HEADER HYDROLASE 14-MAY-25 9R7G TITLE CHAP DOMAIN OF PNEUMOCOCCAL ENDOPEPTIDASE PCSB - ACTIVE SITE MUTANT TITLE 2 C292A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN HYDROLASE PCSB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: PCSB, SPD_2043; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PNEUMOCOCCUS, ENDOPEPTIDASE, PEPTIDOGLYCAN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.S.BRIGGS,D.I.ROPER REVDAT 1 27-MAY-26 9R7G 0 JRNL AUTH N.S.BRIGGS,D.I.ROPER JRNL TITL CHAP DOMAIN OF PNEUMOCOCCAL ENDOPEPTIDASE PCSB - ACTIVE SITE JRNL TITL 2 MUTANT C292A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2644 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3407 ; 0.007 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 2932 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4658 ; 1.458 ; 1.745 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6686 ; 0.533 ; 1.706 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.476 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ; 5.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;11.978 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4271 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 897 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 1.563 ; 1.878 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1742 ; 1.561 ; 1.878 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2174 ; 2.260 ; 3.367 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2175 ; 2.260 ; 3.367 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1665 ; 1.857 ; 2.047 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1666 ; 1.856 ; 2.048 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2485 ; 2.759 ; 3.660 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3920 ; 4.195 ;20.840 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3856 ; 4.104 ;20.260 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9R7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1292147868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95371 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62042 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 49.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BICINE (PH 9), 10% W/V PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 443 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 441 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 LYS A 17 REMARK 465 VAL A 18 REMARK 465 ARG A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 ASP A 134 REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 PRO B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 ALA B 16 REMARK 465 LYS B 17 REMARK 465 VAL B 18 REMARK 465 ARG B 19 REMARK 465 PRO B 20 REMARK 465 THR B 21 REMARK 465 TYR B 22 REMARK 465 SER B 23 REMARK 465 THR B 24 REMARK 465 ASN B 25 REMARK 465 ASP B 134 REMARK 465 MET C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 SER C 0 REMARK 465 HIS C 1 REMARK 465 HIS C 2 REMARK 465 HIS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 SER C 7 REMARK 465 SER C 8 REMARK 465 GLY C 9 REMARK 465 LEU C 10 REMARK 465 VAL C 11 REMARK 465 PRO C 12 REMARK 465 ARG C 13 REMARK 465 GLY C 14 REMARK 465 SER C 15 REMARK 465 ALA C 16 REMARK 465 LYS C 17 REMARK 465 VAL C 18 REMARK 465 ARG C 19 REMARK 465 PRO C 20 REMARK 465 THR C 21 REMARK 465 TYR C 22 REMARK 465 SER C 23 REMARK 465 THR C 24 REMARK 465 ASN C 25 REMARK 465 ASP C 134 REMARK 465 MET D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 HIS D 1 REMARK 465 HIS D 2 REMARK 465 HIS D 3 REMARK 465 HIS D 4 REMARK 465 HIS D 5 REMARK 465 HIS D 6 REMARK 465 SER D 7 REMARK 465 SER D 8 REMARK 465 GLY D 9 REMARK 465 LEU D 10 REMARK 465 VAL D 11 REMARK 465 PRO D 12 REMARK 465 ARG D 13 REMARK 465 GLY D 14 REMARK 465 SER D 15 REMARK 465 ALA D 16 REMARK 465 LYS D 17 REMARK 465 VAL D 18 REMARK 465 ARG D 19 REMARK 465 PRO D 20 REMARK 465 THR D 21 REMARK 465 TYR D 22 REMARK 465 SER D 23 REMARK 465 THR D 24 REMARK 465 ASN D 25 REMARK 465 ALA D 26 REMARK 465 SER D 27 REMARK 465 ASP D 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 65 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 109 33.14 -95.57 REMARK 500 THR A 122 57.57 -117.14 REMARK 500 ARG C 109 32.66 -90.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 97 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9R6W RELATED DB: PDB REMARK 900 9R6W IS WILD-TYPE STRUCTURE DBREF1 9R7G A 16 134 UNP PCSB_STRP2 DBREF2 9R7G A A0A0H2ZQ76 274 392 DBREF1 9R7G B 16 134 UNP PCSB_STRP2 DBREF2 9R7G B A0A0H2ZQ76 274 392 DBREF1 9R7G C 16 134 UNP PCSB_STRP2 DBREF2 9R7G C A0A0H2ZQ76 274 392 DBREF1 9R7G D 16 134 UNP PCSB_STRP2 DBREF2 9R7G D A0A0H2ZQ76 274 392 SEQADV 9R7G MET A -3 UNP A0A0H2ZQ7 INITIATING METHIONINE SEQADV 9R7G GLY A -2 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER A -1 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER A 0 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS A 1 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS A 2 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS A 3 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS A 4 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS A 5 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS A 6 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER A 7 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER A 8 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G GLY A 9 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G LEU A 10 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G VAL A 11 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G PRO A 12 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G ARG A 13 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G GLY A 14 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER A 15 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G ALA A 34 UNP A0A0H2ZQ7 CYS 292 ENGINEERED MUTATION SEQADV 9R7G MET B -3 UNP A0A0H2ZQ7 INITIATING METHIONINE SEQADV 9R7G GLY B -2 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER B -1 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER B 0 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS B 1 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS B 2 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS B 3 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS B 4 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS B 5 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS B 6 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER B 7 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER B 8 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G GLY B 9 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G LEU B 10 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G VAL B 11 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G PRO B 12 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G ARG B 13 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G GLY B 14 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER B 15 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G ALA B 34 UNP A0A0H2ZQ7 CYS 292 ENGINEERED MUTATION SEQADV 9R7G MET C -3 UNP A0A0H2ZQ7 INITIATING METHIONINE SEQADV 9R7G GLY C -2 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER C -1 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER C 0 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS C 1 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS C 2 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS C 3 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS C 4 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS C 5 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS C 6 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER C 7 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER C 8 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G GLY C 9 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G LEU C 10 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G VAL C 11 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G PRO C 12 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G ARG C 13 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G GLY C 14 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER C 15 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G ALA C 34 UNP A0A0H2ZQ7 CYS 292 ENGINEERED MUTATION SEQADV 9R7G MET D -3 UNP A0A0H2ZQ7 INITIATING METHIONINE SEQADV 9R7G GLY D -2 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER D -1 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER D 0 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS D 1 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS D 2 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS D 3 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS D 4 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS D 5 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G HIS D 6 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER D 7 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER D 8 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G GLY D 9 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G LEU D 10 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G VAL D 11 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G PRO D 12 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G ARG D 13 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G GLY D 14 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G SER D 15 UNP A0A0H2ZQ7 EXPRESSION TAG SEQADV 9R7G ALA D 34 UNP A0A0H2ZQ7 CYS 292 ENGINEERED MUTATION SEQRES 1 A 138 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 138 LEU VAL PRO ARG GLY SER ALA LYS VAL ARG PRO THR TYR SEQRES 3 A 138 SER THR ASN ALA SER SER TYR PRO ILE GLY GLU ALA THR SEQRES 4 A 138 TRP GLY VAL LYS THR LEU ALA PRO TRP ALA GLY ASP TYR SEQRES 5 A 138 TRP GLY ASN GLY ALA GLN TRP ALA THR SER ALA ALA ALA SEQRES 6 A 138 ALA GLY PHE ARG THR GLY SER THR PRO GLN VAL GLY ALA SEQRES 7 A 138 ILE ALA CYS TRP ASN ASP GLY GLY TYR GLY HIS VAL ALA SEQRES 8 A 138 VAL VAL THR ALA VAL GLU SER THR THR ARG ILE GLN VAL SEQRES 9 A 138 SER GLU SER ASN TYR ALA GLY ASN ARG THR ILE GLY ASN SEQRES 10 A 138 HIS ARG GLY TRP PHE ASN PRO THR THR THR SER GLU GLY SEQRES 11 A 138 PHE VAL THR TYR ILE TYR ALA ASP SEQRES 1 B 138 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 138 LEU VAL PRO ARG GLY SER ALA LYS VAL ARG PRO THR TYR SEQRES 3 B 138 SER THR ASN ALA SER SER TYR PRO ILE GLY GLU ALA THR SEQRES 4 B 138 TRP GLY VAL LYS THR LEU ALA PRO TRP ALA GLY ASP TYR SEQRES 5 B 138 TRP GLY ASN GLY ALA GLN TRP ALA THR SER ALA ALA ALA SEQRES 6 B 138 ALA GLY PHE ARG THR GLY SER THR PRO GLN VAL GLY ALA SEQRES 7 B 138 ILE ALA CYS TRP ASN ASP GLY GLY TYR GLY HIS VAL ALA SEQRES 8 B 138 VAL VAL THR ALA VAL GLU SER THR THR ARG ILE GLN VAL SEQRES 9 B 138 SER GLU SER ASN TYR ALA GLY ASN ARG THR ILE GLY ASN SEQRES 10 B 138 HIS ARG GLY TRP PHE ASN PRO THR THR THR SER GLU GLY SEQRES 11 B 138 PHE VAL THR TYR ILE TYR ALA ASP SEQRES 1 C 138 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 138 LEU VAL PRO ARG GLY SER ALA LYS VAL ARG PRO THR TYR SEQRES 3 C 138 SER THR ASN ALA SER SER TYR PRO ILE GLY GLU ALA THR SEQRES 4 C 138 TRP GLY VAL LYS THR LEU ALA PRO TRP ALA GLY ASP TYR SEQRES 5 C 138 TRP GLY ASN GLY ALA GLN TRP ALA THR SER ALA ALA ALA SEQRES 6 C 138 ALA GLY PHE ARG THR GLY SER THR PRO GLN VAL GLY ALA SEQRES 7 C 138 ILE ALA CYS TRP ASN ASP GLY GLY TYR GLY HIS VAL ALA SEQRES 8 C 138 VAL VAL THR ALA VAL GLU SER THR THR ARG ILE GLN VAL SEQRES 9 C 138 SER GLU SER ASN TYR ALA GLY ASN ARG THR ILE GLY ASN SEQRES 10 C 138 HIS ARG GLY TRP PHE ASN PRO THR THR THR SER GLU GLY SEQRES 11 C 138 PHE VAL THR TYR ILE TYR ALA ASP SEQRES 1 D 138 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 138 LEU VAL PRO ARG GLY SER ALA LYS VAL ARG PRO THR TYR SEQRES 3 D 138 SER THR ASN ALA SER SER TYR PRO ILE GLY GLU ALA THR SEQRES 4 D 138 TRP GLY VAL LYS THR LEU ALA PRO TRP ALA GLY ASP TYR SEQRES 5 D 138 TRP GLY ASN GLY ALA GLN TRP ALA THR SER ALA ALA ALA SEQRES 6 D 138 ALA GLY PHE ARG THR GLY SER THR PRO GLN VAL GLY ALA SEQRES 7 D 138 ILE ALA CYS TRP ASN ASP GLY GLY TYR GLY HIS VAL ALA SEQRES 8 D 138 VAL VAL THR ALA VAL GLU SER THR THR ARG ILE GLN VAL SEQRES 9 D 138 SER GLU SER ASN TYR ALA GLY ASN ARG THR ILE GLY ASN SEQRES 10 D 138 HIS ARG GLY TRP PHE ASN PRO THR THR THR SER GLU GLY SEQRES 11 D 138 PHE VAL THR TYR ILE TYR ALA ASP HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO C 301 4 HET EDO C 302 4 HET EDO C 303 4 HET EDO C 304 4 HET EDO C 305 4 HET EDO C 306 4 HET EDO C 307 4 HET EDO D 201 4 HET EDO D 202 4 HET EDO D 203 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 22(C2 H6 O2) FORMUL 27 HOH *328(H2 O) HELIX 1 AA1 GLU A 33 ALA A 42 1 10 HELIX 2 AA2 ASN A 51 ALA A 53 5 3 HELIX 3 AA3 GLN A 54 ALA A 62 1 9 HELIX 4 AA4 GLU B 33 ALA B 42 1 10 HELIX 5 AA5 ASN B 51 ALA B 53 5 3 HELIX 6 AA6 GLN B 54 ALA B 62 1 9 HELIX 7 AA7 GLU C 33 ALA C 42 1 10 HELIX 8 AA8 ASN C 51 ALA C 53 5 3 HELIX 9 AA9 GLN C 54 ALA C 62 1 9 HELIX 10 AB1 GLU D 33 ALA D 42 1 10 HELIX 11 AB2 ASN D 51 ALA D 53 5 3 HELIX 12 AB3 GLN D 54 ALA D 62 1 9 SHEET 1 AA1 5 THR A 66 GLY A 67 0 SHEET 2 AA1 5 PHE A 127 ILE A 131 -1 O TYR A 130 N GLY A 67 SHEET 3 AA1 5 ILE A 75 ASN A 79 -1 N CYS A 77 O THR A 129 SHEET 4 AA1 5 HIS A 85 SER A 94 -1 O HIS A 85 N TRP A 78 SHEET 5 AA1 5 ARG A 97 SER A 101 -1 O ARG A 97 N GLU A 93 SHEET 1 AA2 5 ARG B 65 GLY B 67 0 SHEET 2 AA2 5 PHE B 127 TYR B 132 -1 O TYR B 130 N GLY B 67 SHEET 3 AA2 5 ILE B 75 ASN B 79 -1 N CYS B 77 O THR B 129 SHEET 4 AA2 5 HIS B 85 SER B 94 -1 O HIS B 85 N TRP B 78 SHEET 5 AA2 5 ARG B 97 SER B 101 -1 O ARG B 97 N GLU B 93 SHEET 1 AA3 5 THR C 66 GLY C 67 0 SHEET 2 AA3 5 PHE C 127 ILE C 131 -1 O TYR C 130 N GLY C 67 SHEET 3 AA3 5 ILE C 75 ASN C 79 -1 N ILE C 75 O ILE C 131 SHEET 4 AA3 5 HIS C 85 SER C 94 -1 O HIS C 85 N TRP C 78 SHEET 5 AA3 5 ARG C 97 SER C 101 -1 O ARG C 97 N GLU C 93 SHEET 1 AA4 5 THR D 66 GLY D 67 0 SHEET 2 AA4 5 PHE D 127 ILE D 131 -1 O TYR D 130 N GLY D 67 SHEET 3 AA4 5 ILE D 75 ASN D 79 -1 N CYS D 77 O THR D 129 SHEET 4 AA4 5 HIS D 85 SER D 94 -1 O HIS D 85 N TRP D 78 SHEET 5 AA4 5 ARG D 97 SER D 101 -1 O ARG D 97 N GLU D 93 CRYST1 68.878 47.920 84.424 90.00 97.93 90.00 P 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014518 0.000000 0.002022 0.00000 SCALE2 0.000000 0.020868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011959 0.00000 CONECT 3268 3269 3270 CONECT 3269 3268 CONECT 3270 3268 3271 CONECT 3271 3270 CONECT 3272 3273 3274 CONECT 3273 3272 CONECT 3274 3272 3275 CONECT 3275 3274 CONECT 3276 3277 3278 CONECT 3277 3276 CONECT 3278 3276 3279 CONECT 3279 3278 CONECT 3280 3281 3282 CONECT 3281 3280 CONECT 3282 3280 3283 CONECT 3283 3282 CONECT 3284 3285 3286 CONECT 3285 3284 CONECT 3286 3284 3287 CONECT 3287 3286 CONECT 3288 3289 3290 CONECT 3289 3288 CONECT 3290 3288 3291 CONECT 3291 3290 CONECT 3292 3293 3294 CONECT 3293 3292 CONECT 3294 3292 3295 CONECT 3295 3294 CONECT 3296 3297 3298 CONECT 3297 3296 CONECT 3298 3296 3299 CONECT 3299 3298 CONECT 3300 3301 3302 CONECT 3301 3300 CONECT 3302 3300 3303 CONECT 3303 3302 CONECT 3304 3305 3306 CONECT 3305 3304 CONECT 3306 3304 3307 CONECT 3307 3306 CONECT 3308 3309 3310 CONECT 3309 3308 CONECT 3310 3308 3311 CONECT 3311 3310 CONECT 3312 3313 3314 CONECT 3313 3312 CONECT 3314 3312 3315 CONECT 3315 3314 CONECT 3316 3317 3318 CONECT 3317 3316 CONECT 3318 3316 3319 CONECT 3319 3318 CONECT 3320 3321 3322 CONECT 3321 3320 CONECT 3322 3320 3323 CONECT 3323 3322 CONECT 3324 3325 3326 CONECT 3325 3324 CONECT 3326 3324 3327 CONECT 3327 3326 CONECT 3328 3329 3330 CONECT 3329 3328 CONECT 3330 3328 3331 CONECT 3331 3330 CONECT 3332 3333 3334 CONECT 3333 3332 CONECT 3334 3332 3335 CONECT 3335 3334 CONECT 3336 3337 3338 CONECT 3337 3336 CONECT 3338 3336 3339 CONECT 3339 3338 CONECT 3340 3341 3342 CONECT 3341 3340 CONECT 3342 3340 3343 CONECT 3343 3342 CONECT 3344 3345 3346 CONECT 3345 3344 CONECT 3346 3344 3347 CONECT 3347 3346 CONECT 3348 3349 3350 CONECT 3349 3348 CONECT 3350 3348 3351 CONECT 3351 3350 CONECT 3352 3353 3354 CONECT 3353 3352 CONECT 3354 3352 3355 CONECT 3355 3354 MASTER 440 0 22 12 20 0 0 6 3662 4 88 44 END