HEADER HYDROLASE 08-APR-25 9QTG TITLE SIMKANIA NEGEVENSIS CE-CLAN VIRULENCE FACTOR SNCE1 IN COMPLEX WITH TITLE 2 HSSUMO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEUBIQUITINASE AND DENEDDYLASE CHLADUB2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: STARTING AMINO ACIDS GPLGS CORRESPOND TO EXPRESSION COMPND 6 TAG, RESIDUES 1 - 39 NOT RESOLVED; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SUMO-1,GAP-MODIFYING PROTEIN 1,GMP1,SMT3 HOMOLOG 3,SENTRIN, COMPND 11 UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1,UBIQUITIN-LIKE PROTEIN SMT3C, COMPND 12 SMT3C,UBIQUITIN-LIKE PROTEIN UBL1; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: AMINO ACIDS 1-19 NOT CLONED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMKANIA NEGEVENSIS Z; SOURCE 3 ORGANISM_TAXID: 331113; SOURCE 4 GENE: CDU2, SNE_A10940; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P.1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS CYSTEINE PROTEASE, CE-CLAN, UBL PROTEASE, DESUMOYLASE, SUMO PATHWAY, KEYWDS 2 VIRULENCE FACTOR, BACTERIAL VIRULENCE, PATHOGENESIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.SCHMOEKER,B.GIRBARDT,G.J.PALM,J.HOPPEN,S.SCHULZE,M.LAMMERS REVDAT 1 08-APR-26 9QTG 0 JRNL AUTH O.SCHMOEKER,B.GIRBARDT,L.M.MAYER,S.SCHULZE,G.J.PALM, JRNL AUTH 2 L.BERNDT,J.HOPPEN,N.KARA,X.SCHOEPS,L.STEIL,K.SCHOKNECHT, JRNL AUTH 3 K.GARZ,R.AL-ABDULLA,S.MOELLER,H.JUNKER,V.BOLL,M.DOERR, JRNL AUTH 4 S.KEMNITZ,K.HOFMANN,U.T.BORNSCHEUER,U.VOELKER,E.KRUEGER, JRNL AUTH 5 V.KOZJAK-PAVLOVIC,M.LAMMERS JRNL TITL SIMKANIA NEGEVENSIS CE-CLAN VIRULENCE FACTOR SNCE1 IN JRNL TITL 2 COMPLEX WITH HSSUMO1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.164 REMARK 3 FREE R VALUE TEST SET COUNT : 2250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.4320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01800 REMARK 3 B22 (A**2) : -0.06800 REMARK 3 B33 (A**2) : -1.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.203 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2434 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2280 ; 0.005 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3275 ; 1.748 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5256 ; 1.442 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 7.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;35.986 ;22.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;14.534 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.469 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2746 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 600 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 448 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 45 ; 0.264 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1176 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.099 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.044 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1121 ; 3.223 ; 2.523 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1119 ; 3.225 ; 2.524 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1397 ; 3.692 ; 3.776 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1397 ; 3.692 ; 3.776 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1313 ; 4.165 ; 2.903 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1314 ; 4.163 ; 2.904 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1877 ; 4.828 ; 4.187 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1878 ; 4.827 ; 4.188 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4714 ; 3.680 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1024 9.8384 -23.8593 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: 0.0201 REMARK 3 T33: 0.0276 T12: 0.0001 REMARK 3 T13: 0.0022 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.1299 L22: 0.2164 REMARK 3 L33: 0.4024 L12: 0.0068 REMARK 3 L13: 0.1344 L23: 0.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0031 S13: -0.0026 REMARK 3 S21: 0.0009 S22: -0.0028 S23: 0.0041 REMARK 3 S31: -0.0137 S32: -0.0031 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 77 REMARK 3 RESIDUE RANGE : B 101 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3435 -2.0087 1.2842 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0258 REMARK 3 T33: 0.0336 T12: 0.0178 REMARK 3 T13: 0.0088 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0143 L22: 0.0213 REMARK 3 L33: 3.4008 L12: -0.0080 REMARK 3 L13: -0.0697 L23: 0.2490 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: -0.0090 S13: 0.0072 REMARK 3 S21: 0.0281 S22: 0.0145 S23: 0.0049 REMARK 3 S31: 0.2954 S32: 0.1055 S33: 0.0084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9QTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-25. REMARK 100 THE DEPOSITION ID IS D_1292146196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SILICON111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 49.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 49.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.04400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 39.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 20% PEG3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.48350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.32550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.08200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.32550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.48350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.08200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 ALA A 11 REMARK 465 ILE A 12 REMARK 465 CYS A 13 REMARK 465 ARG A 14 REMARK 465 TYR A 15 REMARK 465 SER A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 VAL A 20 REMARK 465 GLU A 21 REMARK 465 SER A 22 REMARK 465 ILE A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 GLN A 28 REMARK 465 VAL A 29 REMARK 465 LYS A 30 REMARK 465 ALA A 31 REMARK 465 ILE A 32 REMARK 465 GLU A 33 REMARK 465 PRO A 34 REMARK 465 LYS A 35 REMARK 465 GLY A 36 REMARK 465 GLU A 37 REMARK 465 LYS A 38 REMARK 465 ASP A 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASN A 50 HD1 HIS A 53 1.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR B 57 C THR B 57 O 0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 -164.42 -120.87 REMARK 500 ASN A 121 26.61 -159.65 REMARK 500 ILE A 142 -64.78 77.38 REMARK 500 ASN A 143 38.60 -142.83 REMARK 500 TYR A 186 -12.02 -143.94 REMARK 500 GLN B 10 125.59 -30.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 625 DISTANCE = 5.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 68 OE2 REMARK 620 2 GLU A 149 OE1 74.0 REMARK 620 3 GLU A 149 OE2 75.6 1.9 REMARK 620 4 HOH A 479 O 73.9 5.0 6.3 REMARK 620 5 HOH A 563 O 75.1 3.1 4.0 2.4 REMARK 620 6 HOH A 566 O 78.4 5.4 5.1 4.9 3.4 REMARK 620 7 HOH A 619 O 74.8 6.7 7.8 1.9 3.8 5.0 REMARK 620 N 1 2 3 4 5 6 DBREF 9QTG A 6 242 UNP F8L4W9 F8L4W9_SIMNZ 74 310 DBREF 9QTG B 1 77 UNP P63165 SUMO1_HUMAN 20 96 SEQADV 9QTG GLY A 1 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTG PRO A 2 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTG LEU A 3 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTG GLY A 4 UNP F8L4W9 EXPRESSION TAG SEQADV 9QTG SER A 5 UNP F8L4W9 EXPRESSION TAG SEQRES 1 A 242 GLY PRO LEU GLY SER SER LEU THR SER LYS ALA ILE CYS SEQRES 2 A 242 ARG TYR SER LEU SER SER VAL GLU SER ILE GLN PRO LYS SEQRES 3 A 242 THR GLN VAL LYS ALA ILE GLU PRO LYS GLY GLU LYS ASP SEQRES 4 A 242 ARG PHE LEU ILE ASP GLU ARG ASN TRP LEU ASN ASN GLN SEQRES 5 A 242 HIS LEU GLY LEU TYR SER LEU PHE LEU GLN GLU LYS TYR SEQRES 6 A 242 GLY PRO GLU VAL PHE PHE PRO PHE GLY GLY TRP THR TYR SEQRES 7 A 242 VAL PHE PRO GLY LEU THR ASP ARG PHE PHE LYS GLU ASP SEQRES 8 A 242 SER TYR HIS ILE LEU ASP VAL ARG ALA LYS ARG ILE LYS SEQRES 9 A 242 SER PHE LEU ASP TYR LYS SER ILE THR TYR PRO LEU PHE SEQRES 10 A 242 ILE GLY GLY ASN HIS TRP GLY LEU LEU PHE ILE ASP ARG SEQRES 11 A 242 GLU LYS ARG THR VAL GLU TYR TYR ASP SER LYS ILE ASN SEQRES 12 A 242 TYR GLY ASN TYR GLU GLU GLY LEU GLN GLY ILE LYS ASP SEQRES 13 A 242 VAL ALA ALA LYS PHE THR LYS TYR ASP PRO GLY GLU LYS SEQRES 14 A 242 PRO TYR THR TYR LEU GLU LYS ILE LYS LYS LYS LEU GLN SEQRES 15 A 242 PRO ASP GLY TYR GLN CYS GLY PRO TRP ALA LEU TYR PHE SEQRES 16 A 242 LEU GLU HIS ARG LEU GLU ASN PRO GLU VAL ASP PHE ASN SEQRES 17 A 242 GLN LEU ASP LEU ASN GLU ALA GLN ASN MET ILE ALA LYS SEQRES 18 A 242 TYR ARG PHE ALA VAL ARG ASP LYS LEU LEU GLU LEU GLN SEQRES 19 A 242 LYS ASN GLY ASN THR LEU TYR CYS SEQRES 1 B 77 GLU TYR ILE LYS LEU LYS VAL ILE GLY GLN ASP SER SER SEQRES 2 B 77 GLU ILE HIS PHE LYS VAL LYS MET THR THR HIS LEU LYS SEQRES 3 B 77 LYS LEU LYS GLU SER TYR CME GLN ARG GLN GLY VAL PRO SEQRES 4 B 77 MET ASN SER LEU ARG PHE LEU PHE GLU GLY GLN ARG ILE SEQRES 5 B 77 ALA ASP ASN HIS THR PRO LYS GLU LEU GLY MET GLU GLU SEQRES 6 B 77 GLU ASP VAL ILE GLU VAL TYR GLN GLU GLN THR GLY MODRES 9QTG CME B 33 CYS MODIFIED RESIDUE HET CME B 33 19 HET ACT A 301 7 HET CA A 302 1 HET AYE A 303 10 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION HETNAM AYE PROP-2-EN-1-AMINE HETSYN AYE ALLYLAMINE FORMUL 2 CME C5 H11 N O3 S2 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 CA CA 2+ FORMUL 5 AYE C3 H7 N FORMUL 6 HOH *268(H2 O) HELIX 1 AA1 ASN A 51 GLY A 66 1 16 HELIX 2 AA2 PRO A 81 PHE A 87 5 7 HELIX 3 AA3 SER A 105 TYR A 109 5 5 HELIX 4 AA4 ASN A 146 ASP A 165 1 20 HELIX 5 AA5 GLN A 187 ASN A 202 1 16 HELIX 6 AA6 ASP A 206 LEU A 210 5 5 HELIX 7 AA7 ASN A 213 ASN A 236 1 24 HELIX 8 AA8 GLN B 10 SER B 12 5 3 HELIX 9 AA9 LEU B 25 GLY B 37 1 13 HELIX 10 AB1 THR B 57 GLY B 62 1 6 SHEET 1 AA1 2 LEU A 49 ASN A 50 0 SHEET 2 AA1 2 THR B 76 GLY B 77 -1 O GLY B 77 N LEU A 49 SHEET 1 AA2 5 VAL A 69 PHE A 70 0 SHEET 2 AA2 5 SER A 111 ILE A 118 1 O SER A 111 N PHE A 70 SHEET 3 AA2 5 HIS A 122 ASP A 129 -1 O HIS A 122 N ILE A 118 SHEET 4 AA2 5 THR A 134 TYR A 138 -1 O GLU A 136 N PHE A 127 SHEET 5 AA2 5 THR A 172 GLU A 175 1 O LEU A 174 N TYR A 137 SHEET 1 AA3 5 GLU B 14 LYS B 20 0 SHEET 2 AA3 5 TYR B 2 ILE B 8 -1 N VAL B 7 O ILE B 15 SHEET 3 AA3 5 ASP B 67 TYR B 72 1 O ILE B 69 N ILE B 8 SHEET 4 AA3 5 ARG B 44 PHE B 47 -1 N ARG B 44 O TYR B 72 SHEET 5 AA3 5 GLN B 50 ARG B 51 -1 O GLN B 50 N PHE B 47 LINK SG CYS A 188 C2 AYE A 303 1555 1555 1.73 LINK N1 AYE A 303 C GLY B 77 1555 1555 1.44 LINK C TYR B 32 N CME B 33 1555 1555 1.33 LINK C CME B 33 N GLN B 34 1555 1555 1.33 LINK OE2 GLU A 68 CA CA A 302 1555 1655 2.37 LINK OE1 GLU A 149 CA CA A 302 1555 1555 2.61 LINK OE2 GLU A 149 CA CA A 302 1555 1555 2.66 LINK CA CA A 302 O HOH A 479 1555 1555 2.53 LINK CA CA A 302 O HOH A 563 1555 1455 2.38 LINK CA CA A 302 O HOH A 566 1555 1555 2.39 LINK CA CA A 302 O HOH A 619 1555 1555 2.28 CISPEP 1 PHE A 80 PRO A 81 0 3.50 CRYST1 34.967 56.164 148.651 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006727 0.00000 CONECT 1858 4697 CONECT 1859 4697 CONECT 2512 4698 CONECT 3954 3973 CONECT 3973 3954 3974 3983 CONECT 3974 3973 3975 3981 3984 CONECT 3975 3974 3976 3985 3986 CONECT 3976 3975 3977 CONECT 3977 3976 3978 CONECT 3978 3977 3979 3987 3988 CONECT 3979 3978 3980 3989 3990 CONECT 3980 3979 3991 CONECT 3981 3974 3982 3992 CONECT 3982 3981 CONECT 3983 3973 CONECT 3984 3974 CONECT 3985 3975 CONECT 3986 3975 CONECT 3987 3978 CONECT 3988 3978 CONECT 3989 3979 CONECT 3990 3979 CONECT 3991 3980 CONECT 3992 3981 CONECT 4684 4701 CONECT 4690 4691 4692 4693 CONECT 4691 4690 CONECT 4692 4690 CONECT 4693 4690 4694 4695 4696 CONECT 4694 4693 CONECT 4695 4693 CONECT 4696 4693 CONECT 4697 1858 1859 4786 4873 CONECT 4697 4926 CONECT 4698 2512 4699 4700 CONECT 4699 4698 4702 4703 CONECT 4700 4698 4701 4704 4705 CONECT 4701 4684 4700 4706 4707 CONECT 4702 4699 CONECT 4703 4699 CONECT 4704 4700 CONECT 4705 4700 CONECT 4706 4701 CONECT 4707 4701 CONECT 4786 4697 CONECT 4873 4697 CONECT 4926 4697 MASTER 398 0 4 10 12 0 0 6 2636 2 47 25 END