HEADER GENE REGULATION 09-MAY-25 9R5K TITLE STRUCTURAL CHARACTERISATION OF CHROMATIN REMODELLING INTERMEDIATES TITLE 2 SUPPORTS LINKER DNA DEPENDENT PRODUCT INHIBITION AS A MECHANISM FOR TITLE 3 NUCLEOSOME SPACING. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (162-MER); COMPND 3 CHAIN: I; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (162-MER); COMPND 7 CHAIN: J; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HISTONE H3.2; COMPND 11 CHAIN: A, E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: HISTONE H4; COMPND 15 CHAIN: B, F; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: HISTONE H2A TYPE 1; COMPND 19 CHAIN: C, G; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: HISTONE H2B 1.1; COMPND 23 CHAIN: D, H; COMPND 24 SYNONYM: H2B1.1; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 11 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 12 ORGANISM_TAXID: 8355; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 17 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 18 ORGANISM_TAXID: 8355; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 21 MOL_ID: 5; SOURCE 22 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 23 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 24 ORGANISM_TAXID: 8355; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 27 MOL_ID: 6; SOURCE 28 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 29 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 30 ORGANISM_TAXID: 8355; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS NUCLEOSOME, REMODELLING ENZYME, GENE REGULATION EXPDTA ELECTRON MICROSCOPY AUTHOR R.SUNDARAMOORTHY,A.HUGHES,T.A.OWEN-HUGHES REVDAT 1 28-JAN-26 9R5K 0 JRNL AUTH A.L.HUGHES,R.SUNDARAMOORTHY,T.OWEN-HUGHES JRNL TITL STRUCTURAL CHARACTERISATION OF CHROMATIN REMODELLING JRNL TITL 2 INTERMEDIATES SUPPORTS LINKER DNA DEPENDENT PRODUCT JRNL TITL 3 INHIBITION AS A MECHANISM FOR NUCLEOSOME SPACING. JRNL REF ELIFE V. 14 2025 JRNL REFN ESSN 2050-084X JRNL PMID 41439750 JRNL DOI 10.7554/ELIFE.52513 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, PHENIX, REMARK 3 PHENIX, CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3LZ0 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION REMARK 3 OVERALL ANISOTROPIC B VALUE : 180.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.200 REMARK 3 NUMBER OF PARTICLES : 135000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9R5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1292147509. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NUCLEOSOME-CHD1 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFIED CARRIED OUT IN REMARK 245 CLIMATE CHAMBER WITH 100% REMARK 245 HUMIDITY REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : CHD1 REMODELLER BOUND TO REMARK 245 NUCLEOSOME REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2562 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : 81000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J, A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 PRO A 38 REMARK 465 ALA A 135 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 THR C 10 REMARK 465 ARG C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 LYS C 119 REMARK 465 THR C 120 REMARK 465 GLU C 121 REMARK 465 SER C 122 REMARK 465 ALA C 123 REMARK 465 LYS C 124 REMARK 465 SER C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 SER C 128 REMARK 465 LYS C 129 REMARK 465 MET D -3 REMARK 465 PRO D -2 REMARK 465 GLU D -1 REMARK 465 PRO D 0 REMARK 465 ALA D 1 REMARK 465 LYS D 2 REMARK 465 SER D 3 REMARK 465 ALA D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 LYS D 8 REMARK 465 LYS D 9 REMARK 465 GLY D 10 REMARK 465 SER D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 ALA D 14 REMARK 465 VAL D 15 REMARK 465 THR D 16 REMARK 465 LYS D 17 REMARK 465 THR D 18 REMARK 465 GLN D 19 REMARK 465 LYS D 20 REMARK 465 LYS D 21 REMARK 465 ASP D 22 REMARK 465 GLY D 23 REMARK 465 LYS D 24 REMARK 465 LYS D 25 REMARK 465 ARG D 26 REMARK 465 ARG D 27 REMARK 465 LYS D 122 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 ALA E 135 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 MET G 0 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLN G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 LYS G 9 REMARK 465 THR G 10 REMARK 465 ARG G 11 REMARK 465 ASN G 110 REMARK 465 ILE G 111 REMARK 465 GLN G 112 REMARK 465 SER G 113 REMARK 465 VAL G 114 REMARK 465 LEU G 115 REMARK 465 LEU G 116 REMARK 465 PRO G 117 REMARK 465 LYS G 118 REMARK 465 LYS G 119 REMARK 465 THR G 120 REMARK 465 GLU G 121 REMARK 465 SER G 122 REMARK 465 ALA G 123 REMARK 465 LYS G 124 REMARK 465 SER G 125 REMARK 465 ALA G 126 REMARK 465 LYS G 127 REMARK 465 SER G 128 REMARK 465 LYS G 129 REMARK 465 MET H -3 REMARK 465 PRO H -2 REMARK 465 GLU H -1 REMARK 465 PRO H 0 REMARK 465 ALA H 1 REMARK 465 LYS H 2 REMARK 465 SER H 3 REMARK 465 ALA H 4 REMARK 465 PRO H 5 REMARK 465 ALA H 6 REMARK 465 PRO H 7 REMARK 465 LYS H 8 REMARK 465 LYS H 9 REMARK 465 GLY H 10 REMARK 465 SER H 11 REMARK 465 LYS H 12 REMARK 465 LYS H 13 REMARK 465 ALA H 14 REMARK 465 VAL H 15 REMARK 465 THR H 16 REMARK 465 LYS H 17 REMARK 465 THR H 18 REMARK 465 GLN H 19 REMARK 465 LYS H 20 REMARK 465 LYS H 21 REMARK 465 ASP H 22 REMARK 465 GLY H 23 REMARK 465 LYS H 24 REMARK 465 LYS H 25 REMARK 465 ARG H 26 REMARK 465 ARG H 27 REMARK 465 LYS H 28 REMARK 465 SER H 29 REMARK 465 LYS H 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 110 SG REMARK 470 LYS C 118 CG CD CE NZ REMARK 470 CYS E 110 SG REMARK 470 ARG E 134 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 23 CG CD NE CZ NH1 NH2 REMARK 470 ALA H 121 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC I -89 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC I -77 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC I -75 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC I -73 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DT I -72 OP1 - P - OP2 ANGL. DEV. = -9.9 DEGREES REMARK 500 DG I -49 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC I -48 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG I -37 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG I -34 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC I -21 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG I -19 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT I -16 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG I -11 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG I -7 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT I -6 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC I -2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA I 16 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC I 22 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG I 25 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG I 27 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT I 30 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT I 53 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT I 55 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC I 66 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT I 68 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT I 68 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG I 70 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG J -69 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT J -63 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT J -59 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC J -54 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT J -39 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA J -14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG J -7 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA J 6 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC J 11 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG J 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA J 16 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG J 20 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT J 25 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC J 61 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT J 66 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC J 76 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 41 120.37 -175.52 REMARK 500 LYS C 74 4.68 82.60 REMARK 500 LEU D 98 -75.24 -85.68 REMARK 500 PRO D 100 -172.27 -67.83 REMARK 500 GLU D 102 -69.60 79.14 REMARK 500 LYS F 77 -0.76 64.73 REMARK 500 PHE F 100 35.64 -99.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-53590 RELATED DB: EMDB REMARK 900 STRUCTURAL CHARACTERISATION OF CHROMATIN REMODELLING INTERMEDIATES REMARK 900 SUPPORTS LINKER DNA DEPENDENT PRODUCT INHIBITION AS A MECHANISM FOR REMARK 900 NUCLEOSOME SPACING. DBREF 9R5K I -89 72 PDB 9R5K 9R5K -89 72 DBREF 9R5K J -72 89 PDB 9R5K 9R5K -72 89 DBREF 9R5K A 0 135 UNP P84233 H32_XENLA 1 136 DBREF 9R5K B 0 102 UNP P62799 H4_XENLA 1 103 DBREF 9R5K C 0 129 UNP P06897 H2A1_XENLA 1 130 DBREF 9R5K D -3 122 UNP P02281 H2B11_XENLA 1 126 DBREF 9R5K E 0 135 UNP P84233 H32_XENLA 1 136 DBREF 9R5K F 0 102 UNP P62799 H4_XENLA 1 103 DBREF 9R5K G 0 129 UNP P06897 H2A1_XENLA 1 130 DBREF 9R5K H -3 122 UNP P02281 H2B11_XENLA 1 126 SEQRES 1 I 162 DC DC DT DA DT DA DC DG DC DG DG DG DC SEQRES 2 I 162 DG DC DA DC DT DG DC DA DG DA DA DG DC SEQRES 3 I 162 DT DT DG DG DT DC DC DC DG DG DG DG DC SEQRES 4 I 162 DC DG DC DT DC DA DA DT DT DG DG DT DC SEQRES 5 I 162 DG DT DA DG DG DA DA DG DC DT DC DT DA SEQRES 6 I 162 DG DA DT DC DC DG DC DT DT DA DA DA DC SEQRES 7 I 162 DG DA DA DC DG DT DA DC DG DC DG DC DT SEQRES 8 I 162 DG DT DC DC DC DC DC DG DC DG DT DT DT SEQRES 9 I 162 DT DA DA DC DC DG DC DC DA DA DG DG DG SEQRES 10 I 162 DG DA DT DT DA DC DT DC DC DC DT DA DG SEQRES 11 I 162 DT DC DT DC DC DA DG DG DC DA DC DG DT SEQRES 12 I 162 DG DT DC DA DG DA DT DA DT DA DT DA DC SEQRES 13 I 162 DA DT DC DG DA DT SEQRES 1 J 162 DA DT DC DG DA DT DG DT DA DT DA DT DA SEQRES 2 J 162 DT DC DT DG DA DC DA DC DG DT DG DC DC SEQRES 3 J 162 DT DG DG DA DG DA DC DT DA DG DG DG DA SEQRES 4 J 162 DG DT DA DA DT DC DC DC DC DT DT DG DG SEQRES 5 J 162 DC DG DG DT DT DA DA DA DA DC DG DC DG SEQRES 6 J 162 DG DG DG DG DA DC DA DG DC DG DC DG DT SEQRES 7 J 162 DA DC DG DT DT DC DG DT DT DT DA DA DG SEQRES 8 J 162 DC DG DG DA DT DC DT DA DG DA DG DC DT SEQRES 9 J 162 DT DC DC DT DA DC DG DA DC DC DA DA DT SEQRES 10 J 162 DT DG DA DG DC DG DG DC DC DC DC DG DG SEQRES 11 J 162 DG DA DC DC DA DA DG DC DT DT DC DT DG SEQRES 12 J 162 DC DA DG DT DG DC DG DC DC DC DG DC DG SEQRES 13 J 162 DT DA DT DA DG DG SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 A 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA SEQRES 2 C 130 LYS ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 C 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 C 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 C 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 C 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 C 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP SEQRES 8 C 130 GLU GLU LEU ASN LYS LEU LEU GLY GLY VAL THR ILE ALA SEQRES 9 C 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU SEQRES 10 C 130 PRO LYS LYS THR GLU SER ALA LYS SER ALA LYS SER LYS SEQRES 1 D 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 D 126 GLY SER LYS LYS ALA VAL THR LYS THR GLN LYS LYS ASP SEQRES 3 D 126 GLY LYS LYS ARG ARG LYS SER ARG LYS GLU SER TYR ALA SEQRES 4 D 126 ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 D 126 THR GLY ILE SER SER LYS ALA MET SER ILE MET ASN SER SEQRES 6 D 126 PHE VAL ASN ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 D 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 D 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 D 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 D 126 ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 E 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA SEQRES 2 G 130 LYS ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 G 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 G 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 G 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 G 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 G 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP SEQRES 8 G 130 GLU GLU LEU ASN LYS LEU LEU GLY GLY VAL THR ILE ALA SEQRES 9 G 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU SEQRES 10 G 130 PRO LYS LYS THR GLU SER ALA LYS SER ALA LYS SER LYS SEQRES 1 H 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 H 126 GLY SER LYS LYS ALA VAL THR LYS THR GLN LYS LYS ASP SEQRES 3 H 126 GLY LYS LYS ARG ARG LYS SER ARG LYS GLU SER TYR ALA SEQRES 4 H 126 ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 H 126 THR GLY ILE SER SER LYS ALA MET SER ILE MET ASN SER SEQRES 6 H 126 PHE VAL ASN ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 H 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 H 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 H 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 H 126 ALA VAL THR LYS TYR THR SER ALA LYS HELIX 1 AA1 GLY A 44 SER A 57 1 14 HELIX 2 AA2 ARG A 63 ASP A 77 1 15 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 MET A 120 GLY A 132 1 13 HELIX 5 AA5 THR B 30 GLY B 42 1 13 HELIX 6 AA6 LEU B 49 ALA B 76 1 28 HELIX 7 AA7 THR B 82 GLN B 93 1 12 HELIX 8 AA8 THR C 16 GLY C 22 1 7 HELIX 9 AA9 PRO C 26 GLY C 37 1 12 HELIX 10 AB1 GLY C 46 LYS C 74 1 29 HELIX 11 AB2 ILE C 79 ASP C 90 1 12 HELIX 12 AB3 ASP C 90 LEU C 97 1 8 HELIX 13 AB4 TYR D 34 HIS D 46 1 13 HELIX 14 AB5 SER D 52 ASN D 81 1 30 HELIX 15 AB6 THR D 87 LEU D 98 1 12 HELIX 16 AB7 GLU D 102 SER D 120 1 19 HELIX 17 AB8 VAL E 46 SER E 57 1 12 HELIX 18 AB9 ARG E 63 LYS E 79 1 17 HELIX 19 AC1 GLN E 85 ALA E 114 1 30 HELIX 20 AC2 MET E 120 GLY E 132 1 13 HELIX 21 AC3 ASN F 25 ILE F 29 5 5 HELIX 22 AC4 THR F 30 GLY F 42 1 13 HELIX 23 AC5 LEU F 49 ALA F 76 1 28 HELIX 24 AC6 THR F 82 GLY F 94 1 13 HELIX 25 AC7 THR G 16 GLY G 22 1 7 HELIX 26 AC8 PRO G 26 GLY G 37 1 12 HELIX 27 AC9 GLY G 46 ASN G 73 1 28 HELIX 28 AD1 ILE G 79 ASP G 90 1 12 HELIX 29 AD2 ASP G 90 LEU G 97 1 8 HELIX 30 AD3 TYR H 34 HIS H 46 1 13 HELIX 31 AD4 SER H 52 ASN H 81 1 30 HELIX 32 AD5 THR H 87 LEU H 99 1 13 HELIX 33 AD6 PRO H 100 SER H 120 1 21 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA3 2 THR B 96 TYR B 98 0 SHEET 2 AA3 2 VAL G 100 ILE G 102 1 O THR G 101 N THR B 96 SHEET 1 AA4 2 ARG C 42 VAL C 43 0 SHEET 2 AA4 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 42 SHEET 1 AA5 2 ARG C 77 ILE C 78 0 SHEET 2 AA5 2 GLY D 50 ILE D 51 1 O GLY D 50 N ILE C 78 SHEET 1 AA6 2 THR C 101 ILE C 102 0 SHEET 2 AA6 2 LEU F 97 TYR F 98 1 O TYR F 98 N THR C 101 SHEET 1 AA7 2 ARG E 83 PHE E 84 0 SHEET 2 AA7 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA8 2 THR E 118 ILE E 119 0 SHEET 2 AA8 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA9 2 ARG G 42 VAL G 43 0 SHEET 2 AA9 2 THR H 85 ILE H 86 1 O ILE H 86 N ARG G 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 458 0 0 33 18 0 0 612492 10 0 104 END