HEADER IMMUNE SYSTEM/TRANSFERASE/ISOMERASE 11-JUL-25 9PJ1 TITLE CRYSTAL STRUCTURE OF A SYNTHETIC FAB (4R) IN COMPLEX WITH THE TERNARY TITLE 2 ASSEMBLY OF FKBP12, RAPAMYCIN, AND THE FRB DOMAIN OF MTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP1A; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: PPIASE FKBP1A,12 KDA FK506-BINDING PROTEIN,12 KDA FKBP,FKBP- COMPND 5 12,CALSTABIN-1,FK506-BINDING PROTEIN 1A,FKBP-1A,IMMUNOPHILIN FKBP12, COMPND 6 ROTAMASE; COMPND 7 EC: 5.2.1.8; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SERINE/THREONINE-PROTEIN KINASE MTOR; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: FK506-BINDING PROTEIN 12-RAPAMYCIN COMPLEX-ASSOCIATED COMPND 13 PROTEIN 1,FKBP12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN,MAMMALIAN COMPND 14 TARGET OF RAPAMYCIN,MTOR,MECHANISTIC TARGET OF RAPAMYCIN,RAPAMYCIN COMPND 15 AND FKBP12 TARGET 1,RAPAMYCIN TARGET PROTEIN 1,TYROSINE-PROTEIN COMPND 16 KINASE MTOR; COMPND 17 EC: 2.7.11.1,2.7.10.2; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 3; COMPND 20 MOLECULE: HEAVY CHAIN; COMPND 21 CHAIN: H; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 4; COMPND 24 MOLECULE: LIGHT CHAIN; COMPND 25 CHAIN: L; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FKBP1A, FKBP1, FKBP12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MTOR, FRAP, FRAP1, FRAP2, RAFT1, RAPT1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY, MTOR, RAPAMYCIN, SENSOR, IMMUNE SYSTEM, IMMUNE SYSTEM- KEYWDS 2 TRANSFERASE-ISOMERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.O'LEARY,T.SLEZAK,A.A.KOSSIAKOFF REVDAT 1 17-JUN-26 9PJ1 0 JRNL AUTH K.M.O'LEARY,T.SLEZAK,A.A.KOSSIAKOFF JRNL TITL CRYSTAL STRUCTURE OF A SYNTHETIC FAB (4R) IN COMPLEX WITH JRNL TITL 2 THE TERNARY ASSEMBLY OF FKBP12, RAPAMYCIN, AND THE FRB JRNL TITL 3 DOMAIN OF MTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 46587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4900 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.56000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5086 ; 0.004 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 4693 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6898 ; 0.874 ; 1.801 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10865 ; 0.318 ; 1.561 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.368 ; 5.191 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ;17.619 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;11.650 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 760 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5876 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1152 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 800 ; 0.176 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 46 ; 0.131 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2431 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 483 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2539 ; 2.586 ; 2.130 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2538 ; 2.581 ; 2.130 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3165 ; 4.126 ; 3.816 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3166 ; 4.126 ; 3.817 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2547 ; 3.352 ; 2.484 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2548 ; 3.351 ; 2.484 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3733 ; 5.227 ; 4.379 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3734 ; 5.227 ; 4.380 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 227 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7160 -10.7000 6.2390 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 0.0508 REMARK 3 T33: 0.0469 T12: -0.0020 REMARK 3 T13: 0.0514 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.1737 L22: 0.1932 REMARK 3 L33: 1.7157 L12: -0.0803 REMARK 3 L13: -1.0197 L23: -0.0786 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: 0.0132 S13: 0.1338 REMARK 3 S21: -0.0360 S22: -0.0081 S23: -0.0794 REMARK 3 S31: -0.0837 S32: 0.1509 S33: -0.0634 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 2 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3270 -26.1760 -3.