK 3 T33: 0.4222 T12: -0.1808 REMARK 3 T13: 0.0991 T23: -0.0737 REMARK 3 L TENSOR REMARK 3 L11: 1.6066 L22: 2.4205 REMARK 3 L33: 0.6530 L12: -0.3678 REMARK 3 L13: 0.4680 L23: 0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.1163 S12: 0.0477 S13: 0.4695 REMARK 3 S21: -0.3662 S22: -0.0550 S23: 0.2789 REMARK 3 S31: -0.3343 S32: 0.1211 S33: 0.1909 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 235:274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.818 21.921 13.819 REMARK 3 T TENSOR REMARK 3 T11: 0.7388 T22: 0.4955 REMARK 3 T33: 0.6032 T12: -0.0558 REMARK 3 T13: -0.0284 T23: -0.0869 REMARK 3 L TENSOR REMARK 3 L11: 3.7432 L22: 2.0643 REMARK 3 L33: 5.2640 L12: -0.3841 REMARK 3 L13: -1.8636 L23: -0.7977 REMARK 3 S TENSOR REMARK 3 S11: 0.2590 S12: -0.6480 S13: 0.1908 REMARK 3 S21: -0.1622 S22: 0.4463 S23: 0.8329 REMARK 3 S31: -1.5326 S32: 0.5570 S33: 0.5136 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN B AND RESID 275:306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.294 9.805 17.302 REMARK 3 T TENSOR REMARK 3 T11: 0.5390 T22: 0.4634 REMARK 3 T33: 0.6600 T12: 0.0557 REMARK 3 T13: 0.1558 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.4476 L22: 2.6959 REMARK 3 L33: 4.0029 L12: 1.1286 REMARK 3 L13: -1.0057 L23: 0.4509 REMARK 3 S TENSOR REMARK 3 S11: 0.6612 S12: 0.7107 S13: -0.1106 REMARK 3 S21: 0.8011 S22: -0.3854 S23: 0.2549 REMARK 3 S31: 0.6020 S32: 0.6012 S33: 0.1724 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.180700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11182 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 49.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8, 15% PEG8000, 10% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.76850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.21750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.33900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.21750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.76850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.33900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 301 REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 ASP B 48 CG OD1 OD2 REMARK 470 LEU B 50 CG CD1 CD2 REMARK 470 ASN B 51 CG OD1 ND2 REMARK 470 ARG B 279 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 306 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 133 OG1 THR B 135 2.05 REMARK 500 N ALA B 173 O HOH B 501 2.13 REMARK 500 O MET B 165 O HOH B 501 2.13 REMARK 500 NZ LYS B 102 O HOH B 502 2.17 REMARK 500 OG1 THR B 243 OD1 ASP B 245 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -125.54 56.91 REMARK 500 ASN A 84 -125.99 56.67 REMARK 500 TYR A 154 -154.56 55.31 REMARK 500 ASP B 33 -131.09 59.43 REMARK 500 ASN B 84 -122.93 60.73 REMARK 500 PHE B 112 146.88 -172.55 REMARK 500 PHE B 134 37.93 71.03 REMARK 500 LEU B 141 -169.89 -124.49 REMARK 500 TYR B 154 -121.44 56.96 REMARK 500 LEU B 177 -4.05 68.20 REMARK 500 ASP B 187 54.77 -90.19 REMARK 500 GLN B 189 35.18 -96.77 REMARK 500 ASN B 214 52.80 -90.