HEADER GENE REGULATION/DNA 04-AUG-25 9PW1 TITLE CRYSTAL STRUCTURE OF TAYLORELLA EQUIGENITALIS BADTF3 DEAMINASE TOXIN TITLE 2 DDDB (N-TERMINALLY TRUNCATED) BOUND TO DOUBLE-STRANDED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BADTF3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA SUBSTRATE; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA SUBSTRATE; COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TAYLORELLA EQUIGENITALIS; SOURCE 3 ORGANISM_TAXID: 29575; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: TAYLORELLA EQUIGENITALIS; SOURCE 9 ORGANISM_TAXID: 29575; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: TAYLORELLA EQUIGENITALIS; SOURCE 13 ORGANISM_TAXID: 29575 KEYWDS DEAMINASE, GENE REGULATION, GENE REGULATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.YIN,K.SHI,H.AIHARA REVDAT 1 05-AUG-26 9PW1 0 JRNL AUTH L.YIN,K.SHI,H.AIHARA JRNL TITL STRUCTURAL BASIS OF DOUBLE-STRANDED DNA CYTOSINE DEAMINATION JRNL TITL 2 WITH RELAXED SEQUENCE DEPENDENCE BY A BADTF3 TOXIN DDDB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 7356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6100 - 4.2000 1.00 2689 138 0.1678 0.1910 REMARK 3 2 4.2000 - 3.3400 1.00 2551 139 0.2259 0.2779 REMARK 3 3 3.3400 - 2.9100 0.70 1743 96 0.2868 0.3108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : 0.056 231 REMARK 3 PLANARITY : 0.010 172 REMARK 3 DIHEDRAL : 25.598 587 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1951 THROUGH 1959 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6115 -15.8326 22.6265 REMARK 3 T TENSOR REMARK 3 T11: 0.9707 T22: 0.6965 REMARK 3 T33: 1.1685 T12: -0.1689 REMARK 3 T13: 0.1443 T23: 0.1100 REMARK 3 L TENSOR REMARK 3 L11: 4.6350 L22: 3.8949 REMARK 3 L33: 9.3013 L12: 3.0683 REMARK 3 L13: -1.0088 L23: 2.6624 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: -0.8975 S13: 0.4551 REMARK 3 S21: 0.2321 S22: 0.0751 S23: 0.4639 REMARK 3 S31: 1.0630 S32: 1.3117 S33: 0.2649 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1960 THROUGH 1972 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7240 -14.4815 18.4114 REMARK 3 T TENSOR REMARK 3 T11: 0.7991 T22: 0.8026 REMARK 3 T33: 1.5800 T12: -0.2810 REMARK 3 T13: -0.0274 T23: 0.1830 REMARK 3 L TENSOR REMARK 3 L11: 1.9913 L22: 4.6111 REMARK 3 L33: 7.6630 L12: 1.0805 REMARK 3 L13: 0.0946 L23: 0.3120 REMARK 3 S TENSOR REMARK 3 S11: -1.0858 S12: 0.9346 S13: 1.7271 REMARK 3 S21: -0.1194 S22: 0.1480 S23: 1.2173 REMARK 3 S31: -0.2166 S32: -1.1359 S33: 0.5733 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1973 THROUGH 1986 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6234 -29.8862 15.4580 REMARK 3 T TENSOR REMARK 3 T11: 1.3599 T22: 0.7382 REMARK 3 T33: 1.2780 T12: 0.2585 REMARK 3 T13: 0.1417 T23: 0.2668 REMARK 3 L TENSOR REMARK 3 L11: 8.9700 L22: 2.7226 REMARK 3 L33: 7.5322 L12: 2.3398 REMARK 3 L13: -5.0560 L23: 1.8417 REMARK 3 S TENSOR REMARK 3 S11: -0.4736 S12: 0.6375 S13: -1.7128 REMARK 3 S21: -0.0963 S22: -0.5639 S23: -0.2960 REMARK 3 S31: 0.6104 S32: -0.8598 S33: 0.6124 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1987 THROUGH 2001 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2322 -21.8436 14.5587 REMARK 3 T TENSOR REMARK 3 T11: 0.9739 T22: 0.7165 REMARK 3 T33: 0.9192 T12: 0.0047 REMARK 3 T13: -0.0611 T23: 0.2474 REMARK 3 L TENSOR REMARK 3 L11: 8.6610 L22: 2.7949 REMARK 3 L33: 5.7436 L12: 2.4625 REMARK 3 L13: -3.5426 L23: 2.0103 REMARK 3 S TENSOR REMARK 3 S11: -0.9303 S12: 0.6158 S13: -0.0055 REMARK 3 S21: -0.1058 S22: 0.9242 S23: 0.0116 REMARK 3 S31: 1.6016 S32: 0.2832 S33: 0.3293 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2002 THROUGH 2008 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9898 -14.4628 8.6025 REMARK 3 T TENSOR REMARK 3 T11: 1.0742 T22: 1.1174 REMARK 3 T33: 1.6527 T12: -0.3052 REMARK 3 T13: -0.2505 T23: 0.5231 REMARK 3 L TENSOR REMARK 3 L11: 6.9787 L22: 5.1834 REMARK 3 L33: 9.4682 L12: -5.8522 REMARK 3 L13: 3.1441 L23: -1.1723 REMARK 3 S TENSOR REMARK 3 S11: 0.6011 S12: 1.9439 S13: -1.2561 REMARK 3 S21: -0.9471 S22: -0.6451 S23: 2.3065 REMARK 3 S31: 0.5084 S32: -1.2776 S33: -0.0454 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2009 THROUGH 2014 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6366 -10.8042 18.