HEADER OXIDOREDUCTASE 04-APR-25 9QS1 TITLE TETRAPODAL ANCESTOR OF L-AMINO ACID OXIDASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRAPODAL ANCESTOR OF L-AMINO ACIS OXIDASES; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRAPODA; SOURCE 3 ORGANISM_TAXID: 32523; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TRYPTOPHAN, METABOLIC SIGNALING, OXIDATION, FAD, SNAKE VENOM, KEYWDS 2 IMMUNOMETABOLISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MASSARI,A.MATTEVI REVDAT 1 15-APR-26 9QS1 0 JRNL AUTH M.MASSARI,A.MATTEVI JRNL TITL EVOLUTION OF HUMAN IL4I1 PREFERENCE FOR AROMATIC AMINO ACIDS JRNL TITL 2 FROM A BROAD-SPECIFICITY L-AMINO ACID OXIDASE ANCESTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1582 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2082 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.4240 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.291 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4045 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3776 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5481 ; 1.466 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8695 ; 0.495 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 6.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ;13.949 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 691 ;16.427 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4715 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 972 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1936 ; 4.631 ; 5.442 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1936 ; 4.631 ; 5.441 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2420 ; 6.554 ; 9.785 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2421 ; 6.554 ; 9.785 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2109 ; 6.459 ; 6.080 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2103 ; 6.439 ; 6.077 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3059 ; 9.489 ;10.831 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 17244 ;12.005 ;67.180 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 17221 ;12.008 ;67.120 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9QS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292146891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96546 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30578 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 190.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 2.00900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN 50 MM HEPES (PH 7.4), 500 MM NACL, REMARK 280 AND 10% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.03100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.25750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.25750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.54650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.25750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.25750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.51550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.25750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.25750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 142.54650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.25750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.25750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.51550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.03100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 656 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 233 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 412 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 195 65.52 39.52 REMARK 500 ASN A 229 132.13 -175.88 REMARK 500 ARG A 355 -64.94 73.93 REMARK 500 SER A 378 -135.74 52.55 REMARK 500 TYR A 440 -6.52 83.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 91 0.08 SIDE CHAIN REMARK 500 ARG A 198 0.11 SIDE CHAIN REMARK 500 ARG A 233 0.24 SIDE CHAIN REMARK 500 ARG A 264 0.13 SIDE CHAIN REMARK 500 ARG A 352 0.11 SIDE CHAIN REMARK 500 ARG A 412 0.12 SIDE CHAIN REMARK 500 ARG A 482 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9QS1 A 1 488 PDB 9QS1 9QS1 1 488 SEQRES 1 A 488 MET GLU SER SER ASP ASP PRO LEU ASP LYS CYS PHE GLN SEQRES 2 A 488 ASP PRO ASP TYR GLU GLU LEU LEU GLU ILE ALA LYS HIS SEQRES 3 A 488 GLY LEU ARG LYS THR THR LYS PRO LYS ARG VAL VAL ILE SEQRES 4 A 488 VAL GLY ALA GLY ILE ALA GLY LEU THR ALA ALA LYS VAL SEQRES 5 A 488 LEU GLU ASP ALA GLY HIS LYS VAL THR ILE LEU GLU ALA SEQRES 6 A 488 SER ASP ARG VAL GLY GLY ARG VAL LEU THR TYR ARG ASN SEQRES 7 A 488 GLU SER GLU GLY TRP TYR ALA GLU LEU GLY ALA MET ARG SEQRES 8 A 488 ILE PRO SER PHE HIS ARG ILE VAL HIS THR PHE ILE LYS SEQRES 9 A 488 LYS LEU GLY LEU LYS LEU ASN GLU PHE ILE GLN TYR ASP SEQRES 10 A 488 ILE ASN THR TRP TYR PHE VAL ASN GLY VAL ARG LYS ARG SEQRES 11 A 488 THR TYR ALA VAL LYS ASP ASN PRO ASP VAL LEU ASN TYR SEQRES 12 A 488 PRO VAL ARG PRO SER GLU LYS GLY LYS SER ALA ASP GLN SEQRES 13 A 488 LEU TYR GLN GLU ALA LEU GLN LYS VAL LEU GLU ASP LEU SEQRES 14 A 488 LYS ARG SER GLY CYS LYS LYS VAL LEU LYS LYS TYR ASP SEQRES 15 A 488 SER TYR SER VAL LYS GLU TYR LEU ILE LYS GLU GLY ASN SEQRES 16 A 488 LEU SER ARG GLY ALA VAL ARG MET ILE GLY ASP LEU LEU SEQRES 17 A 488 ASN GLU ASP SER PHE PHE TYR ILE SER PHE THR GLU SER SEQRES 18 A 488 LEU ARG ILE GLN SER ASP ILE ASN ASP ASN VAL ARG TYR SEQRES 19 A 488 TYR GLU ILE THR GLY GLY PHE ASP ASN LEU PRO ARG ALA SEQRES 20 A 488 PHE TYR GLN SER LEU SER GLY PRO VAL HIS LEU ASN SER SEQRES 21 A 488 ARG VAL VAL ARG ILE ASN GLN ASN LYS ARG GLY VAL THR SEQRES 22 A 488 VAL PHE TYR ARG ASP GLN GLN GLU SER SER LEU SER ASN SEQRES 23 A 488 ILE THR ALA ASP TYR VAL LEU LEU THR THR THR ALA LYS SEQRES 24 A 488 ALA THR ARG LEU ILE ASP PHE GLN PRO PRO LEU SER PRO SEQRES 25 A 488 LYS LYS THR HIS ALA LEU ARG SER VAL HIS TYR SER SER SEQRES 26 A 488 SER THR LYS ILE PHE LEU SER PHE ARG GLN ARG PHE TRP SEQRES 27 A 488 GLU LYS GLU GLY ILE HIS GLY GLY LYS SER ILE THR ASP SEQRES 28 A 488 ARG PRO SER ARG PHE ILE TYR TYR PRO SER HIS SER PHE SEQRES 29 A 488 PRO SER SER GLY GLY VAL LEU LEU ALA SER TYR THR TRP SEQRES 30 A 488 SER ASP ASP SER ASP PHE PHE LEU GLY LEU SER ASP GLU SEQRES 31 A 488 GLU CYS MET GLN VAL ALA LEU ASP ASP LEU ALA LYS ILE SEQRES 32 A 488 HIS GLY LEU PRO LYS GLU GLN ILE ARG SER LEU TRP ASP SEQRES 33 A 488 GLY THR GLY VAL VAL LYS LYS TRP SER LEU ASP PRO TYR SEQRES 34 A 488 SER LEU GLY ALA PHE ALA ALA PHE THR PRO TYR GLN LEU SEQRES 35 A 488 THR ASP TYR ALA LYS GLU LEU PHE GLN SER GLU GLY ARG SEQRES 36 A 488 VAL HIS PHE ALA GLY GLU HIS THR ALA LEU PRO HIS GLY SEQRES 37 A 488 TRP ILE GLU THR SER MET LYS SER ALA LEU ARG ALA ALA SEQRES 38 A 488 ARG ASN ILE HIS ASN ALA ALA HET FAD A 501 53 HET NO3 A 502 4 HET NA A 503 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NO3 NITRATE ION HETNAM NA SODIUM ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NO3 N O3 1- FORMUL 4 NA NA 1+ FORMUL 5 HOH *61(H2 O) HELIX 1 AA1 ASP A 6 GLN A 13 1 8 HELIX 2 AA2 ASP A 16 GLY A 27 1 12 HELIX 3 AA3 GLY A 43 ALA A 56 1 14 HELIX 4 AA4 HIS A 96 LEU A 106 1 11 HELIX 5 AA5 THR A 131 ASN A 137 1 7 HELIX 6 AA6 PRO A 138 ASN A 142 5 5 HELIX 7 AA7 ARG A 146 LYS A 150 5 5 