data_9QGX # _entry.id 9QGX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9QGX pdb_00009qgx 10.2210/pdb9qgx/pdb WWPDB D_1292146380 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-03-25 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9QGX _pdbx_database_status.recvd_initial_deposition_date 2025-03-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'contains same protein in complex with dsDNA containing different sequence' _pdbx_database_related.db_id 9QGV _pdbx_database_related.content_type unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 julia.richardson@ed.ac.uk Julia Richardson M 'principal investigator/group leader' 0000-0002-1547-3009 3 sam31@st-andrews.ac.uk Stuart MacNeill ? 'principal investigator/group leader' 0000-0002-0555-0007 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Richardson, J.M.' 1 0000-0002-1547-3009 'MacNeill, S.A.' 2 0000-0002-0555-0007 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure and function of the nicking endonuclease from Escherichia phage T5' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richardson, J.M.' 1 0000-0002-1547-3009 primary 'MacNeill, S.A.' 2 0000-0002-0555-0007 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nicking endonuclease' 17235.746 1 3.1.21.- H42A ? 'N-terminal 3 amino acids are left over from the Tobacco Etch virus cleavage site.' 2 polymer syn ;DNA (5'-D(*C*CP*AP*GP*GP*CP*GP*CP*AP*G)-3') ; 3055.006 1 ? ? ? ? 3 polymer man ;DNA (5'-D(*C*TP*GP*CP*GP*CP*CP*TP*GP*G)-3') ; 3036.979 1 ? ? ? ? 4 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 7 water nat water 18.015 27 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QGAMATNTKYKRDAISIMRDGIKSRYSKDGCCAICGSSEDLELHAYHTISQLIKKFAKELQLDFTDENIVLSNREAFYKK YEHELVRDVVTLCQHHHQLLHKVYTKEPPLFSANKQKAWVQKQKDKIQNPQEKTQVKTETKSGFARFL ; ;QGAMATNTKYKRDAISIMRDGIKSRYSKDGCCAICGSSEDLELHAYHTISQLIKKFAKELQLDFTDENIVLSNREAFYKK YEHELVRDVVTLCQHHHQLLHKVYTKEPPLFSANKQKAWVQKQKDKIQNPQEKTQVKTETKSGFARFL ; A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DG)(DG)(DC)(DG)(DC)(DA)(DG)' CCAGGCGCAG B ? 3 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DC)(DG)(DC)(DC)(DT)(DG)(DG)' CTGCGCCTGG C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 IMIDAZOLE IMD 5 'ACETATE ION' ACT 6 'ZINC ION' ZN 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 GLY n 1 3 ALA n 1 4 MET n 1 5 ALA n 1 6 THR n 1 7 ASN n 1 8 THR n 1 9 LYS n 1 10 TYR n 1 11 LYS n 1 12 ARG n 1 13 ASP n 1 14 ALA n 1 15 ILE n 1 16 SER n 1 17 ILE n 1 18 MET n 1 19 ARG n 1 20 ASP n 1 21 GLY n 1 22 ILE n 1 23 LYS n 1 24 SER n 1 25 ARG n 1 26 TYR n 1 27 SER n 1 28 LYS n 1 29 ASP n 1 30 GLY n 1 31 CYS n 1 32 CYS n 1 33 ALA n 1 34 ILE n 1 35 CYS n 1 36 GLY n 1 37 SER n 1 38 SER n 1 39 GLU n 1 40 ASP n 1 41 LEU n 1 42 GLU n 1 43 LEU n 1 44 HIS n 1 45 ALA n 1 46 TYR n 1 47 HIS n 1 48 THR n 1 49 ILE n 1 50 SER n 1 51 GLN n 1 52 LEU n 1 53 ILE n 1 54 LYS n 1 55 LYS n 1 56 PHE n 1 57 ALA n 1 58 LYS n 1 59 GLU n 1 60 LEU n 1 61 GLN n 1 62 LEU n 1 63 ASP n 1 64 PHE n 1 65 THR n 1 66 ASP n 1 67 GLU n 1 68 ASN n 1 69 ILE n 1 70 VAL n 1 71 LEU n 1 72 SER n 1 73 ASN n 1 74 ARG n 1 75 GLU n 1 76 ALA n 1 77 PHE n 1 78 TYR n 1 79 LYS n 1 80 LYS n 1 81 TYR n 1 82 GLU n 1 83 HIS n 1 84 GLU n 1 85 LEU n 1 86 VAL n 1 87 ARG n 1 88 ASP n 1 89 VAL n 1 90 VAL n 1 91 THR n 1 92 LEU n 1 93 CYS n 1 94 GLN n 1 95 HIS n 1 96 HIS n 1 97 HIS n 1 98 GLN n 1 99 LEU n 1 100 LEU n 1 101 HIS n 1 102 LYS n 1 103 VAL n 1 104 TYR n 1 105 THR n 1 106 LYS n 1 107 GLU n 1 108 PRO n 1 109 PRO n 1 110 LEU n 1 111 PHE n 1 112 SER n 1 113 ALA n 1 114 ASN n 1 115 LYS n 1 116 GLN n 1 117 LYS n 1 118 ALA n 1 119 TRP n 1 120 VAL n 1 121 GLN n 1 122 LYS n 1 123 GLN n 1 124 LYS n 1 125 ASP n 1 126 LYS n 1 127 ILE n 1 128 GLN n 1 129 ASN n 1 130 PRO n 1 131 GLN n 1 132 GLU n 1 133 LYS n 1 134 THR n 1 135 GLN n 1 136 VAL n 1 137 LYS n 1 138 THR n 1 139 GLU n 1 140 THR n 1 141 LYS n 1 142 SER n 1 143 GLY n 1 144 PHE n 1 145 ALA n 1 146 ARG n 1 147 PHE n 1 148 LEU n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DC n 2 9 DA n 2 10 DG n 3 1 DC n 3 2 DT n 3 3 DG n 3 4 DC n 3 5 DG n 3 6 DC n 3 7 DC n 3 8 DT n 3 9 DG n 3 10 DG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 148 ? ? 'ORF142, T5.153, T5p149' ? ? ? ? ? ? 'Escherichia phage T5' 2695836 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 10 ? ? ? ? ? ? ? ? ? 'Escherichia phage T5' 2695836 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Escherichia phage T5' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2695836 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 -2 ? ? ? A . n A 1 2 GLY 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 ALA 5 2 ? ? ? A . n A 1 6 THR 6 3 ? ? ? A . n A 1 7 ASN 7 4 ? ? ? A . n A 1 8 THR 8 5 ? ? ? A . n A 1 9 LYS 9 6 ? ? ? A . n A 1 10 TYR 10 7 ? ? ? A . n A 1 11 LYS 11 8 8 LYS LYS A . n A 1 12 ARG 12 9 9 ARG ARG A . n A 1 13 ASP 13 10 10 ASP ASP A . n A 1 14 ALA 14 11 11 ALA ALA A . n A 1 15 ILE 15 12 12 ILE ILE A . n A 1 16 SER 16 13 13 SER SER A . n A 1 17 ILE 17 14 14 ILE ILE A . n A 1 18 MET 18 15 15 MET MET A . n A 1 19 ARG 19 16 16 ARG ARG A . n A 1 20 ASP 20 17 17 ASP ASP A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 ILE 22 19 19 ILE ILE A . n A 1 23 LYS 23 20 20 LYS LYS A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 ARG 25 22 22 ARG ARG A . n A 1 26 TYR 26 23 23 TYR TYR A . n A 1 27 SER 27 24 24 SER SER A . n A 1 28 LYS 28 25 25 LYS LYS A . n A 1 29 ASP 29 26 26 ASP ASP A . n A 1 30 GLY 30 27 27 GLY GLY A . n A 1 31 CYS 31 28 28 CYS CYS A . n A 1 32 CYS 32 29 29 CYS CYS A . n A 1 33 ALA 33 30 30 ALA ALA