HEADER PROTEIN BINDING 07-AUG-25 9PYA TITLE MENIN MUTANT - G331D IN COMPLEX WITH ZIFTOMENIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MENIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEN1, SCG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.D.CLEGG,J.M.RAY,T.CIERPICKI,J.GREMBECKA REVDAT 1 28-OCT-26 9PYA 0 JRNL AUTH B.D.CLEGG,J.M.RAY,T.CIERPICKI,J.GREMBECKA JRNL TITL MENIN MUTANT - G331D IN COMPLEX WITH ZIFTOMENIB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 86731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.078 REMARK 3 FREE R VALUE TEST SET COUNT : 4404 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5668 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 284 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 476 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15600 REMARK 3 B22 (A**2) : -0.20100 REMARK 3 B33 (A**2) : -0.95500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.071 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4106 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3913 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5599 ; 2.032 ; 1.846 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8995 ; 0.691 ; 1.762 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 5.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ; 8.910 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 693 ;12.153 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4925 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 960 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 848 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 120 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2017 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1989 ; 2.151 ; 1.759 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1989 ; 2.148 ; 1.760 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2516 ; 3.294 ; 3.149 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2517 ; 3.294 ; 3.150 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2117 ; 3.183 ; 2.079 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2118 ; 3.183 ; 2.080 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3076 ; 4.817 ; 3.646 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3077 ; 4.816 ; 3.647 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9PYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000298197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M HEPES, PH REMARK 280 7.5, 25% (W/V) PEG-3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.45850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.16650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.16650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.45850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 538 REMARK 465 ALA A 539 REMARK 465 PRO A 540 REMARK 465 