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 9PFH A 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 DBREF 9PFH B 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 SEQADV 9PFH HIS A 132 UNP P0DTC1 PRO 3395 ENGINEERED MUTATION SEQADV 9PFH HIS B 132 UNP P0DTC1 PRO 3395 ENGINEERED MUTATION SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG HIS ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG HIS ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET WZK A 401 31 HET WZK B 401 31 HETNAM WZK N-[(4-CHLOROTHIOPHEN-2-YL)METHYL]-N-[4-(DIMETHYLAMINO) HETNAM 2 WZK PHENYL]-2-(5-HYDROXYISOQUINOLIN-4-YL)ACETAMIDE FORMUL 3 WZK 2(C24 H22 CL N3 O2 S) FORMUL 5 HOH *10(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 ILE A 43 5 3 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 GLY A 215 1 16 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 CYS A 300 1 9 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 ILE B 43 5 3 HELIX 13 AB4 ASN B 53 LYS B 61 1 9 HELIX 14 AB5 ILE B 200 ASN B 214 1 15 HELIX 15 AB6 THR B 226 TYR B 237 1 12 HELIX 16 AB7 THR B 243 LEU B 250 1 8 HELIX 17 AB8 LEU B 250 GLY B 258 1 9 HELIX 18 AB9 ALA B 260 GLY B 275 1 16 HELIX 19 AC1 THR B 292 SER B 301 1 10 SHEET 1 AA1 6 PHE A 66 GLN A 69 0 SHEET 2 AA1 6 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 3 AA1 6 THR A 25 LEU A 32 -1 O GLY A 29 N VAL A 18 SHEET 4 AA1 6 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 5 AA1 6 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 6 AA1 6 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 2 TYR A 101 PHE A 103 0 SHEET 2 AA2 2 VAL A 157 PHE A 159 1 O VAL A 157 N LYS A 102 SHEET 1 AA3 5 SER A 121 ALA A 129 0 SHEET 2 AA3 5 THR A 111 TYR A 118 -1 N ALA A 116 O SER A 123 SHEET 3 AA3 5 VAL A 148 PHE A 150 -1 O PHE A 150 N SER A 113 SHEET 4 AA3 5 TYR A 161 GLU A 166 -1 O TYR A 161 N GLY A 149 SHEET 5 AA3 5 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 LEU B 67 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O VAL B 35 N LEU B 32 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N GLY B 79 O LYS B 90 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASP B 153 O CYS B 156 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O GLY B 124 N ALA B 116 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O THR B 175 N MET B 162 CRYST1 67.537 98.678 102.435 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009762 0.00000 CONECT 4682 4710 4711 4712 CONECT 4683 4692 4703 CONECT 4684 4685 4710 CONECT 4685 4684 4688 CONECT 4686 4687 4710 CONECT 4687 4686 4688 CONECT 4688 4685 4687 4704 CONECT 4689 4705 4706 4709 CONECT 4690 4706 4707 CONECT 4691 4698 4699 CONECT 4692 4683 4699 CONECT 4693 4694 4702 CONECT 4694 4693 4695 CONECT 4695 4694 4700 CONECT 4696 4699 4700 4702 CONECT 4697 4698 CONECT 4698 4691 4697 4704 CONECT 4699 4691 4692 4696 CONECT 4700 4695 4696 4701 CONECT 4701 4700 CONECT 4702 4693 4696 4703 CONECT 4703 4683 4702 CONECT 4704 4688 4698 4705 CONECT 4705 4689 4704 CONECT 4706 4689 4690 CONECT 4707 4690 4708 4709 CONECT 4708 4707 CONECT 4709 4689 4707 CONECT 4710 4682 4684 4686 CONECT 4711 4682 CONECT 4712 4682 CONECT 4713 4741 4742 4743 CONECT 4714 4723 4734 CONECT 4715 4716 4741 CONECT 4716 4715 4719 CONECT 4717 4718 4741 CONECT 4718 4717 4719 CONECT 4719 4716 4718 4735 CONECT 4720 4736 4737 4740 CONECT 4721 4737 4738 CONECT 4722 4729 4730 CONECT 4723 4714 4730 CONECT 4724 4725 4733 CONECT 4725 4724 4726 CONECT 4726 4725 4731 CONECT 4727 4730 4731 4733 CONECT 4728 4729 CONECT 4729 4722 4728 4735 CONECT 4730 4722 4723 4727 CONECT 4731 4726 4727 4732 CONECT 4732 4731 CONECT 4733 4724 4727 4734 CONECT 4734 4714 4733 CONECT 4735 4719 4729 4736 CONECT 4736 4720 4735 CONECT 4737 4720 4721 CONECT 4738 4721 4739 4740 CONECT 4739 4738 CONECT 4740 4720 4738 CONECT 4741 4713 4715 4717 CONECT 4742 4713 CONECT 4743 4713 MASTER 480 0 2 19 28 0 0 6 4737 2 62 48 END