A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 CYS 35 32 32 CYS CYS A . n A 1 36 GLY 36 33 33 GLY GLY A . n A 1 37 SER 37 34 34 SER SER A . n A 1 38 SER 38 35 35 SER SER A . n A 1 39 GLU 39 36 36 GLU GLU A . n A 1 40 ASP 40 37 37 ASP ASP A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 GLU 42 39 39 GLU GLU A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 HIS 44 41 41 HIS HIS A . n A 1 45 ALA 45 42 42 ALA ALA A . n A 1 46 TYR 46 43 43 TYR TYR A . n A 1 47 HIS 47 44 44 HIS HIS A . n A 1 48 THR 48 45 45 THR THR A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 GLN 51 48 48 GLN GLN A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 LYS 54 51 51 LYS LYS A . n A 1 55 LYS 55 52 52 LYS LYS A . n A 1 56 PHE 56 53 53 PHE PHE A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 GLN 61 58 58 GLN GLN A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 ASP 63 60 60 ASP ASP A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 THR 65 62 62 THR THR A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 ASN 68 65 65 ASN ASN A . n A 1 69 ILE 69 66 66 ILE ILE A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 ASN 73 70 70 ASN ASN A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 GLU 75 72 72 GLU GLU A . n A 1 76 ALA 76 73 73 ALA ALA A . n A 1 77 PHE 77 74 74 PHE PHE A . n A 1 78 TYR 78 75 75 TYR TYR A . n A 1 79 LYS 79 76 76 LYS LYS A . n A 1 80 LYS 80 77 77 LYS LYS A . n A 1 81 TYR 81 78 78 TYR TYR A . n A 1 82 GLU 82 79 79 GLU GLU A . n A 1 83 HIS 83 80 80 HIS HIS A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 VAL 86 83 83 VAL VAL A . n A 1 87 ARG 87 84 84 ARG ARG A . n A 1 88 ASP 88 85 85 ASP ASP A . n A 1 89 VAL 89 86 86 VAL VAL A . n A 1 90 VAL 90 87 87 VAL VAL A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 CYS 93 90 90 CYS CYS A . n A 1 94 GLN 94 91 91 GLN GLN A . n A 1 95 HIS 95 92 92 HIS HIS A . n A 1 96 HIS 96 93 93 HIS HIS A . n A 1 97 HIS 97 94 94 HIS HIS A . n A 1 98 GLN 98 95 95 GLN GLN A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 LEU 100 97 97 LEU LEU A . n A 1 101 HIS 101 98 98 HIS HIS A . n A 1 102 LYS 102 99 99 LYS LYS A . n A 1 103 VAL 103 100 100 VAL VAL A . n A 1 104 TYR 104 101 101 TYR TYR A . n A 1 105 THR 105 102 102 THR THR A . n A 1 106 LYS 106 103 103 LYS LYS A . n A 1 107 GLU 107 104 104 GLU GLU A . n A 1 108 PRO 108 105 105 PRO PRO A . n A 1 109 PRO 109 106 106 PRO PRO A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 PHE 111 108 108 PHE PHE A . n A 1 112 SER 112 109 109 SER SER A . n A 1 113 ALA 113 110 110 ALA ALA A . n A 1 114 ASN 114 111 111 ASN ASN A . n A 1 115 LYS 115 112 112 LYS LYS A . n A 1 116 GLN 116 113 113 GLN GLN A . n A 1 117 LYS 117 114 114 LYS LYS A . n A 1 118 ALA 118 115 115 ALA ALA A . n A 1 119 TRP 119 116 116 TRP TRP A . n A 1 120 VAL 120 117 117 VAL VAL A . n A 1 121 GLN 121 118 118 GLN GLN A . n A 1 122 LYS 122 119 119 LYS LYS A . n A 1 123 GLN 123 120 120 GLN GLN A . n A 1 124 LYS 124 121 121 LYS LYS A . n A 1 125 ASP 125 122 122 ASP ASP A . n A 1 126 LYS 126 123 123 LYS LYS A . n A 1 127 ILE 127 124 124 ILE ILE A . n A 1 128 GLN 128 125 125 GLN GLN A . n A 1 129 ASN 129 126 126 ASN ASN A . n A 1 130 PRO 130 127 127 PRO PRO A . n A 1 131 GLN 131 128 128 GLN GLN A . n A 1 132 GLU 132 129 ? ? ? A . n A 1 133 LYS 133 130 ? ? ? A . n A 1 134 THR 134 131 ? ? ? A . n A 1 135 GLN 135 132 ? ? ? A . n A 1 136 VAL 136 133 ? ? ? A . n A 1 137 LYS 137 134 ? ? ? A . n A 1 138 THR 138 135 ? ? ? A . n A 1 139 GLU 139 136 ? ? ? A . n A 1 140 THR 140 137 ? ? ? A . n A 1 141 LYS 141 138 ? ? ? A . n A 1 142 SER 142 139 ? ? ? A . n A 1 143 GLY 143 140 ? ? ? A . n A 1 144 PHE 144 141 ? ? ? A . n A 1 145 ALA 145 142 ? ? ? A . n A 1 146 ARG 146 143 ? ? ? A . n A 1 147 PHE 147 144 ? ? ? A . n A 1 148 LEU 148 145 ? ? ? A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DG 10 10 10 DG DG B . n C 3 1 DC 1 -10 -10 DC DC C . n C 3 2 DT 2 -9 -9 DT DT C . n C 3 3 DG 3 -8 -8 DG DG C . n C 3 4 DC 4 -7 -7 DC DC C . n C 3 5 DG 5 -6 -6 DG DG C . n C 3 6 DC 6 -5 -5 DC DC C . n C 3 7 DC 7 -4 -4 DC DC C . n C 3 8 DT 8 -3 -3 DT DT C . n C 3 9 DG 9 -2 -2 DG DG C . n C 3 10 DG 10 -1 -1 DG DG C . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 IMD ? ? IMD ? ? 'SUBJECT OF INVESTIGATION' ? 2 ZN ? ? ZN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IMD 1 201 201 IMD IMD A . E 5 ACT 1 202 203 ACT ACT A . F 6 ZN 1 203 1 ZN ZN A . G 6 ZN 1 204 2 ZN ZN A . H 7 HOH 1 301 7 HOH HOH A . H 7 HOH 2 302 14 HOH HOH A . H 7 HOH 3 303 30 HOH HOH A . H 7 HOH 4 304 17 HOH HOH A . H 7 HOH 5 305 36 HOH HOH A . H 7 HOH 6 306 33 HOH HOH A . H 7 HOH 7 307 32 HOH HOH A . H 7 HOH 8 308 9 HOH HOH A . H 7 HOH 9 309 29 HOH HOH A . H 7 HOH 10 310 1 HOH HOH A . H 7 HOH 11 311 27 HOH HOH A . H 7 HOH 12 312 3 HOH HOH A . H 7 HOH 13 313 2 HOH HOH A . H 7 HOH 14 314 28 HOH HOH A . H 7 HOH 15 315 6 HOH HOH A . H 7 HOH 16 316 35 HOH HOH A . H 7 HOH 17 317 31 HOH HOH A . H 7 HOH 18 318 15 HOH HOH A . H 7 HOH 19 319 25 HOH HOH A . H 7 HOH 20 320 23 HOH HOH A . H 7 HOH 21 321 26 HOH HOH A . H 7 HOH 22 322 24 HOH HOH A . I 7 HOH 1 101 5 HOH HOH B . I 7 HOH 2 102 19 HOH HOH B . I 7 HOH 3 103 34 HOH HOH B . J 7 HOH 1 101 10 HOH HOH C . J 7 HOH 2 102 4 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.1_4122 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.1_4122 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 96.627 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9QGX _cell.details ? _cell.formula_units_Z ? _cell.length_a 33.125 _cell.length_a_esd ? _cell.length_b 72.122 _cell.length_b_esd ? _cell.length_c 40.334 _cell.length_c_esd ? _cell.volume 95714.272 _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9QGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9QGX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M sodium acetate trihydrate pH 7.0 and 20% (w/v) PEG 3350 (PEGIon screen condition G2, Hampton Research)' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 290 # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 XE 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-09 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95373 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.95373 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 37.75 _reflns.entry_id 9QGX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.347 _reflns.d_resolution_low 36.06 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7927 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.988 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.206 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.347 _reflns_shell.d_res_low 2.38 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 361 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.297 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 90 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.053 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 58.56 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9QGX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.35 _refine.ls_d_res_low 32.90 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7827 _refine.ls_number_reflns_R_free 417 _refine.ls_number_reflns_R_work 7410 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.60 _refine.ls_percent_reflns_R_free 5.33 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2196 _refine.ls_R_factor_R_free 0.2665 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2169 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.8257 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4001 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 32.90 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 1439 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 997 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0025 ? 1477 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.4836 ? 2067 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0371 ? 225 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0028 ? 196 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 24.3648 ? 583 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.35 2.43 . . 115 2423 96.94 . . . . 0.3216 . . . . . . . . . . . . . . . 0.3569 'X-RAY DIFFRACTION' 2.69 3.38 . . 153 2464 98.90 . . . . 0.2566 . . . . . . . . . . . . . . . 0.2960 'X-RAY DIFFRACTION' 3.38 32.90 . . 149 2523 99.93 . . . . 0.1801 . . . . . . . . . . . . . . . 0.2374 # _struct.entry_id 9QGX _struct.title 'SciA(H42A) endonuclease from Escherichia phage T5 in complex with 10 bp DNA (GCGC sequence 1)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9QGX _struct_keywords.text 'HNH endonuclease, His-Me endonuclease, bacteriophage T5, nicked genome, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 7 ? I N N 7 ? J N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP ENDON_BPT5 Q6QGD4 ? 1 ;MATNTKYKRDAISIMRDGIKSRYSKDGCCAICGSSEDLELHHYHTISQLIKKFAKELQLDFTDENIVLSNREAFYKKYEH ELVRDVVTLCQHHHQLLHKVYTKEPPLFSANKQKAWVQKQKDKIQNPQEKTQVKTETKSGFARFL ; 1 2 PDB 9QGX 9QGX ? 2 ? 1 3 PDB 9QGX 9QGX ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9QGX A 4 ? 148 ? Q6QGD4 1 ? 145 ? 1 145 2 2 9QGX B 1 ? 10 ? 9QGX 1 ? 10 ? 1 10 3 3 9QGX C 1 ? 10 ? 9QGX -10 ? -1 ? -10 -1 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9QGX GLN A 1 ? UNP Q6QGD4 ? ? 'expression tag' -2 1 1 9QGX GLY A 2 ? UNP Q6QGD4 ? ? 'expression tag' -1 2 1 9QGX ALA A 3 ? UNP Q6QGD4 ? ? 'expression tag' 0 3 1 9QGX ALA A 45 ? UNP Q6QGD4 HIS 42 'engineered mutation' 42 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2750 ? 1 MORE -46 ? 1 'SSA (A^2)' 10170 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 13 ? GLY A 21 ? ASP A 10 GLY A 18 1 ? 9 HELX_P HELX_P2 AA2 ILE A 22 ? TYR A 26 ? ILE A 19 TYR A 23 5 ? 5 HELX_P HELX_P3 AA3 THR A 48 ? LEU A 60 ? THR A 45 LEU A 57 1 ? 13 HELX_P HELX_P4 AA4 ASP A 66 ? ASN A 73 ? ASP A 63 ASN A 70 1 ? 8 HELX_P HELX_P5 AA5 ASN A 73 ? ARG A 87 ? ASN A 70 ARG A 84 1 ? 15 HELX_P HELX_P6 AA6 GLN A 94 ? TYR A 104 ? GLN A 91 TYR A 101 1 ? 11 HELX_P HELX_P7 AA7 PRO A 109 ? PHE A 111 ? PRO A 106 PHE A 108 5 ? 3 HELX_P HELX_P8 AA8 SER A 112 ? ASN A 129 ? SER A 109 ASN A 126 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 32 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 29 A ZN 203 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc2 metalc ? ? A CYS 35 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 32 A ZN 203 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc3 metalc ? ? A HIS 44 ND1 ? ? ? 1_555 G ZN . ZN ? ? A HIS 41 A ZN 204 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc4 metalc ? ? A CYS 93 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 90 A ZN 203 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc5 metalc ? ? A HIS 96 ND1 ? ? ? 1_555 F ZN . ZN ? ? A HIS 93 A ZN 203 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc6 metalc ? ? A HIS 97 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 94 A ZN 204 1_555 ? ? ? ? ? ? ? 2.309 ? ? metalc7 metalc ? ? A HIS 101 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 98 A ZN 204 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc8 metalc ? ? D IMD . N1 ? ? ? 1_555 G ZN . ZN ? ? A IMD 201 A ZN 204 1_555 ? ? ? ? ? ? ? 2.538 ? ? metalc9 metalc ? ? D IMD . N3 ? ? ? 1_555 G ZN . ZN ? ? A IMD 201 A ZN 204 1_555 ? ? ? ? ? ? ? 2.367 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 1 C DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 1 C DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 1 C DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 2 C DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 2 C DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 2 C DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 3 C DT -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 3 C DT -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 4 C DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 4 C DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 4 C DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 5 C DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 5 C DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 5 C DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 5 N1 ? ? B DC 6 C DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 5 O6 ? ? B DC 6 C DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 6 C DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 7 C DC -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 7 C DC -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 7 C DC -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 8 C DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 8 C DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 8 C DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 9 C DT -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 9 C DT -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 10 C DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 10 C DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 10 C DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 32 ? A CYS 29 ? 1_555 ZN ? F ZN . ? A ZN 203 ? 1_555 SG ? A CYS 35 ? A CYS 32 ? 1_555 109.4 ? 2 SG ? A CYS 32 ? A CYS 29 ? 1_555 ZN ? F ZN . ? A ZN 203 ? 1_555 SG ? A CYS 93 ? A CYS 90 ? 1_555 112.1 ? 3 SG ? A CYS 35 ? A CYS 32 ? 1_555 ZN ? F ZN . ? A ZN 203 ? 1_555 SG ? A CYS 93 ? A CYS 90 ? 1_555 111.9 ? 4 SG ? A CYS 32 ? A CYS 29 ? 1_555 ZN ? F ZN . ? A ZN 203 ? 1_555 ND1 ? A HIS 96 ? A HIS 93 ? 1_555 119.3 ? 5 SG ? A CYS 35 ? A CYS 32 ? 1_555 ZN ? F ZN . ? A ZN 203 ? 1_555 ND1 ? A HIS 96 ? A HIS 93 ? 1_555 108.0 ? 6 SG ? A CYS 93 ? A CYS 90 ? 1_555 ZN ? F ZN . ? A ZN 203 ? 1_555 ND1 ? A HIS 96 ? A HIS 93 ? 1_555 95.5 ? 7 ND1 ? A HIS 44 ? A HIS 41 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 NE2 ? A HIS 97 ? A HIS 94 ? 1_555 112.5 ? 8 ND1 ? A HIS 44 ? A HIS 41 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 NE2 ? A HIS 101 ? A HIS 98 ? 1_555 94.0 ? 9 NE2 ? A HIS 97 ? A HIS 94 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 NE2 ? A HIS 101 ? A HIS 98 ? 1_555 106.2 ? 10 ND1 ? A HIS 44 ? A HIS 41 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 N1 ? D IMD . ? A IMD 201 ? 1_555 137.2 ? 11 NE2 ? A HIS 97 ? A HIS 94 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 N1 ? D IMD . ? A IMD 201 ? 1_555 79.0 ? 12 NE2 ? A HIS 101 ? A HIS 98 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 N1 ? D IMD . ? A IMD 201 ? 1_555 123.4 ? 13 ND1 ? A HIS 44 ? A HIS 41 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 N3 ? D IMD . ? A IMD 201 ? 1_555 105.6 ? 14 NE2 ? A HIS 97 ? A HIS 94 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 N3 ? D IMD . ? A IMD 201 ? 1_555 132.0 ? 15 NE2 ? A HIS 101 ? A HIS 98 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 N3 ? D IMD . ? A IMD 201 ? 1_555 99.0 ? 16 N1 ? D IMD . ? A IMD 201 ? 1_555 ZN ? G ZN . ? A ZN 204 ? 1_555 N3 ? D IMD . ? A IMD 201 ? 1_555 53.1 ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 41 ? ALA A 45 ? LEU A 38 ALA A 42 AA1 2 VAL A 89 ? CYS A 93 ? VAL A 86 CYS A 90 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 42 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 39 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LEU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 92 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 89 # _pdbx_entry_details.entry_id 9QGX _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 31 ? ? -97.60 -61.60 2 1 ILE A 124 ? ? -130.03 -43.62 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN -2 ? A GLN 1 2 1 Y 1 A GLY -1 ? A GLY 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A ALA 2 ? A ALA 5 6 1 Y 1 A THR 3 ? A THR 6 7 1 Y 1 A ASN 4 ? A ASN 7 8 1 Y 1 A THR 5 ? A THR 8 9 1 Y 1 A LYS 6 ? A LYS 9 10 1 Y 1 A TYR 7 ? A TYR 10 11 1 Y 1 A GLU 129 ? A GLU 132 12 1 Y 1 A LYS 130 ? A LYS 133 13 1 Y 1 A THR 131 ? A THR 134 14 1 Y 1 A GLN 132 ? A GLN 135 15 1 Y 1 A VAL 133 ? A VAL 136 16 1 Y 1 A LYS 134 ? A LYS 137 17 1 Y 1 A THR 135 ? A THR 138 18 1 Y 1 A GLU 136 ? A GLU 139 19 1 Y 1 A THR 137 ? A THR 140 20 1 Y 1 A LYS 138 ? A LYS 141 21 1 Y 1 A SER 139 ? A SER 142 22 1 Y 1 A GLY 140 ? A GLY 143 23 1 Y 1 A PHE 141 ? A PHE 144 24 1 Y 1 A ALA 142 ? A ALA 145 25 1 Y 1 A ARG 143 ? A ARG 146 26 1 Y 1 A PHE 144 ? A PHE 147 27 1 Y 1 A LEU 145 ? A LEU 148 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CYS N N N N 81 CYS CA C N R 82 CYS C C N N 83 CYS O O N N 84 CYS CB C N N 85 CYS SG S N N 86 CYS OXT O N N 87 CYS H H N N 88 CYS H2 H N N 89 CYS HA H N N 90 CYS HB2 H N N 91 CYS HB3 H N N 92 CYS HG H N N 93 CYS HXT H N N 94 DA OP3 O N N 95 DA P P N N 96 DA OP1 O N N 97 DA OP2 O N N 98 DA "O5'" O N N 99 DA "C5'" C N N 100 DA "C4'" C N R 101 DA "O4'" O N N 102 DA "C3'" C N S 103 DA "O3'" O N N 104 DA "C2'" C N N 105 DA "C1'" C N R 106 DA N9 N Y N 107 DA C8 C Y N 108 DA N7 N Y N 109 DA C5 C Y N 110 DA C6 C Y N 111 DA N6 N N N 112 DA N1 N Y N 113 DA C2 C Y N 114 DA N3 N Y N 115 DA C4 C Y N 116 DA HOP3 H N N 117 DA HOP2 H N N 118 DA "H5'" H N N 119 DA "H5''" H N N 120 DA "H4'" H N N 121 DA "H3'" H N N 122 DA "HO3'" H N N 123 DA "H2'" H N N 124 DA "H2''" H N N 125 DA "H1'" H N N 126 DA H8 H N N 127 DA H61 H N N 128 DA H62 H N N 129 DA H2 H N N 130 DC OP3 O N N 131 DC P P N N 132 DC OP1 O N N 133 DC OP2 O N N 134 DC "O5'" O N N 135 DC "C5'" C N N 136 DC "C4'" C N R 137 DC "O4'" O N N 138 DC "C3'" C N S 139 DC "O3'" O N N 140 DC "C2'" C N N 141 DC "C1'" C N R 142 DC N1 N N N 143 DC C2 C N N 144 DC O2 O N N 145 DC N3 N N N 146 DC C4 C N N 147 DC N4 N N N 148 DC C5 C N N 149 DC C6 C N N 150 DC HOP3 H N N 151 DC HOP2 H N N 152 DC "H5'" H N N 153 DC "H5''" H N N 154 DC "H4'" H N N 155 DC "H3'" H N N 156 DC "HO3'" H N N 157 DC "H2'" H N N 158 DC "H2''" H N N 159 DC "H1'" H N N 160 DC H41 H N N 161 DC H42 H N N 162 DC H5 H N N 163 DC H6 H N N 164 DG OP3 O N N 165 DG P P N N 166 DG OP1 O N N 167 DG OP2 O N N 168 DG "O5'" O N N 169 DG "C5'" C N N 170 DG "C4'" C N R 171 DG "O4'" O N N 172 DG "C3'" C N S 173 DG "O3'" O N N 174 DG "C2'" C N N 175 DG "C1'" C N R 176 DG N9 N Y N 177 DG C8 C Y N 178 DG N7 N Y N 179 DG C5 C Y N 180 DG C6 C N N 181 DG O6 O N N 182 DG N1 N N N 183 DG C2 C N N 184 DG N2 N N N 185 DG N3 N N N 186 DG C4 C Y N 187 DG HOP3 H N N 188 DG HOP2 H N N 189 DG "H5'" H N N 190 DG "H5''" H N N 191 DG "H4'" H N N 192 DG "H3'" H N N 193 DG "HO3'" H N N 194 DG "H2'" H N N 195 DG "H2''" H N N 196 DG "H1'" H N N 197 DG H8 H N N 198 DG H1 H N N 199 DG H21 H N N 200 DG H22 H N N 201 DT OP3 O N N 202 DT P P N N 203 DT OP1 O N N 204 DT OP2 O N N 205 DT "O5'" O N N 206 DT "C5'" C N N 207 DT "C4'" C N R 208 DT "O4'" O N N 209 DT "C3'" C N S 210 DT "O3'" O N N 211 DT "C2'" C N N 212 DT "C1'" C N R 213 DT N1 N N N 214 DT C2 C N N 215 DT O2 O N N 216 DT N3 N N N 217 DT C4 C N N 218 DT O4 O N N 219 DT C5 C N N 220 DT C7 C N N 221 DT C6 C N N 222 DT HOP3 H N N 223 DT HOP2 H N N 224 DT "H5'" H N N 225 DT "H5''" H N N 226 DT "H4'" H N N 227 DT "H3'" H N N 228 DT "HO3'" H N N 229 DT "H2'" H N N 230 DT "H2''" H N N 231 DT "H1'" H N N 232 DT H3 H N N 233 DT H71 H N N 234 DT H72 H N N 235 DT H73 H N N 236 DT H6 H N N 237 GLN N N N N 238 GLN CA C N S 239 GLN C C N N 240 GLN O O N N 241 GLN CB C N N 242 GLN CG C N N 243 GLN CD C N N 244 GLN OE1 O N N 245 GLN NE2 N N N 246 GLN OXT O N N 247 GLN H H N N 248 GLN H2 H N N 249 GLN HA H N N 250 GLN HB2 H N N 251 GLN HB3 H N N 252 GLN HG2 H N N 253 GLN HG3 H N N 254 GLN HE21 H N N 255 GLN HE22 H N N 256 GLN HXT H N N 257 GLU N N N N 258 GLU CA C N S 259 GLU C C N N 260 GLU O O N N 261 GLU CB C N N 262 GLU CG C N N 263 GLU CD C N N 264 GLU OE1 O N N 265 GLU OE2 O N N 266 GLU OXT O N N 267 GLU H H N N 268 GLU H2 H N N 269 GLU HA H N N 270 GLU HB2 H N N 271 GLU HB3 H N N 272 GLU HG2 H N N 273 GLU HG3 H N N 274 GLU HE2 H N N 275 GLU HXT H N N 276 GLY N N N N 277 GLY CA C N N 278 GLY C C N N 279 GLY O O N N 280 GLY OXT O N N 281 GLY H H N N 282 GLY H2 H N N 283 GLY HA2 H N N 284 GLY HA3 H N N 285 GLY HXT H N N 286 HIS N N N N 287 HIS CA C N S 288 HIS C C N N 289 HIS O O N N 290 HIS CB C N N 291 HIS CG C Y N 292 HIS ND1 N Y N 293 HIS CD2 C Y N 294 HIS CE1 C Y N 295 HIS NE2 N Y N 296 HIS OXT O N N 297 HIS H H N N 298 HIS H2 H N N 299 HIS HA H N N 300 HIS HB2 H N N 301 HIS HB3 H N N 302 HIS HD1 H N N 303 HIS HD2 H N N 304 HIS HE1 H N N 305 HIS HE2 H N N 306 HIS HXT H N N 307 HOH O O N N 308 HOH H1 H N N 309 HOH H2 H N N 310 ILE N N N N 311 ILE CA C N S 312 ILE C C N N 313 ILE O O N N 314 ILE CB C N S 315 ILE CG1 C N N 316 ILE CG2 C N N 317 ILE CD1 C N N 318 ILE OXT O N N 319 ILE H H N N 320 ILE H2 H N N 321 ILE HA H N N 322 ILE HB H N N 323 ILE HG12 H N N 324 ILE HG13 H N N 325 ILE HG21 H N N 326 ILE HG22 H N N 327 ILE HG23 H N N 328 ILE HD11 H N N 329 ILE HD12 H N N 330 ILE HD13 H N N 331 ILE HXT H N N 332 IMD N1 N Y N 333 IMD C2 C Y N 334 IMD N3 N Y N 335 IMD C4 C Y N 336 IMD C5 C Y N 337 IMD HN1 H N N 338 IMD H2 H N N 339 IMD HN3 H N N 340 IMD H4 H N N 341 IMD H5 H N N 342 LEU N N N N 343 LEU CA C N S 344 LEU C C N N 345 LEU O O N N 346 LEU CB C N N 347 LEU CG C N N 348 LEU CD1 C N N 349 LEU CD2 C N N 350 LEU OXT O N N 351 LEU H H N N 352 LEU H2 H N N 353 LEU HA H N N 354 LEU HB2 H N N 355 LEU HB3 H N N 356 LEU HG H N N 357 LEU HD11 H N N 358 LEU HD12 H N N 359 LEU HD13 H N N 360 LEU HD21 H N N 361 LEU HD22 H N N 362 LEU HD23 H N N 363 LEU HXT H N N 364 LYS N N N N 365 LYS CA C N S 366 LYS C C N N 367 LYS O O N N 368 LYS CB C N N 369 LYS CG C N N 370 LYS CD C N N 371 LYS CE C N N 372 LYS NZ N N N 373 LYS OXT O N N 374 LYS H H N N 375 LYS H2 H N N 376 LYS HA H N N 377 LYS HB2 H N N 378 LYS HB3 H N N 379 LYS HG2 H N N 380 LYS HG3 H N N 381 LYS HD2 H N N 382 LYS HD3 H N N 383 LYS HE2 H N N 384 LYS HE3 H N N 385 LYS HZ1 H N N 386 LYS HZ2 H N N 387 LYS HZ3 H N N 388 LYS HXT H N N 389 MET N N N N 390 MET CA C N S 391 MET C C N N 392 MET O O N N 393 MET CB C N N 394 MET CG C N N 395 MET SD S N N 396 MET CE C N N 397 MET OXT O N N 398 MET H H N N 399 MET H2 H N N 400 MET HA H N N 401 MET HB2 H N N 402 MET HB3 H N N 403 MET HG2 H N N 404 MET HG3 H N N 405 MET HE1 H N N 406 MET HE2 H N N 407 MET HE3 H N N 408 MET HXT H N N 409 PHE N N N N 410 PHE CA C N S 411 PHE C C N N 412 PHE O O N N 413 PHE CB C N N 414 PHE CG C Y N 415 PHE CD1 C Y N 416 PHE CD2 C Y N 417 PHE CE1 C Y N 418 PHE CE2 C Y N 419 PHE CZ C Y N 420 PHE OXT O N N 421 PHE H H N N 422 PHE H2 H N N 423 PHE HA H N N 424 PHE HB2 H N N 425 PHE HB3 H N N 426 PHE HD1 H N N 427 PHE HD2 H N N 428 PHE HE1 H N N 429 PHE HE2 H N N 430 PHE HZ H N N 431 PHE HXT H N N 432 PRO N N N N 433 PRO CA C N S 434 PRO C C N N 435 PRO O O N N 436 PRO CB C N N 437 PRO CG C N N 438 PRO CD C N N 439 PRO OXT O N N 440 PRO H H N N 441 PRO HA H N N 442 PRO HB2 H N N 443 PRO HB3 H N N 444 PRO HG2 H N N 445 PRO HG3 H N N 446 PRO HD2 H N N 447 PRO HD3 H N N 448 PRO HXT H N N 449 SER N N N N 450 SER CA C N S 451 SER C C N N 452 SER O O N N 453 SER CB C N N 454 SER OG O N N 455 SER OXT O N N 456 SER H H N N 457 SER H2 H N N 458 SER HA H N N 459 SER HB2 H N N 460 SER HB3 H N N 461 SER HG H N N 462 SER HXT H N N 463 THR N N N N 464 THR CA C N S 465 THR C C N N 466 THR O O N N 467 THR CB C N R 468 THR OG1 O N N 469 THR CG2 C N N 470 THR OXT O N N 471 THR H H N N 472 THR H2 H N N 473 THR HA H N N 474 THR HB H N N 475 THR HG1 H N N 476 THR HG21 H N N 477 THR HG22 H N N 478 THR HG23 H N N 479 THR HXT H N N 480 TRP N N N N 481 TRP CA C N S 482 TRP C C N N 483 TRP O O N N 484 TRP CB C N N 485 TRP CG C Y N 486 TRP CD1 C Y N 487 TRP CD2 C Y N 488 TRP NE1 N Y N 489 TRP CE2 C Y N 490 TRP CE3 C Y N 491 TRP CZ2 C Y N 492 TRP CZ3 C Y N 493 TRP CH2 C Y N 494 TRP OXT O N N 495 TRP H H N N 496 TRP H2 H N N 497 TRP HA H N N 498 TRP HB2 H N N 499 TRP HB3 H N N 500 TRP HD1 H N N 501 TRP HE1 H N N 502 TRP HE3 H N N 503 TRP HZ2 H N N 504 TRP HZ3 H N N 505 TRP HH2 H N N 506 TRP HXT H N N 507 TYR N N N N 508 TYR CA C N S 509 TYR C C N N 510 TYR O O N N 511 TYR CB C N N 512 TYR CG C Y N 513 TYR CD1 C Y N 514 TYR CD2 C Y N 515 TYR CE1 C Y N 516 TYR CE2 C Y N 517 TYR CZ C Y N 518 TYR OH O N N 519 TYR OXT O N N 520 TYR H H N N 521 TYR H2 H N N 522 TYR HA H N N 523 TYR HB2 H N N 524 TYR HB3 H N N 525 TYR HD1 H N N 526 TYR HD2 H N N 527 TYR HE1 H N N 528 TYR HE2 H N N 529 TYR HH H N N 530 TYR HXT H N N 531 VAL N N N N 532 VAL CA C N S 533 VAL C C N N 534 VAL O O N N 535 VAL CB C N N 536 VAL CG1 C N N 537 VAL CG2 C N N 538 VAL OXT O N N 539 VAL H H N N 540 VAL H2 H N N 541 VAL HA H N N 542 VAL HB H N N 543 VAL HG11 H N N 544 VAL HG12 H N N 545 VAL HG13 H N N 546 VAL HG21 H N N 547 VAL HG22 H N N 548 VAL HG23 H N N 549 VAL HXT H N N 550 ZN ZN ZN N N 551 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 CYS N CA sing N N 76 CYS N H sing N N 77 CYS N H2 sing N N 78 CYS CA C sing N N 79 CYS CA CB sing N N 80 CYS CA HA sing N N 81 CYS C O doub N N 82 CYS C OXT sing N N 83 CYS CB SG sing N N 84 CYS CB HB2 sing N N 85 CYS CB HB3 sing N N 86 CYS SG HG sing N N 87 CYS OXT HXT sing N N 88 DA OP3 P sing N N 89 DA OP3 HOP3 sing N N 90 DA P OP1 doub N N 91 DA P OP2 sing N N 92 DA P "O5'" sing N N 93 DA OP2 HOP2 sing N N 94 DA "O5'" "C5'" sing N N 95 DA "C5'" "C4'" sing N N 96 DA "C5'" "H5'" sing N N 97 DA "C5'" "H5''" sing N N 98 DA "C4'" "O4'" sing N N 99 DA "C4'" "C3'" sing N N 100 DA "C4'" "H4'" sing N N 101 DA "O4'" "C1'" sing N N 102 DA "C3'" "O3'" sing N N 103 DA "C3'" "C2'" sing N N 104 DA "C3'" "H3'" sing N N 105 DA "O3'" "HO3'" sing N N 106 DA "C2'" "C1'" sing N N 107 DA "C2'" "H2'" sing N N 108 DA "C2'" "H2''" sing N N 109 DA "C1'" N9 sing N N 110 DA "C1'" "H1'" sing N N 111 DA N9 C8 sing Y N 112 DA N9 C4 sing Y N 113 DA C8 N7 doub Y N 114 DA C8 H8 sing N N 115 DA N7 C5 sing Y N 116 DA C5 C6 sing Y N 117 DA C5 C4 doub Y N 118 DA C6 N6 sing N N 119 DA C6 N1 doub Y N 120 DA N6 H61 sing N N 121 DA N6 H62 sing N N 122 DA N1 C2 sing Y N 123 DA C2 N3 doub Y N 124 DA C2 H2 sing N N 125 DA N3 C4 sing Y N 126 DC OP3 P sing N N 127 DC OP3 HOP3 sing N N 128 DC P OP1 doub N N 129 DC P OP2 sing N N 130 DC P "O5'" sing N N 131 DC OP2 HOP2 sing N N 132 DC "O5'" "C5'" sing N N 133 DC "C5'" "C4'" sing N N 134 DC "C5'" "H5'" sing N N 135 DC "C5'" "H5''" sing N N 136 DC "C4'" "O4'" sing N N 137 DC "C4'" "C3'" sing N N 138 DC "C4'" "H4'" sing N N 139 DC "O4'" "C1'" sing N N 140 DC "C3'" "O3'" sing N N 141 DC "C3'" "C2'" sing N N 142 DC "C3'" "H3'" sing N N 143 DC "O3'" "HO3'" sing N N 144 DC "C2'" "C1'" sing N N 145 DC "C2'" "H2'" sing N N 146 DC "C2'" "H2''" sing N N 147 DC "C1'" N1 sing N N 148 DC "C1'" "H1'" sing N N 149 DC N1 C2 sing N N 150 DC N1 C6 sing N N 151 DC C2 O2 doub N N 152 DC C2 N3 sing N N 153 DC N3 C4 doub N N 154 DC C4 N4 sing N N 155 DC C4 C5 sing N N 156 DC N4 H41 sing N N 157 DC N4 H42 sing N N 158 DC C5 C6 doub N N 159 DC C5 H5 sing N N 160 DC C6 H6 sing N N 161 DG OP3 P sing N N 162 DG OP3 HOP3 sing N N 163 DG P OP1 doub N N 164 DG P OP2 sing N N 165 DG P "O5'" sing N N 166 DG OP2 HOP2 sing N N 167 DG "O5'" "C5'" sing N N 168 DG "C5'" "C4'" sing N N 169 DG "C5'" "H5'" sing N N 170 DG "C5'" "H5''" sing N N 171 DG "C4'" "O4'" sing N N 172 DG "C4'" "C3'" sing N N 173 DG "C4'" "H4'" sing N N 174 DG "O4'" "C1'" sing N N 175 DG "C3'" "O3'" sing N N 176 DG "C3'" "C2'" sing N N 177 DG "C3'" "H3'" sing N N 178 DG "O3'" "HO3'" sing N N 179 DG "C2'" "C1'" sing N N 180 DG "C2'" "H2'" sing N N 181 DG "C2'" "H2''" sing N N 182 DG "C1'" N9 sing N N 183 DG "C1'" "H1'" sing N N 184 DG N9 C8 sing Y N 185 DG N9 C4 sing Y N 186 DG C8 N7 doub Y N 187 DG C8 H8 sing N N 188 DG N7 C5 sing Y N 189 DG C5 C6 sing N N 190 DG C5 C4 doub Y N 191 DG C6 O6 doub N N 192 DG C6 N1 sing N N 193 DG N1 C2 sing N N 194 DG N1 H1 sing N N 195 DG C2 N2 sing N N 196 DG C2 N3 doub N N 197 DG N2 H21 sing N N 198 DG N2 H22 sing N N 199 DG N3 C4 sing N N 200 DT OP3 P sing N N 201 DT OP3 HOP3 sing N N 202 DT P OP1 doub N N 203 DT P OP2 sing N N 204 DT P "O5'" sing N N 205 DT OP2 HOP2 sing N N 206 DT "O5'" "C5'" sing N N 207 DT "C5'" "C4'" sing N N 208 DT "C5'" "H5'" sing N N 209 DT "C5'" "H5''" sing N N 210 DT "C4'" "O4'" sing N N 211 DT "C4'" "C3'" sing N N 212 DT "C4'" "H4'" sing N N 213 DT "O4'" "C1'" sing N N 214 DT "C3'" "O3'" sing N N 215 DT "C3'" "C2'" sing N N 216 DT "C3'" "H3'" sing N N 217 DT "O3'" "HO3'" sing N N 218 DT "C2'" "C1'" sing N N 219 DT "C2'" "H2'" sing N N 220 DT "C2'" "H2''" sing N N 221 DT "C1'" N1 sing N N 222 DT "C1'" "H1'" sing N N 223 DT N1 C2 sing N N 224 DT N1 C6 sing N N 225 DT C2 O2 doub N N 226 DT C2 N3 sing N N 227 DT N3 C4 sing N N 228 DT N3 H3 sing N N 229 DT C4 O4 doub N N 230 DT C4 C5 sing N N 231 DT C5 C7 sing N N 232 DT C5 C6 doub N N 233 DT C7 H71 sing N N 234 DT C7 H72 sing N N 235 DT C7 H73 sing N N 236 DT C6 H6 sing N N 237 GLN N CA sing N N 238 GLN N H sing N N 239 GLN N H2 sing N N 240 GLN CA C sing N N 241 GLN CA CB sing N N 242 GLN CA HA sing N N 243 GLN C O doub N N 244 GLN C OXT sing N N 245 GLN CB CG sing N N 246 GLN CB HB2 sing N N 247 GLN CB HB3 sing N N 248 GLN CG CD sing N N 249 GLN CG HG2 sing N N 250 GLN CG HG3 sing N N 251 GLN CD OE1 doub N N 252 GLN CD NE2 sing N N 253 GLN NE2 HE21 sing N N 254 GLN NE2 HE22 sing N N 255 GLN OXT HXT sing N N 256 GLU N CA sing N N 257 GLU N H sing N N 258 GLU N H2 sing N N 259 GLU CA C sing N N 260 GLU CA CB sing N N 261 GLU CA HA sing N N 262 GLU C O doub N N 263 GLU C OXT sing N N 264 GLU CB CG sing N N 265 GLU CB HB2 sing N N 266 GLU CB HB3 sing N N 267 GLU CG CD sing N N 268 GLU CG HG2 sing N N 269 GLU CG HG3 sing N N 270 GLU CD OE1 doub N N 271 GLU CD OE2 sing N N 272 GLU OE2 HE2 sing N N 273 GLU OXT HXT sing N N 274 GLY N CA sing N N 275 GLY N H sing N N 276 GLY N H2 sing N N 277 GLY CA C sing N N 278 GLY CA HA2 sing N N 279 GLY CA HA3 sing N N 280 GLY C O doub N N 281 GLY C OXT sing N N 282 GLY OXT HXT sing N N 283 HIS N CA sing N N 284 HIS N H sing N N 285 HIS N H2 sing N N 286 HIS CA C sing N N 287 HIS CA CB sing N N 288 HIS CA HA sing N N 289 HIS C O doub N N 290 HIS C OXT sing N N 291 HIS CB CG sing N N 292 HIS CB HB2 sing N N 293 HIS CB HB3 sing N N 294 HIS CG ND1 sing Y N 295 HIS CG CD2 doub Y N 296 HIS ND1 CE1 doub Y N 297 HIS ND1 HD1 sing N N 298 HIS CD2 NE2 sing Y N 299 HIS CD2 HD2 sing N N 300 HIS CE1 NE2 sing Y N 301 HIS CE1 HE1 sing N N 302 HIS NE2 HE2 sing N N 303 HIS OXT HXT sing N N 304 HOH O H1 sing N N 305 HOH O H2 sing N N 306 ILE N CA sing N N 307 ILE N H sing N N 308 ILE N H2 sing N N 309 ILE CA C sing N N 310 ILE CA CB sing N N 311 ILE CA HA sing N N 312 ILE C O doub N N 313 ILE C OXT sing N N 314 ILE CB CG1 sing N N 315 ILE CB CG2 sing N N 316 ILE CB HB sing N N 317 ILE CG1 CD1 sing N N 318 ILE CG1 HG12 sing N N 319 ILE CG1 HG13 sing N N 320 ILE CG2 HG21 sing N N 321 ILE CG2 HG22 sing N N 322 ILE CG2 HG23 sing N N 323 ILE CD1 HD11 sing N N 324 ILE CD1 HD12 sing N N 325 ILE CD1 HD13 sing N N 326 ILE OXT HXT sing N N 327 IMD N1 C2 sing Y N 328 IMD N1 C5 sing Y N 329 IMD N1 HN1 sing N N 330 IMD C2 N3 doub Y N 331 IMD C2 H2 sing N N 332 IMD N3 C4 sing Y N 333 IMD N3 HN3 sing N N 334 IMD C4 C5 doub Y N 335 IMD C4 H4 sing N N 336 IMD C5 H5 sing N N 337 LEU N CA sing N N 338 LEU N H sing N N 339 LEU N H2 sing N N 340 LEU CA C sing N N 341 LEU CA CB sing N N 342 LEU CA HA sing N N 343 LEU C O doub N N 344 LEU C OXT sing N N 345 LEU CB CG sing N N 346 LEU CB HB2 sing N N 347 LEU CB HB3 sing N N 348 LEU CG CD1 sing N N 349 LEU CG CD2 sing N N 350 LEU CG HG sing N N 351 LEU CD1 HD11 sing N N 352 LEU CD1 HD12 sing N N 353 LEU CD1 HD13 sing N N 354 LEU CD2 HD21 sing N N 355 LEU CD2 HD22 sing N N 356 LEU CD2 HD23 sing N N 357 LEU OXT HXT sing N N 358 LYS N CA sing N N 359 LYS N H sing N N 360 LYS N H2 sing N N 361 LYS CA C sing N N 362 LYS CA CB sing N N 363 LYS CA HA sing N N 364 LYS C O doub N N 365 LYS C OXT sing N N 366 LYS CB CG sing N N 367 LYS CB HB2 sing N N 368 LYS CB HB3 sing N N 369 LYS CG CD sing N N 370 LYS CG HG2 sing N N 371 LYS CG HG3 sing N N 372 LYS CD CE sing N N 373 LYS CD HD2 sing N N 374 LYS CD HD3 sing N N 375 LYS CE NZ sing N N 376 LYS CE HE2 sing N N 377 LYS CE HE3 sing N N 378 LYS NZ HZ1 sing N N 379 LYS NZ HZ2 sing N N 380 LYS NZ HZ3 sing N N 381 LYS OXT HXT sing N N 382 MET N CA sing N N 383 MET N H sing N N 384 MET N H2 sing N N 385 MET CA C sing N N 386 MET CA CB sing N N 387 MET CA HA sing N N 388 MET C O doub N N 389 MET C OXT sing N N 390 MET CB CG sing N N 391 MET CB HB2 sing N N 392 MET CB HB3 sing N N 393 MET CG SD sing N N 394 MET CG HG2 sing N N 395 MET CG HG3 sing N N 396 MET SD CE sing N N 397 MET CE HE1 sing N N 398 MET CE HE2 sing N N 399 MET CE HE3 sing N N 400 MET OXT HXT sing N N 401 PHE N CA sing N N 402 PHE N H sing N N 403 PHE N H2 sing N N 404 PHE CA C sing N N 405 PHE CA CB sing N N 406 PHE CA HA sing N N 407 PHE C O doub N N 408 PHE C OXT sing N N 409 PHE CB CG sing N N 410 PHE CB HB2 sing N N 411 PHE CB HB3 sing N N 412 PHE CG CD1 doub Y N 413 PHE CG CD2 sing Y N 414 PHE CD1 CE1 sing Y N 415 PHE CD1 HD1 sing N N 416 PHE CD2 CE2 doub Y N 417 PHE CD2 HD2 sing N N 418 PHE CE1 CZ doub Y N 419 PHE CE1 HE1 sing N N 420 PHE CE2 CZ sing Y N 421 PHE CE2 HE2 sing N N 422 PHE CZ HZ sing N N 423 PHE OXT HXT sing N N 424 PRO N CA sing N N 425 PRO N CD sing N N 426 PRO N H sing N N 427 PRO CA C sing N N 428 PRO CA CB sing N N 429 PRO CA HA sing N N 430 PRO C O doub N N 431 PRO C OXT sing N N 432 PRO CB CG sing N N 433 PRO CB HB2 sing N N 434 PRO CB HB3 sing N N 435 PRO CG CD sing N N 436 PRO CG HG2 sing N N 437 PRO CG HG3 sing N N 438 PRO CD HD2 sing N N 439 PRO CD HD3 sing N N 440 PRO OXT HXT sing N N 441 SER N CA sing N N 442 SER N H sing N N 443 SER N H2 sing N N 444 SER CA C sing N N 445 SER CA CB sing N N 446 SER CA HA sing N N 447 SER C O doub N N 448 SER C OXT sing N N 449 SER CB OG sing N N 450 SER CB HB2 sing N N 451 SER CB HB3 sing N N 452 SER OG HG sing N N 453 SER OXT HXT sing N N 454 THR N CA sing N N 455 THR N H sing N N 456 THR N H2 sing N N 457 THR CA C sing N N 458 THR CA CB sing N N 459 THR CA HA sing N N 460 THR C O doub N N 461 THR C OXT sing N N 462 THR CB OG1 sing N N 463 THR CB CG2 sing N N 464 THR CB HB sing N N 465 THR OG1 HG1 sing N N 466 THR CG2 HG21 sing N N 467 THR CG2 HG22 sing N N 468 THR CG2 HG23 sing N N 469 THR OXT HXT sing N N 470 TRP N CA sing N N 471 TRP N H sing N N 472 TRP N H2 sing N N 473 TRP CA C sing N N 474 TRP CA CB sing N N 475 TRP CA HA sing N N 476 TRP C O doub N N 477 TRP C OXT sing N N 478 TRP CB CG sing N N 479 TRP CB HB2 sing N N 480 TRP CB HB3 sing N N 481 TRP CG CD1 doub Y N 482 TRP CG CD2 sing Y N 483 TRP CD1 NE1 sing Y N 484 TRP CD1 HD1 sing N N 485 TRP CD2 CE2 doub Y N 486 TRP CD2 CE3 sing Y N 487 TRP NE1 CE2 sing Y N 488 TRP NE1 HE1 sing N N 489 TRP CE2 CZ2 sing Y N 490 TRP CE3 CZ3 doub Y N 491 TRP CE3 HE3 sing N N 492 TRP CZ2 CH2 doub Y N 493 TRP CZ2 HZ2 sing N N 494 TRP CZ3 CH2 sing Y N 495 TRP CZ3 HZ3 sing N N 496 TRP CH2 HH2 sing N N 497 TRP OXT HXT sing N N 498 TYR N CA sing N N 499 TYR N H sing N N 500 TYR N H2 sing N N 501 TYR CA C sing N N 502 TYR CA CB sing N N 503 TYR CA HA sing N N 504 TYR C O doub N N 505 TYR C OXT sing N N 506 TYR CB CG sing N N 507 TYR CB HB2 sing N N 508 TYR CB HB3 sing N N 509 TYR CG CD1 doub Y N 510 TYR CG CD2 sing Y N 511 TYR CD1 CE1 sing Y N 512 TYR CD1 HD1 sing N N 513 TYR CD2 CE2 doub Y N 514 TYR CD2 HD2 sing N N 515 TYR CE1 CZ doub Y N 516 TYR CE1 HE1 sing N N 517 TYR CE2 CZ sing Y N 518 TYR CE2 HE2 sing N N 519 TYR CZ OH sing N N 520 TYR OH HH sing N N 521 TYR OXT HXT sing N N 522 VAL N CA sing N N 523 VAL N H sing N N 524 VAL N H2 sing N N 525 VAL CA C sing N N 526 VAL CA CB sing N N 527 VAL CA HA sing N N 528 VAL C O doub N N 529 VAL C OXT sing N N 530 VAL CB CG1 sing N N 531 VAL CB CG2 sing N N 532 VAL CB HB sing N N 533 VAL CG1 HG11 sing N N 534 VAL CG1 HG12 sing N N 535 VAL CG1 HG13 sing N N 536 VAL CG2 HG21 sing N N 537 VAL CG2 HG22 sing N N 538 VAL CG2 HG23 sing N N 539 VAL OXT HXT sing N N 540 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9QGX 'double helix' 9QGX 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 10 1_555 -0.183 -0.062 0.026 -3.637 -17.825 5.326 1 B_DC1:DG-1_C B 1 ? C -1 ? 19 1 1 B DC 2 1_555 C DG 9 1_555 -0.086 -0.014 0.421 -4.557 -14.346 2.241 2 B_DC2:DG-2_C B 2 ? C -2 ? 19 1 1 B DA 3 1_555 C DT 8 1_555 -0.281 -0.120 0.699 6.941 -9.791 0.390 3 B_DA3:DT-3_C B 3 ? C -3 ? 20 1 1 B DG 4 1_555 C DC 7 1_555 0.769 0.066 0.604 12.378 -9.548 7.222 4 B_DG4:DC-4_C B 4 ? C -4 ? 19 1 1 B DG 5 1_555 C DC 6 1_555 -0.403 -0.048 0.658 4.633 -17.025 -2.021 5 B_DG5:DC-5_C B 5 ? C -5 ? 19 1 1 B DC 6 1_555 C DG 5 1_555 0.540 0.024 0.182 -5.366 -15.873 2.436 6 B_DC6:DG-6_C B 6 ? C -6 ? 19 1 1 B DG 7 1_555 C DC 4 1_555 -0.993 0.095 0.289 -4.538 -7.765 12.498 7 B_DG7:DC-7_C B 7 ? C -7 ? 19 1 1 B DC 8 1_555 C DG 3 1_555 0.671 0.319 -0.248 11.427 -6.139 11.773 8 B_DC8:DG-8_C B 8 ? C -8 ? 19 1 1 B DA 9 1_555 C DT 2 1_555 0.036 0.205 0.583 13.642 -16.243 0.352 9 B_DA9:DT-9_C B 9 ? C -9 ? 20 1 1 B DG 10 1_555 C DC 1 1_555 0.642 0.066 0.722 14.517 -24.459 -1.589 10 B_DG10:DC-10_C B 10 ? C -10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 10 1_555 B DC 2 1_555 C DG 9 1_555 -0.305 0.344 3.408 -4.823 5.595 34.558 -0.307 -0.252 3.430 9.286 8.006 35.315 1 BB_DC1DC2:DG-2DG-1_CC B 1 ? C -1 ? B 2 ? C -2 ? 1 B DC 2 1_555 C DG 9 1_555 B DA 3 1_555 C DT 8 1_555 -0.156 1.339 3.154 -2.100 -7.184 41.045 2.587 0.013 2.894 -10.144 2.966 41.693 2 BB_DC2DA3:DT-3DG-2_CC B 2 ? C -2 ? B 3 ? C -3 ? 1 B DA 3 1_555 C DT 8 1_555 B DG 4 1_555 C DC 7 1_555 0.520 -0.021 3.178 1.699 5.413 34.304 -0.841 -0.618 3.160 9.099 -2.857 34.756 3 BB_DA3DG4:DC-4DT-3_CC B 3 ? C -3 ? B 4 ? C -4 ? 1 B DG 4 1_555 C DC 7 1_555 B DG 5 1_555 C DC 6 1_555 -0.954 0.548 3.458 -1.211 -7.307 36.572 1.869 1.324 3.320 -11.499 1.905 37.290 4 BB_DG4DG5:DC-5DC-4_CC B 4 ? C -4 ? B 5 ? C -5 ? 1 B DG 5 1_555 C DC 6 1_555 B DC 6 1_555 C DG 5 1_555 0.913 -0.161 3.463 5.428 3.238 40.033 -0.622 -0.666 3.529 4.695 -7.870 40.509 5 BB_DG5DC6:DG-6DC-5_CC B 5 ? C -5 ? B 6 ? C -6 ? 1 B DC 6 1_555 C DG 5 1_555 B DG 7 1_555 C DC 4 1_555 0.966 0.484 3.129 2.890 4.290 32.097 0.129 -1.230 3.237 7.697 -5.185 32.500 6 BB_DC6DG7:DC-7DG-6_CC B 6 ? C -6 ? B 7 ? C -7 ? 1 B DG 7 1_555 C DC 4 1_555 B DC 8 1_555 C DG 3 1_555 0.103 0.559 2.911 4.400 4.039 32.781 0.367 0.482 2.946 7.083 -7.717 33.306 7 BB_DG7DC8:DG-8DC-7_CC B 7 ? C -7 ? B 8 ? C -8 ? 1 B DC 8 1_555 C DG 3 1_555 B DA 9 1_555 C DT 2 1_555 -1.155 1.212 3.442 -4.414 -1.746 39.033 2.022 1.158 3.492 -2.601 6.576 39.309 8 BB_DC8DA9:DT-9DG-8_CC B 8 ? C -8 ? B 9 ? C -9 ? 1 B DA 9 1_555 C DT 2 1_555 B DG 10 1_555 C DC 1 1_555 0.657 -0.268 3.235 -2.250 8.589 37.950 -1.418 -1.251 3.062 12.991 3.404 38.938 9 BB_DA9DG10:DC-10DT-9_CC B 9 ? C -9 ? B 10 ? C -10 ? # _pdbx_audit_support.funding_organization 'Leverhulme Trust' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number RPG-2020-073 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.IT_number 4 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 9QGX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.030189 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003507 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013865 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024960 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? ZN ? ? 24.64596 5.25405 ? ? 2.14387 29.76375 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #