data_9Q1D # _entry.id 9Q1D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9Q1D pdb_00009q1d 10.2210/pdb9q1d/pdb WWPDB D_1000298813 ? ? EMDB EMD-72124 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-08-27 ? 2 'EM metadata' 1 0 2025-08-27 ? 3 'Additional map' 1 0 2025-08-27 1 4 FSC 1 0 2025-08-27 ? 5 'Half map' 1 0 2025-08-27 1 6 'Half map' 1 0 2025-08-27 2 7 Image 1 0 2025-08-27 ? 8 Mask 1 0 2025-08-27 1 9 'Primary map' 1 0 2025-08-27 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9Q1D _pdbx_database_status.recvd_initial_deposition_date 2025-08-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'The same protein that was unassembled and reassembled into a nanocrate.' EMD-72122 'other EM volume' PDB 'The same protein that was unassembled and reassembled into a nanocrate.' 9Q1B unspecified EMDB 'MS2 bacteriophage coat protein with waters modeled' EMD-72124 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 alex@nysbc.org Alex 'de Marco' ? 'principal investigator/group leader' 0000-0001-6238-5653 3 mgfinn@gatech.edu M.G. Finn ? 'principal investigator/group leader' 0000-0001-8247-3108 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zimanyi, C.M.' 1 0000-0002-6782-507X 'Bobe, D.' 2 0000-0002-7388-8907 'Jenkins, M.C.' 3 0000-0002-0583-3533 'Kopylov, M.' 4 0000-0003-0188-9799 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Overcoming air-water interface-induced artifacts in Cryo-EM with protein nanocrates' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jenkins, M.C.' 1 0000-0002-0583-3533 primary 'Bobe, D.' 2 0000-0002-7388-8907 primary 'Johnston, J.D.' 3 0000-0003-3060-7738 primary 'Cheung, J.' 4 0000-0002-1014-0707 primary 'Karasawa, A.' 5 0000-0003-4977-1474 primary 'Zimanyi, C.M.' 6 0000-0002-6782-507X primary 'Dermanci, O.' 7 ? primary 'Finn, M.G.' 8 0000-0001-8247-3108 primary 'de Marco, A.' 9 0000-0001-6238-5653 primary 'Kopylov, M.' 10 0000-0003-0188-9799 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid protein' 13738.464 3 ? ? ? ? 2 water nat water 18.015 265 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CP,Coat protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; _entity_poly.pdbx_seq_one_letter_code_can ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 ASN n 1 4 PHE n 1 5 THR n 1 6 GLN n 1 7 PHE n 1 8 VAL n 1 9 LEU n 1 10 VAL n 1 11 ASP n 1 12 ASN n 1 13 GLY n 1 14 GLY n 1 15 THR n 1 16 GLY n 1 17 ASP n 1 18 VAL n 1 19 THR n 1 20 VAL n 1 21 ALA n 1 22 PRO n 1 23 SER n 1 24 ASN n 1 25 PHE n 1 26 ALA n 1 27 ASN n 1 28 GLY n 1 29 VAL n 1 30 ALA n 1 31 GLU n 1 32 TRP n 1 33 ILE n 1 34 SER n 1 35 SER n 1 36 ASN n 1 37 SER n 1 38 ARG n 1 39 SER n 1 40 GLN n 1 41 ALA n 1 42 TYR n 1 43 LYS n 1 44 VAL n 1 45 THR n 1 46 CYS n 1 47 SER n 1 48 VAL n 1 49 ARG n 1 50 GLN n 1 51 SER n 1 52 SER n 1 53 ALA n 1 54 GLN n 1 55 ASN n 1 56 ARG n 1 57 LYS n 1 58 TYR n 1 59 THR n 1 60 ILE n 1 61 LYS n 1 62 VAL n 1 63 GLU n 1 64 VAL n 1 65 PRO n 1 66 LYS n 1 67 VAL n 1 68 ALA n 1 69 THR n 1 70 GLN n 1 71 THR n 1 72 VAL n 1 73 GLY n 1 74 GLY n 1 75 VAL n 1 76 GLU n 1 77 LEU n 1 78 PRO n 1 79 VAL n 1 80 ALA n 1 81 ALA n 1 82 TRP n 1 83 ARG n 1 84 SER n 1 85 TYR n 1 86 LEU n 1 87 ASN n 1 88 MET n 1 89 GLU n 1 90 LEU n 1 91 THR n 1 92 ILE n 1 93 PRO n 1 94 ILE n 1 95 PHE n 1 96 ALA n 1 97 THR n 1 98 ASN n 1 99 SER n 1 100 ASP n 1 101 CYS n 1 102 GLU n 1 103 LEU n 1 104 ILE n 1 105 VAL n 1 106 LYS n 1 107 ALA n 1 108 MET n 1 109 GLN n 1 110 GLY n 1 111 LEU n 1 112 LEU n 1 113 LYS n 1 114 ASP n 1 115 GLY n 1 116 ASN n 1 117 PRO n 1 118 ILE n 1 119 PRO n 1 120 SER n 1 121 ALA n 1 122 ILE n 1 123 ALA n 1 124 ALA n 1 125 ASN n 1 126 SER n 1 127 GLY n 1 128 ILE n 1 129 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 129 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia phage MS2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12022 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant Gold _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 TRP 82 82 82 TRP TRP A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 CYS 101 101 101 CYS CYS A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 MET 108 108 108 MET MET A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ASN 125 125 125 ASN ASN A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 TYR 129 129 129 TYR TYR A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 GLN 6 6 6 GLN GLN B . n B 1 7 PHE 7 7 7 PHE PHE B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 ASN 12 12 12 ASN ASN B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 THR 15 15 15 THR THR B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ASN 24 24 24 ASN ASN B . n B 1 25 PHE 25 25 25 PHE PHE B . n B 1 26 ALA 26 26 26 ALA ALA B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 VAL 29 29 29 VAL VAL B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 TRP 32 32 32 TRP TRP B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 SER 35 35 35 SER SER B . n B 1 36 ASN 36 36 36 ASN ASN B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 ARG 38 38 38 ARG ARG B . n B 1 39 SER 39 39 39 SER SER B . n B 1 40 GLN 40 40 40 GLN GLN B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 CYS 46 46 46 CYS CYS B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 ARG 49 49 49 ARG ARG B . n B 1 50 GLN 50 50 50 GLN GLN B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 GLN 54 54 54 GLN GLN B . n B 1 55 ASN 55 55 55 ASN ASN B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 TYR 58 58 58 TYR TYR B . n B 1 59 THR 59 59 59 THR THR B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 VAL 62 62 62 VAL VAL B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 PRO 65 65 65 PRO PRO B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 GLN 70 70 70 GLN GLN B . n B 1 71 THR 71 71 71 THR THR B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 GLY 74 74 74 GLY GLY B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 PRO 78 78 78 PRO PRO B . n B 1 79 VAL 79 79 79 VAL VAL B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 ALA 81 81 81 ALA ALA B . n B 1 82 TRP 82 82 82 TRP TRP B . n B 1 83 ARG 83 83 83 ARG ARG B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 TYR 85 85 85 TYR TYR B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 ASN 87 87 87 ASN ASN B . n B 1 88 MET 88 88 88 MET MET B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 ILE 92 92 92 ILE ILE B . n B 1 93 PRO 93 93 93 PRO PRO B . n B 1 94 ILE 94 94 94 ILE ILE B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 SER 99 99 99 SER SER B . n B 1 100 ASP 100 100 100 ASP ASP B . n B 1 101 CYS 101 101 101 CYS CYS B . n B 1 102 GLU 102 102 102 GLU GLU B . n B 1 103 LEU 103 103 103 LEU LEU B . n B 1 104 ILE 104 104 104 ILE ILE B . n B 1 105 VAL 105 105 105 VAL VAL B . n B 1 106 LYS 106 106 106 LYS LYS B . n B 1 107 ALA 107 107 107 ALA ALA B . n B 1 108 MET 108 108 108 MET MET B . n B 1 109 GLN 109 109 109 GLN GLN B . n B 1 110 GLY 110 110 110 GLY GLY B . n B 1 111 LEU 111 111 111 LEU LEU B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 LYS 113 113 113 LYS LYS B . n B 1 114 ASP 114 114 114 ASP ASP B . n B 1 115 GLY 115 115 115 GLY GLY B . n B 1 116 ASN 116 116 116 ASN ASN B . n B 1 117 PRO 117 117 117 PRO PRO B . n B 1 118 ILE 118 118 118 ILE ILE B . n B 1 119 PRO 119 119 119 PRO PRO B . n B 1 120 SER 120 120 120 SER SER B . n B 1 121 ALA 121 121 121 ALA ALA B . n B 1 122 ILE 122 122 122 ILE ILE B . n B 1 123 ALA 123 123 123 ALA ALA B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 ASN 125 125 125 ASN ASN B . n B 1 126 SER 126 126 126 SER SER B . n B 1 127 GLY 127 127 127 GLY GLY B . n B 1 128 ILE 128 128 128 ILE ILE B . n B 1 129 TYR 129 129 129 TYR TYR B . n C 1 1 ALA 1 1 1 ALA ALA C . n C 1 2 SER 2 2 2 SER SER C . n C 1 3 ASN 3 3 3 ASN ASN C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 THR 5 5 5 THR THR C . n C 1 6 GLN 6 6 6 GLN GLN C . n C 1 7 PHE 7 7 7 PHE PHE C . n C 1 8 VAL 8 8 8 VAL VAL C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 VAL 10 10 10 VAL VAL C . n C 1 11 ASP 11 11 11 ASP ASP C . n C 1 12 ASN 12 12 12 ASN ASN C . n C 1 13 GLY 13 13 13 GLY GLY C . n C 1 14 GLY 14 14 14 GLY GLY C . n C 1 15 THR 15 15 15 THR THR C . n C 1 16 GLY 16 16 16 GLY GLY C . n C 1 17 ASP 17 17 17 ASP ASP C . n C 1 18 VAL 18 18 18 VAL VAL C . n C 1 19 THR 19 19 19 THR THR C . n C 1 20 VAL 20 20 20 VAL VAL C . n C 1 21 ALA 21 21 21 ALA ALA C . n C 1 22 PRO 22 22 22 PRO PRO C . n C 1 23 SER 23 23 23 SER SER C . n C 1 24 ASN 24 24 24 ASN ASN C . n C 1 25 PHE 25 25 25 PHE PHE C . n C 1 26 ALA 26 26 26 ALA ALA C . n C 1 27 ASN 27 27 27 ASN ASN C . n C 1 28 GLY 28 28 28 GLY GLY C . n C 1 29 VAL 29 29 29 VAL VAL C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 GLU 31 31 31 GLU GLU C . n C 1 32 TRP 32 32 32 TRP TRP C . n C 1 33 ILE 33 33 33 ILE ILE C . n C 1 34 SER 34 34 34 SER SER C . n C 1 35 SER 35 35 35 SER SER C . n C 1 36 ASN 36 36 36 ASN ASN C . n C 1 37 SER 37 37 37 SER SER C . n C 1 38 ARG 38 38 38 ARG ARG C . n C 1 39 SER 39 39 39 SER SER C . n C 1 40 GLN 40 40 40 GLN GLN C . n C 1 41 ALA 41 41 41 ALA ALA C . n C 1 42 TYR 42 42 42 TYR TYR C . n C 1 43 LYS 43 43 43 LYS LYS C . n C 1 44 VAL 44 44 44 VAL VAL C . n C 1 45 THR 45 45 45 THR THR C . n C 1 46 CYS 46 46 46 CYS CYS C . n C 1 47 SER 47 47 47 SER SER C . n C 1 48 VAL 48 48 48 VAL VAL C . n C 1 49 ARG 49 49 49 ARG ARG C . n C 1 50 GLN 50 50 50 GLN GLN C . n C 1 51 SER 51 51 51 SER SER C . n C 1 52 SER 52 52 52 SER SER C . n C 1 53 ALA 53 53 53 ALA ALA C . n C 1 54 GLN 54 54 54 GLN GLN C . n C 1 55 ASN 55 55 55 ASN ASN C . n C 1 56 ARG 56 56 56 ARG ARG C . n C 1 57 LYS 57 57 57 LYS LYS C . n C 1 58 TYR 58 58 58 TYR TYR C . n C 1 59 THR 59 59 59 THR THR C . n C 1 60 ILE 60 60 60 ILE ILE C . n C 1 61 LYS 61 61 61 LYS LYS C . n C 1 62 VAL 62 62 62 VAL VAL C . n C 1 63 GLU 63 63 63 GLU GLU C . n C 1 64 VAL 64 64 64 VAL VAL C . n C 1 65 PRO 65 65 65 PRO PRO C . n C 1 66 LYS 66 66 66 LYS LYS C . n C 1 67 VAL 67 67 67 VAL VAL C . n C 1 68 ALA 68 68 68 ALA ALA C . n C 1 69 THR 69 69 69 THR THR C . n C 1 70 GLN 70 70 70 GLN GLN C . n C 1 71 THR 71 71 71 THR THR C . n C 1 72 VAL 72 72 72 VAL VAL C . n C 1 73 GLY 73 73 73 GLY GLY C . n C 1 74 GLY 74 74 74 GLY GLY C . n C 1 75 VAL 75 75 75 VAL VAL C . n C 1 76 GLU 76 76 76 GLU GLU C . n C 1 77 LEU 77 77 77 LEU LEU C . n C 1 78 PRO 78 78 78 PRO PRO C . n C 1 79 VAL 79 79 79 VAL VAL C . n C 1 80 ALA 80 80 80 ALA ALA C . n C 1 81 ALA 81 81 81 ALA ALA C . n C 1 82 TRP 82 82 82 