HEADER LYASE 14-JUL-25 9PKH TITLE PHENYLALANINE AMMONIA-LYASE FROM JOINVILLEA ASCENDENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE AMMONIA-LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.3.1.24; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JOINVILLEA ASCENDENS; SOURCE 3 ORGANISM_TAXID: 38723; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOENZYME, PHENYLALANINE AMMONIA-LYASE, PHENYLPROPANOID BIOSYNTHESIS, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.MORRIS,J.M.JEZ,W.HAVRANEK REVDAT 1 19-AUG-26 9PKH 0 JRNL AUTH Y.TAKEDA-KIMURA,B.MOORE,S.HOLDEN,J.S.MORRIS,S.K.DEB, JRNL AUTH 2 C.SANDERS,J.EL-AZAZ,M.BARRETT,D.LORENCE,M.V.V.DE OLIVEIRA, JRNL AUTH 3 W.M.HAVRANEK,J.GRIMWOOD,M.WILLIAMS,L.B.BOSTON,J.JENKINS, JRNL AUTH 4 C.PLOTT,S.SHU,K.BARRY,D.M.GOODSTEIN,J.SCHMUTZ,J.M.JEZ, JRNL AUTH 5 M.J.MOSCOU,M.R.MCKAIN,J.H.LEEBENS-MACK,H.A.MAEDA JRNL TITL GENOMES OF POACEAE SISTERS REVEAL KEY METABOLIC INNOVATIONS JRNL TITL 2 PRECEDING THE EVOLUTION OF GRASSES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874: ??? REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 28691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.0000 - 2.9000 0.36 1073 62 0.3257 0.3588 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.6515 -11.5842 19.2062 REMARK 3 T TENSOR REMARK 3 T11: 0.6423 T22: 0.622 REMARK 3 T33: 0.72 T12: 0.0917 REMARK 3 T13: -0.3634 T23: -0.1171 REMARK 3 L TENSOR REMARK 3 L11: 1.1327 L22: 2.1102 REMARK 3 L33: 0.5688 L12: -0.3029 REMARK 3 L13: 0.0412 L23: 0.1258 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.2744 S13: -0.2473 REMARK 3 S21: 0.8652 S22: 0.2005 S23: -0.9197 REMARK 3 S31: 0.256 S32: 0.1579 S33: -0.1881 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A):-103.2182 27.2625 22.7722 REMARK 3 T TENSOR REMARK 3 T11: 0.682 T22: 0.4784 REMARK 3 T33: 0.2779 T12: 0.1203 REMARK 3 T13: 0.0153 T23: -0.0979 REMARK 3 L TENSOR REMARK 3 L11: 3.0716 L22: 3.5045 REMARK 3 L33: 3.1468 L12: 1.8093 REMARK 3 L13: -0.2699 L23: 1.0688 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: -0.3558 S13: 0.0198 REMARK 3 S21: 0.9126 S22: 0.1562 S23: -0.0182 REMARK 3 S31: -0.1106 S32: -0.11 S33: -0.1377 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 360 THROUGH 720 ) REMARK 3 ORIGIN FOR THE GROUP (A): -92.6085 26.9165 11.2279 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.4769 REMARK 3 T33: 0.3409 T12: -0.0018 REMARK 3 T13: -0.0047 T23: -0.1065 REMARK 3 L TENSOR REMARK 3 L11: 0.4472 L22: 3.1731 REMARK 3 L33: 0.2489 L12: 0.1282 REMARK 3 L13: -0.0262 L23: 0.1523 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: -0.0693 S13: 0.0886 REMARK 3 S21: 0.4324 S22: 0.2372 S23: -0.619 REMARK 3 S31: -0.0947 S32: 0.1219 S33: -0.1872 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS UN 30, 2024 (BUILT 20241002) REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.12.14, AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 34.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 40.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 42.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.81000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M SODIUM FORMATE, 0.02M AMMONIUM REMARK 280 ACETATE, 0.02M SODIUM CITRATE TRIBASIC DIHYDRATE, 0.02M REMARK 280 POTASSIUM SODIUM TARTRATE TETRAHYDRATE, 0.02M SODIUM OXAMATE, REMARK 280 0.039M BICINE, 0.061M TRIS BASE, 20% V/V ETHYLENE GLYCOL, 10% W/ REMARK 280 V PEG 8000, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.91000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.95500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.91000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.95500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 36.95500 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 73.91000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.95500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -210.28000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -210.28000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 814 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 CYS A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 ASN A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 ASN A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 CYS A 21 REMARK 465 LEU A 22 REMARK 465 GLN A 23 REMARK 465 LYS A 24 REMARK 465 PRO A 25 REMARK 465 GLN A 26 REMARK 465 GLY A 109 REMARK 465 THR A 110 REMARK 465 ASP A 111 REMARK 465 SER A 112 REMARK 465 TYR A 113 REMARK 465 GLY A 114 REMARK 465 VAL A 115 REMARK 465 THR A 116 REMARK 465 THR A 117 REMARK 465 GLY A 118 REMARK 465 PHE A 119 REMARK 465 GLY A 120 REMARK 465 ALA A 121 REMARK 465 THR A 122 REMARK 465 SER A 123 REMARK 465 HIS A 124 REMARK 465 ARG A 125 REMARK 465 ARG A 126 REMARK 465 THR A 127 REMARK 465 LYS A 128 REMARK 465 LEU A 347 REMARK 465 MET A 348 REMARK 465 LYS A 349 REMARK 465 PRO A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 538 ND2 ASN A 542 2.19 REMARK 500 O THR A 205 OG SER A 496 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 31 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 LYS A 61 CD - CE - NZ ANGL. DEV. = -14.9 DEGREES REMARK 500 LEU A 210 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 PRO A 346 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 66 -14.66 82.86 REMARK 500 ALA A 77 -44.55 -155.25 REMARK 500 ALA A 83 170.80 -59.87 REMARK 500 SER A 150 11.14 -145.16 REMARK 500 LYS A 257 -19.58 77.31 REMARK 500 HIS A 314 -11.30 69.44 REMARK 500 ASP A 345 70.38 31.95 REMARK 500 GLN A 405 109.18 -54.83 REMARK 500 LYS A 681 -161.95 -120.39 REMARK 500 GLN A 698 5.10 -67.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 223 0.14 SIDE CHAIN REMARK 500 ASN A 264 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9PKH A 1 720 PDB 9PKH 9PKH 1 720 SEQRES 1 A 718 MET GLU CYS GLU ASN GLY ASN VAL ALA ALA VAL ALA ALA SEQRES 2 A 718 VAL ASN GLY GLY ASN GLY LEU CYS LEU GLN LYS PRO GLN SEQRES 3 A 718 HIS ALA ASP PRO LEU ASN TRP GLY LYS ALA ALA GLY GLU SEQRES 4 A 718 LEU MET GLY SER HIS LEU GLU GLU VAL LYS ARG MET VAL SEQRES 5 A 718 ALA GLU PHE ARG ALA PRO