HELIX 8 AA8 SER A 153 LEU A 162 1 10 HELIX 9 AA9 LEU A 162 GLY A 173 1 12 HELIX 10 AB1 GLY A 173 ASP A 182 1 10 HELIX 11 AB2 SER A 185 GLU A 193 1 9 HELIX 12 AB3 SER A 197 LEU A 208 1 12 HELIX 13 AB4 GLU A 210 PHE A 214 5 5 HELIX 14 AB5 SER A 217 SER A 226 1 10 HELIX 15 AB6 ASP A 242 SER A 251 1 10 HELIX 16 AB7 THR A 297 LEU A 303 1 7 HELIX 17 AB8 SER A 311 VAL A 321 1 11 HELIX 18 AB9 TRP A 338 GLY A 342 5 5 HELIX 19 AC1 SER A 378 PHE A 383 1 6 HELIX 20 AC2 SER A 388 GLY A 405 1 18 HELIX 21 AC3 PRO A 407 LEU A 414 1 8 HELIX 22 AC4 SER A 425 ASP A 427 5 3 HELIX 23 AC5 TYR A 440 GLN A 451 1 12 HELIX 24 AC6 GLY A 460 ALA A 464 5 5 HELIX 25 AC7 TRP A 469 ALA A 487 1 19 SHEET 1 AA1 5 VAL A 256 HIS A 257 0 SHEET 2 AA1 5 LYS A 59 LEU A 63 1 N ILE A 62 O HIS A 257 SHEET 3 AA1 5 ARG A 36 VAL A 40 1 N VAL A 37 O LYS A 59 SHEET 4 AA1 5 TYR A 291 LEU A 294 1 O LEU A 293 N VAL A 40 SHEET 5 AA1 5 VAL A 456 PHE A 458 1 O HIS A 457 N LEU A 294 SHEET 1 AA2 2 THR A 75 ASN A 78 0 SHEET 2 AA2 2 TRP A 83 GLU A 86 -1 O ALA A 85 N TYR A 76 SHEET 1 AA3 3 ILE A 92 PRO A 93 0 SHEET 2 AA3 3 TYR A 234 ILE A 237 -1 O TYR A 235 N ILE A 92 SHEET 3 AA3 3 LEU A 110 PHE A 113 -1 N PHE A 113 O TYR A 234 SHEET 1 AA4 4 VAL A 127 ARG A 130 0 SHEET 2 AA4 4 TRP A 121 VAL A 124 -1 N TYR A 122 O LYS A 129 SHEET 3 AA4 4 LYS A 347 THR A 350 1 O ILE A 349 N PHE A 123 SHEET 4 AA4 4 PHE A 356 TYR A 358 -1 O ILE A 357 N SER A 348 SHEET 1 AA5 4 SER A 285 ALA A 289 0 SHEET 2 AA5 4 VAL A 272 ASP A 278 -1 N VAL A 272 O ALA A 289 SHEET 3 AA5 4 SER A 260 GLN A 267 -1 N ARG A 264 O PHE A 275 SHEET 4 AA5 4 ASP A 305 GLN A 307 1 O ASP A 305 N ILE A 265 SHEET 1 AA6 2 TYR A 323 SER A 324 0 SHEET 2 AA6 2 PHE A 434 ALA A 435 -1 O PHE A 434 N SER A 324 SHEET 1 AA7 3 GLY A 369 TRP A 377 0 SHEET 2 AA7 3 SER A 326 PHE A 333 -1 N PHE A 333 O GLY A 369 SHEET 3 AA7 3 TRP A 415 LYS A 423 -1 O VAL A 420 N PHE A 330 SSBOND 1 CYS A 11 CYS A 174 1555 1555 2.08 LINK NA NA A 503 O HOH A 622 1555 1555 2.88 CISPEP 1 GLN A 307 PRO A 308 0 -3.68 CISPEP 2 LEU A 465 PRO A 466 0 -5.78 CRYST1 94.515 94.515 190.062 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010580 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005261 0.00000 CONECT 46 1352 CONECT 1352 46 CONECT 3880 3881 3882 3883 3932 CONECT 3881 3880 CONECT 3882 3880 CONECT 3883 3880 3884 CONECT 3884 3883 3885 CONECT 3885 3884 3886 3887 CONECT 3886 3885 3891 CONECT 3887 3885 3888 3889 CONECT 3888 3887 CONECT 3889 3887 3890 3891 CONECT 3890 3889 CONECT 3891 3886 3889 3892 CONECT 3892 3891 3893 3901 CONECT 3893 3892 3894 CONECT 3894 3893 3895 CONECT 3895 3894 3896 3901 CONECT 3896 3895 3897 3898 CONECT 3897 3896 CONECT 3898 3896 3899 CONECT 3899 3898 3900 CONECT 3900 3899 3901 CONECT 3901 3892 3895 3900 CONECT 3902 3903 3919 CONECT 3903 3902 3904 3905 CONECT 3904 3903 CONECT 3905 3903 3906 CONECT 3906 3905 3907 3908 CONECT 3907 3906 CONECT 3908 3906 3909 3919 CONECT 3909 3908 3910 CONECT 3910 3909 3911 3917 CONECT 3911 3910 3912 CONECT 3912 3911 3913 3914 CONECT 3913 3912 CONECT 3914 3912 3915 3916 CONECT 3915 3914 CONECT 3916 3914 3917 CONECT 3917 3910 3916 3918 CONECT 3918 3917 3919 3920 CONECT 3919 3902 3908 3918 CONECT 3920 3918 3921 CONECT 3921 3920 3922 3923 CONECT 3922 3921 CONECT 3923 3921 3924 3925 CONECT 3924 3923 CONECT 3925 3923 3926 3927 CONECT 3926 3925 CONECT 3927 3925 3928 CONECT 3928 3927 3929 CONECT 3929 3928 3930 3931 3932 CONECT 3930 3929 CONECT 3931 3929 CONECT 3932 3880 3929 CONECT 3933 3934 3935 3936 CONECT 3934 3933 CONECT 3935 3933 CONECT 3936 3933 CONECT 3937 3959 CONECT 3959 3937 MASTER 340 0 3 25 23 0 0 6 3997 1 61 38 END