HEADER LIGASE 15-AUG-25 9Q2D TITLE CRYO-EM STRUCTURE OF TERNARY COMPLEX IKAROS-ZF2:CC-885:CRBN:DDB1 TITLE 2 (MOLECULAR GLUE DEGRADER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN IKAROS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IKAROS FAMILY ZINC FINGER PROTEIN 1,LYMPHOID TRANSCRIPTION COMPND 5 FACTOR LYF-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN CEREBLON; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA DAMAGE-BINDING PROTEIN 1; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: UNP RESIDUES 1-395,706-1140; COMPND 15 SYNONYM: DDB P127 SUBUNIT,DNA DAMAGE-BINDING PROTEIN A,DDBA,DAMAGE- COMPND 16 SPECIFIC DNA-BINDING PROTEIN 1,HBV X-ASSOCIATED PROTEIN 1,XAP-1,UV- COMPND 17 DAMAGED DNA-BINDING FACTOR,UV-DAMAGED DNA-BINDING PROTEIN 1,UV-DDB 1, COMPND 18 XPE-BINDING FACTOR,XPE-BF,XERODERMA PIGMENTOSUM GROUP E-COMPLEMENTING COMPND 19 PROTEIN,XPCE; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IKZF1, IK1, IKAROS, LYF1, ZNFN1A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CRBN, AD-006; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_CELL: SF9; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 GENE: DDB1, XAP1; SOURCE 23 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 24 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 26 EXPRESSION_SYSTEM_CELL: SF9; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS CEREBLON, DEGRADER, IKAROS, IKZF1, DDB1, MOLECULAR GLUE, LIGASE EXPDTA ELECTRON MICROSCOPY AUTHOR J.ZHU,B.E.PAGARIGAN,E.T.TRAN REVDAT 2 22-OCT-25 9Q2D 1 JRNL REVDAT 1 01-OCT-25 9Q2D 0 JRNL AUTH G.LUCHINI,S.LIU,H.L.POWERS,E.CHERNEY,J.ZHU,K.DANGA, JRNL AUTH 2 J.W.THOMPSON,L.SHI,B.PAGARIGAN,D.D.WEI,P.PARK,A.P.DEGNAN, JRNL AUTH 3 C.W.ZAPF,J.R.RIGGS,S.JOHNSON,T.CUMMINS JRNL TITL APPLICATION OF WEIGHTED INTERACTION-FINGERPRINTS FOR JRNL TITL 2 RATIONALIZING NEOSUBSTRATE POTENCY AND SELECTIVITY OF JRNL TITL 3 CEREBLON-BASED MOLECULAR GLUES. JRNL REF J.MED.CHEM. V. 68 20657 2025 JRNL REFN ISSN 0022-2623 JRNL PMID 40994183 JRNL DOI 10.1021/ACS.JMEDCHEM.5C01919 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, COOT, REMARK 3 CRYOSPARC, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 8D81 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.940 REMARK 3 NUMBER OF PARTICLES : 84299 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9Q2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000299045. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX IKAROS-ZF2:CC REMARK 245 -885:CRBN:DDB1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT TIME 4 SEC BLOT FORCE 4 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : TERNARY COMPLEX OF THREE REMARK 245 PROTEINS AND CC-885 REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 9754 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2910.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 110 REMARK 465 SER A 111 REMARK 465 LEU A 112 REMARK 465 PRO A 113 REMARK 465 ASN A 114 REMARK 465 GLY A 115 REMARK 465 LYS A 116 REMARK 465 LEU A 117 REMARK 465 LYS A 118 REMARK 465 CYS A 119 REMARK 465 ASP A 120 REMARK 465 ILE A 121 REMARK 465 CYS A 122 REMARK 465 GLY A 123 REMARK 465 ILE A 124 REMARK 465 ILE A 125 REMARK 465 CYS A 126 REMARK 465 ILE A 127 REMARK 465 GLY A 128 REMARK 465 PRO A 129 REMARK 465 ASN A 130 REMARK 465 VAL A 131 REMARK 465 LEU A 132 REMARK 465 MET A 133 REMARK 465 VAL A 134 REMARK 465 HIS A 135 REMARK 465 LYS A 136 REMARK 465 ARG A 137 REMARK 465 SER A 138 REMARK 465 HIS A 139 REMARK 465 THR A 140 REMARK 465 GLY A 141 REMARK 465 GLU A 142 REMARK 465 ARG A 143 REMARK 465 GLU A 170 REMARK 465 LYS A 171 REMARK 465 PRO A 172 REMARK 465 PHE A 173 REMARK 465 LYS A 174 REMARK 465 CYS A 175 REMARK 465 HIS A 176 REMARK 465 LEU A 177 REMARK 465 CYS A 178 REMARK 465 ASN A 179 REMARK 465 TYR A 180 REMARK 465 ALA A 181 REMARK 465 CYS A 182 REMARK 465 ARG A 183 REMARK 465 ARG A 184 REMARK 465 ARG A 185 REMARK 465 ASP A 186 REMARK 465 ALA A 187 REMARK 465 LEU A 188 REMARK 465 THR A 189 REMARK 465 GLY A 190 REMARK 465 HIS A 191 REMARK 465 LEU A 192 REMARK 465 ARG A 193 REMARK 465 THR A 194 REMARK 465 HIS A 195 REMARK 465 SER A 196 REMARK 465 MET B -24 REMARK 465 SER B -23 REMARK 465 TYR B -22 REMARK 465 TYR B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 GLY B 5 REMARK 465 