HEADER OXIDOREDUCTASE 30-JUL-25 9PUC TITLE CRYSTAL STRUCTURE OF THERMOSTABLE VARIANT OF PHOSPHITE DEHYDROGENASE TITLE 2 FROM PSEUDOMONAS STUTZERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHONATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAD-DEPENDENT PHOSPHITE DEHYDROGENASE; COMPND 5 EC: 1.20.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STUTZERIMONAS STUTZERI ATCC 14405 = CCUG 16156; SOURCE 3 ORGANISM_TAXID: 32042; SOURCE 4 GENE: PTXD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,J.OSIPIUK,M.ENDRES,Y.PING,A.JOACHIMIAK,K.MICHALSKA REVDAT 1 05-AUG-26 9PUC 0 JRNL AUTH C.CHANG,J.OSIPIUK,M.ENDRES,Y.PING,A.JOACHIMIAK,K.MICHALSKA JRNL TITL CRYSTAL STRUCTURE OF THERMOSTABLE VARIANT OF PHOSPHITE JRNL TITL 2 DEHYDROGENASE FROM PSEUDOMONAS STUTZERI IN COMPLEX WITH NAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1426 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1741 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2521 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2682 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2662 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3669 ; 1.356 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6093 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 5.752 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;35.474 ;22.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;12.715 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;16.610 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3092 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 635 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1347 ; 1.120 ; 2.054 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1346 ; 1.120 ; 2.051 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1690 ; 1.804 ; 3.072 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1691 ; 1.803 ; 3.075 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1335 ; 1.626 ; 2.329 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1332 ; 1.613 ; 2.313 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1958 ; 2.659 ; 3.380 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3164 ; 5.537 ;17.598 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3032 ; 5.236 ;16.892 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 504 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5136 25.9034 23.6981 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.0489 REMARK 3 T33: 0.0144 T12: 0.0065 REMARK 3 T13: -0.0069 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.2523 L22: 0.3095 REMARK 3 L33: 0.4944 L12: 0.0984 REMARK 3 L13: 0.2050 L23: 0.1517 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.0572 S13: 0.0195 REMARK 3 S21: -0.0568 S22: -0.0166 S23: -0.0289 REMARK 3 S31: -0.1291 S32: 0.0542 S33: 0.0512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9PUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000298452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 21.00 REMARK 200 R MERGE (I) : 0.30700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 2.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, MES, PEG4000, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.50400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.00800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.50400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.00800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.50400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 93.00800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.50400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.00800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.50400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 LYS A 330 REMARK 465 ALA A 331 REMARK 465 ASN A 332 REMARK 465 PRO A 333 REMARK 465 ALA A 334 REMARK 465 ALA A 335 REMARK 465 ASP A 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 682 O HOH A 719 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 236 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 53.75 -90.00 REMARK 500 PHE A 78 36.61 -95.97 REMARK 500 MET A 153 55.67 -150.76 REMARK 500 ALA A 207 55.08 -146.21 REMARK 500 CYS A 236 -84.77 -101.91 REMARK 500 CYS A 236 -84.18 -102.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 775 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 776 DISTANCE = 6.23 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9PR0 RELATED DB: PDB REMARK 900 RELATED ID: 9PR2 RELATED DB: PDB REMARK 900 RELATED ID: 9PRV RELATED DB: PDB REMARK 900 RELATED ID: 9PU9 RELATED DB: PDB REMARK 900 RELATED ID: 9PU6 RELATED DB: PDB DBREF 9PUC A 1 336 UNP O69054 PTXD_STUST 1 336 SEQADV 9PUC SER A -2 UNP O69054 EXPRESSION TAG SEQADV 9PUC ASN A -1 UNP O69054 EXPRESSION TAG SEQADV 9PUC ALA A 0 UNP O69054 EXPRESSION TAG SEQADV 9PUC GLU A 13 UNP O69054 ASP 13 ENGINEERED MUTATION SEQADV 9PUC ILE A 26 UNP O69054 MET 26 ENGINEERED MUTATION SEQADV 9PUC ILE A 71 UNP O69054 VAL 71 ENGINEERED MUTATION SEQADV 9PUC GLU A 98 UNP O69054 ASP 98 ENGINEERED MUTATION SEQADV 9PUC LYS A 130 UNP O69054 GLU 130 ENGINEERED MUTATION SEQADV 9PUC ARG A 132 UNP O69054 GLN 132 ENGINEERED MUTATION SEQADV 9PUC ARG A 137 UNP O69054 GLN 137 ENGINEERED MUTATION SEQADV 9PUC PHE A 150 UNP O69054 ILE 150 ENGINEERED MUTATION SEQADV 9PUC SER A 155 UNP O69054 ALA 155 ENGINEERED MUTATION SEQADV 9PUC LEU A 215 UNP O69054 GLN 215 ENGINEERED MUTATION SEQADV 9PUC GLN A 275 UNP O69054 ARG 275 ENGINEERED MUTATION SEQADV 9PUC GLN A 276 UNP O69054 LEU 276 ENGINEERED MUTATION SEQADV 9PUC LEU A 313 UNP O69054 ILE 313 ENGINEERED MUTATION SEQADV 9PUC ALA A 315 UNP O69054 VAL 315 ENGINEERED MUTATION SEQADV 9PUC GLU A 319 UNP O69054 ALA 319 ENGINEERED MUTATION SEQADV 9PUC VAL A 325 UNP O69054 ALA 325 ENGINEERED MUTATION SEQADV 9PUC ASN A 332 UNP O69054 GLU 332 ENGINEERED MUTATION SEQADV 9PUC ASP A 336 UNP O69054 CYS 336 ENGINEERED MUTATION SEQRES 1 A 339 SER ASN ALA MET LEU PRO LYS LEU VAL ILE THR HIS ARG SEQRES 2 A 339 VAL HIS GLU GLU ILE LEU GLN LEU LEU ALA PRO HIS CYS SEQRES 3 A 339 GLU LEU ILE THR ASN GLN THR ASP SER THR LEU THR ARG SEQRES 4 A 339 GLU GLU ILE LEU ARG ARG CYS ARG ASP ALA GLN ALA MET SEQRES 5 A 339 MET ALA PHE MET PRO ASP ARG VAL ASP ALA ASP PHE LEU SEQRES 6 A 339 GLN ALA CYS PRO GLU LEU ARG VAL ILE GLY CYS ALA LEU SEQRES 7 A 339 LYS GLY PHE ASP ASN PHE ASP VAL ASP ALA CYS THR ALA SEQRES 8 A 339 ARG GLY VAL TRP LEU THR PHE VAL PRO GLU LEU LEU THR SEQRES 9 A 339 VAL PRO THR ALA GLU LEU ALA ILE GLY LEU ALA VAL GLY SEQRES 10 A 339 LEU GLY ARG HIS LEU ARG ALA ALA ASP ALA PHE VAL ARG SEQRES 11 A 339 SER GLY LYS PHE ARG GLY TRP GLN PRO ARG PHE TYR GLY SEQRES 12 A 339 THR GLY LEU ASP ASN ALA THR VAL GLY PHE LEU GLY MET SEQRES 13 A 339 GLY SER ILE GLY LEU ALA MET ALA ASP ARG LEU GLN GLY SEQRES 14 A 339 TRP GLY ALA THR LEU GLN TYR HIS GLU ALA LYS ALA LEU SEQRES 15 A 339 ASP THR GLN THR GLU GLN ARG LEU GLY LEU ARG GLN VAL SEQRES 16 A 339 ALA CYS SER GLU LEU PHE ALA SER SER ASP PHE ILE LEU SEQRES 17 A 339 LEU ALA LEU PRO LEU ASN ALA ASP THR LEU HIS LEU VAL SEQRES 18 A 339 ASN ALA GLU LEU LEU ALA LEU VAL ARG PRO GLY ALA LEU SEQRES 19 A 339 LEU VAL ASN PRO CYS ARG GLY SER VAL VAL ASP GLU ALA SEQRES 20 A 339 ALA VAL LEU ALA ALA LEU GLU ARG GLY GLN LEU GLY GLY SEQRES 21 A 339 TYR ALA ALA ASP VAL PHE GLU MET GLU ASP TRP ALA ARG SEQRES 22 A 339 ALA ASP ARG PRO GLN GLN ILE ASP PRO ALA LEU LEU ALA SEQRES 23 A 339 HIS PRO ASN THR LEU PHE THR PRO HIS ILE GLY SER ALA SEQRES 24 A 339 VAL ARG ALA VAL ARG LEU GLU ILE GLU ARG CYS ALA ALA SEQRES 25 A 339 GLN ASN ILE LEU GLN ALA LEU ALA GLY GLU ARG PRO ILE SEQRES 26 A 339 ASN ALA VAL ASN ARG LEU PRO LYS ALA ASN PRO ALA ALA SEQRES 27 A 339 ASP HET CL A 401 1 HET CL A 402 1 HET SO4 A 403 5 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 2 CL 2(CL 1-) FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *276(H2 O) HELIX 1 AA1 HIS A 12 ALA A 20 1 9 HELIX 2 AA2 THR A 35 ARG A 44 1 10 HELIX 3 AA3 ASP A 58 CYS A 65 1 8 HELIX 4 AA4 ASP A 82 ARG A 89 1 8 HELIX 5 AA5 LEU A 100 ARG A 117 1 18 HELIX 6 AA6 HIS A 118 SER A 128 1 11 HELIX 7 AA7 GLY A 154 LEU A 164 1 11 HELIX 8 AA8 ASP A 180 GLY A 188 1 9 HELIX 9 AA9 ALA A 193 SER A 201 1 9 HELIX 10 AB1 ASN A 219 ALA A 224 1 6 HELIX 11 AB2 ARG A 237 VAL A 241 5 5 HELIX 12 AB3 ASP A 242 ARG A 252 1 11 HELIX 13 AB4 PHE A 263 ASP A 267 5 5 HELIX 14 AB5 ASP A 278 ALA A 283 1 6 HELIX 15 AB6 VAL A 297 ALA A 317 1 21 SHEET 1 AA1 5 GLU A 24 ILE A 26 0 SHEET 2 AA1 5 LYS A 4 ILE A 7 1 N LEU A 5 O GLU A 24 SHEET 3 AA1 5 ALA A 48 ALA A 51 1 O MET A 50 N VAL A 6 SHEET 4 AA1 5 VAL A 70 CYS A 73 1 O GLY A 72 N MET A 49 SHEET 5 AA1 5 TRP A 92 THR A 94 1 O TRP A 92 N ILE A 71 SHEET 1 AA2 7 LEU A 189 GLN A 191 0 SHEET 2 AA2 7 THR A 170 HIS A 174 1 N TYR A 173 O ARG A 190 SHEET 3 AA2 7 THR A 147 LEU A 151 1 N VAL A 148 O THR A 170 SHEET 4 AA2 7 PHE A 203 LEU A 206 1 O PHE A 203 N GLY A 149 SHEET 5 AA2 7 ALA A 230 ASN A 234 1 O LEU A 231 N ILE A 204 SHEET 6 AA2 7 LEU A 255 ALA A 260 1 O ALA A 259 N ASN A 234 SHEET 7 AA2 7 THR A 287 PHE A 289 1 O LEU A 288 N ALA A 260 CRYST1 93.789 93.789 139.512 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010662 0.006156 0.000000 0.00000 SCALE2 0.000000 0.012312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007168 0.00000 CONECT 2619 2620 2621 2622 2623 CONECT 2620 2619 CONECT 2621 2619 CONECT 2622 2619 CONECT 2623 2619 MASTER 391 0 3 15 12 0 0 6 2804 1 5 27 END