TRP TRP C . n C 1 83 ARG 83 83 83 ARG ARG C . n C 1 84 SER 84 84 84 SER SER C . n C 1 85 TYR 85 85 85 TYR TYR C . n C 1 86 LEU 86 86 86 LEU LEU C . n C 1 87 ASN 87 87 87 ASN ASN C . n C 1 88 MET 88 88 88 MET MET C . n C 1 89 GLU 89 89 89 GLU GLU C . n C 1 90 LEU 90 90 90 LEU LEU C . n C 1 91 THR 91 91 91 THR THR C . n C 1 92 ILE 92 92 92 ILE ILE C . n C 1 93 PRO 93 93 93 PRO PRO C . n C 1 94 ILE 94 94 94 ILE ILE C . n C 1 95 PHE 95 95 95 PHE PHE C . n C 1 96 ALA 96 96 96 ALA ALA C . n C 1 97 THR 97 97 97 THR THR C . n C 1 98 ASN 98 98 98 ASN ASN C . n C 1 99 SER 99 99 99 SER SER C . n C 1 100 ASP 100 100 100 ASP ASP C . n C 1 101 CYS 101 101 101 CYS CYS C . n C 1 102 GLU 102 102 102 GLU GLU C . n C 1 103 LEU 103 103 103 LEU LEU C . n C 1 104 ILE 104 104 104 ILE ILE C . n C 1 105 VAL 105 105 105 VAL VAL C . n C 1 106 LYS 106 106 106 LYS LYS C . n C 1 107 ALA 107 107 107 ALA ALA C . n C 1 108 MET 108 108 108 MET MET C . n C 1 109 GLN 109 109 109 GLN GLN C . n C 1 110 GLY 110 110 110 GLY GLY C . n C 1 111 LEU 111 111 111 LEU LEU C . n C 1 112 LEU 112 112 112 LEU LEU C . n C 1 113 LYS 113 113 113 LYS LYS C . n C 1 114 ASP 114 114 114 ASP ASP C . n C 1 115 GLY 115 115 115 GLY GLY C . n C 1 116 ASN 116 116 116 ASN ASN C . n C 1 117 PRO 117 117 117 PRO PRO C . n C 1 118 ILE 118 118 118 ILE ILE C . n C 1 119 PRO 119 119 119 PRO PRO C . n C 1 120 SER 120 120 120 SER SER C . n C 1 121 ALA 121 121 121 ALA ALA C . n C 1 122 ILE 122 122 122 ILE ILE C . n C 1 123 ALA 123 123 123 ALA ALA C . n C 1 124 ALA 124 124 124 ALA ALA C . n C 1 125 ASN 125 125 125 ASN ASN C . n C 1 126 SER 126 126 126 SER SER C . n C 1 127 GLY 127 127 127 GLY GLY C . n C 1 128 ILE 128 128 128 ILE ILE C . n C 1 129 TYR 129 129 129 TYR TYR C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 201 55 HOH HOH A . D 2 HOH 2 202 95 HOH HOH A . D 2 HOH 3 203 210 HOH HOH A . D 2 HOH 4 204 140 HOH HOH A . D 2 HOH 5 205 165 HOH HOH A . D 2 HOH 6 206 128 HOH HOH A . D 2 HOH 7 207 81 HOH HOH A . D 2 HOH 8 208 78 HOH HOH A . D 2 HOH 9 209 96 HOH HOH A . D 2 HOH 10 210 144 HOH HOH A . D 2 HOH 11 211 28 HOH HOH A . D 2 HOH 12 212 204 HOH HOH A . D 2 HOH 13 213 32 HOH HOH A . D 2 HOH 14 214 51 HOH HOH A . D 2 HOH 15 215 75 HOH HOH A . D 2 HOH 16 216 18 HOH HOH A . D 2 HOH 17 217 54 HOH HOH A . D 2 HOH 18 218 137 HOH HOH A . D 2 HOH 19 219 186 HOH HOH A . D 2 HOH 20 220 52 HOH HOH A . D 2 HOH 21 221 233 HOH HOH A . D 2 HOH 22 222 171 HOH HOH A . D 2 HOH 23 223 116 HOH HOH A . D 2 HOH 24 224 100 HOH HOH A . D 2 HOH 25 225 205 HOH HOH A . D 2 HOH 26 226 106 HOH HOH A . D 2 HOH 27 227 79 HOH HOH A . D 2 HOH 28 228 168 HOH HOH A . D 2 HOH 29 229 193 HOH HOH A . D 2 HOH 30 230 147 HOH HOH A . D 2 HOH 31 231 15 HOH HOH A . D 2 HOH 32 232 143 HOH HOH A . D 2 HOH 33 233 1 HOH HOH A . D 2 HOH 34 234 180 HOH HOH A . D 2 HOH 35 235 112 HOH HOH A . D 2 HOH 36 236 206 HOH HOH A . D 2 HOH 37 237 127 HOH HOH A . D 2 HOH 38 238 82 HOH HOH A . D 2 HOH 39 239 122 HOH HOH A . D 2 HOH 40 240 22 HOH HOH A . D 2 HOH 41 241 195 HOH HOH A . D 2 HOH 42 242 260 HOH HOH A . D 2 HOH 43 243 141 HOH HOH A . D 2 HOH 44 244 40 HOH HOH A . D 2 HOH 45 245 146 HOH HOH A . D 2 HOH 46 246 107 HOH HOH A . D 2 HOH 47 247 259 HOH HOH A . D 2 HOH 48 248 105 HOH HOH A . D 2 HOH 49 249 220 HOH HOH A . D 2 HOH 50 250 76 HOH HOH A . D 2 HOH 51 251 111 HOH HOH A . D 2 HOH 52 252 209 HOH HOH A . D 2 HOH 53 253 136 HOH HOH A . D 2 HOH 54 254 29 HOH HOH A . D 2 HOH 55 255 16 HOH HOH A . D 2 HOH 56 256 145 HOH HOH A . D 2 HOH 57 257 172 HOH HOH A . D 2 HOH 58 258 135 HOH HOH A . D 2 HOH 59 259 163 HOH HOH A . D 2 HOH 60 260 249 HOH HOH A . D 2 HOH 61 261 10 HOH HOH A . D 2 HOH 62 262 149 HOH HOH A . D 2 HOH 63 263 119 HOH HOH A . D 2 HOH 64 264 44 HOH HOH A . D 2 HOH 65 265 169 HOH HOH A . D 2 HOH 66 266 53 HOH HOH A . D 2 HOH 67 267 99 HOH HOH A . D 2 HOH 68 268 235 HOH HOH A . D 2 HOH 69 269 170 HOH HOH A . D 2 HOH 70 270 30 HOH HOH A . D 2 HOH 71 271 80 HOH HOH A . D 2 HOH 72 272 227 HOH HOH A . D 2 HOH 73 273 242 HOH HOH A . D 2 HOH 74 274 219 HOH HOH A . D 2 HOH 75 275 113 HOH HOH A . D 2 HOH 76 276 117 HOH HOH A . D 2 HOH 77 277 241 HOH HOH A . D 2 HOH 78 278 229 HOH HOH A . D 2 HOH 79 279 251 HOH HOH A . D 2 HOH 80 280 252 HOH HOH A . D 2 HOH 81 281 207 HOH HOH A . D 2 HOH 82 282 250 HOH HOH A . D 2 HOH 83 283 213 HOH HOH A . D 2 HOH 84 284 257 HOH HOH A . D 2 HOH 85 285 164 HOH HOH A . D 2 HOH 86 286 208 HOH HOH A . E 2 HOH 1 201 224 HOH HOH B . E 2 HOH 2 202 152 HOH HOH B . E 2 HOH 3 203 181 HOH HOH B . E 2 HOH 4 204 86 HOH HOH B . E 2 HOH 5 205 63 HOH HOH B . E 2 HOH 6 206 17 HOH HOH B . E 2 HOH 7 207 155 HOH HOH B . E 2 HOH 8 208 196 HOH HOH B . E 2 HOH 9 209 62 HOH HOH B . E 2 HOH 10 210 232 HOH HOH B . E 2 HOH 11 211 158 HOH HOH B . E 2 HOH 12 212 37 HOH HOH B . E 2 HOH 13 213 174 HOH HOH B . E 2 HOH 14 214 187 HOH HOH B . E 2 HOH 15 215 114 HOH HOH B . E 2 HOH 16 216 162 HOH HOH B . E 2 HOH 17 217 262 HOH HOH B . E 2 HOH 18 218 84 HOH HOH B . E 2 HOH 19 219 177 HOH HOH B . E 2 HOH 20 220 45 HOH HOH B . E 2 HOH 21 221 188 HOH HOH B . E 2 HOH 22 222 68 HOH HOH B . E 2 HOH 23 223 14 HOH HOH B . E 2 HOH 24 224 166 HOH HOH B . E 2 HOH 25 225 69 HOH HOH B . E 2 HOH 26 226 139 HOH HOH B . E 2 HOH 27 227 74 HOH HOH B . E 2 HOH 28 228 87 HOH HOH B . E 2 HOH 29 229 173 HOH HOH B . E 2 HOH 30 230 192 HOH HOH B . E 2 HOH 31 231 120 HOH HOH B . E 2 HOH 32 232 50 HOH HOH B . E 2 HOH 33 233 31 HOH HOH B . E 2 HOH 34 234 93 HOH HOH B . E 2 HOH 35 235 41 HOH HOH B . E 2 HOH 36 236 228 HOH HOH B . E 2 HOH 37 237 198 HOH HOH B . E 2 HOH 38 238 83 HOH HOH B . E 2 HOH 39 239 9 HOH HOH B . E 2 HOH 40 240 85 HOH HOH B . E 2 HOH 41 241 8 HOH HOH B . E 2 HOH 42 242 176 HOH HOH B . E 2 HOH 43 243 197 HOH HOH B . E 2 HOH 44 244 61 HOH HOH B . E 2 HOH 45 245 160 HOH HOH B . E 2 HOH 46 246 102 HOH HOH B . E 2 HOH 47 247 36 HOH HOH B . E 2 HOH 48 248 103 HOH HOH B . E 2 HOH 49 249 23 HOH HOH B . E 2 HOH 50 250 156 HOH HOH B . E 2 HOH 51 251 240 HOH HOH B . E 2 HOH 52 252 98 HOH HOH B . E 2 HOH 53 253 65 HOH HOH B . E 2 HOH 54 254 70 HOH HOH B . E 2 HOH 55 255 77 HOH HOH B . E 2 HOH 56 256 91 HOH HOH B . E 2 HOH 57 257 97 HOH HOH B . E 2 HOH 58 258 157 HOH HOH B . E 2 HOH 59 259 35 HOH HOH B . E 2 HOH 60 260 243 HOH HOH B . E 2 HOH 61 261 237 HOH HOH B . E 2 HOH 62 262 154 HOH HOH B . E 2 HOH 63 263 239 HOH HOH B . E 2 HOH 64 264 104 HOH HOH B . E 2 HOH 65 265 184 HOH HOH B . E 2 HOH 66 266 25 HOH HOH B . E 2 HOH 67 267 115 HOH HOH B . E 2 HOH 68 268 3 HOH HOH B . E 2 HOH 69 269 89 HOH HOH B . E 2 HOH 70 270 231 HOH HOH B . E 2 HOH 71 271 212 HOH HOH B . E 2 HOH 72 272 178 HOH HOH B . E 2 HOH 73 273 67 HOH HOH B . E 2 HOH 74 274 256 HOH HOH B . E 2 HOH 75 275 153 HOH HOH B . E 2 HOH 76 276 12 HOH HOH B . E 2 HOH 77 277 253 HOH HOH B . E 2 HOH 78 278 211 HOH HOH B . E 2 HOH 79 279 110 HOH HOH B . E 2 HOH 80 280 138 HOH HOH B . E 2 HOH 81 281 26 HOH HOH B . E 2 HOH 82 282 64 HOH HOH B . E 2 HOH 83 283 92 HOH HOH B . E 2 HOH 84 284 73 HOH HOH B . E 2 HOH 85 285 244 HOH HOH B . E 2 HOH 86 286 38 HOH HOH B . E 2 HOH 87 287 66 HOH HOH B . E 2 HOH 88 288 121 HOH HOH B . E 2 HOH 89 289 159 HOH HOH B . E 2 HOH 90 290 20 HOH HOH B . E 2 HOH 91 291 238 HOH HOH B . E 2 HOH 92 292 2 HOH HOH B . E 2 HOH 93 293 246 HOH HOH B . E 2 HOH 94 294 161 HOH HOH B . E 2 HOH 95 295 230 HOH HOH B . E 2 HOH 96 296 247 HOH HOH B . E 2 HOH 97 297 101 HOH HOH B . E 2 HOH 98 298 94 HOH HOH B . E 2 HOH 99 299 248 HOH HOH B . E 2 HOH 100 300 190 HOH HOH B . E 2 HOH 101 301 71 HOH HOH B . E 2 HOH 102 302 108 HOH HOH B . E 2 HOH 103 303 90 HOH HOH B . E 2 HOH 104 304 245 HOH HOH B . E 2 HOH 105 305 109 HOH HOH B . E 2 HOH 106 306 88 HOH HOH B . E 2 HOH 107 307 118 HOH HOH B . E 2 HOH 108 308 175 HOH HOH B . E 2 HOH 109 309 236 HOH HOH B . E 2 HOH 110 310 226 HOH HOH B . E 2 HOH 111 311 214 HOH HOH B . E 2 HOH 112 312 225 HOH HOH B . F 2 HOH 1 201 47 HOH HOH C . F 2 HOH 2 202 183 HOH HOH C . F 2 HOH 3 203 58 HOH HOH C . F 2 HOH 4 204 33 HOH HOH C . F 2 HOH 5 205 203 HOH HOH C . F 2 HOH 6 206 182 HOH HOH C . F 2 HOH 7 207 123 HOH HOH C . F 2 HOH 8 208 34 HOH HOH C . F 2 HOH 9 209 223 HOH HOH C . F 2 HOH 10 210 148 HOH HOH C . F 2 HOH 11 211 56 HOH HOH C . F 2 HOH 12 212 6 HOH HOH C . F 2 HOH 13 213 124 HOH HOH C . F 2 HOH 14 214 46 HOH HOH C . F 2 HOH 15 215 129 HOH HOH C . F 2 HOH 16 216 13 HOH HOH C . F 2 HOH 17 217 185 HOH HOH C . F 2 HOH 18 218 57 HOH HOH C . F 2 HOH 19 219 42 HOH HOH C . F 2 HOH 20 220 264 HOH HOH C . F 2 HOH 21 221 5 HOH HOH C . F 2 HOH 22 222 39 HOH HOH C . F 2 HOH 23 223 126 HOH HOH C . F 2 HOH 24 224 27 HOH HOH C . F 2 HOH 25 225 49 HOH HOH C . F 2 HOH 26 226 4 HOH HOH C . F 2 HOH 27 227 43 HOH HOH C . F 2 HOH 28 228 60 HOH HOH C . F 2 HOH 29 229 19 HOH HOH C . F 2 HOH 30 230 24 HOH HOH C . F 2 HOH 31 231 255 HOH HOH C . F 2 HOH 32 232 151 HOH HOH C . F 2 HOH 33 233 134 HOH HOH C . F 2 HOH 34 234 125 HOH HOH C . F 2 HOH 35 235 194 HOH HOH C . F 2 HOH 36 236 48 HOH HOH C . F 2 HOH 37 237 59 HOH HOH C . F 2 HOH 38 238 167 HOH HOH C . F 2 HOH 39 239 142 HOH HOH C . F 2 HOH 40 240 132 HOH HOH C . F 2 HOH 41 241 131 HOH HOH C . F 2 HOH 42 242 191 HOH HOH C . F 2 HOH 43 243 133 HOH HOH C . F 2 HOH 44 244 215 HOH HOH C . F 2 HOH 45 245 11 HOH HOH C . F 2 HOH 46 246 130 HOH HOH C . F 2 HOH 47 247 7 HOH HOH C . F 2 HOH 48 248 217 HOH HOH C . F 2 HOH 49 249 179 HOH HOH C . F 2 HOH 50 250 199 HOH HOH C . F 2 HOH 51 251 21 HOH HOH C . F 2 HOH 52 252 263 HOH HOH C . F 2 HOH 53 253 266 HOH HOH C . F 2 HOH 54 254 150 HOH HOH C . F 2 HOH 55 255 72 HOH HOH C . F 2 HOH 56 256 189 HOH HOH C . F 2 HOH 57 257 234 HOH HOH C . F 2 HOH 58 258 265 HOH HOH C . F 2 HOH 59 259 261 HOH HOH C . F 2 HOH 60 260 216 HOH HOH C . F 2 HOH 61 261 258 HOH HOH C . F 2 HOH 62 262 200 HOH HOH C . F 2 HOH 63 263 254 HOH HOH C . F 2 HOH 64 264 222 HOH HOH C . F 2 HOH 65 265 221 HOH HOH C . F 2 HOH 66 266 202 HOH HOH C . F 2 HOH 67 267 201 HOH HOH C . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9Q1D _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9Q1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9Q1D _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 22.59 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9Q1D _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0029 ? 2946 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.5422 ? 4017 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.0469 ? 474 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.0048 ? 522 ? f_plane_restr ? ? ? 'ELECTRON MICROSCOPY' ? 9.3220 ? 1050 ? f_dihedral_angle_d ? ? ? # _struct.entry_id 9Q1D _struct.title 'MS2 bacteriophage coat protein with waters modeled' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9Q1D _struct_keywords.text 'Bacteriophage, VLP, MS2, VIRUS' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CAPSD_BPMS2 _struct_ref.pdbx_db_accession P03612 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; _struct_ref.pdbx_align_begin 2 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9Q1D A 1 ? 129 ? P03612 2 ? 130 ? 1 129 2 1 9Q1D B 1 ? 129 ? P03612 2 ? 130 ? 1 129 3 1 9Q1D C 1 ? 129 ? P03612 2 ? 130 ? 1 129 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 180-meric _pdbx_struct_assembly.oligomeric_count 180 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 ; _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? 0.0 0.0 1.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 3 'point symmetry operation' ? ? 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 1.0 0.0 0.0 0.0 4 'point symmetry operation' ? ? 0.0 0.0 -1.0 397.92 -1.0 0.0 0.0 397.92 0.0 1.0 0.0 0.0 5 'point symmetry operation' ? ? -1.0 0.0 0.0 397.92 0.0 -1.0 0.0 397.92 0.0 0.0 1.0 0.0 6 'point symmetry operation' ? ? 0.0 -1.0 0.0 397.92 0.0 0.0 -1.0 397.92 1.0 0.0 0.0 0.0 7 'point symmetry operation' ? ? 0.0 0.0 -1.0 397.92 1.0 0.0 0.0 0.0 0.0 -1.0 0.0 397.92 8 'point symmetry operation' ? ? 0.0 -1.0 0.0 397.92 0.0 0.0 1.0 0.0 -1.0 0.0 0.0 397.92 9 'point symmetry operation' ? ? -1.0 0.0 0.0 397.92 0.0 1.0 0.0 0.0 0.0 0.0 -1.0 397.92 10 'point symmetry operation' ? ? 0.0 0.0 1.0 0.0 -1.0 0.0 0.0 397.92 0.0 -1.0 0.0 397.92 11 'point symmetry operation' ? ? 1.0 0.0 0.0 0.0 0.0 -1.0 0.0 397.92 0.0 0.0 -1.0 397.92 12 'point symmetry operation' ? ? 0.0 1.0 0.0 0.0 0.0 0.0 -1.0 397.92 -1.0 0.0 0.0 397.92 13 'point symmetry operation' ? ? -0.80902 -0.5 0.30902 397.92 -0.5 0.30902 -0.80902 397.92 0.30902 -0.80902 -0.5 397.92 14 'point symmetry operation' ? ? 0.80902 -0.5 -0.30902 198.96 -0.5 -0.30902 -0.80902 520.88 0.30902 0.80902 -0.5 75.996 15 'point symmetry operation' ? ? 0.5 0.30902 -0.80902 198.96 -0.30902 -0.80902 -0.5 520.88 -0.80902 0.5 -0.30902 321.92 16 'point symmetry operation' ? ? -0.30902 -0.80902 -0.5 520.88 -0.80902 0.5 -0.30902 321.92 0.5 0.30902 -0.80902 198.96 17 'point symmetry operation' ? ? -0.80902 0.5 -0.30902 321.92 0.5 0.30902 -0.80902 198.96 -0.30902 -0.80902 -0.5 520.88 18 'point symmetry operation' ? ? -0.80902 -0.5 -0.30902 520.88 0.5 -0.30902 -0.80902 321.92 0.30902 -0.80902 0.5 198.96 19 'point symmetry operation' ? ? -0.30902 0.80902 -0.5 198.96 -0.80902 -0.5 -0.30902 520.88 -0.5 0.30902 0.80902 75.996 20 'point symmetry operation' ? ? 0.5 -0.30902 -0.80902 321.92 -0.30902 0.80902 -0.5 198.96 0.80902 0.5 0.30902 -122.96 21 'point symmetry operation' ? ? -0.5 -0.30902 -0.80902 520.88 0.30902 0.80902 -0.5 75.996 0.80902 -0.5 -0.30902 198.96 22 'point symmetry operation' ? ? -0.5 0.30902 -0.80902 397.92 0.30902 -0.80902 -0.5 397.92 -0.80902 -0.5 0.30902 397.92 23 'point symmetry operation' ? ? -0.30902 -0.80902 -0.5 520.88 0.80902 -0.5 0.30902 75.996 -0.5 -0.30902 0.80902 198.96 24 'point symmetry operation' ? ? -0.80902 0.5 -0.30902 321.92 -0.5 -0.30902 0.80902 198.96 0.30902 0.80902 0.5 -122.96 25 'point symmetry operation' ? ? 0.5 0.30902 -0.80902 198.96 0.30902 0.80902 0.5 -122.96 0.80902 -0.5 0.30902 75.996 26 'point symmetry operation' ? ? -0.5 0.30902 -0.80902 397.92 -0.30902 0.80902 0.5 2.8422e-14 0.80902 0.5 -0.30902 0.0 27 'point symmetry operation' ? ? -0.5 -0.30902 -0.80902 520.88 -0.30902 -0.80902 0.5 321.92 -0.80902 0.5 0.30902 198.96 28 'point symmetry operation' ? ? -0.80902 0.5 0.30902 198.96 0.5 0.30902 0.80902 -122.96 0.30902 0.80902 -0.5 75.996 29 'point symmetry operation' ? ? 0.80902 0.5 -0.30902 0.0 0.5 -0.30902 0.80902 2.8422e-14 0.30902 -0.80902 -0.5 397.92 30 'point symmetry operation' ? ? -0.30902 0.80902 -0.5 198.96 0.80902 0.5 0.30902 -122.96 0.5 -0.30902 -0.80902 321.92 31 'point symmetry operation' ? ? 0.5 -0.30902 -0.80902 321.92 0.30902 -0.80902 0.5 198.96 -0.80902 -0.5 -0.30902 520.88 32 'point symmetry operation' ? ? -0.80902 -0.5 -0.30902 520.88 -0.5 0.30902 0.80902 75.996 -0.30902 0.80902 -0.5 198.96 33 'point symmetry operation' ? ? -0.30902 -0.80902 0.5 321.92 -0.80902 0.5 0.30902 198.96 -0.5 -0.30902 -0.80902 520.88 34 'point symmetry operation' ? ? -0.30902 0.80902 0.5 2.8422e-14 0.80902 0.5 -0.30902 0.0 -0.5 0.30902 -0.80902 397.92 35 'point symmetry operation' ? ? 0.30902 0.80902 -0.5 75.996 0.80902 -0.5 -0.30902 198.96 -0.5 -0.30902 -0.80902 520.88 36 'point symmetry operation' ? ? 0.30902 -0.80902 -0.5 397.92 -0.80902 -0.5 0.30902 397.92 -0.5 0.30902 -0.80902 397.92 37 'point symmetry operation' ? ? 0.80902 0.5 -0.30902 0.0 -0.5 0.30902 -0.80902 397.92 -0.30902 0.80902 0.5 2.8422e-14 38 'point symmetry operation' ? ? -0.80902 0.5 0.30902 198.96 -0.5 -0.30902 -0.80902 520.88 -0.30902 -0.80902 0.5 321.92 39 'point symmetry operation' ? ? -0.5 -0.30902 0.80902 198.96 -0.30902 -0.80902 -0.5 520.88 0.80902 -0.5 0.30902 75.996 40 'point symmetry operation' ? ? 0.30902 0.80902 0.5 -122.96 -0.80902 0.5 -0.30902 321.92 -0.5 -0.30902 0.80902 198.96 41 'point symmetry operation' ? ? 0.80902 -0.5 0.30902 75.996 0.5 0.30902 -0.80902 198.96 0.30902 0.80902 0.5 -122.96 42 'point symmetry operation' ? ? 0.80902 0.5 0.30902 -122.96 0.5 -0.30902 -0.80902 321.92 -0.30902 0.80902 -0.5 198.96 43 'point symmetry operation' ? ? 0.30902 -0.80902 0.5 198.96 -0.80902 -0.5 -0.30902 520.88 0.5 -0.30902 -0.80902 321.92 44 'point symmetry operation' ? ? -0.5 0.30902 0.80902 75.996 -0.30902 0.80902 -0.5 198.96 -0.80902 -0.5 -0.30902 520.88 45 'point symmetry operation' ? ? 0.5 0.30902 0.80902 -122.96 0.30902 0.80902 -0.5 75.996 -0.80902 0.5 0.30902 198.96 46 'point symmetry operation' ? ? 0.5 -0.30902 0.80902 2.8422e-14 0.30902 -0.80902 -0.5 397.92 0.80902 0.5 -0.30902 0.0 47 'point symmetry operation' ? ? 0.30902 0.80902 0.5 -122.96 0.80902 -0.5 0.30902 75.996 0.5 0.30902 -0.80902 198.96 48 'point symmetry operation' ? ? 0.80902 -0.5 0.30902 75.996 -0.5 -0.30902 0.80902 198.96 -0.30902 -0.80902 -0.5 520.88 49 'point symmetry operation' ? ? -0.5 -0.30902 0.80902 198.96 0.30902 0.80902 0.5 -122.96 -0.80902 0.5 -0.30902 321.92 50 'point symmetry operation' ? ? 0.5 -0.30902 0.80902 2.8422e-14 -0.30902 0.80902 0.5 2.8422e-14 -0.80902 -0.5 0.30902 397.92 51 'point symmetry operation' ? ? 0.5 0.30902 0.80902 -122.96 -0.30902 -0.80902 0.5 321.92 0.80902 -0.5 -0.30902 198.96 52 'point symmetry operation' ? ? 0.80902 -0.5 -0.30902 198.96 0.5 0.30902 0.80902 -122.96 -0.30902 -0.80902 0.5 321.92 53 'point symmetry operation' ? ? -0.80902 -0.5 0.30902 397.92 0.5 -0.30902 0.80902 2.8422e-14 -0.30902 0.80902 0.5 2.8422e-14 54 'point symmetry operation' ? ? 0.30902 -0.80902 0.5 198.96 0.80902 0.5 0.30902 -122.96 -0.5 0.30902 0.80902 75.996 55 'point symmetry operation' ? ? -0.5 0.30902 0.80902 75.996 0.30902 -0.80902 0.5 198.96 0.80902 0.5 0.30902 -122.96 56 'point symmetry operation' ? ? 0.80902 0.5 0.30902 -122.96 -0.5 0.30902 0.80902 75.996 0.30902 -0.80902 0.5 198.96 57 'point symmetry operation' ? ? 0.30902 0.80902 -0.5 75.996 -0.80902 0.5 0.30902 198.96 0.5 0.30902 0.80902 -122.96 58 'point symmetry operation' ? ? 0.30902 -0.80902 -0.5 397.92 0.80902 0.5 -0.30902 0.0 0.5 -0.30902 0.80902 2.8422e-14 59 'point symmetry operation' ? ? -0.30902 -0.80902 0.5 321.92 0.80902 -0.5 -0.30902 198.96 0.5 0.30902 0.80902 -122.96 60 'point symmetry operation' ? ? -0.30902 0.80902 0.5 2.8422e-14 -0.80902 -0.5 0.30902 397.92 0.5 -0.30902 0.80902 2.8422e-14 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 25 ? VAL A 29 ? PHE A 25 VAL A 29 5 ? 5 HELX_P HELX_P2 AA2 THR A 97 ? LEU A 112 ? THR A 97 LEU A 112 1 ? 16 HELX_P HELX_P3 AA3 ASN A 116 ? ALA A 124 ? ASN A 116 ALA A 124 1 ? 9 HELX_P HELX_P4 AA4 PHE B 25 ? VAL B 29 ? PHE B 25 VAL B 29 5 ? 5 HELX_P HELX_P5 AA5 PRO B 78 ? ALA B 81 ? PRO B 78 ALA B 81 5 ? 4 HELX_P HELX_P6 AA6 THR B 97 ? LEU B 112 ? THR B 97 LEU B 112 1 ? 16 HELX_P HELX_P7 AA7 ASN B 116 ? ALA B 124 ? ASN B 116 ALA B 124 1 ? 9 HELX_P HELX_P8 AA8 PHE C 25 ? VAL C 29 ? PHE C 25 VAL C 29 5 ? 5 HELX_P HELX_P9 AA9 SER C 37 ? ALA C 41 ? SER C 37 ALA C 41 5 ? 5 HELX_P HELX_P10 AB1 THR C 97 ? LEU C 112 ? THR C 97 LEU C 112 1 ? 16 HELX_P HELX_P11 AB2 ASN C 116 ? ALA C 124 ? ASN C 116 ALA C 124 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 12 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel AA1 9 10 ? anti-parallel AA1 10 11 ? anti-parallel AA1 11 12 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 7 ? VAL A 10 ? PHE A 7 VAL A 10 AA1 2 VAL A 18 ? ASN A 24 ? VAL A 18 ASN A 24 AA1 3 ALA A 30 ? SER A 34 ? ALA A 30 SER A 34 AA1 4 LYS A 43 ? SER A 52 ? LYS A 43 SER A 52 AA1 5 ASN A 55 ? VAL A 72 ? ASN A 55 VAL A 72 AA1 6 VAL A 75 ? PRO A 93 ? VAL A 75 PRO A 93 AA1 7 ARG B 83 ? PRO B 93 ? ARG B 83 PRO B 93 AA1 8 ASN B 55 ? PRO B 65 ? ASN B 55 PRO B 65 AA1 9 LYS B 43 ? SER B 52 ? LYS B 43 SER B 52 AA1 10 ALA B 30 ? ILE B 33 ? ALA B 30 ILE B 33 AA1 11 VAL B 18 ? ASN B 24 ? VAL B 18 ASN B 24 AA1 12 PHE B 7 ? VAL B 10 ? PHE B 7 VAL B 10 AA2 1 PHE C 7 ? VAL C 10 ? PHE C 7 VAL C 10 AA2 2 VAL C 18 ? ASN C 24 ? VAL C 18 ASN C 24 AA2 3 ALA C 30 ? SER C 34 ? ALA C 30 SER C 34 AA2 4 LYS C 43 ? GLN C 50 ? LYS C 43 GLN C 50 AA2 5 ASN C 55 ? VAL C 72 ? ASN C 55 VAL C 72 AA2 6 VAL C 75 ? PRO C 93 ? VAL C 75 PRO C 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 7 ? N PHE A 7 O VAL A 20 ? O VAL A 20 AA1 2 3 N SER A 23 ? N SER A 23 O GLU A 31 ? O GLU A 31 AA1 3 4 N TRP A 32 ? N TRP A 32 O VAL A 44 ? O VAL A 44 AA1 4 5 N SER A 47 ? N SER A 47 O THR A 59 ? O THR A 59 AA1 5 6 N ARG A 56 ? N ARG A 56 O ILE A 92 ? O ILE A 92 AA1 6 7 N TYR A 85 ? N TYR A 85 O THR B 91 ? O THR B 91 AA1 7 8 O ILE B 92 ? O ILE B 92 N ARG B 56 ? N ARG B 56 AA1 8 9 O THR B 59 ? O THR B 59 N SER B 47 ? N SER B 47 AA1 9 10 O VAL B 44 ? O VAL B 44 N TRP B 32 ? N TRP B 32 AA1 10 11 O GLU B 31 ? O GLU B 31 N SER B 23 ? N SER B 23 AA1 11 12 O VAL B 18 ? O VAL B 18 N VAL B 10 ? N VAL B 10 AA2 1 2 N PHE C 7 ? N PHE C 7 O VAL C 20 ? O VAL C 20 AA2 2 3 N ALA C 21 ? N ALA C 21 O ILE C 33 ? O ILE C 33 AA2 3 4 N TRP C 32 ? N TRP C 32 O VAL C 44 ? O VAL C 44 AA2 4 5 N SER C 47 ? N SER C 47 O THR C 59 ? O THR C 59 AA2 5 6 N ILE C 60 ? N ILE C 60 O MET C 88 ? O MET C 88 # _pdbx_entry_details.entry_id 9Q1D _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 36 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 65.01 _pdbx_validate_torsion.psi -154.16 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9Q1D _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 9Q1B _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 9Q1B _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9Q1D _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 1.75 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 106754 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '100 mM Tris-HCl [pH 8.5], 80 mM KCl, 10 mM MgCl2' _em_buffer.pH 8.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Escherichia phage MS2 capsid protein' _em_entity_assembly.details 'Purified after recombinant expression in E. coli.' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9Q1D _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 100 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9Q1D _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9Q1D _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9Q1D _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 ILE N N N N 140 ILE CA C N S 141 ILE C C N N 142 ILE O O N N 143 ILE CB C N S 144 ILE CG1 C N N 145 ILE CG2 C N N 146 ILE CD1 C N N 147 ILE OXT O N N 148 ILE H H N N 149 ILE H2 H N N 150 ILE HA H N N 151 ILE HB H N N 152 ILE HG12 H N N 153 ILE HG13 H N N 154 ILE HG21 H N N 155 ILE HG22 H N N 156 ILE HG23 H N N 157 ILE HD11 H N N 158 ILE HD12 H N N 159 ILE HD13 H N N 160 ILE HXT H N N 161 LEU N N N N 162 LEU CA C N S 163 LEU C C N N 164 LEU O O N N 165 LEU CB C N N 166 LEU CG C N N 167 LEU CD1 C N N 168 LEU CD2 C N N 169 LEU OXT O N N 170 LEU H H N N 171 LEU H2 H N N 172 LEU HA H N N 173 LEU HB2 H N N 174 LEU HB3 H N N 175 LEU HG H N N 176 LEU HD11 H N N 177 LEU HD12 H N N 178 LEU HD13 H N N 179 LEU HD21 H N N 180 LEU HD22 H N N 181 LEU HD23 H N N 182 LEU HXT H N N 183 LYS N N N N 184 LYS CA C N S 185 LYS C C N N 186 LYS O O N N 187 LYS CB C N N 188 LYS CG C N N 189 LYS CD C N N 190 LYS CE C N N 191 LYS NZ N N N 192 LYS OXT O N N 193 LYS H H N N 194 LYS H2 H N N 195 LYS HA H N N 196 LYS HB2 H N N 197 LYS HB3 H N N 198 LYS HG2 H N N 199 LYS HG3 H N N 200 LYS HD2 H N N 201 LYS HD3 H N N 202 LYS HE2 H N N 203 LYS HE3 H N N 204 LYS HZ1 H N N 205 LYS HZ2 H N N 206 LYS HZ3 H N N 207 LYS HXT H N N 208 MET N N N N 209 MET CA C N S 210 MET C C N N 211 MET O O N N 212 MET CB C N N 213 MET CG C N N 214 MET SD S N N 215 MET CE C N N 216 MET OXT O N N 217 MET H H N N 218 MET H2 H N N 219 MET HA H N N 220 MET HB2 H N N 221 MET HB3 H N N 222 MET HG2 H N N 223 MET HG3 H N N 224 MET HE1 H N N 225 MET HE2 H N N 226 MET HE3 H N N 227 MET HXT H N N 228 PHE N N N N 229 PHE CA C N S 230 PHE C C N N 231 PHE O O N N 232 PHE CB C N N 233 PHE CG C Y N 234 PHE CD1 C Y N 235 PHE CD2 C Y N 236 PHE CE1 C Y N 237 PHE CE2 C Y N 238 PHE CZ C Y N 239 PHE OXT O N N 240 PHE H H N N 241 PHE H2 H N N 242 PHE HA H N N 243 PHE HB2 H N N 244 PHE HB3 H N N 245 PHE HD1 H N N 246 PHE HD2 H N N 247 PHE HE1 H N N 248 PHE HE2 H N N 249 PHE HZ H N N 250 PHE HXT H N N 251 PRO N N N N 252 PRO CA C N S 253 PRO C C N N 254 PRO O O N N 255 PRO CB C N N 256 PRO CG C N N 257 PRO CD C N N 258 PRO OXT O N N 259 PRO H H N N 260 PRO HA H N N 261 PRO HB2 H N N 262 PRO HB3 H N N 263 PRO HG2 H N N 264 PRO HG3 H N N 265 PRO HD2 H N N 266 PRO HD3 H N N 267 PRO HXT H N N 268 SER N N N N 269 SER CA C N S 270 SER C C N N 271 SER O O N N 272 SER CB C N N 273 SER OG O N N 274 SER OXT O N N 275 SER H H N N 276 SER H2 H N N 277 SER HA H N N 278 SER HB2 H N N 279 SER HB3 H N N 280 SER HG H N N 281 SER HXT H N N 282 THR N N N N 283 THR CA C N S 284 THR C C N N 285 THR O O N N 286 THR CB C N R 287 THR OG1 O N N 288 THR CG2 C N N 289 THR OXT O N N 290 THR H H N N 291 THR H2 H N N 292 THR HA H N N 293 THR HB H N N 294 THR HG1 H N N 295 THR HG21 H N N 296 THR HG22 H N N 297 THR HG23 H N N 298 THR HXT H N N 299 TRP N N N N 300 TRP CA C N S 301 TRP C C N N 302 TRP O O N N 303 TRP CB C N N 304 TRP CG C Y N 305 TRP CD1 C Y N 306 TRP CD2 C Y N 307 TRP NE1 N Y N 308 TRP CE2 C Y N 309 TRP CE3 C Y N 310 TRP CZ2 C Y N 311 TRP CZ3 C Y N 312 TRP CH2 C Y N 313 TRP OXT O N N 314 TRP H H N N 315 TRP H2 H N N 316 TRP HA H N N 317 TRP HB2 H N N 318 TRP HB3 H N N 319 TRP HD1 H N N 320 TRP HE1 H N N 321 TRP HE3 H N N 322 TRP HZ2 H N N 323 TRP HZ3 H N N 324 TRP HH2 H N N 325 TRP HXT H N N 326 TYR N N N N 327 TYR CA C N S 328 TYR C C N N 329 TYR O O N N 330 TYR CB C N N 331 TYR CG C Y N 332 TYR CD1 C Y N 333 TYR CD2 C Y N 334 TYR CE1 C Y N 335 TYR CE2 C Y N 336 TYR CZ C Y N 337 TYR OH O N N 338 TYR OXT O N N 339 TYR H H N N 340 TYR H2 H N N 341 TYR HA H N N 342 TYR HB2 H N N 343 TYR HB3 H N N 344 TYR HD1 H N N 345 TYR HD2 H N N 346 TYR HE1 H N N 347 TYR HE2 H N N 348 TYR HH H N N 349 TYR HXT H N N 350 VAL N N N N 351 VAL CA C N S 352 VAL C C N N 353 VAL O O N N 354 VAL CB C N N 355 VAL CG1 C N N 356 VAL CG2 C N N 357 VAL OXT O N N 358 VAL H H N N 359 VAL H2 H N N 360 VAL HA H N N 361 VAL HB H N N 362 VAL HG11 H N N 363 VAL HG12 H N N 364 VAL HG13 H N N 365 VAL HG21 H N N 366 VAL HG22 H N N 367 VAL HG23 H N N 368 VAL HXT H N N 369 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 MET N CA sing N N 197 MET N H sing N N 198 MET N H2 sing N N 199 MET CA C sing N N 200 MET CA CB sing N N 201 MET CA HA sing N N 202 MET C O doub N N 203 MET C OXT sing N N 204 MET CB CG sing N N 205 MET CB HB2 sing N N 206 MET CB HB3 sing N N 207 MET CG SD sing N N 208 MET CG HG2 sing N N 209 MET CG HG3 sing N N 210 MET SD CE sing N N 211 MET CE HE1 sing N N 212 MET CE HE2 sing N N 213 MET CE HE3 sing N N 214 MET OXT HXT sing N N 215 PHE N CA sing N N 216 PHE N H sing N N 217 PHE N H2 sing N N 218 PHE CA C sing N N 219 PHE CA CB sing N N 220 PHE CA HA sing N N 221 PHE C O doub N N 222 PHE C OXT sing N N 223 PHE CB CG sing N N 224 PHE CB HB2 sing N N 225 PHE CB HB3 sing N N 226 PHE CG CD1 doub Y N 227 PHE CG CD2 sing Y N 228 PHE CD1 CE1 sing Y N 229 PHE CD1 HD1 sing N N 230 PHE CD2 CE2 doub Y N 231 PHE CD2 HD2 sing N N 232 PHE CE1 CZ doub Y N 233 PHE CE1 HE1 sing N N 234 PHE CE2 CZ sing Y N 235 PHE CE2 HE2 sing N N 236 PHE CZ HZ sing N N 237 PHE OXT HXT sing N N 238 PRO N CA sing N N 239 PRO N CD sing N N 240 PRO N H sing N N 241 PRO CA C sing N N 242 PRO CA CB sing N N 243 PRO CA HA sing N N 244 PRO C O doub N N 245 PRO C OXT sing N N 246 PRO CB CG sing N N 247 PRO CB HB2 sing N N 248 PRO CB HB3 sing N N 249 PRO CG CD sing N N 250 PRO CG HG2 sing N N 251 PRO CG HG3 sing N N 252 PRO CD HD2 sing N N 253 PRO CD HD3 sing N N 254 PRO OXT HXT sing N N 255 SER N CA sing N N 256 SER N H sing N N 257 SER N H2 sing N N 258 SER CA C sing N N 259 SER CA CB sing N N 260 SER CA HA sing N N 261 SER C O doub N N 262 SER C OXT sing N N 263 SER CB OG sing N N 264 SER CB HB2 sing N N 265 SER CB HB3 sing N N 266 SER OG HG sing N N 267 SER OXT HXT sing N N 268 THR N CA sing N N 269 THR N H sing N N 270 THR N H2 sing N N 271 THR CA C sing N N 272 THR CA CB sing N N 273 THR CA HA sing N N 274 THR C O doub N N 275 THR C OXT sing N N 276 THR CB OG1 sing N N 277 THR CB CG2 sing N N 278 THR CB HB sing N N 279 THR OG1 HG1 sing N N 280 THR CG2 HG21 sing N N 281 THR CG2 HG22 sing N N 282 THR CG2 HG23 sing N N 283 THR OXT HXT sing N N 284 TRP N CA sing N N 285 TRP N H sing N N 286 TRP N H2 sing N N 287 TRP CA C sing N N 288 TRP CA CB sing N N 289 TRP CA HA sing N N 290 TRP C O doub N N 291 TRP C OXT sing N N 292 TRP CB CG sing N N 293 TRP CB HB2 sing N N 294 TRP CB HB3 sing N N 295 TRP CG CD1 doub Y N 296 TRP CG CD2 sing Y N 297 TRP CD1 NE1 sing Y N 298 TRP CD1 HD1 sing N N 299 TRP CD2 CE2 doub Y N 300 TRP CD2 CE3 sing Y N 301 TRP NE1 CE2 sing Y N 302 TRP NE1 HE1 sing N N 303 TRP CE2 CZ2 sing Y N 304 TRP CE3 CZ3 doub Y N 305 TRP CE3 HE3 sing N N 306 TRP CZ2 CH2 doub Y N 307 TRP CZ2 HZ2 sing N N 308 TRP CZ3 CH2 sing Y N 309 TRP CZ3 HZ3 sing N N 310 TRP CH2 HH2 sing N N 311 TRP OXT HXT sing N N 312 TYR N CA sing N N 313 TYR N H sing N N 314 TYR N H2 sing N N 315 TYR CA C sing N N 316 TYR CA CB sing N N 317 TYR CA HA sing N N 318 TYR C O doub N N 319 TYR C OXT sing N N 320 TYR CB CG sing N N 321 TYR CB HB2 sing N N 322 TYR CB HB3 sing N N 323 TYR CG CD1 doub Y N 324 TYR CG CD2 sing Y N 325 TYR CD1 CE1 sing Y N 326 TYR CD1 HD1 sing N N 327 TYR CD2 CE2 doub Y N 328 TYR CD2 HD2 sing N N 329 TYR CE1 CZ doub Y N 330 TYR CE1 HE1 sing N N 331 TYR CE2 CZ sing Y N 332 TYR CE2 HE2 sing N N 333 TYR CZ OH sing N N 334 TYR OH HH sing N N 335 TYR OXT HXT sing N N 336 VAL N CA sing N N 337 VAL N H sing N N 338 VAL N H2 sing N N 339 VAL CA C sing N N 340 VAL CA CB sing N N 341 VAL CA HA sing N N 342 VAL C O doub N N 343 VAL C OXT sing N N 344 VAL CB CG1 sing N N 345 VAL CB CG2 sing N N 346 VAL CB HB sing N N 347 VAL CG1 HG11 sing N N 348 VAL CG1 HG12 sing N N 349 VAL CG1 HG13 sing N N 350 VAL CG2 HG21 sing N N 351 VAL CG2 HG22 sing N N 352 VAL CG2 HG23 sing N N 353 VAL OXT HXT sing N N 354 # _em_admin.current_status REL _em_admin.deposition_date 2025-08-13 _em_admin.deposition_site RCSB _em_admin.entry_id 9Q1D _em_admin.last_update 2025-08-27 _em_admin.map_release_date 2025-08-27 _em_admin.title 'MS2 bacteriophage coat protein with waters modeled' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 12022 _em_entity_assembly_naturalsource.organism 'Escherichia phage MS2' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid pCDF _em_entity_assembly_recombinant.strain 'BL21(DE3) Gold' # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.2 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 52.36 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 4960 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 233748 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 Leginon ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF Chimera' ? ? OTHER ? 8 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? cryoSPARC ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? ? CLASSIFICATION ? 11 1 ? ? ? ? ? RECONSTRUCTION ? 12 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.21.1_5286 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Simons Foundation' 'United States' SF349247 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 'R01 AI148382' 2 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 'R01 CA247484' 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9Q1B _pdbx_initial_refinement_model.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9Q1D _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #