HEADER RNA BINDING PROTEIN/RNA 22-JUL-25 9PQ8 TITLE CRYSTAL STRUCTURE OF DND1-NANOS3-RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEAD END PROTEIN HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-230; COMPND 5 SYNONYM: RNA-BINDING MOTIF,SINGLE-STRANDED-INTERACTING PROTEIN 4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOS HOMOLOG 3; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 55-113; COMPND 11 SYNONYM: NOS-3; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: RNA 5'-R(AP*UP*AP*UP*GP*AP*AP*UP*UP*U)-3'; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DND1, RBMS4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NANOS3, NOS3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606 KEYWDS RRM, ZINC FINGER, RNA BINDING PROTEIN, RNA BINDING PROTEIN-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,T.M.T.HALL REVDAT 1 30-SEP-26 9PQ8 0 JRNL AUTH M.SUZAWA,C.QIU,T.M.T.HALL,M.HAFNER JRNL TITL THE DND1-NANOS3 COMPLEX SHAPES THE PRIMORDIAL GERM CELL JRNL TITL 2 TRANSCRIPTOME VIA A HEPTANUCLEOTIDE MOTIF IN MRNA 3'UTRS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2500 - 4.0300 0.99 2662 129 0.1541 0.2079 REMARK 3 2 4.0300 - 3.2000 0.99 2590 138 0.1593 0.1694 REMARK 3 3 3.2000 - 2.7900 1.00 2594 146 0.1830 0.2315 REMARK 3 4 2.7900 - 2.5400 1.00 2578 129 0.1880 0.2321 REMARK 3 5 2.5400 - 2.3600 1.00 2595 120 0.1794 0.2146 REMARK 3 6 2.3600 - 2.2200 1.00 2584 128 0.1878 0.2347 REMARK 3 7 2.2200 - 2.1100 1.00 2541 142 0.1973 0.2699 REMARK 3 8 2.1100 - 2.0100 1.00 2582 144 0.2143 0.2498 REMARK 3 9 2.0100 - 1.9400 1.00 2516 137 0.2277 0.2457 REMARK 3 10 1.9400 - 1.8700 1.00 2588 120 0.2523 0.2759 REMARK 3 11 1.8700 - 1.8100 1.00 2547 131 0.2716 0.2835 REMARK 3 12 1.8100 - 1.7600 0.99 2571 141 0.3210 0.3842 REMARK 3 13 1.7600 - 1.7100 0.97 2430 150 0.3520 0.3621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.226 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.844 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2457 REMARK 3 ANGLE : 0.879 3362 REMARK 3 CHIRALITY : 0.052 368 REMARK 3 PLANARITY : 0.007 417 REMARK 3 DIHEDRAL : 13.759 970 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4258 7.5877 -33.1558 REMARK 3 T TENSOR REMARK 3 T11: 0.2036 T22: 0.2061 REMARK 3 T33: 0.2591 T12: -0.0113 REMARK 3 T13: -0.0213 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.4376 L22: 1.9880 REMARK 3 L33: 1.7754 L12: -1.2447 REMARK 3 L13: -1.1138 L23: 0.8252 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.2091 S13: -0.0212 REMARK 3 S21: -0.0454 S22: -0.0207 S23: 0.0465 REMARK 3 S31: 0.0393 S32: -0.1892 S33: 0.0322 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2418 2.4843 -22.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.2005 REMARK 3 T33: 0.2478 T12: -0.0135 REMARK 3 T13: 0.0059 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 4.7463 L22: 3.0839 REMARK 3 L33: 5.1682 L12: 0.5102 REMARK 3 L13: -2.4663 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.0604 S13: -0.1431 REMARK 3 S21: 0.2004 S22: -0.0130 S23: 0.2767 REMARK 3 S31: 0.1911 S32: -0.4694 S33: 0.0255 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8323 17.0732 -6.7286 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.3807 REMARK 3 T33: 0.3146 T12: -0.0778 REMARK 3 T13: 0.1361 T23: -0.1053 REMARK 3 L TENSOR REMARK 3 L11: 3.4446 L22: 5.5809 REMARK 3 L33: 4.7056 L12: 1.6731 REMARK 3 L13: -0.0260 L23: 2.3661 REMARK 3 S TENSOR REMARK 3 S11: 0.2314 S12: -0.5858 S13: 0.4714 REMARK 3 S21: -0.2090 S22: 0.2078 S23: -0.3799 REMARK 3 S31: -0.9052 S32: 0.4775 S33: -0.2300 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1474 18.8065 -5.9504 REMARK 3 T TENSOR REMARK 3 T11: 0.3906 T22: 0.4719 REMARK 3 T33: 0.4019 T12: -0.0709 REMARK 3 T13: 0.0637 T23: -0.1434 REMARK 3 L TENSOR REMARK 3 L11: 4.3744 L22: 2.6555 REMARK 3 L33: 6.2442 L12: -0.8837 REMARK 3 L13: 0.4442 L23: 2.6474 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: -0.2353 S13: 0.2666 REMARK 3 S21: 0.1297 S22: 0.4751 S23: -0.4926 REMARK 3 S31: -0.5056 S32: 1.3557 S33: -0.4157 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7079 0.8338 -26.7046 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.1728 REMARK 3 T33: 0.2798 T12: 0.0155 REMARK 3 T13: -0.0199 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.4064 L22: 6.9996 REMARK 3 L33: 7.9772 L12: -3.6845 REMARK 3 L13: -0.7962 L23: 3.4838 REMARK 3 S TENSOR REMARK 3 S11: -0.1260 S12: -0.1555 S13: -0.0921 REMARK 3 S21: 0.1783 S22: 0.0878 S23: -0.5187 REMARK 3 S31: 0.3372 S32: 0.3938 S33: 0.0780 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4996 10.7907 -33.8054 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.1416 REMARK 3 T33: 0.2006 T12: 0.0028 REMARK 3 T13: 0.0017 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 5.1155 L22: 3.5645 REMARK 3 L33: 3.7330 L12: 1.7879 REMARK 3 L13: 0.3028 L23: -2.1758 REMARK 3 S TENSOR REMARK 3 S11: -0.1293 S12: -0.0264 S13: -0.1050 REMARK 3 S21: 0.1382 S22: 0.0980 S23: -0.0525 REMARK 3 S31: -0.1214 S32: 0.0513 S33: 0.0634 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7277 18.5492 -28.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.2193 REMARK 3 T33: 0.2818 T12: 0.0083 REMARK 3 T13: -0.0371 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.2617 L22: 7.1399 REMARK 3 L33: 8.5255 L12: 4.4919 REMARK 3 L13: 0.9448 L23: -1.2029 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: -0.4445 S13: 0.2561 REMARK 3 S21: 0.3867 S22: -0.3415 S23: 0.1128 REMARK 3 S31: -0.8528 S32: 0.2866 S33: 0.2157 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1571 11.9150 -21.2487 REMARK 3 T TENSOR REMARK 3 T11: 0.2613 T22: 0.2256 REMARK 3 T33: 0.2730 T12: -0.0099 REMARK 3 T13: -0.0398 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 9.6364 L22: -0.0165 REMARK 3 L33: 7.4725 L12: 0.1963 REMARK 3 L13: -8.6140 L23: -0.2025 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: -0.1155 S13: 0.2207 REMARK 3 S21: 0.1521 S22: 0.0928 S23: -0.1649 REMARK 3 S31: 0.0655 S32: -0.1188 S33: -0.1689 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000298223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KB BIMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35227 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 33.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8-1.0 M POTASSIUM/SODIUM TARTRATE, REMARK 280 0.1 M HEPES, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.79000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 SER A 3 REMARK 465 GLY A 230 REMARK 465 SER B 54 REMARK 465 GLY B 113 REMARK 465 A C 1 REMARK 465 U C 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U C 10 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U C 10 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U C 10 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 37 -128.48 49.96 REMARK 500 CYS A 138 20.85 -142.79 REMARK 500 ARG B 100 -123.61 50.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 58 SG REMARK 620 2 CYS B 61 SG 117.2 REMARK 620 3 HIS B 74 NE2 102.7 103.2 REMARK 620 4 CYS B 85 SG 107.3 110.6 116.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 93 SG REMARK 620 2 CYS B 96 SG 113.1 REMARK 620 3 HIS B 104 NE2 105.4 98.3 REMARK 620 4 CYS B 109 SG 108.3 118.5 112.2 REMARK 620 N 1 2 3 DBREF 9PQ8 A 1 230 UNP Q8IYX4 DND1_HUMAN 1 230 DBREF 9PQ8 B 55 113 UNP P60323 NANO3_HUMAN 55 113 DBREF 9PQ8 C 1 10 PDB 9PQ8 9PQ8 1 10 SEQADV 9PQ8 SER A 0 UNP Q8IYX4 EXPRESSION TAG SEQADV 9PQ8 SER B 54 UNP P60323 EXPRESSION TAG SEQRES 1 A 231 SER MET GLN SER LYS ARG ASP CYS GLU LEU TRP CYS GLU SEQRES 2 A 231 ARG VAL ASN PRO GLU ASN LYS ALA ALA LEU GLU ALA TRP SEQRES 3 A 231 VAL ARG GLU THR GLY ILE ARG LEU VAL GLN VAL ASN GLY SEQRES 4 A 231 GLN ARG LYS TYR GLY GLY PRO PRO PRO GLY TRP VAL GLY SEQRES 5 A 231 SER PRO PRO PRO ALA GLY SER GLU VAL PHE ILE GLY ARG SEQRES 6 A 231 LEU PRO GLN ASP VAL TYR GLU HIS GLN LEU ILE PRO LEU SEQRES 7 A 231 PHE GLN ARG VAL GLY ARG LEU TYR GLU PHE ARG LEU MET SEQRES 8 A 231 MET THR PHE SER GLY LEU ASN ARG GLY PHE ALA TYR ALA SEQRES 9 A 231 ARG TYR SER SER ARG ARG GLY ALA GLN ALA ALA ILE ALA SEQRES 10 A 231 THR LEU HIS ASN HIS PRO LEU ARG PRO SER CYS PRO LEU SEQRES 11 A 231 LEU VAL CYS ARG SER THR GLU LYS CYS GLU LEU SER VAL SEQRES 12 A 231 ASP GLY LEU PRO PRO ASN LEU THR ARG SER ALA LEU LEU SEQRES 13 A 231 LEU ALA LEU GLN PRO LEU GLY PRO GLY LEU GLN GLU ALA SEQRES 14 A 231 ARG LEU LEU PRO SER PRO GLY PRO ALA PRO GLY GLN ILE SEQRES 15 A 231 ALA LEU LEU LYS PHE SER SER HIS ARG ALA ALA ALA MET SEQRES 16 A 231 ALA LYS LYS ALA LEU VAL GLU GLY GLN SER HIS LEU CYS SEQRES 17 A 231 GLY GLU GLN VAL ALA VAL GLU TRP LEU LYS PRO ASP LEU SEQRES 18 A 231 LYS GLN ARG LEU ARG GLN GLN LEU VAL GLY SEQRES 1 B 60 SER GLU ARG LEU CYS SER PHE CYS LYS HIS ASN GLY GLU SEQRES 2 B 60 SER ARG ALA ILE TYR GLN SER HIS VAL LEU LYS ASP GLU SEQRES 3 B 60 ALA GLY ARG VAL LEU CYS PRO ILE LEU ARG ASP TYR VAL SEQRES 4 B 60 CYS PRO GLN CYS GLY ALA THR ARG GLU ARG ALA HIS THR SEQRES 5 B 60 ARG ARG PHE CYS PRO LEU THR GLY SEQRES 1 C 10 A U A U G A A U U U HET ZN B 201 1 HET ZN B 202 1 HETNAM ZN ZINC ION FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *189(H2 O) HELIX 1 AA1 ARG A 5 ARG A 13 1 9 HELIX 2 AA2 ASN A 15 GLY A 30 1 16 HELIX 3 AA3 TYR A 70 GLN A 73 5 4 HELIX 4 AA4 LEU A 74 ARG A 80 1 7 HELIX 5 AA5 SER A 107 HIS A 119 1 13 HELIX 6 AA6 THR A 150 ALA A 157 1 8 HELIX 7 AA7 SER A 188 GLU A 201 1 14 HELIX 8 AA8 LYS A 217 VAL A 229 1 13 HELIX 9 AA9 CYS B 58 ASN B 64 1 7 HELIX 10 AB1 SER B 67 GLN B 72 1 6 HELIX 11 AB2 CYS B 85 TYR B 91 1 7 HELIX 12 AB3 THR B 99 ALA B 103 5 5 HELIX 13 AB4 THR B 105 CYS B 109 5 5 SHEET 1 AA1 6 VAL A 34 VAL A 36 0 SHEET 2 AA1 6 GLN A 39 GLY A 43 -1 O LYS A 41 N VAL A 34 SHEET 3 AA1 6 LEU A 84 MET A 91 -1 O PHE A 87 N TYR A 42 SHEET 4 AA1 6 ASN A 97 TYR A 105 -1 O ARG A 104 N TYR A 85 SHEET 5 AA1 6 GLU A 59 GLY A 63 -1 N ILE A 62 O ALA A 101 SHEET 6 AA1 6 LEU A 130 ARG A 133 -1 O LEU A 130 N GLY A 63 SHEET 1 AA2 2 PRO A 122 ARG A 124 0 SHEET 2 AA2 2 CYS A 127 PRO A 128 -1 O CYS A 127 N ARG A 124 SHEET 1 AA3 4 LEU A 165 PRO A 172 0 SHEET 2 AA3 4 GLN A 180 PHE A 186 -1 O ILE A 181 N LEU A 171 SHEET 3 AA3 4 GLU A 139 LEU A 145 -1 N LEU A 140 O LEU A 184 SHEET 4 AA3 4 ALA A 212 TRP A 215 -1 O ALA A 212 N ASP A 143 SHEET 1 AA4 2 HIS A 205 LEU A 206 0 SHEET 2 AA4 2 GLU A 209 GLN A 210 -1 O GLU A 209 N LEU A 206 LINK SG CYS B 58 ZN ZN B 202 1555 1555 2.33 LINK SG CYS B 61 ZN ZN B 202 1555 1555 2.31 LINK NE2 HIS B 74 ZN ZN B 202 1555 1555 2.11 LINK SG CYS B 85 ZN ZN B 202 1555 1555 2.32 LINK SG CYS B 93 ZN ZN B 201 1555 1555 2.29 LINK SG CYS B 96 ZN ZN B 201 1555 1555 2.26 LINK NE2 HIS B 104 ZN ZN B 201 1555 1555 2.09 LINK SG CYS B 109 ZN ZN B 201 1555 1555 2.33 CISPEP 1 GLY A 44 PRO A 45 0 1.45 CRYST1 51.669 43.580 73.484 90.00 95.47 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019354 0.000000 0.001852 0.00000 SCALE2 0.000000 0.022946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013671 0.00000 CONECT 1795 2390 CONECT 1818 2390 CONECT 1932 2390 CONECT 2014 2390 CONECT 2081 2389 CONECT 2103 2389 CONECT 2165 2389 CONECT 2211 2389 CONECT 2389 2081 2103 2165 2211 CONECT 2390 1795 1818 1932 2014 MASTER 381 0 2 13 14 0 0 6 2569 3 10 24 END