HEADER TRANSCRIPTION 26-MAR-25 9QOV TITLE CRYSTAL STRUCTURE OF [2FE-2S]B D4A-FNR OF A. FISCHERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FNR TYPE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSCRIPTIONAL REGULATOR FNR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIIVIBRIO FISCHERI; SOURCE 3 ORGANISM_TAXID: 668; SOURCE 4 GENE: FNR, AFI02NITE_10170, GNP77_02800, GNP88_12135; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GENE REGULATION, IRON-SULFUR CLUSTER, OXYGEN SENSOR, LABILE DIMER, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS,R.ROHAC REVDAT 1 08-APR-26 9QOV 0 JRNL AUTH A.VOLBEDA,J.C.FONTECILLA-CAMPS,R.ROHAC,E.DE ROSNY, JRNL AUTH 2 C.DARNAULT,P.AMARA,F.CHENAVIER JRNL TITL CRYSTAL STRUCTURE OF [2FE-2S]B D4A-FNR OF A. FISCHERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.C.CRACK,P.AMARA,E.DE ROSNY,C.DARNAULT,M.R.STAPLETON, REMARK 1 AUTH 2 J.GREEN,A.VOLBEDA,J.FONTECILLA-CAMPS,N.LE BRUN REMARK 1 TITL PROBING THE REACTIVITY OF [4FE-4S] FUMARATE AND NITRATE REMARK 1 TITL 2 REDUCTION (FNR) REGULATOR WITH O2 AND NO: INCREASED O2 REMARK 1 TITL 3 RESISTANCE AND RELATIVE SPECIFICITY FOR NO OF THE [4FE-4S] REMARK 1 TITL 4 L28H FNR CLUSTER REMARK 1 REF INORGANICS V.(12) 450 2023 REMARK 1 REFN ESSN 2304-6740 REMARK 1 DOI 10.3390/INORGANICS11120450 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.VOLBEDA,Y.NICOLET,J.FONTECILLA-CAMPS REMARK 1 TITL FUMARATE AND NITRATE REDUCTION REGULATOR (FNR) REMARK 1 REF ENCYCLOPEDIA OF INORGANIC 2017 REMARK 1 REF 2 AND BIOINORGANIC CHEMISTRY REMARK 1 DOI 10.1002/9781119951438.EIBC2504 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.VOLBEDA,C.DARNAULT,O.RENOUX,Y.NICOLET,J.FONTECILLA-CAMPS REMARK 1 TITL THE CRYSTAL STRUCTURE OF THE GLOBAL ANAEROBIC REMARK 1 TITL 2 TRANSCRIPTIONAL REGULATOR FNR EXPLAINS ITS EXTREMELY REMARK 1 TITL 3 FINE-TUNED MONOMER-DIMER EQUILIBRIUM REMARK 1 REF SCI ADV 2015 REMARK 1 REFN ESSN 2375-2548 REMARK 1 PMID 26665177 REMARK 1 DOI 10.1126/SCIADV.1501086 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.550 REMARK 3 FREE R VALUE TEST SET COUNT : 702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7500 - 3.8300 1.00 3125 133 0.1719 0.1861 REMARK 3 2 3.8300 - 3.0400 1.00 2938 147 0.1988 0.2011 REMARK 3 3 3.0400 - 2.6600 1.00 2925 122 0.2278 0.2568 REMARK 3 4 2.6600 - 2.4100 1.00 2866 152 0.2815 0.3152 REMARK 3 5 2.4100 - 2.2400 1.00 2863 148 0.3880 0.3928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.381 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1680 REMARK 3 ANGLE : 0.952 2262 REMARK 3 CHIRALITY : 0.049 258 REMARK 3 PLANARITY : 0.008 289 REMARK 3 DIHEDRAL : 17.901 640 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7567 -13.5333 -26.8047 REMARK 3 T TENSOR REMARK 3 T11: 0.7742 T22: 1.0404 REMARK 3 T33: 0.9650 T12: 0.0722 REMARK 3 T13: 0.0749 T23: 0.2999 REMARK 3 L TENSOR REMARK 3 L11: 1.7716 L22: 2.5073 REMARK 3 L33: 3.0797 L12: -1.5470 REMARK 3 L13: -1.1070 L23: 0.1324 REMARK 3 S TENSOR REMARK 3 S11: -0.3590 S12: -0.8414 S13: -1.5920 REMARK 3 S21: 0.4606 S22: 0.1944 S23: 0.2928 REMARK 3 S31: 0.5296 S32: -0.2065 S33: -0.0133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7066 1.2541 -21.2125 REMARK 3 T TENSOR REMARK 3 T11: 0.8045 T22: 1.3676 REMARK 3 T33: 0.8592 T12: 0.0662 REMARK 3 T13: -0.1302 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.1580 L22: 1.7511 REMARK 3 L33: 0.5085 L12: -0.3417 REMARK 3 L13: -0.8487 L23: 0.7138 REMARK 3 S TENSOR REMARK 3 S11: -0.4205 S12: -1.1472 S13: -0.0486 REMARK 3 S21: 0.6823 S22: -0.0464 S23: -0.2092 REMARK 3 S31: -0.1556 S32: -0.0263 S33: -0.0028 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8540 1.7779 -41.4691 REMARK 3 T TENSOR REMARK 3 T11: 0.6049 T22: 0.6690 REMARK 3 T33: 0.5821 T12: 0.0346 REMARK 3 T13: 0.0001 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 9.9227 L22: 7.9835 REMARK 3 L33: 2.9888 L12: 0.4955 REMARK 3 L13: -0.7072 L23: -0.8389 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: 0.1120 S13: 0.2431 REMARK 3 S21: -0.1529 S22: -0.0928 S23: -0.3771 REMARK 3 S31: -0.1524 S32: -0.1762 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9QOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1292146464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15433 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 47.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 29.00 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 7.83500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, HEPES, ANAEROBIC, PH 7.1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.83050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 37.83050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 106.56400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 37.83050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 37.83050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 106.56400 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 37.83050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 37.83050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 106.56400 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 37.83050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 37.83050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 106.56400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 37.83050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.83050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 106.56400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 37.83050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 37.83050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 106.56400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 37.83050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 37.83050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 106.56400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.83050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 37.83050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 106.56400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -75.66100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 TRP A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 PRO A -4 REMARK 465 GLN A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 LYS A 9 REMARK 465 ARG A 10 REMARK 465 ILE A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 CYS A 16 REMARK 465 ALA A 17 REMARK 465 ILE A 18 REMARK 465 HIS A 19 REMARK 465 CYS A 20 REMARK 465 GLN A 21 REMARK 465 ASP A 22 REMARK 465 CYS A 23 REMARK 465 SER A 24 REMARK 465 ILE A 25 REMARK 465 SER A 26 REMARK 465 GLN A 27 REMARK 465 LEU A 28 REMARK 465 CYS A 29 REMARK 465 ILE A 30 REMARK 465 PRO A 31 REMARK 465 PHE A 32 REMARK 465 THR A 33 REMARK 465 LEU A 34 REMARK 465 ASN A 35 REMARK 465 ASP A 36 REMARK 465 SER A 37 REMARK 465 GLU A 38 REMARK 465 LEU A 39 REMARK 465 ASP A 40 REMARK 465 GLN A 41 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 ASP A 43 CG OD1 OD2 REMARK 470 GLU A 44 CD OE1 OE2 REMARK 470 ILE A 45 CG1 CG2 CD1 REMARK 470 ILE A 46 CG1 CG2 CD1 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 49 CE NZ REMARK 470 ARG A 184 CD NE CZ NH1 NH2 REMARK 470 LYS A 250 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 45 -71.54 -64.80 REMARK 500 ALA A 107 18.66 56.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 122 SG REMARK 620 2 FES A 302 S1 88.3 REMARK 620 3 FES A 302 S2 125.7 103.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 150 OE2 REMARK 620 2 ASP A 154 OD1 125.1 REMARK 620 3 ASP A 154 OD2 128.9 48.4 REMARK 620 4 GLN A 155 OE1 110.6 50.9 18.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QTO RELATED DB: PDB DBREF 9QOV A 3 250 UNP Q70ET4 Q70ET4_ALIFS 3 250 SEQADV 9QOV MET A -8 UNP Q70ET4 INITIATING METHIONINE SEQADV 9QOV TRP A -7 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV SER A -6 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV HIS A -5 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV PRO A -4 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV GLN A -3 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV PHE A -2 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV GLU A -1 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV LYS A 0 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV ALA A 1 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV SER A 2 UNP Q70ET4 EXPRESSION TAG SEQADV 9QOV ALA A 4 UNP Q70ET4 ASP 4 ENGINEERED MUTATION SEQRES 1 A 259 MET TRP SER HIS PRO GLN PHE GLU LYS ALA SER SER ALA SEQRES 2 A 259 ASN SER ALA ASN LYS ARG ILE GLN SER GLY GLY CYS ALA SEQRES 3 A 259 ILE HIS CYS GLN ASP CYS SER ILE SER GLN LEU CYS ILE SEQRES 4 A 259 PRO PHE THR LEU ASN ASP SER GLU LEU ASP GLN LEU ASP SEQRES 5 A 259 GLU ILE ILE GLU ARG LYS LYS PRO ILE GLN LYS GLY GLN SEQRES 6 A 259 GLU LEU PHE LYS ALA GLY ASP GLU LEU LYS CYS LEU TYR SEQRES 7 A 259 ALA ILE ARG SER GLY THR ILE LYS SER TYR THR ILE THR SEQRES 8 A 259 GLU GLN GLY ASP GLU GLN ILE THR ALA PHE HIS LEU ALA SEQRES 9 A 259 GLY ASP LEU VAL GLY PHE ASP ALA ILE THR GLU ALA GLN SEQRES 10 A 259 HIS PRO SER PHE ALA GLN ALA LEU GLU THR SER MET VAL SEQRES 11 A 259 CYS GLU ILE PRO TYR GLU ILE LEU ASP ASP LEU SER GLY SEQRES 12 A 259 LYS MET PRO LYS LEU ARG GLN GLN ILE MET ARG LEU MET SEQRES 13 A 259 SER ASN GLU ILE LYS GLY ASP GLN GLU MET ILE LEU LEU SEQRES 14 A 259 LEU SER LYS LYS ASN ALA GLU GLU ARG LEU ALA ALA PHE SEQRES 15 A 259 LEU TYR ASN LEU SER THR ARG PHE HIS GLN ARG GLY PHE SEQRES 16 A 259 SER PRO ARG GLU PHE ARG LEU THR MET THR ARG GLY ASP SEQRES 17 A 259 ILE GLY ASN TYR LEU GLY LEU THR VAL GLU THR ILE SER SEQRES 18 A 259 ARG LEU LEU GLY ARG PHE GLN LYS THR GLU MET LEU THR SEQRES 19 A 259 VAL LYS GLY LYS TYR ILE THR ILE ASN ASP HIS ASP ALA SEQRES 20 A 259 LEU ALA GLU LEU ALA GLY SER ALA LYS GLU ILE LYS HET NA A 301 1 HET FES A 302 4 HET MPD A 303 8 HET MPD A 304 8 HETNAM NA SODIUM ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 NA NA 1+ FORMUL 3 FES FE2 S2 FORMUL 4 MPD 2(C6 H14 O2) FORMUL 6 HOH *50(H2 O) HELIX 1 AA1 LEU A 42 GLU A 47 1 6 HELIX 2 AA2 GLY A 100 ALA A 107 5 8 HELIX 3 AA3 TYR A 126 GLY A 134 1 9 HELIX 4 AA4 MET A 136 LYS A 164 1 29 HELIX 5 AA5 ASN A 165 ARG A 184 1 20 HELIX 6 AA6 THR A 196 GLY A 205 1 10 HELIX 7 AA7 THR A 207 THR A 221 1 15 HELIX 8 AA8 ASP A 235 GLY A 244 1 10 SHEET 1 AA1 4 LYS A 50 ILE A 52 0 SHEET 2 AA1 4 SER A 119 PRO A 125 -1 O SER A 119 N ILE A 52 SHEET 3 AA1 4 CYS A 67 SER A 73 -1 N ALA A 70 O CYS A 122 SHEET 4 AA1 4 LEU A 98 VAL A 99 -1 O VAL A 99 N TYR A 69 SHEET 1 AA2 4 GLU A 57 PHE A 59 0 SHEET 2 AA2 4 PHE A 112 ALA A 115 -1 O ALA A 113 N PHE A 59 SHEET 3 AA2 4 ILE A 76 ILE A 81 -1 N TYR A 79 O PHE A 112 SHEET 4 AA2 4 GLU A 87 HIS A 93 -1 O THR A 90 N SER A 78 SHEET 1 AA3 3 GLU A 190 ARG A 192 0 SHEET 2 AA3 3 TYR A 230 ILE A 233 -1 O ILE A 231 N PHE A 191 SHEET 3 AA3 3 LEU A 224 LYS A 227 -1 N THR A 225 O THR A 232 LINK SG BCYS A 122 FE2 BFES A 302 1555 1555 2.30 LINK OE2 GLU A 150 NA NA A 301 1555 1555 2.69 LINK OD1 ASP A 154 NA NA A 301 1555 1555 2.84 LINK OD2 ASP A 154 NA NA A 301 1555 1555 2.41 LINK OE1 GLN A 155 NA NA A 301 1555 2455 2.56 CRYST1 75.661 75.661 213.128 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004692 0.00000 CONECT 603 1641 CONECT 834 1639 CONECT 862 1639 CONECT 863 1639 CONECT 1639 834 862 863 CONECT 1640 1642 1643 CONECT 1641 603 1642 1643 CONECT 1642 1640 1641 CONECT 1643 1640 1641 CONECT 1644 1645 CONECT 1645 1644 1646 1647 1648 CONECT 1646 1645 CONECT 1647 1645 CONECT 1648 1645 1649 CONECT 1649 1648 1650 1651 CONECT 1650 1649 CONECT 1651 1649 CONECT 1652 1653 CONECT 1653 1652 1654 1655 1656 CONECT 1654 1653 CONECT 1655 1653 CONECT 1656 1653 1657 CONECT 1657 1656 1658 1659 CONECT 1658 1657 CONECT 1659 1657 MASTER 429 0 4 8 11 0 0 6 1695 1 25 20 END