ASP B 6 REMARK 465 GLN B 7 REMARK 465 GLN B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 HIS B 12 REMARK 465 ASN B 13 REMARK 465 MET B 14 REMARK 465 GLY B 15 REMARK 465 ASN B 16 REMARK 465 HIS B 17 REMARK 465 LEU B 18 REMARK 465 PRO B 19 REMARK 465 LEU B 20 REMARK 465 LEU B 21 REMARK 465 PRO B 22 REMARK 465 ALA B 23 REMARK 465 GLU B 24 REMARK 465 SER B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 30 REMARK 465 MET B 31 REMARK 465 GLU B 32 REMARK 465 VAL B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 465 GLN B 36 REMARK 465 ASP B 37 REMARK 465 SER B 38 REMARK 465 LYS B 39 REMARK 465 GLU B 40 REMARK 465 ALA B 41 REMARK 465 LYS B 42 REMARK 465 LYS B 43 REMARK 465 PRO B 44 REMARK 465 ASN B 45 REMARK 465 ILE B 46 REMARK 465 ILE B 47 REMARK 465 ASN B 48 REMARK 465 SER B 126 REMARK 465 ASN B 127 REMARK 465 VAL B 128 REMARK 465 GLN B 129 REMARK 465 GLU B 130 REMARK 465 ARG B 131 REMARK 465 VAL B 213 REMARK 465 SER B 214 REMARK 465 ARG B 215 REMARK 465 GLU B 216 REMARK 465 ASP B 217 REMARK 465 ASP B 428 REMARK 465 THR B 429 REMARK 465 GLU B 430 REMARK 465 ASP B 431 REMARK 465 GLU B 432 REMARK 465 ILE B 433 REMARK 465 SER B 434 REMARK 465 PRO B 435 REMARK 465 ASP B 436 REMARK 465 LYS B 437 REMARK 465 VAL B 438 REMARK 465 ILE B 439 REMARK 465 LEU B 440 REMARK 465 CYS B 441 REMARK 465 LEU B 442 REMARK 465 ILE C 698 REMARK 465 GLY C 699 REMARK 465 GLY C 700 REMARK 465 ASN C 701 REMARK 465 GLY C 702 REMARK 465 ASN C 703 REMARK 465 SER C 704 REMARK 465 GLY C 705 REMARK 465 GLU C 706 REMARK 465 ILE C 707 REMARK 465 GLN C 708 REMARK 465 PHE C 771 REMARK 465 SER C 772 REMARK 465 SER C 773 REMARK 465 SER C 774 REMARK 465 THR C 775 REMARK 465 ALA C 776 REMARK 465 PRO C 777 REMARK 465 HIS C 778 REMARK 465 GLU C 779 REMARK 465 THR C 780 REMARK 465 SER C 781 REMARK 465 ASN C 1016 REMARK 465 LEU C 1017 REMARK 465 GLY C 1018 REMARK 465 GLU C 1019 REMARK 465 THR C 1020 REMARK 465 ASP C 1116 REMARK 465 GLY C 1117 REMARK 465 SER C 1118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 68 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 84 CG CD1 CD2 REMARK 470 LEU B 99 CG CD1 CD2 REMARK 470 LEU B 101 CG CD1 CD2 REMARK 470 VAL B 110 CG1 CG2 REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 ILE B 141 CG1 CG2 CD1 REMARK 470 VAL B 157 CG1 CG2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 ASN B 203 CG OD1 ND2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 GLN B 218 CG CD OE1 NE2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 GLU C 27 CG CD OE1 OE2 REMARK 470 ASP C 99 CG OD1 OD2 REMARK 470 ARG C 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 153 CG CD CE NZ REMARK 470 GLN C 186 CG CD OE1 NE2 REMARK 470 LYS C 204 CG CD CE NZ REMARK 470 LYS C 208 CG CD CE NZ REMARK 470 GLN C 209 CG CD OE1 NE2 REMARK 470 ILE C 220 CG1 CG2 CD1 REMARK 470 ILE C 230 CG1 CG2 CD1 REMARK 470 ILE C 232 CG1 CG2 CD1 REMARK 470 ILE C 237 CG1 CG2 CD1 REMARK 470 TYR C 271 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU C 273 CG CD1 CD2 REMARK 470 LEU C 283 CG CD1 CD2 REMARK 470 GLU C 288 CG CD OE1 OE2 REMARK 470 GLU C 289 CG CD OE1 OE2 REMARK 470 GLN C 290 CG CD OE1 NE2 REMARK 470 MET C 291 CG SD CE REMARK 470 ASP C 292 CG OD1 OD2 REMARK 470 ASP C 339 CG OD1 OD2 REMARK 470 GLU C 342 CG CD OE1 OE2 REMARK 470 ARG C 369 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 709 CG CD CE NZ REMARK 470 LYS C 823 CG CD CE NZ REMARK 470 GLU C 842 CG CD OE1 OE2 REMARK 470 LYS C 844 CG CD CE NZ REMARK 470 GLN C 845 CG CD OE1 NE2 REMARK 470 LYS C 867 CG CD CE NZ REMARK 470 SER C 981 OG REMARK 470 ARG C1102 CG CD NE CZ NH1 NH2 REMARK 470 ASN C1111 CG OD1 ND2 REMARK 470 MET C1120 CG SD CE REMARK 470 LYS C1121 CG CD CE NZ REMARK 470 GLU C1123 CG CD OE1 OE2 REMARK 470 LYS C1131 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 163 ZN ZN A 201 1.26 REMARK 500 OE1 GLU C 40 OH TYR C 42 1.97 REMARK 500 OD2 ASP B 117 OG1 THR B 119 2.05 REMARK 500 ND2 ASN C 392 O LEU C 1012 2.13 REMARK 500 OG SER C 256 OD2 ASP C 275 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 51 -4.78 -57.69 REMARK 500 ALA B 62 -175.41 62.91 REMARK 500 ASP B 76 -2.02 69.81 REMARK 500 GLN B 148 -2.01 70.38 REMARK 500 PHE B 232 33.39 -98.07 REMARK 500 GLN B 327 -1.76 77.98 REMARK 500 ILE B 393 -62.35 -101.04 REMARK 500 ASN C 36 -104.22 56.37 REMARK 500 VAL C 52 -56.28 -124.80 REMARK 500 TYR C 84 40.86 70.67 REMARK 500 TYR C 245 118.27 -160.44 REMARK 500 VAL C 264 -62.55 -109.52 REMARK 500 GLN C 290 -142.95 60.92 REMARK 500 LEU C 317 -64.87 -94.22 REMARK 500 ASP C 318 157.16 179.75 REMARK 500 ASN C 341 -169.82 -79.66 REMARK 500 GLN C 370 -6.83 72.94 REMARK 500 PHE C 382 -131.67 58.30 REMARK 500 PRO C 838 49.94 -79.45 REMARK 500 GLU C 839 -13.22 -143.15 REMARK 500 ASN C 885 -119.58 54.84 REMARK 500 ASN C 970 156.49 -48.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 LIG DICTIONARY 52 55 OTHER REMARK 600 LIG C1 C1 C 0 YNN 1 REMARK 600 LIG C10 C10 C 0 YNN 2 REMARK 600 LIG C11 C11 C 0 YNN 3 REMARK 600 LIG C12 C12 C 0 YNN 4 REMARK 600 LIG C13 C13 C 0 NNN 5 REMARK 600 LIG C14 C14 C 0 NNN 6 REMARK 600 LIG C15 C15 C 0 NNN 7 REMARK 600 LIG C16 C16 C 0 NNN 8 REMARK 600 LIG C17 C17 C 0 NNN 9 REMARK 600 LIG C18 C18 C 0 NNN 10 REMARK 600 LIG C19 C19 C 0 NNN 11 REMARK 600 LIG C2 C2 C 0 YNN 12 REMARK 600 LIG C20 C20 C 0 NNS 13 REMARK 600 LIG C21 C21 C 0 NNN 14 REMARK 600 LIG C22 C22 C 0 NNN 15 REMARK 600 LIG C3 C3 C 0 YNN 16 REMARK 600 LIG C4 C4 C 0 YNN 17 REMARK 600 LIG C5 C5 C 0 YNN 18 REMARK 600 LIG C6 C6 C 0 YNN 19 REMARK 600 LIG C7 C7 C 0 YNN 20 REMARK 600 LIG C8 C8 C 0 YNN 21 REMARK 600 LIG C9 C9 C 0 YNN 22 REMARK 600 LIG N1 N1 N 0 NNN 23 REMARK 600 LIG N2 N2 N 0 NNN 24 REMARK 600 LIG N3 N3 N 0 NNN 25 REMARK 600 LIG N4 N4 N 0 NNN 26 REMARK 600 LIG O1 O1 O 0 NNN 27 REMARK 600 LIG O2 O2 O 0 NNN 28 REMARK 600 LIG O3 O3 O 0 NNN 29 REMARK 600 LIG O4 O4 O 0 NNN 30 REMARK 600 LIG CL1 CL1 CL 0 NNN 31 REMARK 600 LIG H1 H1 H 0 NNN 32 REMARK 600 LIG H2 H2 H 0 NNN 33 REMARK 600 LIG H3 H3 H 0 NNN 34 REMARK 600 LIG H10 H10 H 0 NNN 35 REMARK 600 LIG H11 H11 H 0 NNN 36 REMARK 600 LIG H12 H12 H 0 NNN 37 REMARK 600 LIG H13 H13 H 0 NNN 38 REMARK 600 LIG H14 H14 H 0 NNN 39 REMARK 600 LIG H15 H15 H 0 NNN 40 REMARK 600 LIG H16 H16 H 0 NNN 41 REMARK 600 LIG H17 H17 H 0 NNN 42 REMARK 600 LIG H18 H18 H 0 NNN 43 REMARK 600 LIG H19 H19 H 0 NNN 44 REMARK 600 LIG H20 H20 H 0 NNN 45 REMARK 600 LIG H21 H21 H 0 NNN 46 REMARK 600 LIG H4 H4 H 0 NNN 47 REMARK 600 LIG H5 H5 H 0 NNN 48 REMARK 600 LIG H6 H6 H 0 NNN 49 REMARK 600 LIG H7 H7 H 0 NNN 50 REMARK 600 LIG H8 H8 H 0 NNN 51 REMARK 600 LIG H9 H9 H 0 NNN 52 REMARK 600 LIG C1 C2 SING YN 1 REMARK 600 LIG C1 C7 DOUB YN 2 REMARK 600 LIG C1 H1 SING NN 3 REMARK 600 LIG C10 C12 SING YN 4 REMARK 600 LIG C10 C21 SING NN 5 REMARK 600 LIG C10 C3 DOUB YN 6 REMARK 600 LIG C11 C4 DOUB YN 7 REMARK 600 LIG C11 C6 SING YN 8 REMARK 600 LIG C11 N3 SING NN 9 REMARK 600 LIG C12 C6 DOUB YN 10 REMARK 600 LIG C12 CL1 SING NN 11 REMARK 600 LIG C13 C7 SING NN 12 REMARK 600 LIG C13 N2 SING NN 13 REMARK 600 LIG C13 O1 DOUB NN 14 REMARK 600 LIG C14 C18 SING NN 15 REMARK 600 LIG C14 N1 SING NN 16 REMARK 600 LIG C14 O2 DOUB NN 17 REMARK 600 LIG C15 C20 SING NN 18 REMARK 600 LIG C15 N1 SING NN 19 REMARK 600 LIG C15 O3 DOUB NN 20 REMARK 600 LIG C16 N3 SING NN 21 REMARK 600 LIG C16 N4 SING NN 22 REMARK 600 LIG C16 O4 DOUB NN 23 REMARK 600 LIG C17 C8 SING NN 24 REMARK 600 LIG C17 N2 SING NN 25 REMARK 600 LIG C17 H7 SING NN 26 REMARK 600 LIG C17 H8 SING NN 27 REMARK 600 LIG C18 C19 SING NN 28 REMARK 600 LIG C18 H10 SING NN 29 REMARK 600 LIG C18 H9 SING NN 30 REMARK 600 LIG C19 C20 SING NN 31 REMARK 600 LIG C19 H11 SING NN 32 REMARK 600 LIG C19 H12 SING NN 33 REMARK 600 LIG C2 C9 DOUB YN 34 REMARK 600 LIG C2 H2 SING NN 35 REMARK 600 LIG C20 N2 SING NN 36 REMARK 600 LIG C20 H13 SING NN 37 REMARK 600 LIG C21 H14 SING NN 38 REMARK 600 LIG C21 H15 SING NN 39 REMARK 600 LIG C21 H16 SING NN 40 REMARK 600 LIG C22 C9 SING NN 41 REMARK 600 LIG C22 N4 SING NN 42 REMARK 600 LIG C22 H17 SING NN 43 REMARK 600 LIG C22 H18 SING NN 44 REMARK 600 LIG C3 C4 SING YN 45 REMARK 600 LIG C3 H3 SING NN 46 REMARK 600 LIG C4 H4 SING NN 47 REMARK 600 LIG C5 C8 DOUB YN 48 REMARK 600 LIG C5 C9 SING YN 49 REMARK 600 LIG C5 H5 SING NN 50 REMARK 600 LIG C6 H6 SING NN 51 REMARK 600 LIG C7 C8 SING YN 52 REMARK 600 LIG N1 H19 SING NN 53 REMARK 600 LIG N3 H20 SING NN 54 REMARK 600 LIG N4 H21 SING NN 55 REMARK 600 REMARK 600 ZN DICTIONARY 1 0 OTHER REMARK 600 ZN ZN ZN ZN 2 NNN 1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 147 SG REMARK 620 2 CYS A 150 N 90.1 REMARK 620 3 CYS A 150 SG 114.1 85.1 REMARK 620 4 HIS A 163 NE2 98.7 157.6 72.5 REMARK 620 5 HIS A 167 NE2 97.6 100.7 147.9 98.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 323 SG REMARK 620 2 CYS B 326 SG 110.7 REMARK 620 3 CYS B 391 SG 110.0 108.1 REMARK 620 4 CYS B 394 SG 112.1 107.9 108.0 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: MOE REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: MOE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9Q22 RELATED DB: PDB REMARK 900 RELATED ID: EMD-72160 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF TERNARY COMPLEX IKAROS-ZF2:CC-885:CRBN:DDB1 REMARK 900 (MOLECULAR GLUE DEGRADER) DBREF 9Q2D A 112 196 UNP Q13422 IKZF1_HUMAN 112 196 DBREF 9Q2D B 1 442 UNP Q96SW2 CRBN_HUMAN 1 442 DBREF 9Q2D C 1 699 UNP Q16531 DDB1_HUMAN 1 395 DBREF 9Q2D C 706 1140 UNP Q16531 DDB1_HUMAN 706 1140 SEQADV 9Q2D GLY A 110 UNP Q13422 EXPRESSION TAG SEQADV 9Q2D SER A 111 UNP Q13422 EXPRESSION TAG SEQADV 9Q2D MET B -24 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D SER B -23 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D TYR B -22 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D TYR B -21 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D HIS B -20 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D HIS B -19 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D HIS B -18 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D HIS B -17 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D HIS B -16 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D HIS B -15 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D ASP B -14 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D TYR B -13 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D ASP B -12 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D ILE B -11 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D PRO B -10 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D THR B -9 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D THR B -8 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D GLY B -7 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D LEU B -6 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D VAL B -5 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D PRO B -4 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D ARG B -3 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D GLY B -2 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D SER B -1 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D MET B 0 UNP Q96SW2 EXPRESSION TAG SEQADV 9Q2D GLY C 700 UNP Q16531 LINKER SEQADV 9Q2D ASN C 701 UNP Q16531 LINKER SEQADV 9Q2D GLY C 702 UNP Q16531 LINKER SEQADV 9Q2D ASN C 703 UNP Q16531 LINKER SEQADV 9Q2D SER C 704 UNP Q16531 LINKER SEQADV 9Q2D GLY C 705 UNP Q16531 LINKER SEQRES 1 A 87 GLY SER LEU PRO ASN GLY LYS LEU LYS CYS ASP ILE CYS SEQRES 2 A 87 GLY ILE ILE CYS ILE GLY PRO ASN VAL LEU MET VAL HIS SEQRES 3 A 87 LYS ARG SER HIS THR GLY GLU ARG PRO PHE GLN CYS ASN SEQRES 4 A 87 GLN CYS GLY ALA SER PHE THR GLN LYS GLY ASN LEU LEU SEQRES 5 A 87 ARG HIS ILE LYS LEU HIS SER GLY GLU LYS PRO PHE LYS SEQRES 6 A 87 CYS HIS LEU CYS ASN TYR ALA CYS ARG ARG ARG ASP ALA SEQRES 7 A 87 LEU THR GLY HIS LEU ARG THR HIS SER SEQRES 1 B 467 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 467 ILE PRO THR THR GLY LEU VAL PRO ARG GLY SER MET MET SEQRES 3 B 467 ALA GLY GLU GLY ASP GLN GLN ASP ALA ALA HIS ASN MET SEQRES 4 B 467 GLY ASN HIS LEU PRO LEU LEU PRO ALA GLU SER GLU GLU SEQRES 5 B 467 GLU ASP GLU MET GLU VAL GLU ASP GLN ASP SER LYS GLU SEQRES 6 B 467 ALA LYS LYS PRO ASN ILE ILE ASN PHE ASP THR SER LEU SEQRES 7 B 467 PRO THR SER HIS THR TYR LEU GLY ALA ASP MET GLU GLU SEQRES 8 B 467 PHE HIS GLY ARG THR LEU HIS ASP ASP ASP SER CYS GLN SEQRES 9 B 467 VAL ILE PRO VAL LEU PRO GLN VAL MET MET ILE LEU ILE SEQRES 10 B 467 PRO GLY GLN THR LEU PRO LEU GLN LEU PHE HIS PRO GLN SEQRES 11 B 467 GLU VAL SER MET VAL ARG ASN LEU ILE GLN LYS ASP ARG SEQRES 12 B 467 THR PHE ALA VAL LEU ALA TYR SER ASN VAL GLN GLU ARG SEQRES 13 B 467 GLU ALA GLN PHE GLY THR THR ALA GLU ILE TYR ALA TYR SEQRES 14 B 467 ARG GLU GLU GLN ASP PHE GLY ILE GLU ILE VAL LYS VAL SEQRES 15 B 467 LYS ALA ILE GLY ARG GLN ARG PHE LYS VAL LEU GLU LEU SEQRES 16 B 467 ARG THR GLN SER ASP GLY ILE GLN GLN ALA LYS VAL GLN SEQRES 17 B 467 ILE LEU PRO GLU CYS VAL LEU PRO SER THR MET SER ALA SEQRES 18 B 467 VAL GLN LEU GLU SER LEU ASN LYS CYS GLN ILE PHE PRO SEQRES 19 B 467 SER LYS PRO VAL SER ARG GLU ASP GLN CYS SER TYR LYS SEQRES 20 B 467 TRP TRP GLN LYS TYR GLN LYS ARG LYS PHE HIS CYS ALA SEQRES 21 B 467 ASN LEU THR SER TRP PRO ARG TRP LEU TYR SER LEU TYR SEQRES 22 B 467 ASP ALA GLU THR LEU MET ASP ARG ILE LYS LYS GLN LEU SEQRES 23 B 467 ARG GLU TRP ASP GLU ASN LEU LYS ASP ASP SER LEU PRO SEQRES 24 B 467 SER ASN PRO ILE ASP PHE SER TYR ARG VAL ALA ALA CYS SEQRES 25 B 467 LEU PRO ILE ASP ASP VAL LEU ARG ILE GLN LEU LEU LYS SEQRES 26 B 467 ILE GLY SER ALA ILE GLN ARG LEU ARG CYS GLU LEU ASP SEQRES 27 B 467 ILE MET ASN LYS CYS THR SER LEU CYS CYS LYS GLN CYS SEQRES 28 B 467 GLN GLU THR GLU ILE THR THR LYS ASN GLU ILE PHE SER SEQRES 29 B 467 LEU SER LEU CYS GLY PRO MET ALA ALA TYR VAL ASN PRO SEQRES 30 B 467 HIS GLY TYR VAL HIS GLU THR LEU THR VAL TYR LYS ALA SEQRES 31 B 467 CYS ASN LEU ASN LEU ILE GLY ARG PRO SER THR GLU HIS SEQRES 32 B 467 SER TRP PHE PRO GLY TYR ALA TRP THR VAL ALA GLN CYS SEQRES 33 B 467 LYS ILE CYS ALA SER HIS ILE GLY TRP LYS PHE THR ALA SEQRES 34 B 467 THR LYS LYS ASP MET SER PRO GLN LYS PHE TRP GLY LEU SEQRES 35 B 467 THR ARG SER ALA LEU LEU PRO THR ILE PRO ASP THR GLU SEQRES 36 B 467 ASP GLU ILE SER PRO ASP LYS VAL ILE LEU CYS LEU SEQRES 1 C 836 MET SER TYR ASN TYR VAL VAL THR ALA GLN LYS PRO THR SEQRES 2 C 836 ALA VAL ASN GLY CYS VAL THR GLY HIS PHE THR SER ALA SEQRES 3 C 836 GLU ASP LEU ASN LEU LEU ILE ALA LYS ASN THR ARG LEU SEQRES 4 C 836 GLU ILE TYR VAL VAL THR ALA GLU GLY LEU ARG PRO VAL SEQRES 5 C 836 LYS GLU VAL GLY MET TYR GLY LYS ILE ALA VAL MET GLU SEQRES 6 C 836 LEU PHE ARG PRO LYS GLY GLU SER LYS ASP LEU LEU PHE SEQRES 7 C 836 ILE LEU THR ALA LYS TYR ASN ALA CYS ILE LEU GLU TYR SEQRES 8 C 836 LYS GLN SER GLY GLU SER ILE ASP ILE ILE THR ARG ALA SEQRES 9 C 836 HIS GLY ASN VAL GLN ASP ARG ILE GLY ARG PRO SER GLU SEQRES 10 C 836 THR GLY ILE ILE GLY ILE ILE ASP PRO GLU CYS ARG MET SEQRES 11 C 836 ILE GLY LEU ARG LEU TYR ASP GLY LEU PHE LYS VAL ILE SEQRES 12 C 836 PRO LEU ASP ARG ASP ASN LYS GLU LEU LYS ALA PHE ASN SEQRES 13 C 836 ILE ARG LEU GLU GLU LEU HIS VAL ILE ASP VAL LYS PHE SEQRES 14 C 836 LEU TYR GLY CYS GLN ALA PRO THR ILE CYS PHE VAL TYR SEQRES 15 C 836 GLN ASP PRO GLN GLY ARG HIS VAL LYS THR TYR GLU VAL SEQRES 16 C 836 SER LEU ARG GLU LYS GLU PHE ASN LYS GLY PRO TRP LYS SEQRES 17 C 836 GLN GLU ASN VAL GLU ALA GLU ALA SER MET VAL ILE ALA SEQRES 18 C 836 VAL PRO GLU PRO PHE GLY GLY ALA ILE ILE ILE GLY GLN SEQRES 19 C 836 GLU SER ILE THR TYR HIS ASN GLY ASP LYS TYR LEU ALA SEQRES 20 C 836 ILE ALA PRO PRO ILE ILE LYS GLN SER THR ILE VAL CYS SEQRES 21 C 836 HIS ASN ARG VAL ASP PRO ASN GLY SER ARG TYR LEU LEU SEQRES 22 C 836 GLY ASP MET GLU GLY ARG LEU PHE MET LEU LEU LEU GLU SEQRES 23 C 836 LYS GLU GLU GLN MET ASP GLY THR VAL THR LEU LYS ASP SEQRES 24 C 836 LEU ARG VAL GLU LEU LEU GLY GLU THR SER ILE ALA GLU SEQRES 25 C 836 CYS LEU THR TYR LEU ASP ASN GLY VAL VAL PHE VAL GLY SEQRES 26 C 836 SER ARG LEU GLY ASP SER GLN LEU VAL LYS LEU ASN VAL SEQRES 27 C 836 ASP SER ASN GLU GLN GLY SER TYR VAL VAL ALA MET GLU SEQRES 28 C 836 THR PHE THR ASN LEU GLY PRO ILE VAL ASP MET CYS VAL SEQRES 29 C 836 VAL ASP LEU GLU ARG GLN GLY GLN GLY GLN LEU VAL THR SEQRES 30 C 836 CYS SER GLY ALA PHE LYS GLU GLY SER LEU ARG ILE ILE SEQRES 31 C 836 ARG ASN GLY ILE GLY GLY ASN GLY ASN SER GLY GLU ILE SEQRES 32 C 836 GLN LYS LEU HIS ILE ARG THR VAL PRO LEU TYR GLU SER SEQRES 33 C 836 PRO ARG LYS ILE CYS TYR GLN GLU VAL SER GLN CYS PHE SEQRES 34 C 836 GLY VAL LEU SER SER ARG ILE GLU VAL GLN ASP THR SER SEQRES 35 C 836 GLY GLY THR THR ALA LEU ARG PRO SER ALA SER THR GLN SEQRES 36 C 836 ALA LEU SER SER SER VAL SER SER SER LYS LEU PHE SER SEQRES 37 C 836 SER SER THR ALA PRO HIS GLU THR SER PHE GLY GLU GLU SEQRES 38 C 836 VAL GLU VAL HIS ASN LEU LEU ILE ILE ASP GLN HIS THR SEQRES 39 C 836 PHE GLU VAL LEU HIS ALA HIS GLN PHE LEU GLN ASN GLU SEQRES 40 C 836 TYR ALA LEU SER LEU VAL SER CYS LYS LEU GLY LYS ASP SEQRES 41 C 836 PRO ASN THR TYR PHE ILE VAL GLY THR ALA MET VAL TYR SEQRES 42 C 836 PRO GLU GLU ALA GLU PRO LYS GLN GLY ARG ILE VAL VAL SEQRES 43 C 836 PHE GLN TYR SER ASP GLY LYS LEU GLN THR VAL ALA GLU SEQRES 44 C 836 LYS GLU VAL LYS GLY ALA VAL TYR SER MET VAL GLU PHE SEQRES 45 C 836 ASN GLY LYS LEU LEU ALA SER ILE ASN SER THR VAL ARG SEQRES 46 C 836 LEU TYR GLU TRP THR THR GLU LYS GLU LEU ARG THR GLU SEQRES 47 C 836 CYS ASN HIS TYR ASN ASN ILE MET ALA LEU TYR LEU LYS SEQRES 48 C 836 THR LYS GLY ASP PHE ILE LEU VAL GLY ASP LEU MET ARG SEQRES 49 C 836 SER VAL LEU LEU LEU ALA TYR LYS PRO MET GLU GLY ASN SEQRES 50 C 836 PHE GLU GLU ILE ALA ARG ASP PHE ASN PRO ASN TRP MET SEQRES 51 C 836 SER ALA VAL GLU ILE LEU ASP ASP ASP ASN PHE LEU GLY SEQRES 52 C 836 ALA GLU ASN ALA PHE ASN LEU PHE VAL CYS GLN LYS ASP SEQRES 53 C 836 SER ALA ALA THR THR ASP GLU GLU ARG GLN HIS LEU GLN SEQRES 54 C 836 GLU VAL GLY LEU PHE HIS LEU GLY GLU PHE VAL ASN VAL SEQRES 55 C 836 PHE CYS HIS GLY SER LEU VAL MET GLN ASN LEU GLY GLU SEQRES 56 C 836 THR SER THR PRO THR GLN GLY SER VAL LEU PHE GLY THR SEQRES 57 C 836 VAL ASN GLY MET ILE GLY LEU VAL THR SER LEU SER GLU SEQRES 58 C 836 SER TRP TYR ASN LEU LEU LEU ASP MET GLN ASN ARG LEU SEQRES 59 C 836 ASN LYS VAL ILE LYS SER VAL GLY LYS ILE GLU HIS SER SEQRES 60 C 836 PHE TRP ARG SER PHE HIS THR GLU ARG LYS THR GLU PRO SEQRES 61 C 836 ALA THR GLY PHE ILE ASP GLY ASP LEU ILE GLU SER PHE SEQRES 62 C 836 LEU ASP ILE SER ARG PRO LYS MET GLN GLU VAL VAL ALA SEQRES 63 C 836 ASN LEU GLN TYR ASP ASP GLY SER GLY MET LYS ARG GLU SEQRES 64 C 836 ALA THR ALA ASP ASP LEU ILE LYS VAL VAL GLU GLU LEU SEQRES 65 C 836 THR ARG ILE HIS HET ZN A 201 1 HET ZN B 501 1 HET 85C B 502 52 HETNAM ZN ZINC ION HETNAM 85C 1-(3-CHLORO-4-METHYLPHENYL)-3-({2-[(3S)-2,6- HETNAM 2 85C DIOXOPIPERIDIN-3-YL]-1-OXO-2,3-DIHYDRO-1H-ISOINDOL-5- HETNAM 3 85C YL}METHYL)UREA FORMUL 4 ZN 2(ZN 2+) FORMUL 6 85C C22 H21 CL N4 O4 HELIX 1 AA1 GLN A 156 HIS A 167 1 12 HELIX 2 AA2 SER B 52 HIS B 57 1 6 HELIX 3 AA3 THR B 58 GLY B 61 5 4 HELIX 4 AA4 HIS B 103 LYS B 116 1 14 HELIX 5 AA5 LEU B 199 GLN B 206 5 8 HELIX 6 AA6 CYS B 219 PHE B 232 1 14 HELIX 7 AA7 HIS B 233 THR B 238 5 6 HELIX 8 AA8 PRO B 241 SER B 246 1 6 HELIX 9 AA9 ASP B 249 GLU B 263 1 15 HELIX 10 AB1 LEU B 268 LEU B 273 1 6 HELIX 11 AB2 ASN B 276 ALA B 286 1 11 HELIX 12 AB3 ASP B 291 ILE B 301 1 11 HELIX 13 AB4 SER B 303 CYS B 318 1 16 HELIX 14 AB5 ASN B 335 ILE B 337 5 3 HELIX 15 AB6 ILE C 252 SER C 256 5 5 HELIX 16 AB7 ALA C 381 GLU C 384 5 4 HELIX 17 AB8 THR C 985 GLN C 990 1 6 HELIX 18 AB9 SER C 1044 ASN C 1059 1 16 HELIX 19 AC1 GLU C 1069 SER C 1075 1 7 HELIX 20 AC2 GLY C 1091 SER C 1096 1 6 HELIX 21 AC3 PHE C 1097 ASP C 1099 5 3 HELIX 22 AC4 SER C 1101 VAL C 1109 1 9 HELIX 23 AC5 THR C 1125 ARG C 1138 1 14 SHEET 1 AA1 2 PHE A 145 GLN A 146 0 SHEET 2 AA1 2 SER A 153 PHE A 154 -1 O PHE A 154 N PHE A 145 SHEET 1 AA2 7 THR B 96 LEU B 101 0 SHEET 2 AA2 7 VAL B 155 THR B 172 -1 O VAL B 157 N LEU B 99 SHEET 3 AA2 7 GLN B 178 ILE B 184 -1 O GLN B 179 N ARG B 171 SHEET 4 AA2 7 CYS B 78 VAL B 83 -1 N GLN B 79 O VAL B 182 SHEET 5 AA2 7 THR B 119 LEU B 123 1 O ALA B 121 N PRO B 82 SHEET 6 AA2 7 PHE B 135 GLU B 146 -1 O ALA B 139 N PHE B 120 SHEET 7 AA2 7 VAL B 155 THR B 172 -1 O LYS B 156 N ARG B 145 SHEET 1 AA3 3 GLU B 330 THR B 333 0 SHEET 2 AA3 3 SER B 320 CYS B 323 -1 N LEU B 321 O THR B 332 SHEET 3 AA3 3 LEU B 422 THR B 425 -1 O LEU B 423 N CYS B 322 SHEET 1 AA4 6 MET B 346 VAL B 350 0 SHEET 2 AA4 6 VAL B 356 VAL B 362 -1 O HIS B 357 N TYR B 349 SHEET 3 AA4 6 LYS B 413 THR B 418 -1 O TRP B 415 N VAL B 362 SHEET 4 AA4 6 HIS B 397 THR B 403 -1 N TRP B 400 O GLY B 416 SHEET 5 AA4 6 THR B 387 CYS B 391 -1 N ALA B 389 O ILE B 398 SHEET 6 AA4 6 LEU B 368 ILE B 371 -1 N ASN B 369 O GLN B 390 SHEET 1 AA5 5 VAL C1004 HIS C1009 0 SHEET 2 AA5 5 VAL C1028 THR C1032 -1 O GLY C1031 N ASN C1005 SHEET 3 AA5 5 ILE C1037 SER C1042 -1 O GLY C1038 N PHE C1030 SHEET 4 AA5 5 ASN C 4 GLN C 10 -1 N VAL C 7 O LEU C1039 SHEET 5 AA5 5 PHE C1088 ASP C1090 1 O ILE C1089 N VAL C 6 SHEET 1 AA6 4 GLY C 17 GLY C 21 0 SHEET 2 AA6 4 ASN C 30 LYS C 35 -1 O LEU C 32 N VAL C 19 SHEET 3 AA6 4 ARG C 38 VAL C 44 -1 O TYR C 42 N LEU C 31 SHEET 4 AA6 4 LEU C 49 GLY C 56 -1 O VAL C 55 N LEU C 39 SHEET 1 AA7 4 ILE C 61 PHE C 67 0 SHEET 2 AA7 4 LEU C 76 THR C 81 -1 O LEU C 76 N PHE C 67 SHEET 3 AA7 4 ASN C 85 SER C 94 -1 O CYS C 87 N ILE C 79 SHEET 4 AA7 4 SER C 97 ASN C 107 -1 O SER C 97 N SER C 94 SHEET 1 AA8 4 ILE C 121 ILE C 124 0 SHEET 2 AA8 4 MET C 130 ARG C 134 -1 O ARG C 134 N ILE C 121 SHEET 3 AA8 4 LEU C 139 PRO C 144 -1 O LYS C 141 N LEU C 133 SHEET 4 AA8 4 PHE C 155 ARG C 158 -1 O PHE C 155 N VAL C 142 SHEET 1 AA9 4 HIS C 163 PHE C 169 0 SHEET 2 AA9 4 THR C 177 ASP C 184 -1 O CYS C 179 N LYS C 168 SHEET 3 AA9 4 GLY C 187 SER C 196 -1 O LYS C 191 N PHE C 180 SHEET 4 AA9 4 GLU C 201 LYS C 204 -1 O GLU C 201 N SER C 196 SHEET 1 AB1 4 HIS C 163 PHE C 169 0 SHEET 2 AB1 4 THR C 177 ASP C 184 -1 O CYS C 179 N LYS C 168 SHEET 3 AB1 4 GLY C 187 SER C 196 -1 O LYS C 191 N PHE C 180 SHEET 4 AB1 4 GLU C 210 ASN C 211 -1 O GLU C 210 N VAL C 190 SHEET 1 AB2 4 MET C 218 ALA C 221 0 SHEET 2 AB2 4 ALA C 229 ILE C 232 -1 O ILE C 232 N MET C 218 SHEET 3 AB2 4 ILE C 237 HIS C 240 -1 O THR C 238 N ILE C 231 SHEET 4 AB2 4 TYR C 245 ILE C 248 -1 O ILE C 248 N ILE C 237 SHEET 1 AB3 4 ILE C 258 ARG C 263 0 SHEET 2 AB3 4 ARG C 270 ASP C 275 -1 O GLY C 274 N VAL C 259 SHEET 3 AB3 4 ARG C 279 GLU C 288 -1 O PHE C 281 N LEU C 273 SHEET 4 AB3 4 THR C 296 GLU C 307 -1 O ASP C 299 N GLU C 286 SHEET 1 AB4 4 CYS C 313 ASP C 318 0 SHEET 2 AB4 4 VAL C 321 GLY C 325 -1 O VAL C 321 N LEU C 317 SHEET 3 AB4 4 GLN C 332 LEU C 336 -1 O VAL C 334 N VAL C 322 SHEET 4 AB4 4 VAL C 347 THR C 352 -1 O MET C 350 N LEU C 333 SHEET 1 AB5 4 ASP C 361 VAL C 365 0 SHEET 2 AB5 4 GLN C 374 SER C 379 -1 O VAL C 376 N CYS C 363 SHEET 3 AB5 4 SER C 386 ARG C 391 -1 O ILE C 390 N LEU C 375 SHEET 4 AB5 4 HIS C 711 PRO C 716 -1 O HIS C 711 N ARG C 391 SHEET 1 AB6 3 SER C 720 GLN C 727 0 SHEET 2 AB6 3 CYS C 732 GLN C 743 -1 O LEU C 736 N ARG C 722 SHEET 3 AB6 3 THR C 749 ALA C 751 -1 O THR C 750 N VAL C 742 SHEET 1 AB7 5 SER C 720 GLN C 727 0 SHEET 2 AB7 5 CYS C 732 GLN C 743 -1 O LEU C 736 N ARG C 722 SHEET 3 AB7 5 GLU C 785 ASP C 795 -1 O LEU C 792 N VAL C 735 SHEET 4 AB7 5 VAL C 801 GLN C 806 -1 O HIS C 803 N ILE C 793 SHEET 5 AB7 5 SER C 762 VAL C 765 1 N SER C 764 O GLN C 806 SHEET 1 AB8 4 GLU C 811 LEU C 821 0 SHEET 2 AB8 4 ASP C 824 MET C 835 -1 O ILE C 830 N VAL C 817 SHEET 3 AB8 4 GLY C 846 SER C 854 -1 O PHE C 851 N PHE C 829 SHEET 4 AB8 4 LYS C 857 VAL C 866 -1 O ALA C 862 N VAL C 850 SHEET 1 AB9 4 VAL C 874 PHE C 876 0 SHEET 2 AB9 4 LYS C 879 ILE C 884 -1 O LEU C 881 N VAL C 874 SHEET 3 AB9 4 THR C 887 TRP C 893 -1 O TYR C 891 N LEU C 880 SHEET 4 AB9 4 LEU C 899 TYR C 906 -1 O HIS C 905 N VAL C 888 SHEET 1 AC1 4 TYR C 913 LYS C 917 0 SHEET 2 AC1 4 PHE C 920 GLY C 924 -1 O LEU C 922 N LYS C 915 SHEET 3 AC1 4 SER C 929 LYS C 936 -1 O LEU C 931 N VAL C 923 SHEET 4 AC1 4 ASN C 941 PHE C 949 -1 O ALA C 946 N LEU C 932 SHEET 1 AC2 4 MET C 954 ILE C 959 0 SHEET 2 AC2 4 ASN C 964 GLU C 969 -1 O LEU C 966 N GLU C 958 SHEET 3 AC2 4 ASN C 973 GLN C 978 -1 O PHE C 975 N GLY C 967 SHEET 4 AC2 4 GLN C 993 HIS C 999 -1 O GLN C 993 N GLN C 978 SHEET 1 AC3 2 PHE C1076 HIS C1077 0 SHEET 2 AC3 2 THR C1082 GLU C1083 -1 O GLU C1083 N PHE C1076 SHEET 1 AC4 2 GLN C1113 TYR C1114 0 SHEET 2 AC4 2 ARG C1122 GLU C1123 -1 O ARG C1122 N TYR C1114 LINK SG CYS A 147 ZN ZN A 201 1555 1555 2.31 LINK N CYS A 150 ZN ZN A 201 1555 1555 2.67 LINK SG CYS A 150 ZN ZN A 201 1555 1555 2.31 LINK NE2 HIS A 163 ZN ZN A 201 1555 1555 2.03 LINK NE2 HIS A 167 ZN ZN A 201 1555 1555 2.05 LINK SG CYS B 323 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 326 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 391 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 394 ZN ZN B 501 1555 1555 2.33 CISPEP 1 SER B 410 PRO B 411 0 -0.84 CISPEP 2 GLU C 224 PRO C 225 0 2.13 CISPEP 3 GLY C 357 PRO C 358 0 -4.41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 399 GLY A 169 TER 6180 PRO B 427 TER 18417 HIS C1140 HETATM18418 ZN ZN A 201 129.158 123.916 189.642 1.00 96.16 ZN HETATM18419 ZN ZN B 501 136.473 135.562 185.181 1.00260.29 ZN HETATM18420 C1 85C B 502 129.493 115.874 188.878 1.00 83.86 C HETATM18421 C2 85C B 502 130.509 115.383 189.696 1.00 86.02 C HETATM18422 C3 85C B 502 131.762 115.162 189.134 1.00 73.46 C HETATM18423 C4 85C B 502 129.716 116.140 187.535 1.00 67.86 C HETATM18424 C5 85C B 502 130.980 115.911 186.993 1.00 57.80 C HETATM18425 C6 85C B 502 131.996 115.425 187.792 1.00 63.37 C HETATM18426 N1 85C B 502 132.808 115.718 185.651 1.00 63.91 N HETATM18427 N2 85C B 502 134.452 114.020 182.922 1.00 56.46 N HETATM18428 N3 85C B 502 129.962 113.695 191.420 1.00 94.53 N HETATM18429 O1 85C B 502 130.917 116.509 184.634 1.00 53.67 O HETATM18430 C7 85C B 502 133.247 115.267 186.976 1.00 63.76 C HETATM18431 C8 85C B 502 131.501 116.099 185.620 1.00 56.50 C HETATM18432 C9 85C B 502 133.669 115.759 184.480 1.00 61.76 C HETATM18433 C10 85C B 502 135.159 115.890 184.805 1.00 57.02 C HETATM18434 C11 85C B 502 135.978 115.832 183.519 1.00 53.94 C HETATM18435 C12 85C B 502 135.675 114.602 182.721 1.00 49.54 C HETATM18436 C13 85C B 502 133.388 114.566 183.589 1.00 64.99 C HETATM18437 C14 85C B 502 130.259 115.096 191.156 1.00 92.94 C HETATM18438 C15 85C B 502 128.827 113.113 190.982 1.00 92.21 C HETATM18439 O2 85C B 502 132.253 114.112 183.469 1.00 68.29 O HETATM18440 C17 85C B 502 126.584 111.290 190.216 1.00 93.31 C HETATM18441 C18 85C B 502 125.572 110.387 189.948 1.00 95.55 C HETATM18442 CL1 85C B 502 124.265 110.900 188.931 1.00 76.57 CL HETATM18443 C19 85C B 502 125.569 109.090 190.462 1.00 98.22 C HETATM18444 C22 85C B 502 124.467 108.104 190.171 1.00 95.28 C HETATM18445 C20 85C B 502 126.646 108.738 191.272 1.00 95.37 C HETATM18446 C21 85C B 502 127.671 109.624 191.555 1.00 89.66 C HETATM18447 C16 85C B 502 127.646 110.908 191.028 1.00 90.52 C HETATM18448 N4 85C B 502 128.708 111.793 191.334 1.00 89.54 N HETATM18449 O4 85C B 502 127.984 113.726 190.330 1.00 88.41 O HETATM18450 O3 85C B 502 136.470 114.118 181.920 1.00 39.37 O HETATM18451 H1 85C B 502 128.602 116.038 189.249 1.00 80.77 H HETATM18452 H2 85C B 502 132.486 114.817 189.696 1.00 74.48 H HETATM18453 H3 85C B 502 128.998 116.485 186.967 1.00 67.16 H HETATM18454 H4 85C B 502 134.336 113.212 182.588 1.00 56.13 H HETATM18455 H5 85C B 502 130.553 113.228 191.882 1.00 91.27 H HETATM18456 H6 85C B 502 133.965 115.849 187.299 1.00 63.78 H HETATM18457 H7 85C B 502 133.531 114.332 186.934 1.00 63.75 H HETATM18458 H8 85C B 502 133.400 116.540 183.954 1.00 58.97 H HETATM18459 H9 85C B 502 135.335 116.733 185.271 1.00 57.16 H HETATM18460 H10 85C B 502 135.444 115.167 185.399 1.00 57.35 H HETATM18461 H11 85C B 502 135.794 116.612 182.956 1.00 54.11 H HETATM18462 H12 85C B 502 136.932 115.833 183.738 1.00 54.05 H HETATM18463 H13 85C B 502 131.055 115.319 191.681 1.00 88.33 H HETATM18464 H14 85C B 502 129.537 115.668 191.486 1.00 87.37 H HETATM18465 H15 85C B 502 126.538 112.188 189.829 1.00 90.98 H HETATM18466 H16 85C B 502 123.598 108.480 190.420 1.00 93.20 H HETATM18467 H17 85C B 502 124.463 107.868 189.221 1.00 94.03 H HETATM18468 H18 85C B 502 124.584 107.275 190.679 1.00 94.41 H HETATM18469 H19 85C B 502 126.694 107.840 191.659 1.00 93.88 H HETATM18470 H20 85C B 502 128.399 109.313 192.131 1.00 90.25 H HETATM18471 H21 85C B 502 129.374 111.459 191.808 1.00 90.26 H CONECT 5718418 CONECT 9318418 CONECT 9818418 CONECT 29618418 CONECT 37318418 CONECT 454518419 CONECT 459418419 CONECT 559118419 CONECT 564218419 CONECT18418 57 93 98 296 CONECT18418 373 CONECT18419 4545 4594 5591 5642 CONECT18420184211842318451 CONECT18421184201842218437 CONECT18422184211842518452 CONECT18423184201842418453 CONECT18424184231842518431 CONECT18425184221842418430 CONECT18426184301843118432 CONECT18427184351843618454 CONECT18428184371843818455 CONECT1842918431 CONECT1843018425184261845618457 CONECT18431184241842618429 CONECT1843218426184331843618458 CONECT1843318432184341845918460 CONECT1843418433184351846118462 CONECT18435184271843418450 CONECT18436184271843218439 CONECT1843718421184281846318464 CONECT18438184281844818449 CONECT1843918436 CONECT18440184411844718465 CONECT18441184401844218443 CONECT1844218441 CONECT18443184411844418445 CONECT1844418443184661846718468 CONECT18445184431844618469 CONECT18446184451844718470 CONECT18447184401844618448 CONECT18448184381844718471 CONECT1844918438 CONECT1845018435 CONECT1845118420 CONECT1845218422 CONECT1845318423 CONECT1845418427 CONECT1845518428 CONECT1845618430 CONECT1845718430 CONECT1845818432 CONECT1845918433 CONECT1846018433 CONECT1846118434 CONECT1846218434 CONECT1846318437 CONECT1846418437 CONECT1846518440 CONECT1846618444 CONECT1846718444 CONECT1846818444 CONECT1846918445 CONECT1847018446 CONECT1847118448 MASTER 552 0 3 23 87 0 0 6 9352 3 64 108 END