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.2348 T22: 0.0524 REMARK 3 T33: 0.0228 T12: 0.0367 REMARK 3 T13: 0.0301 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.1204 L22: 0.4221 REMARK 3 L33: 1.4814 L12: 0.1290 REMARK 3 L13: -1.0886 L23: -0.1581 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.0115 S13: -0.0845 REMARK 3 S21: -0.0291 S22: -0.0665 S23: -0.0777 REMARK 3 S31: 0.0951 S32: 0.0836 S33: 0.0681 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 108 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3390 -22.6330 46.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.0653 REMARK 3 T33: 0.0114 T12: -0.0171 REMARK 3 T13: 0.0013 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.0790 L22: 1.3442 REMARK 3 L33: 6.0216 L12: 0.0295 REMARK 3 L13: -1.2785 L23: -0.5196 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.0514 S13: 0.0231 REMARK 3 S21: 0.1022 S22: -0.0802 S23: 0.0269 REMARK 3 S31: -0.0398 S32: 0.0040 S33: 0.0905 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 92 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4630 -11.1430 32.7240 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.1191 REMARK 3 T33: 0.0508 T12: -0.0069 REMARK 3 T13: 0.0304 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.6365 L22: 1.6730 REMARK 3 L33: 2.1035 L12: -0.9144 REMARK 3 L13: -0.7233 L23: 0.1773 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: -0.2117 S13: 0.1297 REMARK 3 S21: 0.0877 S22: 0.0944 S23: 0.2303 REMARK 3 S31: -0.0016 S32: -0.3022 S33: -0.0136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9PJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46596 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 61.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M AMMONIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.0, 17.5% PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.43000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 143 REMARK 465 THR H 144 REMARK 465 SER H 145 REMARK 465 GLY H 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 450 O HOH L 458 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 14 -39.55 -140.09 REMARK 500 SER C 39 115.65 -160.12 REMARK 500 ALA C 82 -106.78 -125.43 REMARK 500 ILE C 91 -58.78 -130.31 REMARK 500 SER H 140 115.65 -167.60 REMARK 500 PHE H 159 137.74 -170.75 REMARK 500 SER L 31 -134.32 53.41 REMARK 500 ALA L 52 -46.44 77.08 REMARK 500 ALA L 85 -178.26 -178.55 REMARK 500 ASN L 153 -3.92 73.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 98 0.08 SIDE CHAIN REMARK 500 ARG L 62 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 156 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH H 492 DISTANCE = 6.31 ANGSTROMS DBREF 9PJ1 C 2 108 UNP P62942 FKB1A_HUMAN 2 108 DBREF 9PJ1 D 1 92 UNP P42345 MTOR_HUMAN 2021 2112 DBREF 9PJ1 H 1 227 PDB 9PJ1 9PJ1 1 227 DBREF 9PJ1 L 2 214 PDB 9PJ1 9PJ1 2 214 SEQADV 9PJ1 SER C 1 UNP P62942 EXPRESSION TAG SEQRES 1 C 108 SER GLY VAL GLN VAL GLU THR ILE SER PRO GLY ASP GLY SEQRES 2 C 108 ARG THR PHE PRO LYS ARG GLY GLN THR CYS VAL VAL HIS SEQRES 3 C 108 TYR THR GLY MET LEU GLU ASP GLY LYS LYS PHE ASP SER SEQRES 4 C 108 SER ARG ASP ARG ASN LYS PRO PHE LYS PHE MET LEU GLY SEQRES 5 C 108 LYS GLN GLU VAL ILE ARG GLY TRP GLU GLU GLY VAL ALA SEQRES 6 C 108 GLN MET SER VAL GLY GLN ARG ALA LYS LEU THR ILE SER SEQRES 7 C 108 PRO ASP TYR ALA TYR GLY ALA THR GLY HIS PRO GLY ILE SEQRES 8 C 108 ILE PRO PRO HIS ALA THR LEU VAL PHE ASP VAL GLU LEU SEQRES 9 C 108 LEU LYS LEU GLU SEQRES 1 D 92 ILE LEU TRP HIS GLU MET TRP HIS GLU GLY LEU GLU GLU SEQRES 2 D 92 ALA SER ARG LEU TYR PHE GLY GLU ARG ASN VAL LYS GLY SEQRES 3 D 92 MET PHE GLU VAL LEU GLU PRO LEU HIS ALA MET MET GLU SEQRES 4 D 92 ARG GLY PRO GLN THR LEU LYS GLU THR SER PHE ASN GLN SEQRES 5 D 92 ALA TYR GLY ARG ASP LEU MET GLU ALA GLN GLU TRP CYS SEQRES 6 D 92 ARG LYS TYR MET LYS SER GLY ASN VAL LYS ASP LEU THR SEQRES 7 D 92 GLN ALA TRP ASP LEU TYR TYR HIS VAL PHE ARG ARG ILE SEQRES 8 D 92 SER SEQRES 1 H 227 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 227 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 227 PHE ASN ILE TYR SER SER SER ILE HIS TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA TYR ILE SER SEQRES 5 H 227 SER SER SER GLY SER THR SER TYR ALA ASP SER VAL LYS SEQRES 6 H 227 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 H 227 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 227 ALA VAL TYR TYR CYS ALA ARG GLN PRO TYR GLU MET LYS SEQRES 9 H 227 GLY ILE LEU SER TRP SER HIS GLY PHE ASP TYR TRP GLY SEQRES 10 H 227 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 227 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 227 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 227 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 227 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 227 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 227 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 227 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 227 LYS LYS VAL GLU PRO LYS SEQRES 1 L 213 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 213 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 213 GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 L 213 SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 213 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 213 SER SER SER LEU ILE THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 213 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 213 PHE PRO PRO SER ASP SER GLN LEU LYS SER GLY THR ALA SEQRES 11 L 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 213 PHE ASN ARG GLY GLY HET RAP C 201 65 HETNAM RAP RAPAMYCIN IMMUNOSUPPRESSANT DRUG FORMUL 5 RAP C51 H79 N O13 FORMUL 6 HOH *501(H2 O) HELIX 1 AA1 SER C 40 ASN C 44 1 5 HELIX 2 AA2 ILE C 57 GLN C 66 1 10 HELIX 3 AA3 PRO C 79 ALA C 82 5 4 HELIX 4 AA4 LEU D 2 ARG D 22 1 21 HELIX 5 AA5 ASN D 23 MET D 37 1 15 HELIX 6 AA6 THR D 44 GLY D 72 1 29 HELIX 7 AA7 ASN D 73 SER D 92 1 20 HELIX 8 AA8 ASN H 28 TYR H 30 5 3 HELIX 9 AA9 ARG H 87 THR H 91 5 5 HELIX 10 AB1 SER H 169 ALA H 171 5 3 HELIX 11 AB2 SER H 200 LEU H 202 5 3 HELIX 12 AB3 GLN L 80 PHE L 84 5 5 HELIX 13 AB4 SER L 122 LYS L 127 1 6 HELIX 14 AB5 LYS L 184 HIS L 190 1 7 SHEET 1 AA1 5 VAL C 3 SER C 9 0 SHEET 2 AA1 5 ARG C 72 ILE C 77 -1 O ARG C 72 N ILE C 8 SHEET 3 AA1 5 LEU C 98 GLU C 108 -1 O PHE C 100 N LEU C 75 SHEET 4 AA1 5 THR C 22 LEU C 31 -1 N MET C 30 O VAL C 99 SHEET 5 AA1 5 LYS C 36 SER C 39 -1 O ASP C 38 N GLY C 29 SHEET 1 AA2 5 VAL C 3 SER C 9 0 SHEET 2 AA2 5 ARG C 72 ILE C 77 -1 O ARG C 72 N ILE C 8 SHEET 3 AA2 5 LEU C 98 GLU C 108 -1 O PHE C 100 N LEU C 75 SHEET 4 AA2 5 THR C 22 LEU C 31 -1 N MET C 30 O VAL C 99 SHEET 5 AA2 5 PHE C 47 MET C 50 -1 O PHE C 49 N CYS C 23 SHEET 1 AA3 4 GLN H 3 SER H 7 0 SHEET 2 AA3 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA3 4 THR H 78 MET H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA3 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA4 6 LEU H 11 VAL H 12 0 SHEET 2 AA4 6 THR H 120 VAL H 124 1 O THR H 123 N VAL H 12 SHEET 3 AA4 6 ALA H 92 PRO H 100 -1 N ALA H 92 O VAL H 122 SHEET 4 AA4 6 SER H 32 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA4 6 LEU H 45 SER H 52 -1 O VAL H 48 N TRP H 36 SHEET 6 AA4 6 THR H 58 TYR H 60 -1 O SER H 59 N TYR H 50 SHEET 1 AA5 4 LEU H 11 VAL H 12 0 SHEET 2 AA5 4 THR H 120 VAL H 124 1 O THR H 123 N VAL H 12 SHEET 3 AA5 4 ALA H 92 PRO H 100 -1 N ALA H 92 O VAL H 122 SHEET 4 AA5 4 TYR H 115 TRP H 116 -1 O TYR H 115 N ARG H 98 SHEET 1 AA6 2 GLU H 102 MET H 103 0 SHEET 2 AA6 2 ILE H 106 LEU H 107 -1 O ILE H 106 N MET H 103 SHEET 1 AA7 4 SER H 133 LEU H 137 0 SHEET 2 AA7 4 THR H 148 TYR H 158 -1 O LEU H 154 N PHE H 135 SHEET 3 AA7 4 TYR H 189 PRO H 198 -1 O TYR H 189 N TYR H 158 SHEET 4 AA7 4 VAL H 176 THR H 178 -1 N HIS H 177 O VAL H 194 SHEET 1 AA8 4 SER H 133 LEU H 137 0 SHEET 2 AA8 4 THR H 148 TYR H 158 -1 O LEU H 154 N PHE H 135 SHEET 3 AA8 4 TYR H 189 PRO H 198 -1 O TYR H 189 N TYR H 158 SHEET 4 AA8 4 VAL H 182 LEU H 183 -1 N VAL H 182 O SER H 190 SHEET 1 AA9 3 THR H 164 TRP H 167 0 SHEET 2 AA9 3 ILE H 208 HIS H 213 -1 O ASN H 210 N SER H 166 SHEET 3 AA9 3 THR H 218 LYS H 223 -1 O VAL H 220 N VAL H 211 SHEET 1 AB1 4 MET L 5 SER L 8 0 SHEET 2 AB1 4 VAL L 20 ALA L 26 -1 O THR L 23 N SER L 8 SHEET 3 AB1 4 ASP L 71 ILE L 76 -1 O PHE L 72 N CYS L 24 SHEET 4 AB1 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AB2 6 SER L 11 ALA L 14 0 SHEET 2 AB2 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 AB2 6 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AB2 6 VAL L 34 GLN L 39 -1 N GLN L 39 O THR L 86 SHEET 5 AB2 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AB2 6 SER L 54 LEU L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AB3 4 SER L 11 ALA L 14 0 SHEET 2 AB3 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 AB3 4 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AB3 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB4 4 SER L 115 PHE L 119 0 SHEET 2 AB4 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 AB4 4 TYR L 174 SER L 183 -1 O LEU L 176 N LEU L 137 SHEET 4 AB4 4 SER L 160 VAL L 164 -1 N SER L 163 O SER L 177 SHEET 1 AB5 4 ALA L 154 LEU L 155 0 SHEET 2 AB5 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB5 4 VAL L 192 THR L 198 -1 O ALA L 194 N LYS L 150 SHEET 4 AB5 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 153 CYS H 209 1555 1555 2.04 SSBOND 3 CYS L 24 CYS L 89 1555 1555 2.06 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.05 CISPEP 1 PHE H 159 PRO H 160 0 -6.51 CISPEP 2 GLU H 161 PRO H 162 0 -7.28 CISPEP 3 SER L 8 PRO L 9 0 -9.72 CISPEP 4 TYR L 141 PRO L 142 0 4.09 CRYST1 62.720 72.860 85.900 90.00 103.05 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015944 0.000000 0.003696 0.00000 SCALE2 0.000000 0.013725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011950 0.00000 CONECT 1775 2340 CONECT 2340 1775 CONECT 2729 3143 CONECT 3143 2729 CONECT 3452 3949 CONECT 3949 3452 CONECT 4284 4763 CONECT 4763 4284 CONECT 4905 4906 4907 4908 CONECT 4906 4905 4949 CONECT 4907 4905 CONECT 4908 4905 4909 4913 CONECT 4909 4908 4910 CONECT 4910 4909 4911 CONECT 4911 4910 4912 CONECT 4912 4911 4913 CONECT 4913 4908 4912 4914 CONECT 4914 4913 4915 4916 CONECT 4915 4914 CONECT 4916 4914 4917 4918 CONECT 4917 4916 CONECT 4918 4916 4919 4920 4921 CONECT 4919 4918 4924 CONECT 4920 4918 CONECT 4921 4918 4922 4960 CONECT 4922 4921 4923 CONECT 4923 4922 4924 CONECT 4924 4919 4923 4925 CONECT 4925 4924 4926 CONECT 4926 4925 4927 4928 CONECT 4927 4926 4967 CONECT 4928 4926 4929 4961 CONECT 4929 4928 4930 CONECT 4930 4929 4931 CONECT 4931 4930 4932 CONECT 4932 4931 4933 CONECT 4933 4932 4934 CONECT 4934 4933 4935 4962 CONECT 4935 4934 4936 CONECT 4936 4935 4937 4963 CONECT 4937 4936 4938 4939 CONECT 4938 4937 CONECT 4939 4937 4940 4941 CONECT 4940 4939 4968 CONECT 4941 4939 4942 4943 CONECT 4942 4941 CONECT 4943 4941 4944 4964 CONECT 4944 4943 4945 CONECT 4945 4944 4946 4965 CONECT 4946 4945 4947 4948 CONECT 4947 4946 CONECT 4948 4946 4949 CONECT 4949 4906 4948 4950 CONECT 4950 4949 4951 4966 CONECT 4951 4950 4952 CONECT 4952 4951 4953 4959 CONECT 4953 4952 4954 CONECT 4954 4953 4955 4956 CONECT 4955 4954 4969 CONECT 4956 4954 4957 4958 CONECT 4957 4956 CONECT 4958 4956 4959 CONECT 4959 4952 4958 CONECT 4960 4921 CONECT 4961 4928 CONECT 4962 4934 CONECT 4963 4936 CONECT 4964 4943 CONECT 4965 4945 CONECT 4966 4950 CONECT 4967 4927 CONECT 4968 4940 CONECT 4969 4955 MASTER 377 0 1 14 59 0 0 6 5466 4 73 52 END