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.6788 T22: 0.4937 REMARK 3 T33: 1.0518 T12: 0.0417 REMARK 3 T13: 0.0090 T23: 0.2782 REMARK 3 L TENSOR REMARK 3 L11: 4.0761 L22: 4.1724 REMARK 3 L33: 8.9615 L12: -2.2174 REMARK 3 L13: 0.8130 L23: 3.3307 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: 0.7056 S13: 0.1251 REMARK 3 S21: 0.5443 S22: -0.4426 S23: 0.7208 REMARK 3 S31: -0.2762 S32: -2.0372 S33: -0.0666 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2015 THROUGH 2019 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7913 -11.8995 21.1432 REMARK 3 T TENSOR REMARK 3 T11: 0.5494 T22: 0.5815 REMARK 3 T33: 0.9603 T12: 0.0208 REMARK 3 T13: -0.1868 T23: 0.3249 REMARK 3 L TENSOR REMARK 3 L11: 5.7554 L22: 9.2366 REMARK 3 L33: 8.5869 L12: -1.3639 REMARK 3 L13: -1.8100 L23: 4.6818 REMARK 3 S TENSOR REMARK 3 S11: 0.6925 S12: -1.0739 S13: -0.3957 REMARK 3 S21: 0.6254 S22: -0.6578 S23: 0.5355 REMARK 3 S31: 0.9316 S32: 1.1475 S33: -0.1590 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2020 THROUGH 2043 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6895 -10.4300 12.0732 REMARK 3 T TENSOR REMARK 3 T11: 0.6094 T22: 0.6713 REMARK 3 T33: 0.8673 T12: -0.0615 REMARK 3 T13: -0.1298 T23: 0.3434 REMARK 3 L TENSOR REMARK 3 L11: 5.8389 L22: 6.9615 REMARK 3 L33: 4.8486 L12: -1.3713 REMARK 3 L13: -1.0516 L23: 1.6911 REMARK 3 S TENSOR REMARK 3 S11: 0.2291 S12: 1.2287 S13: 0.2940 REMARK 3 S21: -0.1888 S22: -0.2125 S23: 0.6360 REMARK 3 S31: 0.5144 S32: -0.5147 S33: -0.0990 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2044 THROUGH 2054 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6836 -3.1378 17.5128 REMARK 3 T TENSOR REMARK 3 T11: 0.6235 T22: 0.5596 REMARK 3 T33: 1.0993 T12: 0.1260 REMARK 3 T13: 0.0256 T23: 0.3915 REMARK 3 L TENSOR REMARK 3 L11: 4.7021 L22: 7.0180 REMARK 3 L33: 2.0891 L12: 0.6908 REMARK 3 L13: -1.2020 L23: 3.3127 REMARK 3 S TENSOR REMARK 3 S11: -0.9145 S12: 0.7938 S13: 0.3888 REMARK 3 S21: -0.5931 S22: 0.2658 S23: 0.1182 REMARK 3 S31: -0.4725 S32: -0.1570 S33: -0.6196 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4408 -20.0259 14.8644 REMARK 3 T TENSOR REMARK 3 T11: 1.3089 T22: 1.1298 REMARK 3 T33: 1.0398 T12: 0.5059 REMARK 3 T13: -0.0385 T23: 0.2908 REMARK 3 L TENSOR REMARK 3 L11: 0.8266 L22: 4.3154 REMARK 3 L33: 0.7103 L12: -0.3105 REMARK 3 L13: 0.7963 L23: -0.3395 REMARK 3 S TENSOR REMARK 3 S11: -0.1390 S12: -0.2424 S13: -0.4422 REMARK 3 S21: -0.4327 S22: -0.2354 S23: -0.7709 REMARK 3 S31: 1.7344 S32: 1.2336 S33: 0.4329 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.2959 -18.4699 14.4746 REMARK 3 T TENSOR REMARK 3 T11: 1.2811 T22: 1.1477 REMARK 3 T33: 1.1202 T12: 0.2669 REMARK 3 T13: -0.0702 T23: 0.3277 REMARK 3 L TENSOR REMARK 3 L11: 5.0480 L22: 5.6987 REMARK 3 L33: 8.5237 L12: -2.6734 REMARK 3 L13: 2.4338 L23: -3.0494 REMARK 3 S TENSOR REMARK 3 S11: 0.6413 S12: -0.2087 S13: -0.5675 REMARK 3 S21: 0.0027 S22: -0.7204 S23: -0.9492 REMARK 3 S31: 1.9478 S32: 1.6190 S33: 0.1853 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000290264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7362 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 126.972 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 3.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: J000778, C01_10 0.2 M, MAGNESIUM REMARK 280 ACETATE, 20 % W/V, POLYETHYLENE GLYCOL 3350, PH 7.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 89.78250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 89.78250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 21.92900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 89.78250 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 89.78250 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 21.92900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 89.78250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 89.78250 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 21.92900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 89.78250 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 89.78250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 21.92900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 89.78250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 89.78250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 21.92900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 89.78250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 89.78250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 21.92900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 89.78250 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 89.78250 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 21.92900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 89.78250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 89.78250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 21.92900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 1980 ND2 ASN A 1988 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP2 DC E 14 O5' DG F 1 15546 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG F 7 O3' DG F 7 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 7 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC E 8 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC F 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1975 70.56 55.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1993 ND1 REMARK 620 2 CYS A2019 SG 117.8 REMARK 620 3 CYS A2022 SG 123.5 107.3 REMARK 620 4 HOH E 101 O 115.0 96.2 90.7 REMARK 620 N 1 2 3 DBREF 9PW1 A 1951 2054 PDB 9PW1 9PW1 1951 2054 DBREF 9PW1 E 1 14 PDB 9PW1 9PW1 1 14 DBREF 9PW1 F 1 14 PDB 9PW1 9PW1 1 14 SEQRES 1 A 104 MET HIS LYS ALA THR VAL THR VAL THR ASP LYS ASN GLY SEQRES 2 A 104 VAL VAL LYS HIS LYS SER ASN LEU VAL SER GLY ASN MET SEQRES 3 A 104 THR GLU ALA GLU LYS LYS LEU GLY PHE PRO ASN ASN SER SEQRES 4 A 104 LEU ALA THR HIS THR ALA ASN ARG ALA THR ARG LEU ILE SEQRES 5 A 104 ASP LEU ASN GLN GLY ASP THR MET LEU ILE GLU GLY GLN SEQRES 6 A 104 TYR ARG PRO CYS PRO ARG CYS LYS GLY ALA MET ARG VAL SEQRES 7 A 104 LYS ALA GLU GLU SER GLY ALA LYS VAL ILE TYR THR TRP SEQRES 8 A 104 PRO GLU ASP GLY ASP LEU LYS LYS ARG GLU TRP GLU GLY SEQRES 1 E 14 DG DC DA DA DG DT DT DC DG DG DC DT DA SEQRES 2 E 14 DC SEQRES 1 F 14 DG DT DA DG DC DC DG DA DA DC DT DT DG SEQRES 2 F 14 DC HET ZN A2101 1 HET ACT F 101 7 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 4 ZN ZN 2+ FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *3(H2 O) HELIX 1 AA1 THR A 1977 LYS A 1982 1 6 HELIX 2 AA2 PRO A 1986 HIS A 1993 1 8 HELIX 3 AA3 HIS A 1993 ILE A 2002 1 10 HELIX 4 AA4 CYS A 2019 GLY A 2034 1 16 SHEET 1 AA1 5 VAL A1965 VAL A1972 0 SHEET 2 AA1 5 LYS A1953 THR A1959 -1 N ALA A1954 O LEU A1971 SHEET 3 AA1 5 THR A2009 GLU A2013 -1 O LEU A2011 N THR A1957 SHEET 4 AA1 5 LYS A2036 GLU A2043 1 O ILE A2038 N ILE A2012 SHEET 5 AA1 5 ASP A2046 GLU A2053 -1 O ARG A2050 N TYR A2039 LINK ND1 HIS A1993 ZN ZN A2101 1555 1555 2.05 LINK SG CYS A2019 ZN ZN A2101 1555 1555 2.16 LINK SG CYS A2022 ZN ZN A2101 1555 1555 2.11 LINK ZN ZN A2101 O HOH E 101 1555 1555 2.02 CISPEP 1 PHE A 1985 PRO A 1986 0 10.65 CRYST1 179.565 179.565 43.858 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022801 0.00000 CONECT 320 1380 CONECT 527 1380 CONECT 551 1380 CONECT 1380 320 527 551 1388 CONECT 1381 1382 1383 1384 CONECT 1382 1381 CONECT 1383 1381 CONECT 1384 1381 1385 1386 1387 CONECT 1385 1384 CONECT 1386 1384 CONECT 1387 1384 CONECT 1388 1380 MASTER 508 0 2 4 5 0 0 6 1384 3 12 12 END