VAL VAL LYS ILE GLU GLY ALA SEQRES 6 A 718 SER LEU ARG ILE ALA GLN VAL ALA ALA VAL ALA ALA GLY SEQRES 7 A 718 GLU ALA ALA ALA ALA LYS VAL GLU LEU ASP GLU SER SER SEQRES 8 A 718 ARG GLY ARG VAL LYS ALA SER SER ASP TRP VAL MET SER SEQRES 9 A 718 SER MET MET ASN GLY THR ASP SER TYR GLY VAL THR THR SEQRES 10 A 718 GLY PHE GLY ALA THR SER HIS ARG ARG THR LYS GLU GLY SEQRES 11 A 718 GLY ALA LEU GLN ARG GLU LEU ILE ARG PHE LEU ASN ALA SEQRES 12 A 718 GLY VAL PHE GLY THR GLY SER ASP GLY HIS VAL LEU PRO SEQRES 13 A 718 ALA ALA ALA THR ARG ALA ALA MET LEU VAL ARG ILE ASN SEQRES 14 A 718 THR LEU LEU GLN GLY TYR SER GLY ILE ARG PHE GLU ILE SEQRES 15 A 718 LEU GLU ALA ILE THR ALA LEU LEU ASN ALA GLY VAL THR SEQRES 16 A 718 PRO CYS LEU PRO LEU ARG GLY THR ILE THR MDO ASP LEU SEQRES 17 A 718 VAL PRO LEU SER TYR ILE ALA GLY LEU ILE THR GLY ARG SEQRES 18 A 718 PRO ASN SER VAL ALA VAL ALA PRO ASP GLY ARG LYS VAL SEQRES 19 A 718 ASP ALA ALA GLU ALA PHE LYS ILE ALA GLY ILE GLN HIS SEQRES 20 A 718 GLY PHE PHE GLU LEU GLN PRO LYS GLU GLY LEU ALA MET SEQRES 21 A 718 VAL ASN GLY THR ALA VAL GLY SER GLY LEU ALA SER THR SEQRES 22 A 718 VAL LEU PHE GLU ALA ASN ILE LEU THR ILE LEU ALA GLU SEQRES 23 A 718 VAL LEU SER ALA VAL PHE CYS GLU VAL MET THR GLY LYS SEQRES 24 A 718 PRO GLU TYR THR ASP HIS LEU THR HIS LYS LEU LYS HIS SEQRES 25 A 718 HIS PRO GLY GLN ILE GLU ALA ALA ALA ILE MET GLU HIS SEQRES 26 A 718 ILE LEU GLU GLY SER SER TYR MET LYS LEU ALA LYS LYS SEQRES 27 A 718 LEU GLY ASP LEU ASP PRO LEU MET LYS PRO LYS GLN ASP SEQRES 28 A 718 ARG TYR ALA LEU ARG THR SER PRO GLN TRP LEU GLY PRO SEQRES 29 A 718 GLN ILE GLU VAL ILE ARG ALA SER THR LYS SER ILE GLU SEQRES 30 A 718 ARG GLU ILE ASN SER VAL ASN ASP ASN PRO LEU ILE ASP SEQRES 31 A 718 VAL SER ARG GLY LYS ALA LEU HIS GLY GLY ASN PHE GLN SEQRES 32 A 718 GLY THR PRO ILE GLY VAL SER MET ASP ASN THR ARG LEU SEQRES 33 A 718 ALA ILE ALA ALA ILE GLY LYS LEU MET PHE ALA GLN PHE SEQRES 34 A 718 SER GLU LEU VAL ASN ASP PHE TYR ASN ASN GLY LEU PRO SEQRES 35 A 718 SER ASN LEU SER GLY GLY ARG ASN PRO SER LEU ASP TYR SEQRES 36 A 718 GLY PHE LYS GLY ALA GLU ILE ALA MET ALA SER TYR CYS SEQRES 37 A 718 SER GLU LEU GLN PHE LEU ALA ASN PRO VAL THR ASN HIS SEQRES 38 A 718 VAL GLN SER ALA GLU GLN HIS ASN GLN ASP VAL ASN SER SEQRES 39 A 718 LEU GLY LEU ILE SER SER ARG LYS THR ALA GLU ALA VAL SEQRES 40 A 718 ASP ILE LEU LYS LEU MET SER SER THR PHE LEU ILE ALA SEQRES 41 A 718 LEU CYS GLN ALA ILE ASP LEU ARG HIS LEU GLU GLU ASN SEQRES 42 A 718 LEU LYS SER ALA VAL LYS ASN CYS VAL ALA GLN VAL ALA SEQRES 43 A 718 LYS LYS ALA LEU THR LEU ASN THR VAL GLY ASP LEU HIS SEQRES 44 A 718 ASN ALA ARG PHE SER GLU LYS ASP LEU LEU THR ALA ILE SEQRES 45 A 718 ASP ARG GLU ALA LEU PHE ALA TYR ALA ASP ASP PRO CYS SEQRES 46 A 718 ASN PRO ASN TYR PRO LEU MET GLN LYS LEU ARG ALA VAL SEQRES 47 A 718 LEU VAL GLU HIS ALA LEU ALA ASN GLY GLU ALA GLU HIS SEQRES 48 A 718 VAL ALA THR THR SER VAL PHE ALA LYS ILE THR LYS PHE SEQRES 49 A 718 GLU GLU GLU LEU ARG ALA THR LEU PRO LYS GLU VAL GLU SEQRES 50 A 718 ALA ALA ARG VAL ALA VAL GLU ASN GLY THR ALA PRO THR SEQRES 51 A 718 PRO ASN ARG ILE LYS GLU CYS ARG SER TYR PRO LEU TYR SEQRES 52 A 718 ARG PHE VAL ARG GLU GLU LEU GLY THR GLU TYR LEU THR SEQRES 53 A 718 GLY GLU LYS LEU ARG SER PRO GLY GLU GLU CYS ASN LYS SEQRES 54 A 718 VAL PHE VAL ALA ILE ASN GLN GLY LYS LEU ILE ASP PRO SEQRES 55 A 718 LEU LEU GLU CYS LEU LYS GLU TRP ASN GLY GLU PRO LEU SEQRES 56 A 718 PRO ILE CYS HET MDO A 206 13 HETNAM MDO {2-[(1S)-1-AMINOETHYL]-4-METHYLIDENE-5-OXO-4,5-DIHYDRO- HETNAM 2 MDO 1H-IMIDAZOL-1-YL}ACETIC ACID HETSYN MDO 4-METHYLIDENE-5-ONE; PEPTIDE DERIVED CHROMOPHORE FORMUL 1 MDO C8 H11 N3 O3 FORMUL 2 HOH *23(H2 O) HELIX 1 AA1 ASN A 32 GLU A 39 1 8 HELIX 2 AA2 SER A 43 ALA A 57 1 15 HELIX 3 AA3 ARG A 68 ALA A 77 1 10 HELIX 4 AA4 GLU A 89 ASN A 108 1 20 HELIX 5 AA5 GLY A 130 ASN A 142 1 13 HELIX 6 AA6 PRO A 156 THR A 170 1 15 HELIX 7 AA7 ARG A 179 GLY A 193 1 15 HELIX 8 AA8 LEU A 210 GLY A 222 1 13 HELIX 9 AA9 ASP A 237 ALA A 245 1 9 HELIX 10 AB1 LYS A 257 ASN A 264 1 8 HELIX 11 AB2 THR A 266 THR A 299 1 34 HELIX 12 AB3 LYS A 301 THR A 305 5 5 HELIX 13 AB4 ASP A 306 LEU A 312 1 7 HELIX 14 AB5 HIS A 315 GLY A 331 1 17 HELIX 15 AB6 SER A 332 LEU A 341 1 10 HELIX 16 AB7 GLY A 342 LEU A 344 5 3 HELIX 17 AB8 ARG A 354 THR A 359 1 6 HELIX 18 AB9 THR A 359 ASN A 383 1 25 HELIX 19 AC1 GLY A 406 ASN A 436 1 31 HELIX 20 AC2 PRO A 444 SER A 448 5 5 HELIX 21 AC3 ASN A 452 ASP A 456 5 5 HELIX 22 AC4 TYR A 457 GLY A 458 5 2 HELIX 23 AC5 PHE A 459 ALA A 477 1 19 HELIX 24 AC6 VAL A 480 VAL A 484 5 5 HELIX 25 AC7 LEU A 497 THR A 553 1 57 HELIX 26 AC8 HIS A 561 PHE A 565 5 5 HELIX 27 AC9 SER A 566 GLU A 577 1 12 HELIX 28 AD1 ALA A 578 TYR A 582 5 5 HELIX 29 AD2 TYR A 591 LEU A 606 1 16 HELIX 30 AD3 ALA A 607 SER A 618 5 12 HELIX 31 AD4 VAL A 619 ALA A 621 5 3 HELIX 32 AD5 LYS A 622 ASN A 647 1 26 HELIX 33 AD6 ASN A 654 CYS A 659 5 6 HELIX 34 AD7 SER A 661 GLU A 670 1 10 HELIX 35 AD8 SER A 684 GLN A 698 1 15 HELIX 36 AD9 LEU A 701 CYS A 708 1 8 SHEET 1 AA1 2 VAL A 59 ILE A 62 0 SHEET 2 AA1 2 LYS A 84 LEU A 87 1 O LYS A 84 N VAL A 60 SHEET 1 AA2 3 THR A 195 PRO A 196 0 SHEET 2 AA2 3 ALA A 228 VAL A 229 -1 O VAL A 229 N THR A 195 SHEET 3 AA2 3 LYS A 235 VAL A 236 -1 O VAL A 236 N ALA A 228 SHEET 1 AA3 2 LEU A 390 ASP A 392 0 SHEET 2 AA3 2 LYS A 397 LEU A 399 -1 O LEU A 399 N LEU A 390 LINK C THR A 205 N1 MDO A 206 1555 1555 1.32 LINK C3 MDO A 206 N ASP A 209 1555 1555 1.33 CISPEP 1 ASN A 388 PRO A 389 0 -7.22 CRYST1 210.280 210.280 110.865 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004756 0.002746 0.000000 0.00000 SCALE2 0.000000 0.005491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009020 0.00000 CONECT 1166 1171 CONECT 1171 1166 1172 CONECT 1172 1171 1173 1174 CONECT 1173 1172 1175 1180 CONECT 1174 1172 CONECT 1175 1173 1176 CONECT 1176 1175 1177 1179 CONECT 1177 1176 1178 1180 CONECT 1178 1177 CONECT 1179 1176 CONECT 1180 1173 1177 1181 CONECT 1181 1180 1182 CONECT 1182 1181 1183 1184 CONECT 1183 1182 CONECT 1184 1182 MASTER 424 0 1 36 7 0 0 6 5102 1 15 56 END