ALA A 541 REMARK 465 ALA A 542 REMARK 465 LYS A 589 REMARK 465 GLN A 590 REMARK 465 LYS A 591 REMARK 465 VAL A 592 REMARK 465 SER A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 460 CG1 CG2 REMARK 470 GLN A 586 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 207 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 CYS A 329 CB - CA - C ANGL. DEV. = 8.1 DEGREES REMARK 500 GLU A 366 CB - CG - CD ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 446 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 77 -61.15 -156.88 REMARK 500 SER A 178 -164.33 -101.67 REMARK 500 ASP A 180 14.83 -146.47 REMARK 500 SER A 226 44.35 -89.44 REMARK 500 ASN A 333 79.98 -104.82 REMARK 500 ASP A 370 -56.54 -134.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 21 0.09 SIDE CHAIN REMARK 500 ARG A 207 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1176 DISTANCE = 5.99 ANGSTROMS DBREF 9PYA A 1 593 UNP O00255 MEN1_HUMAN 1 593 SEQADV 9PYA GLY A -4 UNP O00255 EXPRESSION TAG SEQADV 9PYA GLY A -3 UNP O00255 EXPRESSION TAG SEQADV 9PYA SER A -2 UNP O00255 EXPRESSION TAG SEQADV 9PYA SER A -1 UNP O00255 EXPRESSION TAG SEQADV 9PYA SER A 0 UNP O00255 EXPRESSION TAG SEQADV 9PYA A UNP O00255 ILE 54 DELETION SEQADV 9PYA A UNP O00255 PRO 55 DELETION SEQADV 9PYA A UNP O00255 THR 56 DELETION SEQADV 9PYA A UNP O00255 ASN 57 DELETION SEQADV 9PYA A UNP O00255 VAL 58 DELETION SEQADV 9PYA A UNP O00255 PRO 59 DELETION SEQADV 9PYA A UNP O00255 GLU 60 DELETION SEQADV 9PYA A UNP O00255 LEU 61 DELETION SEQADV 9PYA A UNP O00255 THR 62 DELETION SEQADV 9PYA A UNP O00255 PHE 63 DELETION SEQADV 9PYA A UNP O00255 GLN 64 DELETION SEQADV 9PYA A UNP O00255 PRO 65 DELETION SEQADV 9PYA A UNP O00255 SER 66 DELETION SEQADV 9PYA A UNP O00255 PRO 67 DELETION SEQADV 9PYA A UNP O00255 ALA 68 DELETION SEQADV 9PYA A UNP O00255 PRO 69 DELETION SEQADV 9PYA A UNP O00255 ASP 70 DELETION SEQADV 9PYA A UNP O00255 PRO 71 DELETION SEQADV 9PYA A UNP O00255 PRO 72 DELETION SEQADV 9PYA A UNP O00255 GLY 73 DELETION SEQADV 9PYA ASP A 326 UNP O00255 GLY 326 ENGINEERED MUTATION SEQADV 9PYA A UNP O00255 GLU 387 DELETION SEQADV 9PYA A UNP O00255 GLU 388 DELETION SEQADV 9PYA A UNP O00255 ARG 389 DELETION SEQADV 9PYA A UNP O00255 PRO 390 DELETION SEQADV 9PYA A UNP O00255 GLY 391 DELETION SEQADV 9PYA A UNP O00255 GLU 392 DELETION SEQADV 9PYA A UNP O00255 GLN 393 DELETION SEQADV 9PYA A UNP O00255 SER 394 DELETION SEQADV 9PYA A UNP O00255 GLN 395 DELETION SEQADV 9PYA A UNP O00255 GLY 396 DELETION SEQADV 9PYA A UNP O00255 THR 397 DELETION SEQADV 9PYA A UNP O00255 GLN 398 DELETION SEQADV 9PYA A UNP O00255 ARG 460 DELETION SEQADV 9PYA A UNP O00255 GLU 461 DELETION SEQADV 9PYA A UNP O00255 ALA 462 DELETION SEQADV 9PYA A UNP O00255 GLU 463 DELETION SEQADV 9PYA A UNP O00255 ALA 464 DELETION SEQADV 9PYA A UNP O00255 ALA 465 DELETION SEQADV 9PYA A UNP O00255 GLU 466 DELETION SEQADV 9PYA A UNP O00255 ALA 467 DELETION SEQADV 9PYA A UNP O00255 GLU 468 DELETION SEQADV 9PYA A UNP O00255 GLU 469 DELETION SEQADV 9PYA A UNP O00255 PRO 470 DELETION SEQADV 9PYA A UNP O00255 TRP 471 DELETION SEQADV 9PYA A UNP O00255 GLY 472 DELETION SEQADV 9PYA A UNP O00255 GLU 473 DELETION SEQADV 9PYA A UNP O00255 GLU 474 DELETION SEQADV 9PYA A UNP O00255 ALA 475 DELETION SEQADV 9PYA A UNP O00255 ARG 476 DELETION SEQADV 9PYA A UNP O00255 GLU 477 DELETION SEQADV 9PYA A UNP O00255 GLY 478 DELETION SEQADV 9PYA A UNP O00255 ARG 479 DELETION SEQADV 9PYA A UNP O00255 ARG 480 DELETION SEQADV 9PYA A UNP O00255 ARG 481 DELETION SEQADV 9PYA A UNP O00255 GLY 482 DELETION SEQADV 9PYA A UNP O00255 PRO 483 DELETION SEQADV 9PYA A UNP O00255 ARG 484 DELETION SEQADV 9PYA A UNP O00255 ARG 485 DELETION SEQADV 9PYA A UNP O00255 GLU 486 DELETION SEQADV 9PYA A UNP O00255 SER 487 DELETION SEQADV 9PYA A UNP O00255 LYS 488 DELETION SEQADV 9PYA A UNP O00255 PRO 489 DELETION SEQADV 9PYA A UNP O00255 GLU 490 DELETION SEQADV 9PYA A UNP O00255 GLU 491 DELETION SEQADV 9PYA A UNP O00255 PRO 492 DELETION SEQADV 9PYA A UNP O00255 PRO 493 DELETION SEQADV 9PYA A UNP O00255 PRO 494 DELETION SEQADV 9PYA A UNP O00255 PRO 495 DELETION SEQADV 9PYA A UNP O00255 LYS 496 DELETION SEQADV 9PYA A UNP O00255 LYS 497 DELETION SEQADV 9PYA A UNP O00255 PRO 498 DELETION SEQADV 9PYA A UNP O00255 ALA 499 DELETION SEQADV 9PYA A UNP O00255 LEU 500 DELETION SEQADV 9PYA A UNP O00255 ASP 501 DELETION SEQADV 9PYA A UNP O00255 LYS 502 DELETION SEQADV 9PYA A UNP O00255 GLY 503 DELETION SEQADV 9PYA A UNP O00255 LEU 504 DELETION SEQADV 9PYA A UNP O00255 GLY 505 DELETION SEQADV 9PYA A UNP O00255 THR 506 DELETION SEQADV 9PYA A UNP O00255 GLY 507 DELETION SEQADV 9PYA A UNP O00255 GLN 508 DELETION SEQADV 9PYA A UNP O00255 GLY 509 DELETION SEQADV 9PYA A UNP O00255 ALA 510 DELETION SEQADV 9PYA A UNP O00255 VAL 511 DELETION SEQADV 9PYA A UNP O00255 SER 512 DELETION SEQADV 9PYA A UNP O00255 GLY 513 DELETION SEQADV 9PYA A UNP O00255 PRO 514 DELETION SEQADV 9PYA A UNP O00255 PRO 515 DELETION SEQADV 9PYA A UNP O00255 ARG 516 DELETION SEQADV 9PYA A UNP O00255 LYS 517 DELETION SEQADV 9PYA A UNP O00255 PRO 518 DELETION SEQADV 9PYA A UNP O00255 PRO 519 DELETION SEQADV 9PYA A UNP O00255 GLY 520 DELETION SEQADV 9PYA A UNP O00255 THR 521 DELETION SEQADV 9PYA A UNP O00255 VAL 522 DELETION SEQADV 9PYA A UNP O00255 ALA 523 DELETION SEQADV 9PYA A UNP O00255 GLY 524 DELETION SEQADV 9PYA A UNP O00255 THR 525 DELETION SEQADV 9PYA A UNP O00255 ALA 526 DELETION SEQADV 9PYA A UNP O00255 ARG 527 DELETION SEQADV 9PYA A UNP O00255 GLY 528 DELETION SEQADV 9PYA A UNP O00255 PRO 529 DELETION SEQADV 9PYA A UNP O00255 GLU 530 DELETION SEQADV 9PYA A UNP O00255 GLY 531 DELETION SEQADV 9PYA A UNP O00255 GLY 532 DELETION SEQADV 9PYA A UNP O00255 SER 533 DELETION SEQADV 