data_9R7E # _entry.id 9R7E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9R7E pdb_00009r7e 10.2210/pdb9r7e/pdb WWPDB D_1292147872 ? ? EMDB EMD-53305 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-06-11 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9R7E _pdbx_database_status.recvd_initial_deposition_date 2025-05-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-53305 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email eladarad.ea@gmail.com _pdbx_contact_author.name_first Elad _pdbx_contact_author.name_last Arad _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0802-0079 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shahar, A.' 1 ? 'Zalk, R.' 2 ? 'Arad, E.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 5071 _citation.page_last 5071 _citation.title 'Allosteric amyloid catalysis by coiled coil fibrils.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-60379-z _citation.pdbx_database_id_PubMed 40450012 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kunnath, S.M.' 1 ? primary 'Arad, E.' 2 0000-0002-0802-0079 primary 'Zalk, R.' 3 ? primary 'Kass, I.' 4 0000-0002-5368-937X primary 'Shahar, A.' 5 ? primary 'Batushansky, A.' 6 ? primary 'Rapaport, H.' 7 ? primary 'Jelinek, R.' 8 0000-0002-0336-1384 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn PRO-LYS-PHE-LYS-PHE-LYS-PHE-LYS-PHE-LYS-PHE-LYS-PRO 1723.192 16 ? ? ? ? 2 non-polymer syn 'Nitrocefin - open form' 534.519 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code PKFKFKFKFKFKP _entity_poly.pdbx_seq_one_letter_code_can PKFKFKFKFKFKP _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,L,M,N,O,P,Q,R,S,T _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'Nitrocefin - open form' _pdbx_entity_nonpoly.comp_id NEF # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LYS n 1 3 PHE n 1 4 LYS n 1 5 PHE n 1 6 LYS n 1 7 PHE n 1 8 LYS n 1 9 PHE n 1 10 LYS n 1 11 PHE n 1 12 LYS n 1 13 PRO n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'Anaeramoeba ignava' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1746090 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NEF non-polymer . 'Nitrocefin - open form' ;(2R)-5-[(E)-2-(2,4-dinitrophenyl)ethenyl]-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid ; 'C21 H18 N4 O9 S2' 534.519 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 PHE 3 3 3 PHE PHE B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 LYS 6 6 6 LYS LYS B . n B 1 7 PHE 7 7 7 PHE PHE B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 PHE 9 9 9 PHE PHE B . n B 1 10 LYS 10 10 10 LYS LYS B . n B 1 11 PHE 11 11 11 PHE PHE B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 PRO 13 13 13 PRO PRO B . n C 1 1 PRO 1 1 1 PRO PRO C . n C 1 2 LYS 2 2 2 LYS LYS C . n C 1 3 PHE 3 3 3 PHE PHE C . n C 1 4 LYS 4 4 4 LYS LYS C . n C 1 5 PHE 5 5 5 PHE PHE C . n C 1 6 LYS 6 6 6 LYS LYS C . n C 1 7 PHE 7 7 7 PHE PHE C . n C 1 8 LYS 8 8 8 LYS LYS C . n C 1 9 PHE 9 9 9 PHE PHE C . n C 1 10 LYS 10 10 10 LYS LYS C . n C 1 11 PHE 11 11 11 PHE PHE C . n C 1 12 LYS 12 12 12 LYS LYS C . n C 1 13 PRO 13 13 13 PRO PRO C . n D 1 1 PRO 1 1 1 PRO PRO D . n D 1 2 LYS 2 2 2 LYS LYS D . n D 1 3 PHE 3 3 3 PHE PHE D . n D 1 4 LYS 4 4 4 LYS LYS D . n D 1 5 PHE 5 5 5 PHE PHE D . n D 1 6 LYS 6 6 6 LYS LYS D . n D 1 7 PHE 7 7 7 PHE PHE D . n D 1 8 LYS 8 8 8 LYS LYS D . n D 1 9 PHE 9 9 9 PHE PHE D . n D 1 10 LYS 10 10 10 LYS LYS D . n D 1 11 PHE 11 11 11 PHE PHE D . n D 1 12 LYS 12 12 12 LYS LYS D . n D 1 13 PRO 13 13 13 PRO PRO D . n E 1 1 PRO 1 1 1 PRO PRO E . n E 1 2 LYS 2 2 2 LYS LYS E . n E 1 3 PHE 3 3 3 PHE PHE E . n E 1 4 LYS 4 4 4 LYS LYS E . n E 1 5 PHE 5 5 5 PHE PHE E . n E 1 6 LYS 6 6 6 LYS LYS E . n E 1 7 PHE 7 7 7 PHE PHE E . n E 1 8 LYS 8 8 8 LYS LYS E . n E 1 9 PHE 9 9 9 PHE PHE E . n E 1 10 LYS 10 10 10 LYS LYS E . n E 1 11 PHE 11 11 11 PHE PHE E . n E 1 12 LYS 12 12 12 LYS LYS E . n E 1 13 PRO 13 13 13 PRO PRO E . n F 1 1 PRO 1 1 1 PRO PRO F . n F 1 2 LYS 2 2 2 LYS LYS F . n F 1 3 PHE 3 3 3 PHE PHE F . n F 1 4 LYS 4 4 4 LYS LYS F . n F 1 5 PHE 5 5 5 PHE PHE F . n F 1 6 LYS 6 6 6 LYS LYS F . n F 1 7 PHE 7 7 7 PHE PHE F . n F 1 8 LYS 8 8 8 LYS LYS F . n F 1 9 PHE 9 9 9 PHE PHE F . n F 1 10 LYS 10 10 10 LYS LYS F . n F 1 11 PHE 11 11 11 PHE PHE F . n F 1 12 LYS 12 12 12 LYS LYS F . n F 1 13 PRO 13 13 13 PRO PRO F . n G 1 1 PRO 1 1 1 PRO PRO G . n G 1 2 LYS 2 2 2 LYS LYS G . n G 1 3 PHE 3 3 3 PHE PHE G . n G 1 4 LYS 4 4 4 LYS LYS G . n G 1 5 PHE 5 5 5 PHE PHE G . n G 1 6 LYS 6 6 6 LYS LYS G . n G 1 7 PHE 7 7 7 PHE PHE G . n G 1 8 LYS 8 8 8 LYS LYS G . n G 1 9 PHE 9 9 9 PHE PHE G . n G 1 10 LYS 10 10 10 LYS LYS G . n G 1 11 PHE 11 11 11 PHE PHE G . n G 1 12 LYS 12 12 12 LYS LYS G . n G 1 13 PRO 13 13 13 PRO PRO G . n H 1 1 PRO 1 1 1 PRO PRO L . n H 1 2 LYS 2 2 2 LYS LYS L . n H 1 3 PHE 3 3 3 PHE PHE L . n H 1 4 LYS 4 4 4 LYS LYS L . n H 1 5 PHE 5 5 5 PHE PHE L . n H 1 6 LYS 6 6 6 LYS LYS L . n H 1 7 PHE 7 7 7 PHE PHE L . n H 1 8 LYS 8 8 8 LYS LYS L . n H 1 9 PHE 9 9 9 PHE PHE L . n H 1 10 LYS 10 10 10 LYS LYS L . n H 1 11 PHE 11 11 11 PHE PHE L . n H 1 12 LYS 12 12 12 LYS LYS L . n H 1 13 PRO 13 13 13 PRO PRO L . n I 1 1 PRO 1 1 1 PRO PRO M . n I 1 2 LYS 2 2 2 LYS LYS M . n I 1 3 PHE 3 3 3 PHE PHE M . n I 1 4 LYS 4 4 4 LYS LYS M . n I 1 5 PHE 5 5 5 PHE PHE M . n I 1 6 LYS 6 6 6 LYS LYS M . n I 1 7 PHE 7 7 7 PHE PHE M . n I 1 8 LYS 8 8 8 LYS LYS M . n I 1 9 PHE 9 9 9 PHE PHE M . n I 1 10 LYS 10 10 10 LYS LYS M . n I 1 11 PHE 11 11 11 PHE PHE M . n I 1 12 LYS 12 12 12 LYS LYS M . n I 1 13 PRO 13 13 13 PRO PRO M . n J 1 1 PRO 1 1 1 PRO PRO N . n J 1 2 LYS 2 2 2 LYS LYS N . n J 1 3 PHE 3 3 3 PHE PHE N . n J 1 4 LYS 4 4 4 LYS LYS N . n J 1 5 PHE 5 5 5 PHE PHE N . n J 1 6 LYS 6 6 6 LYS LYS N . n J 1 7 PHE 7 7 7 PHE PHE N . n J 1 8 LYS 8 8 8 LYS LYS N . n J 1 9 PHE 9 9 9 PHE PHE N . n J 1 10 LYS 10 10 10 LYS LYS N . n J 1 11 PHE 11 11 11 PHE PHE N . n J 1 12 LYS 12 12 12 LYS LYS N . n J 1 13 PRO 13 13 13 PRO PRO N . n K 1 1 PRO 1 1 1 PRO PRO O . n K 1 2 LYS 2 2 2 LYS LYS O . n K 1 3 PHE 3 3 3 PHE PHE O . n K 1 4 LYS 4 4 4 LYS LYS O . n K 1 5 PHE 5 5 5 PHE PHE O . n K 1 6 LYS 6 6 6 LYS LYS O . n K 1 7 PHE 7 7 7 PHE PHE O . n K 1 8 LYS 8 8 8 LYS LYS O . n K 1 9 PHE 9 9 9 PHE PHE O . n K 1 10 LYS 10 10 10 LYS LYS O . n K 1 11 PHE 11 11 11 PHE PHE O . n K 1 12 LYS 12 12 12 LYS LYS O . n K 1 13 PRO 13 13 13 PRO PRO O . n L 1 1 PRO 1 1 1 PRO PRO P . n L 1 2 LYS 2 2 2 LYS LYS P . n L 1 3 PHE 3 3 3 PHE PHE P . n L 1 4 LYS 4 4 4 LYS LYS P . n L 1 5 PHE 5 5 5 PHE PHE P . n L 1 6 LYS 6 6 6 LYS LYS P . n L 1 7 PHE 7 7 7 PHE PHE P . n L 1 8 LYS 8 8 8 LYS LYS P . n L 1 9 PHE 9 9 9 PHE PHE P . n L 1 10 LYS 10 10 10 LYS LYS P . n L 1 11 PHE 11 11 11 PHE PHE P . n L 1 12 LYS 12 12 12 LYS LYS P . n L 1 13 PRO 13 13 13 PRO PRO P . n M 1 1 PRO 1 1 1 PRO PRO Q . n M 1 2 LYS 2 2 2 LYS LYS Q . n M 1 3 PHE 3 3 3 PHE PHE Q . n M 1 4 LYS 4 4 4 LYS LYS Q . n M 1 5 PHE 5 5 5 PHE PHE Q . n M 1 6 LYS 6 6 6 LYS LYS Q . n M 1 7 PHE 7 7 7 PHE PHE Q . n M 1 8 LYS 8 8 8 LYS LYS Q . n M 1 9 PHE 9 9 9 PHE PHE Q . n M 1 10 LYS 10 10 10 LYS LYS Q . n M 1 11 PHE 11 11 11 PHE PHE Q . n M 1 12 LYS 12 12 12 LYS LYS Q . n M 1 13 PRO 13 13 13 PRO PRO Q . n N 1 1 PRO 1 1 1 PRO PRO R . n N 1 2 LYS 2 2 2 LYS LYS R . n N 1 3 PHE 3 3 3 PHE PHE R . n N 1 4 LYS 4 4 4 LYS LYS R . n N 1 5 PHE 5 5 5 PHE PHE R . n N 1 6 LYS 6 6 6 LYS LYS R . n N 1 7 PHE 7 7 7 PHE PHE R . n N 1 8 LYS 8 8 8 LYS LYS R . n N 1 9 PHE 9 9 9 PHE PHE R . n N 1 10 LYS 10 10 10 LYS LYS R . n N 1 11 PHE 11 11 11 PHE PHE R . n N 1 12 LYS 12 12 12 LYS LYS R . n N 1 13 PRO 13 13 13 PRO PRO R . n O 1 1 PRO 1 1 1 PRO PRO S . n O 1 2 LYS 2 2 2 LYS LYS S . n O 1 3 PHE 3 3 3 PHE PHE S . n O 1 4 LYS 4 4 4 LYS LYS S . n O 1 5 PHE 5 5 5 PHE PHE S . n O 1 6 LYS 6 6 6 LYS LYS S . n O 1 7 PHE 7 7 7 PHE PHE S . n O 1 8 LYS 8 8 8 LYS LYS S . n O 1 9 PHE 9 9 9 PHE PHE S . n O 1 10 LYS 10 10 10 LYS LYS S . n O 1 11 PHE 11 11 11 PHE PHE S . n O 1 12 LYS 12 12 12 LYS LYS S . n O 1 13 PRO 13 13 13 PRO PRO S . n P 1 1 PRO 1 1 1 PRO PRO T . n P 1 2 LYS 2 2 2 LYS LYS T . n P 1 3 PHE 3 3 3 PHE PHE T . n P 1 4 LYS 4 4 4 LYS LYS T . n P 1 5 PHE 5 5 5 PHE PHE T . n P 1 6 LYS 6 6 6 LYS LYS T . n P 1 7 PHE 7 7 7 PHE PHE T . n P 1 8 LYS 8 8 8 LYS LYS T . n P 1 9 PHE 9 9 9 PHE PHE T . n P 1 10 LYS 10 10 10 LYS LYS T . n P 1 11 PHE 11 11 11 PHE PHE T . n P 1 12 LYS 12 12 12 LYS LYS T . n P 1 13 PRO 13 13 13 PRO PRO T . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NEF _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NEF _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 NEF 1 101 2 NEF NEF B . R 2 NEF 1 101 4 NEF NEF D . S 2 NEF 1 101 3 NEF NEF R . T 2 NEF 1 101 1 NEF NEF S . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9R7E _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9R7E _struct.title 'Cryo-EM Structure of catalytic amyloids' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9R7E _struct_keywords.text 'Allosteric amyloid coiled-coil fibrils, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9R7E _struct_ref.pdbx_db_accession 9R7E _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9R7E A 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 2 1 9R7E B 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 3 1 9R7E C 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 4 1 9R7E D 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 5 1 9R7E E 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 6 1 9R7E F 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 7 1 9R7E G 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 8 1 9R7E L 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 9 1 9R7E M 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 10 1 9R7E N 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 11 1 9R7E O 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 12 1 9R7E P 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 13 1 9R7E Q 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 14 1 9R7E R 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 15 1 9R7E S 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 16 1 9R7E T 1 ? 13 ? 9R7E 1 ? 13 ? 1 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 16-meric _pdbx_struct_assembly.oligomeric_count 16 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 2 ? PHE A 11 ? LYS A 2 PHE A 11 AA1 2 PHE B 3 ? LYS B 12 ? PHE B 3 LYS B 12 AA1 3 PHE C 3 ? PHE C 11 ? PHE C 3 PHE C 11 AA1 4 PHE D 3 ? PHE D 11 ? PHE D 3 PHE D 11 AA2 1 PHE E 3 ? PHE E 11 ? PHE E 3 PHE E 11 AA2 2 LYS G 2 ? PHE G 11 ? LYS G 2 PHE G 11 AA2 3 PHE F 3 ? LYS F 12 ? PHE F 3 LYS F 12 AA2 4 LYS H 4 ? PHE H 11 ? LYS L 4 PHE L 11 AA3 1 LYS I 2 ? PHE I 11 ? LYS M 2 PHE M 11 AA3 2 PHE J 3 ? LYS J 12 ? PHE N 3 LYS N 12 AA3 3 PHE K 3 ? PHE K 11 ? PHE O 3 PHE O 11 AA3 4 PHE L 3 ? PHE L 11 ? PHE P 3 PHE P 11 AA4 1 PHE M 3 ? PHE M 11 ? PHE Q 3 PHE Q 11 AA4 2 PHE O 3 ? LYS O 12 ? PHE S 3 LYS S 12 AA4 3 LYS N 2 ? PHE N 11 ? LYS R 2 PHE R 11 AA4 4 PHE P 3 ? PHE P 11 ? PHE T 3 PHE T 11 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 6 ? N LYS A 6 O LYS B 8 ? O LYS B 8 AA1 2 3 N PHE B 5 ? N PHE B 5 O LYS C 4 ? O LYS C 4 AA1 3 4 N PHE C 5 ? N PHE C 5 O PHE D 9 ? O PHE D 9 AA2 1 2 N PHE E 9 ? N PHE E 9 O PHE G 5 ? O PHE G 5 AA2 2 3 O LYS G 8 ? O LYS G 8 N LYS F 6 ? N LYS F 6 AA2 3 4 N PHE F 3 ? N PHE F 3 O PHE H 11 ? O PHE L 11 AA3 1 2 N LYS I 6 ? N LYS M 6 O LYS J 8 ? O LYS N 8 AA3 2 3 N PHE J 9 ? N PHE N 9 O LYS K 10 ? O LYS O 10 AA3 3 4 N PHE K 5 ? N PHE O 5 O PHE L 9 ? O PHE P 9 AA4 1 2 N PHE M 9 ? N PHE Q 9 O PHE O 5 ? O PHE S 5 AA4 2 3 O LYS O 4 ? O LYS S 4 N LYS N 10 ? N LYS R 10 AA4 3 4 N PHE N 3 ? N PHE R 3 O PHE P 11 ? O PHE T 11 # _pdbx_entry_details.entry_id 9R7E _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A PHE 3 ? ? CD2 A PHE 3 ? ? 1.914 1.383 0.531 0.015 N 2 1 CG A PHE 3 ? ? CD1 A PHE 3 ? ? 1.892 1.383 0.509 0.015 N 3 1 CD1 A PHE 3 ? ? CE1 A PHE 3 ? ? 2.016 1.388 0.628 0.020 N 4 1 CE1 A PHE 3 ? ? CZ A PHE 3 ? ? 2.291 1.369 0.922 0.019 N 5 1 CZ A PHE 3 ? ? CE2 A PHE 3 ? ? 2.230 1.369 0.861 0.019 N 6 1 CE2 A PHE 3 ? ? CD2 A PHE 3 ? ? 2.013 1.388 0.625 0.020 N 7 1 CB B PHE 11 ? ? CG B PHE 11 ? ? 2.255 1.509 0.746 0.017 N 8 1 CG B PHE 11 ? ? CD2 B PHE 11 ? ? 1.506 1.383 0.123 0.015 N 9 1 CG B PHE 11 ? ? CD1 B PHE 11 ? ? 1.503 1.383 0.120 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PHE 9 ? ? CA A PHE 9 ? ? CB A PHE 9 ? ? 99.36 110.60 -11.24 1.80 N 2 1 CA B PHE 11 ? ? CB B PHE 11 ? ? CG B PHE 11 ? ? 147.91 113.90 34.01 2.40 N 3 1 CB B PHE 11 ? ? CG B PHE 11 ? ? CD2 B PHE 11 ? ? 134.40 120.80 13.60 0.70 N 4 1 CD1 B PHE 11 ? ? CG B PHE 11 ? ? CD2 B PHE 11 ? ? 89.24 118.30 -29.06 1.30 N 5 1 CB B PHE 11 ? ? CG B PHE 11 ? ? CD1 B PHE 11 ? ? 136.33 120.80 15.53 0.70 N 6 1 CG B PHE 11 ? ? CD1 B PHE 11 ? ? CE1 B PHE 11 ? ? 137.05 120.80 16.25 1.10 N 7 1 CG B PHE 11 ? ? CD2 B PHE 11 ? ? CE2 B PHE 11 ? ? 137.19 120.80 16.39 1.10 N 8 1 N M PHE 9 ? ? CA M PHE 9 ? ? CB M PHE 9 ? ? 99.13 110.60 -11.47 1.80 N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9R7E _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9R7E _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 507432 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name PFK _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9R7E _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9R7E _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9R7E _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal LYS N N N N 1 LYS CA C N S 2 LYS C C N N 3 LYS O O N N 4 LYS CB C N N 5 LYS CG C N N 6 LYS CD C N N 7 LYS CE C N N 8 LYS NZ N N N 9 LYS OXT O N N 10 LYS H H N N 11 LYS H2 H N N 12 LYS HA H N N 13 LYS HB2 H N N 14 LYS HB3 H N N 15 LYS HG2 H N N 16 LYS HG3 H N N 17 LYS HD2 H N N 18 LYS HD3 H N N 19 LYS HE2 H N N 20 LYS HE3 H N N 21 LYS HZ1 H N N 22 LYS HZ2 H N N 23 LYS HZ3 H N N 24 LYS HXT H N N 25 NEF C2 C N N 26 NEF C3 C N R 27 NEF C4 C N N 28 NEF C6 C N N 29 NEF C7 C N N 30 NEF C8 C Y N 31 NEF C11 C Y N 32 NEF C13 C N R 33 NEF C14 C Y N 34 NEF C15 C N N 35 NEF C16 C N N 36 NEF C17 C Y N 37 NEF S19 S N N 38 NEF C1 C N N 39 NEF O2 O N N 40 NEF N4 N N N 41 NEF C5 C N N 42 NEF O6 O N N 43 NEF C9 C Y N 44 NEF C10 C Y N 45 NEF S12 S Y N 46 NEF N14 N N N 47 NEF O17 O N N 48 NEF O18 O N N 49 NEF C12 C N N 50 NEF C18 C Y N 51 NEF C19 C Y N 52 NEF C20 C Y N 53 NEF C21 C Y N 54 NEF N22 N N N 55 NEF N23 N N N 56 NEF O24 O N N 57 NEF O25 O N N 58 NEF O26 O N N 59 NEF O27 O N N 60 NEF H1 H N N 61 NEF H2 H N N 62 NEF H3 H N N 63 NEF H5 H N N 64 NEF H7 H N N 65 NEF H8 H N N 66 NEF H9 H N N 67 NEF H10 H N N 68 NEF H12 H N N 69 NEF H14 H N N 70 NEF H15 H N N 71 NEF H16 H N N 72 NEF H19 H N N 73 NEF H20 H N N 74 NEF H22 H N N 75 NEF H23 H N N 76 NEF OXY O N N 77 NEF HXY H N N 78 NEF H4 H N N 79 PHE N N N N 80 PHE CA C N S 81 PHE C C N N 82 PHE O O N N 83 PHE CB C N N 84 PHE CG C Y N 85 PHE CD1 C Y N 86 PHE CD2 C Y N 87 PHE CE1 C Y N 88 PHE CE2 C Y N 89 PHE CZ C Y N 90 PHE OXT O N N 91 PHE H H N N 92 PHE H2 H N N 93 PHE HA H N N 94 PHE HB2 H N N 95 PHE HB3 H N N 96 PHE HD1 H N N 97 PHE HD2 H N N 98 PHE HE1 H N N 99 PHE HE2 H N N 100 PHE HZ H N N 101 PHE HXT H N N 102 PRO N N N N 103 PRO CA C N S 104 PRO C C N N 105 PRO O O N N 106 PRO CB C N N 107 PRO CG C N N 108 PRO CD C N N 109 PRO OXT O N N 110 PRO H H N N 111 PRO HA H N N 112 PRO HB2 H N N 113 PRO HB3 H N N 114 PRO HG2 H N N 115 PRO HG3 H N N 116 PRO HD2 H N N 117 PRO HD3 H N N 118 PRO HXT H N N 119 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYS N CA sing N N 1 LYS N H sing N N 2 LYS N H2 sing N N 3 LYS CA C sing N N 4 LYS CA CB sing N N 5 LYS CA HA sing N N 6 LYS C O doub N N 7 LYS C OXT sing N N 8 LYS CB CG sing N N 9 LYS CB HB2 sing N N 10 LYS CB HB3 sing N N 11 LYS CG CD sing N N 12 LYS CG HG2 sing N N 13 LYS CG HG3 sing N N 14 LYS CD CE sing N N 15 LYS CD HD2 sing N N 16 LYS CD HD3 sing N N 17 LYS CE NZ sing N N 18 LYS CE HE2 sing N N 19 LYS CE HE3 sing N N 20 LYS NZ HZ1 sing N N 21 LYS NZ HZ2 sing N N 22 LYS NZ HZ3 sing N N 23 LYS OXT HXT sing N N 24 NEF O26 N23 sing N N 25 NEF N23 O27 doub N N 26 NEF N23 C19 sing N N 27 NEF C18 C19 doub Y N 28 NEF C18 C17 sing Y N 29 NEF C19 C20 sing Y N 30 NEF C17 C14 doub Y N 31 NEF S12 C11 sing Y N 32 NEF S12 C8 sing Y N 33 NEF C11 C10 doub Y N 34 NEF C20 C21 doub Y N 35 NEF C14 C21 sing Y N 36 NEF C14 C12 sing N N 37 NEF C8 C7 sing N N 38 NEF C8 C9 doub Y N 39 NEF C6 C12 doub N E 40 NEF C6 C4 sing N N 41 NEF C7 C5 sing N N 42 NEF O17 C16 doub N N 43 NEF C10 C9 sing Y N 44 NEF C21 N22 sing N N 45 NEF O2 C1 doub N N 46 NEF C4 C15 doub N N 47 NEF C4 C2 sing N N 48 NEF C16 C15 sing N N 49 NEF C16 O18 sing N N 50 NEF N4 C5 sing N N 51 NEF N4 C3 sing N N 52 NEF C15 N14 sing N N 53 NEF C5 O6 doub N N 54 NEF C1 C3 sing N N 55 NEF C2 S19 sing N N 56 NEF N22 O25 doub N N 57 NEF N22 O24 sing N N 58 NEF C3 C13 sing N N 59 NEF N14 C13 sing N N 60 NEF C13 S19 sing N N 61 NEF C2 H1 sing N N 62 NEF C2 H2 sing N N 63 NEF C3 H3 sing N N 64 NEF C6 H5 sing N N 65 NEF C7 H7 sing N N 66 NEF C7 H8 sing N N 67 NEF C11 H9 sing N N 68 NEF C13 H10 sing N N 69 NEF C17 H12 sing N N 70 NEF N4 H14 sing N N 71 NEF C9 H15 sing N N 72 NEF C10 H16 sing N N 73 NEF O18 H19 sing N N 74 NEF C12 H20 sing N N 75 NEF C18 H22 sing N N 76 NEF C20 H23 sing N N 77 NEF C1 OXY sing N N 78 NEF OXY HXY sing N N 79 NEF N14 H4 sing N N 80 PHE N CA sing N N 81 PHE N H sing N N 82 PHE N H2 sing N N 83 PHE CA C sing N N 84 PHE CA CB sing N N 85 PHE CA HA sing N N 86 PHE C O doub N N 87 PHE C OXT sing N N 88 PHE CB CG sing N N 89 PHE CB HB2 sing N N 90 PHE CB HB3 sing N N 91 PHE CG CD1 doub Y N 92 PHE CG CD2 sing Y N 93 PHE CD1 CE1 sing Y N 94 PHE CD1 HD1 sing N N 95 PHE CD2 CE2 doub Y N 96 PHE CD2 HD2 sing N N 97 PHE CE1 CZ doub Y N 98 PHE CE1 HE1 sing N N 99 PHE CE2 CZ sing Y N 100 PHE CE2 HE2 sing N N 101 PHE CZ HZ sing N N 102 PHE OXT HXT sing N N 103 PRO N CA sing N N 104 PRO N CD sing N N 105 PRO N H sing N N 106 PRO CA C sing N N 107 PRO CA CB sing N N 108 PRO CA HA sing N N 109 PRO C O doub N N 110 PRO C OXT sing N N 111 PRO CB CG sing N N 112 PRO CB HB2 sing N N 113 PRO CB HB3 sing N N 114 PRO CG CD sing N N 115 PRO CG HG2 sing N N 116 PRO CG HG3 sing N N 117 PRO CD HD2 sing N N 118 PRO CD HD3 sing N N 119 PRO OXT HXT sing N N 120 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1746090 _em_entity_assembly_naturalsource.organism 'Anaeramoeba ignava' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 1746090 _em_entity_assembly_recombinant.organism 'Anaeramoeba ignava' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -7.353 _em_helical_entity.axial_rise_per_subunit 12 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 30 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 4.6.0 ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country Israel _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9R7E _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #