HEADER TRANSFERASE 28-FEB-25 9QB5 TITLE AP2-ASSOCIATED PROTEIN KINASE 1 (AAK1) BOUND TO CKJB68 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP2-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADAPTOR-ASSOCIATED KINASE 1; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AAK1, KIAA1048; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE INHIBITOR MACROCYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.PREUSS,T.E.MENSING,T.HANKE,S.KNAPP,S.MATHEA REVDAT 2 22-OCT-25 9QB5 1 JRNL REVDAT 1 09-APR-25 9QB5 0 JRNL AUTH T.E.MENSING,C.G.KURZ,J.A.AMRHEIN,T.A.L.EHRET,F.PREUSS, JRNL AUTH 2 S.MATHEA,M.KARIM,D.H.N.TRAN,Z.KADLECOVA,T.A.TOLVANEN, JRNL AUTH 3 D.MARTINEZ-MOLINA,S.MULLER,S.EINAV,S.KNAPP,T.HANKE JRNL TITL DEVELOPMENT OF PYRAZOLO[1,5-A]PYRIMIDINE BASED MACROCYCLIC JRNL TITL 2 KINASE INHIBITORS TARGETING AAK1. JRNL REF EUR.J.MED.CHEM. V. 299 18076 2025 JRNL REFN ISSN 0223-5234 JRNL PMID 40882436 JRNL DOI 10.1016/J.EJMECH.2025.118076 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.630 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 50620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9900 - 5.2400 1.00 2982 124 0.1781 0.2076 REMARK 3 2 5.2400 - 4.1600 1.00 2761 153 0.1531 0.1451 REMARK 3 3 4.1600 - 3.6300 1.00 2740 134 0.1667 0.1989 REMARK 3 4 3.6300 - 3.3000 1.00 2687 152 0.2019 0.2095 REMARK 3 5 3.3000 - 3.0700 1.00 2696 143 0.2256 0.2449 REMARK 3 6 3.0700 - 2.8800 1.00 2682 126 0.2218 0.2605 REMARK 3 7 2.8800 - 2.7400 1.00 2642 159 0.2183 0.3297 REMARK 3 8 2.7400 - 2.6200 1.00 2667 131 0.2144 0.2591 REMARK 3 9 2.6200 - 2.5200 1.00 2618 155 0.2240 0.2682 REMARK 3 10 2.5200 - 2.4300 1.00 2639 153 0.2204 0.2405 REMARK 3 11 2.4300 - 2.3600 1.00 2661 121 0.2099 0.2664 REMARK 3 12 2.3600 - 2.2900 1.00 2638 108 0.2091 0.2305 REMARK 3 13 2.2900 - 2.2300 1.00 2644 159 0.1950 0.2275 REMARK 3 14 2.2300 - 2.1700 1.00 2601 135 0.2031 0.2474 REMARK 3 15 2.1700 - 2.1300 1.00 2610 130 0.2132 0.2533 REMARK 3 16 2.1300 - 2.0800 1.00 2618 149 0.2504 0.3117 REMARK 3 17 2.0800 - 2.0400 1.00 2624 148 0.3044 0.3396 REMARK 3 18 2.0400 - 2.0000 1.00 2582 148 0.3602 0.4084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.273 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.421 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4965 REMARK 3 ANGLE : 0.828 6751 REMARK 3 CHIRALITY : 0.055 761 REMARK 3 PLANARITY : 0.007 914 REMARK 3 DIHEDRAL : 6.234 739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5200 30.6626 18.6302 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.1875 REMARK 3 T33: 0.2409 T12: -0.0136 REMARK 3 T13: -0.0438 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 5.8909 L22: 0.7819 REMARK 3 L33: 1.2229 L12: 1.0094 REMARK 3 L13: 1.3832 L23: 0.5564 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: -0.0054 S13: -0.1646 REMARK 3 S21: 0.0639 S22: 0.0080 S23: 0.0883 REMARK 3 S31: 0.1723 S32: 0.0425 S33: -0.0153 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9868 34.4599 35.5723 REMARK 3 T TENSOR REMARK 3 T11: 0.2659 T22: 0.1984 REMARK 3 T33: 0.2202 T12: 0.0127 REMARK 3 T13: -0.0297 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.0886 L22: 1.9167 REMARK 3 L33: 3.8728 L12: 0.3092 REMARK 3 L13: 0.1896 L23: 0.3887 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -0.0508 S13: -0.0010 REMARK 3 S21: 0.0162 S22: 0.0717 S23: -0.0235 REMARK 3 S31: 0.2808 S32: -0.0014 S33: -0.0275 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1238 5.2761 -9.2074 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.5296 REMARK 3 T33: 0.4145 T12: -0.0306 REMARK 3 T13: 0.0068 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 2.4724 L22: 3.2854 REMARK 3 L33: 4.2695 L12: 0.4931 REMARK 3 L13: 0.0356 L23: -0.1827 REMARK 3 S TENSOR REMARK 3 S11: 0.1168 S12: 0.4794 S13: 0.3135 REMARK 3 S21: -0.1246 S22: 0.0709 S23: 0.6342 REMARK 3 S31: -0.0616 S32: -0.9577 S33: -0.1617 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0371 0.3901 -5.9464 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.3072 REMARK 3 T33: 0.2567 T12: -0.0327 REMARK 3 T13: 0.0271 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.2184 L22: 1.1422 REMARK 3 L33: 2.5855 L12: -0.0394 REMARK 3 L13: 2.1227 L23: 0.0772 REMARK 3 S TENSOR REMARK 3 S11: 0.2125 S12: 0.0641 S13: -0.0659 REMARK 3 S21: 0.0514 S22: 0.0363 S23: 0.0135 REMARK 3 S31: -0.0442 S32: 0.0838 S33: -0.2673 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6309 2.5564 2.4924 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.2480 REMARK 3 T33: 0.2522 T12: -0.0600 REMARK 3 T13: -0.0427 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 2.3382 L22: 1.4713 REMARK 3 L33: 3.4480 L12: 0.0477 REMARK 3 L13: 0.3449 L23: 0.2944 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.0064 S13: 0.0832 REMARK 3 S21: 0.0784 S22: -0.0786 S23: -0.1098 REMARK 3 S31: -0.3024 S32: 0.1595 S33: 0.0551 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292145956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66978 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE 30% PEG4000, PH REMARK 280 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.25500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.19300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.19300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.12750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.19300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.19300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.38250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.19300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.19300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.12750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.19300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.19300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 195.38250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 130.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 186 REMARK 465 ARG A 187 REMARK 465 ALA A 344 REMARK 465 LYS A 345 REMARK 465 MET B 28 REMARK 465 GLY B 29 REMARK 465 LEU B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 GLY B 33 REMARK 465 ALA B 343 REMARK 465 ALA B 344 REMARK 465 LYS B 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 MET A 69 CG SD CE REMARK 470 LYS A 70 CE NZ REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 143 CG CD OE1 NE2 REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 HIS A 185 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLN A 284 CG CD OE1 NE2 REMARK 470 LYS A 316 CE NZ REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 ASN A 326 CG OD1 ND2 REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 MET B 69 CG SD CE REMARK 470 LYS B 70 CD CE NZ REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 HIS B 82 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 GLN B 92 CG CD OE1 NE2 REMARK 470 ASP B 118 CG OD1 OD2 REMARK 470 ARG B 130 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 143 CG CD OE1 NE2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 201 CD CE NZ REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 ARG B 281 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 284 CD OE1 NE2 REMARK 470 GLU B 318 CG CD OE1 OE2 REMARK 470 LYS B 332 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 92 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 175 -3.07 75.53 REMARK 500 ASP A 176 47.25 -142.00 REMARK 500 ASP A 194 93.28 64.71 REMARK 500 THR A 240 -166.54 -121.23 REMARK 500 SER A 340 10.19 -68.42 REMARK 500 ASN B 79 19.69 -141.07 REMARK 500 ARG B 175 -3.42 75.65 REMARK 500 ASP B 176 45.15 -143.10 REMARK 500 ASP B 194 94.20 73.68 REMARK 500 THR B 240 -165.52 -126.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 9QB5 A 29 345 UNP Q2M2I8 AAK1_HUMAN 29 345 DBREF 9QB5 B 29 345 UNP Q2M2I8 AAK1_HUMAN 29 345 SEQADV 9QB5 MET A 28 UNP Q2M2I8 INITIATING METHIONINE SEQADV 9QB5 MET B 28 UNP Q2M2I8 INITIATING METHIONINE SEQRES 1 A 318 MET GLY LEU GLY SER GLY TYR ILE GLY ARG VAL PHE GLY SEQRES 2 A 318 ILE GLY ARG GLN GLN VAL THR VAL ASP GLU VAL LEU ALA SEQRES 3 A 318 GLU GLY GLY PHE ALA ILE VAL PHE LEU VAL ARG THR SER SEQRES 4 A 318 ASN GLY MET LYS CYS ALA LEU LYS ARG MET PHE VAL ASN SEQRES 5 A 318 ASN GLU HIS ASP LEU GLN VAL CYS LYS ARG GLU ILE GLN SEQRES 6 A 318 ILE MET ARG ASP LEU SER GLY HIS LYS ASN ILE VAL GLY SEQRES 7 A 318 TYR ILE ASP SER SER ILE ASN ASN VAL SER SER GLY ASP SEQRES 8 A 318 VAL TRP GLU VAL LEU ILE LEU MET ASP PHE CYS ARG GLY SEQRES 9 A 318 GLY GLN VAL VAL ASN LEU MET ASN GLN ARG LEU GLN THR SEQRES 10 A 318 GLY PHE THR GLU ASN GLU VAL LEU GLN ILE PHE CYS ASP SEQRES 11 A 318 THR CYS GLU ALA VAL ALA ARG LEU HIS GLN CYS LYS THR SEQRES 12 A 318 PRO ILE ILE HIS ARG ASP LEU LYS VAL GLU ASN ILE LEU SEQRES 13 A 318 LEU HIS ASP ARG GLY HIS TYR VAL LEU CYS ASP PHE GLY SEQRES 14 A 318 SER ALA THR ASN LYS PHE GLN ASN PRO GLN THR GLU GLY SEQRES 15 A 318 VAL ASN ALA VAL GLU ASP GLU ILE LYS LYS TYR THR THR SEQRES 16 A 318 LEU SER TYR ARG ALA PRO GLU MET VAL ASN LEU TYR SER SEQRES 17 A 318 GLY LYS ILE ILE THR THR LYS ALA ASP ILE TRP ALA LEU SEQRES 18 A 318 GLY CYS LEU LEU TYR LYS LEU CYS TYR PHE THR LEU PRO SEQRES 19 A 318 PHE GLY GLU SER GLN VAL ALA ILE CYS ASP GLY ASN PHE SEQRES 20 A 318 THR ILE PRO ASP ASN SER ARG TYR SER GLN ASP MET HIS SEQRES 21 A 318 CYS LEU ILE ARG TYR MET LEU GLU PRO ASP PRO ASP LYS SEQRES 22 A 318 ARG PRO ASP ILE TYR GLN VAL SER TYR PHE SER PHE LYS SEQRES 23 A 318 LEU LEU LYS LYS GLU CYS PRO ILE PRO ASN VAL GLN ASN SEQRES 24 A 318 SER PRO ILE PRO ALA LYS LEU PRO GLU PRO VAL LYS ALA SEQRES 25 A 318 SER GLU ALA ALA ALA LYS SEQRES 1 B 318 MET GLY LEU GLY SER GLY TYR ILE GLY ARG VAL PHE GLY SEQRES 2 B 318 ILE GLY ARG GLN GLN VAL THR VAL ASP GLU VAL LEU ALA SEQRES 3 B 318 GLU GLY GLY PHE ALA ILE VAL PHE LEU VAL ARG THR SER SEQRES 4 B 318 ASN GLY MET LYS CYS ALA LEU LYS ARG MET PHE VAL ASN SEQRES 5 B 318 ASN GLU HIS ASP LEU GLN VAL CYS LYS ARG GLU ILE GLN SEQRES 6 B 318 ILE MET ARG ASP LEU SER GLY HIS LYS ASN ILE VAL GLY SEQRES 7 B 318 TYR ILE ASP SER SER ILE ASN ASN VAL SER SER GLY ASP SEQRES 8 B 318 VAL TRP GLU VAL LEU ILE LEU MET ASP PHE CYS ARG GLY SEQRES 9 B 318 GLY GLN VAL VAL ASN LEU MET ASN GLN ARG LEU GLN THR SEQRES 10 B 318 GLY PHE THR GLU ASN GLU VAL LEU GLN ILE PHE CYS ASP SEQRES 11 B 318 THR CYS GLU ALA VAL ALA ARG LEU HIS GLN CYS LYS THR SEQRES 12 B 318 PRO ILE ILE HIS ARG ASP LEU LYS VAL GLU ASN ILE LEU SEQRES 13 B 318 LEU HIS ASP ARG GLY HIS TYR VAL LEU CYS ASP PHE GLY SEQRES 14 B 318 SER ALA THR ASN LYS PHE GLN ASN PRO GLN THR GLU GLY SEQRES 15 B 318 VAL ASN ALA VAL GLU ASP GLU ILE LYS LYS TYR THR THR SEQRES 16 B 318 LEU SER TYR ARG ALA PRO GLU MET VAL ASN LEU TYR SER SEQRES 17 B 318 GLY LYS ILE ILE THR THR LYS ALA ASP ILE TRP ALA LEU SEQRES 18 B 318 GLY CYS LEU LEU TYR LYS LEU CYS TYR PHE THR LEU PRO SEQRES 19 B 318 PHE GLY GLU SER GLN VAL ALA ILE CYS ASP GLY ASN PHE SEQRES 20 B 318 THR ILE PRO ASP ASN SER ARG TYR SER GLN ASP MET HIS SEQRES 21 B 318 CYS LEU ILE ARG TYR MET LEU GLU PRO ASP PRO ASP LYS SEQRES 22 B 318 ARG PRO ASP ILE TYR GLN VAL SER TYR PHE SER PHE LYS SEQRES 23 B 318 LEU LEU LYS LYS GLU CYS PRO ILE PRO ASN VAL GLN ASN SEQRES 24 B 318 SER PRO ILE PRO ALA LYS LEU PRO GLU PRO VAL LYS ALA SEQRES 25 B 318 SER GLU ALA ALA ALA LYS HET F7I A 401 32 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET F7I B 401 32 HET SO4 B 402 5 HET SO4 B 403 5 HETNAM F7I ~{N}-(PHENYLMETHYL)-7,10-DIOXA-13,17,18,21- HETNAM 2 F7I TETRAZATETRACYCLO[12.5.2.1^{2,6}.0^{17,20}]DOCOSA- HETNAM 3 F7I 1(20),2(22),3,5,14(21),15,18-HEPTAENE-5-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 3 F7I 2(C24 H23 N5 O3) FORMUL 4 SO4 5(O4 S 2-) FORMUL 10 HOH *149(H2 O) HELIX 1 AA1 ASN A 80 SER A 98 1 19 HELIX 2 AA2 VAL A 134 GLN A 140 1 7 HELIX 3 AA3 THR A 147 GLN A 167 1 21 HELIX 4 AA4 LYS A 178 GLU A 180 5 3 HELIX 5 AA5 ASN A 204 GLY A 209 1 6 HELIX 6 AA6 GLY A 209 THR A 221 1 13 HELIX 7 AA7 THR A 222 ARG A 226 5 5 HELIX 8 AA8 ALA A 227 ASN A 232 1 6 HELIX 9 AA9 THR A 241 PHE A 258 1 18 HELIX 10 AB1 SER A 265 GLY A 272 1 8 HELIX 11 AB2 SER A 283 LEU A 294 1 12 HELIX 12 AB3 ASP A 303 LYS A 316 1 14 HELIX 13 AB4 LYS A 338 ALA A 342 5 5 HELIX 14 AB5 ASN B 80 SER B 98 1 19 HELIX 15 AB6 VAL B 134 GLN B 140 1 7 HELIX 16 AB7 THR B 147 GLN B 167 1 21 HELIX 17 AB8 LYS B 178 GLU B 180 5 3 HELIX 18 AB9 ASN B 204 GLY B 209 1 6 HELIX 19 AC1 GLY B 209 THR B 221 1 13 HELIX 20 AC2 THR B 222 ARG B 226 5 5 HELIX 21 AC3 ALA B 227 ASN B 232 1 6 HELIX 22 AC4 THR B 241 PHE B 258 1 18 HELIX 23 AC5 SER B 265 GLY B 272 1 8 HELIX 24 AC6 SER B 283 LEU B 294 1 12 HELIX 25 AC7 ASP B 303 LYS B 316 1 14 SHEET 1 AA1 6 VAL A 38 ILE A 41 0 SHEET 2 AA1 6 GLN A 44 GLY A 55 -1 O GLN A 44 N ILE A 41 SHEET 3 AA1 6 ALA A 58 THR A 65 -1 O VAL A 60 N ALA A 53 SHEET 4 AA1 6 LYS A 70 VAL A 78 -1 O ARG A 75 N ILE A 59 SHEET 5 AA1 6 VAL A 119 ASP A 127 -1 O MET A 126 N ALA A 72 SHEET 6 AA1 6 TYR A 106 SER A 115 -1 N ASP A 108 O LEU A 125 SHEET 1 AA2 3 GLY A 132 GLN A 133 0 SHEET 2 AA2 3 ILE A 182 LEU A 184 -1 O LEU A 184 N GLY A 132 SHEET 3 AA2 3 TYR A 190 LEU A 192 -1 O VAL A 191 N LEU A 183 SHEET 1 AA3 6 VAL B 38 ILE B 41 0 SHEET 2 AA3 6 GLN B 44 GLY B 55 -1 O VAL B 46 N PHE B 39 SHEET 3 AA3 6 ALA B 58 THR B 65 -1 O LEU B 62 N ASP B 49 SHEET 4 AA3 6 LYS B 70 VAL B 78 -1 O CYS B 71 N VAL B 63 SHEET 5 AA3 6 VAL B 119 ASP B 127 -1 O VAL B 122 N MET B 76 SHEET 6 AA3 6 TYR B 106 SER B 115 -1 N ASN B 112 O GLU B 121 SHEET 1 AA4 3 GLY B 132 GLN B 133 0 SHEET 2 AA4 3 ILE B 182 LEU B 184 -1 O LEU B 184 N GLY B 132 SHEET 3 AA4 3 TYR B 190 LEU B 192 -1 O VAL B 191 N LEU B 183 SHEET 1 AA5 2 THR B 275 ILE B 276 0 SHEET 2 AA5 2 VAL B 337 LYS B 338 1 O VAL B 337 N ILE B 276 CRYST1 74.386 74.386 260.510 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003839 0.00000 CONECT 4779 4804 4808 4810 CONECT 4780 4781 4783 CONECT 4781 4780 4807 4810 CONECT 4782 4785 4807 CONECT 4783 4780 4808 CONECT 4784 4804 4809 CONECT 4785 4782 4796 CONECT 4786 4788 4795 4805 CONECT 4787 4788 4789 4804 CONECT 4788 4786 4787 CONECT 4789 4787 4806 CONECT 4790 4791 4798 CONECT 4791 4790 4797 CONECT 4792 4793 4799 CONECT 4793 4792 4794 4798 CONECT 4794 4793 4797 CONECT 4795 4786 4802 CONECT 4796 4785 4803 CONECT 4797 4791 4794 CONECT 4798 4790 4793 CONECT 4799 4792 4800 CONECT 4800 4799 4801 4805 CONECT 4801 4800 CONECT 4802 4795 4803 CONECT 4803 4796 4802 CONECT 4804 4779 4784 4787 CONECT 4805 4786 4800 4806 CONECT 4806 4789 4805 CONECT 4807 4781 4782 CONECT 4808 4779 4783 4809 CONECT 4809 4784 4808 CONECT 4810 4779 4781 CONECT 4811 4812 4813 4814 4815 CONECT 4812 4811 CONECT 4813 4811 CONECT 4814 4811 CONECT 4815 4811 CONECT 4816 4817 4818 4819 4820 CONECT 4817 4816 CONECT 4818 4816 CONECT 4819 4816 CONECT 4820 4816 CONECT 4821 4822 4823 4824 4825 CONECT 4822 4821 CONECT 4823 4821 CONECT 4824 4821 CONECT 4825 4821 CONECT 4826 4851 4855 4857 CONECT 4827 4828 4830 CONECT 4828 4827 4854 4857 CONECT 4829 4832 4854 CONECT 4830 4827 4855 CONECT 4831 4851 4856 CONECT 4832 4829 4843 CONECT 4833 4835 4842 4852 CONECT 4834 4835 4836 4851 CONECT 4835 4833 4834 CONECT 4836 4834 4853 CONECT 4837 4838 4845 CONECT 4838 4837 4844 CONECT 4839 4840 4846 CONECT 4840 4839 4841 4845 CONECT 4841 4840 4844 CONECT 4842 4833 4849 CONECT 4843 4832 4850 CONECT 4844 4838 4841 CONECT 4845 4837 4840 CONECT 4846 4839 4847 CONECT 4847 4846 4848 4852 CONECT 4848 4847 CONECT 4849 4842 4850 CONECT 4850 4843 4849 CONECT 4851 4826 4831 4834 CONECT 4852 4833 4847 4853 CONECT 4853 4836 4852 CONECT 4854 4828 4829 CONECT 4855 4826 4830 4856 CONECT 4856 4831 4855 CONECT 4857 4826 4828 CONECT 4858 4859 4860 4861 4862 CONECT 4859 4858 CONECT 4860 4858 CONECT 4861 4858 CONECT 4862 4858 CONECT 4863 4864 4865 4866 4867 CONECT 4864 4863 CONECT 4865 4863 CONECT 4866 4863 CONECT 4867 4863 MASTER 397 0 7 25 20 0 0 6 5014 2 89 50 END