9PYA A UNP O00255 THR 534 DELETION SEQADV 9PYA A UNP O00255 ALA 535 DELETION SEQADV 9PYA A UNP O00255 GLN 536 DELETION SEQADV 9PYA ALA A 541 UNP O00255 THR 541 CONFLICT SEQRES 1 A 489 GLY GLY SER SER SER MET GLY LEU LYS ALA ALA GLN LYS SEQRES 2 A 489 THR LEU PHE PRO LEU ARG SER ILE ASP ASP VAL VAL ARG SEQRES 3 A 489 LEU PHE ALA ALA GLU LEU GLY ARG GLU GLU PRO ASP LEU SEQRES 4 A 489 VAL LEU LEU SER LEU VAL LEU GLY PHE VAL GLU HIS PHE SEQRES 5 A 489 LEU ALA VAL ASN ARG VAL GLY LEU THR TYR PHE PRO VAL SEQRES 6 A 489 ALA ASP LEU SER ILE ILE ALA ALA LEU TYR ALA ARG PHE SEQRES 7 A 489 THR ALA GLN ILE ARG GLY ALA VAL ASP LEU SER LEU TYR SEQRES 8 A 489 PRO ARG GLU GLY GLY VAL SER SER ARG GLU LEU VAL LYS SEQRES 9 A 489 LYS VAL SER ASP VAL ILE TRP ASN SER LEU SER ARG SER SEQRES 10 A 489 TYR PHE LYS ASP ARG ALA HIS ILE GLN SER LEU PHE SER SEQRES 11 A 489 PHE ILE THR GLY THR LYS LEU ASP SER SER GLY VAL ALA SEQRES 12 A 489 PHE ALA VAL VAL GLY ALA CYS GLN ALA LEU GLY LEU ARG SEQRES 13 A 489 ASP VAL HIS LEU ALA LEU SER GLU ASP HIS ALA TRP VAL SEQRES 14 A 489 VAL PHE GLY PRO ASN GLY GLU GLN THR ALA GLU VAL THR SEQRES 15 A 489 TRP HIS GLY LYS GLY ASN GLU ASP ARG ARG GLY GLN THR SEQRES 16 A 489 VAL ASN ALA GLY VAL ALA GLU ARG SER TRP LEU TYR LEU SEQRES 17 A 489 LYS GLY SER TYR MET ARG CYS ASP ARG LYS MET GLU VAL SEQRES 18 A 489 ALA PHE MET VAL CYS ALA ILE ASN PRO SER ILE ASP LEU SEQRES 19 A 489 HIS THR ASP SER LEU GLU LEU LEU GLN LEU GLN GLN LYS SEQRES 20 A 489 LEU LEU TRP LEU LEU TYR ASP LEU GLY HIS LEU GLU ARG SEQRES 21 A 489 TYR PRO MET ALA LEU GLY ASN LEU ALA ASP LEU GLU GLU SEQRES 22 A 489 LEU GLU PRO THR PRO GLY ARG PRO ASP PRO LEU THR LEU SEQRES 23 A 489 TYR HIS LYS GLY ILE ALA SER ALA LYS THR TYR TYR ARG SEQRES 24 A 489 ASP GLU HIS ILE TYR PRO TYR MET TYR LEU ALA ASP TYR SEQRES 25 A 489 HIS CYS ARG ASN ARG ASN VAL ARG GLU ALA LEU GLN ALA SEQRES 26 A 489 TRP ALA ASP THR ALA THR VAL ILE GLN ASP TYR ASN TYR SEQRES 27 A 489 CYS ARG GLU ASP GLU GLU ILE TYR LYS GLU PHE PHE GLU SEQRES 28 A 489 VAL ALA ASN ASP VAL ILE PRO ASN LEU LEU LYS GLU ALA SEQRES 29 A 489 ALA SER LEU LEU GLU ALA GLY SER GLN GLY SER ALA LEU SEQRES 30 A 489 GLN ASP PRO GLU CYS PHE ALA HIS LEU LEU ARG PHE TYR SEQRES 31 A 489 ASP GLY ILE CYS LYS TRP GLU GLU GLY SER PRO THR PRO SEQRES 32 A 489 VAL LEU HIS VAL GLY TRP ALA THR PHE LEU VAL GLN SER SEQRES 33 A 489 LEU GLY ARG PHE GLU GLY GLN VAL ARG GLN LYS VAL ARG SEQRES 34 A 489 ILE VAL SER VAL PRO ALA PRO ALA ALA SER PRO PRO PRO SEQRES 35 A 489 GLU GLY PRO VAL LEU THR PHE GLN SER GLU LYS MET LYS SEQRES 36 A 489 GLY MET LYS GLU LEU LEU VAL ALA THR LYS ILE ASN SER SEQRES 37 A 489 SER ALA ILE LYS LEU GLN LEU THR ALA GLN SER GLN VAL SEQRES 38 A 489 GLN MET LYS LYS GLN LYS VAL SER HET K5O A 601 91 HET DMS A 602 10 HET EDO A 603 10 HET DMS A 604 10 HET DMS A 605 10 HET SO4 A 606 5 HET EDO A 607 10 HET PG4 A 608 31 HETNAM K5O ZIFTOMENIB HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 K5O C33 H42 F3 N9 O2 S2 FORMUL 3 DMS 3(C2 H6 O S) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 SO4 O4 S 2- FORMUL 9 PG4 C8 H18 O5 FORMUL 10 HOH *476(H2 O) HELIX 1 AA1 LYS A 4 THR A 9 1 6 HELIX 2 AA2 SER A 15 GLY A 28 1 14 HELIX 3 AA3 ASP A 33 VAL A 50 1 18 HELIX 4 AA4 ASP A 82 VAL A 101 1 20 HELIX 5 AA5 ASP A 102 TYR A 106 5 5 HELIX 6 AA6 SER A 114 LEU A 129 1 16 HELIX 7 AA7 SER A 142 THR A 150 1 9 HELIX 8 AA8 ASP A 153 LEU A 168 1 16 HELIX 9 AA9 GLY A 187 GLU A 191 5 5 HELIX 10 AB1 VAL A 211 GLU A 217 1 7 HELIX 11 AB2 SER A 219 SER A 226 5 8 HELIX 12 AB3 ASP A 231 ALA A 242 1 12 HELIX 13 AB4 SER A 253 LEU A 270 1 18 HELIX 14 AB5 TYR A 276 GLU A 290 1 15 HELIX 15 AB6 ASP A 297 TYR A 313 1 17 HELIX 16 AB7 ILE A 318 ASN A 331 1 14 HELIX 17 AB8 ASN A 333 GLN A 349 1 17 HELIX 18 AB9 ASP A 357 ASP A 370 1 14 HELIX 19 AC1 ASP A 370 ALA A 385 1 16 HELIX 20 AC2 SER A 402 GLN A 405 5 4 HELIX 21 AC3 ASP A 406 GLU A 425 1 20 HELIX 22 AC4 HIS A 433 ARG A 446 1 14 HELIX 23 AC5 GLU A 448 GLN A 453 1 6 HELIX 24 AC6 SER A 555 LYS A 562 1 8 HELIX 25 AC7 GLU A 563 ALA A 567 5 5 HELIX 26 AC8 ASN A 571 ALA A 581 1 11 SHEET 1 AA1 4 GLN A 192 ALA A 194 0 SHEET 2 AA1 4 ALA A 182 PHE A 186 -1 N VAL A 184 O ALA A 194 SHEET 3 AA1 4 HIS A 174 LEU A 177 -1 N ALA A 176 O TRP A 183 SHEET 4 AA1 4 MET A 228 ARG A 229 -1 O MET A 228 N LEU A 177 SHEET 1 AA2 2 SER A 246 ASP A 248 0 SHEET 2 AA2 2 THR A 251 ASP A 252 -1 O THR A 251 N ILE A 247 SHEET 1 AA3 2 ARG A 456 ILE A 457 0 SHEET 2 AA3 2 VAL A 550 LEU A 551 1 O LEU A 551 N ARG A 456 CISPEP 1 PHE A 11 PRO A 12 0 1.26 CRYST1 48.917 80.050 124.333 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008043 0.00000 CONECT 7854 7855 7903 7904 7905 CONECT 7855 7854 7856 7906 CONECT 7856 7855 7857 7902 CONECT 7857 7856 7858 CONECT 7858 7857 7859 7892 CONECT 7859 7858 7860 7907 CONECT 7860 7859 7861 7891 7908 CONECT 7861 7860 7862 7909 7910 CONECT 7862 7861 7863 7911 7912 CONECT 7863 7862 7864 7890 CONECT 7864 7863 7865 7913 7914 CONECT 7865 7864 7866 7886 CONECT 7866 7865 7867 7915 CONECT 7867 7866 7868 7916 CONECT 7868 7867 7869 7885 CONECT 7869 7868 7870 7883 CONECT 7870 7869 7871 7917 7918 CONECT 7871 7870 7872 7873 7919 CONECT 7872 7871 7920 7921 7922 CONECT 7873 7871 7874 7878 CONECT 7874 7873 7875 7923 7924 CONECT 7875 7874 7876 7925 7926 CONECT 7876 7875 7877 7879 CONECT 7877 7876 7878 7927 7928 CONECT 7878 7873 7877 7929 7930 CONECT 7879 7876 7880 7881 7882 CONECT 7880 7879 7931 7932 7933 CONECT 7881 7879 CONECT 7882 7879 CONECT 7883 7869 7884 7888 CONECT 7884 7883 7885 7934 CONECT 7885 7868 7884 7886 CONECT 7886 7865 7885 7887 CONECT 7887 7886 7935 7936 7937 CONECT 7888 7883 7889 CONECT 7889 7888 CONECT 7890 7863 7891 7938 7939 CONECT 7891 7860 7890 7940 7941 CONECT 7892 7858 7893 7901 CONECT 7893 7892 7894 7942 CONECT 7894 7893 7895 7900 CONECT 7895 7894 7896 7943 7944 CONECT 7896 7895 7897 7898 7899 CONECT 7897 7896 CONECT 7898 7896 CONECT 7899 7896 CONECT 7900 7894 7901 CONECT 7901 7892 7900 7902 CONECT 7902 7856 7901 CONECT 7903 7854 CONECT 7904 7854 CONECT 7905 7854 CONECT 7906 7855 CONECT 7907 7859 CONECT 7908 7860 CONECT 7909 7861 CONECT 7910 7861 CONECT 7911 7862 CONECT 7912 7862 CONECT 7913 7864 CONECT 7914 7864 CONECT 7915 7866 CONECT 7916 7867 CONECT 7917 7870 CONECT 7918 7870 CONECT 7919 7871 CONECT 7920 7872 CONECT 7921 7872 CONECT 7922 7872 CONECT 7923 7874 CONECT 7924 7874 CONECT 7925 7875 CONECT 7926 7875 CONECT 7927 7877 CONECT 7928 7877 CONECT 7929 7878 CONECT 7930 7878 CONECT 7931 7880 CONECT 7932 7880 CONECT 7933 7880 CONECT 7934 7884 CONECT 7935 7887 CONECT 7936 7887 CONECT 7937 7887 CONECT 7938 7890 CONECT 7939 7890 CONECT 7940 7891 CONECT 7941 7891 CONECT 7942 7893 CONECT 7943 7895 CONECT 7944 7895 CONECT 7945 7946 7947 7948 CONECT 7946 7945 CONECT 7947 7945 7949 7950 7951 CONECT 7948 7945 7952 7953 7954 CONECT 7949 7947 CONECT 7950 7947 CONECT 7951 7947 CONECT 7952 7948 CONECT 7953 7948 CONECT 7954 7948 CONECT 7955 7956 7957 7959 7960 CONECT 7956 7955 7961 CONECT 7957 7955 7958 7962 7963 CONECT 7958 7957 7964 CONECT 7959 7955 CONECT 7960 7955 CONECT 7961 7956 CONECT 7962 7957 CONECT 7963 7957 CONECT 7964 7958 CONECT 7965 7966 7967 7968 CONECT 7966 7965 CONECT 7967 7965 7969 7970 7971 CONECT 7968 7965 7972 7973 7974 CONECT 7969 7967 CONECT 7970 7967 CONECT 7971 7967 CONECT 7972 7968 CONECT 7973 7968 CONECT 7974 7968 CONECT 7975 7976 7977 7978 CONECT 7976 7975 CONECT 7977 7975 7979 7980 7981 CONECT 7978 7975 7982 7983 7984 CONECT 7979 7977 CONECT 7980 7977 CONECT 7981 7977 CONECT 7982 7978 CONECT 7983 7978 CONECT 7984 7978 CONECT 7985 7986 7987 7988 7989 CONECT 7986 7985 CONECT 7987 7985 CONECT 7988 7985 CONECT 7989 7985 CONECT 7990 7991 7992 7994 7995 CONECT 7991 7990 7996 CONECT 7992 7990 7993 7997 7998 CONECT 7993 7992 7999 CONECT 7994 7990 CONECT 7995 7990 CONECT 7996 7991 CONECT 7997 7992 CONECT 7998 7992 CONECT 7999 7993 CONECT 8000 8001 8013 CONECT 8001 8000 8002 8014 8015 CONECT 8002 8001 8003 8016 8017 CONECT 8003 8002 8004 CONECT 8004 8003 8005 8018 8019 CONECT 8005 8004 8006 8020 8021 CONECT 8006 8005 8007 CONECT 8007 8006 8008 8022 8023 CONECT 8008 8007 8009 8024 8025 CONECT 8009 8008 8010 CONECT 8010 8009 8011 8026 8027 CONECT 8011 8010 8012 8028 8029 CONECT 8012 8011 8030 CONECT 8013 8000 CONECT 8014 8001 CONECT 8015 8001 CONECT 8016 8002 CONECT 8017 8002 CONECT 8018 8004 CONECT 8019 8004 CONECT 8020 8005 CONECT 8021 8005 CONECT 8022 8007 CONECT 8023 8007 CONECT 8024 8008 CONECT 8025 8008 CONECT 8026 8010 CONECT 8027 8010 CONECT 8028 8011 CONECT 8029 8011 CONECT 8030 8012 MASTER 343 0 8 26 8 0 0 6 4300 1 177 38 END