HEADER CELL CYCLE 19-MAY-25 9R9B TITLE CRYSTAL STRUCTURE OF CLATHRIN HEAVY CHAIN IN COMPLEX WITH A TITLE 2 PEPTIDOMIMETIC INHIBITOR OF THE TACC3 INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN HEAVY CHAIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SP-TACC3; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CLTC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS MITOTIC SPINDLE HYDROCARBON STAPLED PEPTIDE MICROTUBULE-BINDING, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR R.BAYLISS,V.GUNNING REVDAT 1 08-APR-26 9R9B 0 JRNL AUTH V.GUNNING,R.BAYLISS JRNL TITL DEVELOPMENT OF A PEPTIDOMIMETIC INHIBITOR OF THE JRNL TITL 2 TACC3/CLATHRIN INTERACTION ON THE MITOTIC SPINDLE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.88) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 55.9 REMARK 3 NUMBER OF REFLECTIONS : 24209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.973 REMARK 3 FREE R VALUE TEST SET COUNT : 1204 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.4580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01100 REMARK 3 B22 (A**2) : 0.01100 REMARK 3 B33 (A**2) : -0.03500 REMARK 3 B12 (A**2) : 0.00500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.569 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.142 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4722 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6391 ; 2.284 ; 1.814 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 583 ; 7.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 23 ;19.468 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 831 ;16.839 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 726 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3546 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1959 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3248 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2354 ; 4.040 ; 2.972 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2927 ; 6.329 ; 5.334 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2368 ; 5.639 ; 3.225 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3464 ; 8.332 ; 5.738 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 1 Ap 572 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9700 29.3380 -19.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.0532 T22: 0.2224 REMARK 3 T33: 0.2812 T12: -0.0502 REMARK 3 T13: -0.0519 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 0.6728 L22: 0.5514 REMARK 3 L33: 2.7315 L12: 0.0008 REMARK 3 L13: -0.5703 L23: 0.2786 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: -0.2644 S13: 0.1358 REMARK 3 S21: 0.0503 S22: -0.2063 S23: 0.0242 REMARK 3 S31: 0.0073 S32: 0.1764 S33: 0.1072 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Bp 550 Bp 569 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7380 29.0080 -50.2590 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.0848 REMARK 3 T33: 0.2752 T12: -0.0256 REMARK 3 T13: 0.0245 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 5.3789 L22: 13.7589 REMARK 3 L33: 14.3066 L12: 5.0101 REMARK 3 L13: -4.6117 L23: -0.4118 REMARK 3 S TENSOR REMARK 3 S11: -0.1553 S12: -0.0385 S13: 0.1387 REMARK 3 S21: 0.2211 S22: 0.1357 S23: -1.0763 REMARK 3 S31: 0.1101 S32: 0.6179 S33: 0.0196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9R9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1292147727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24209 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.146 REMARK 200 RESOLUTION RANGE LOW (A) : 96.318 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 39.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V POLYETHYLENE GLYCOL 3350 200 REMARK 280 MM TRI-POTASSIUM CITRATE, PH 8.3, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.95400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.90800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.43100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 177.38500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.47700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.95400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 141.90800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 177.38500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.43100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.47700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 573 REMARK 465 ARG A 574 REMARK 465 SER B 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 374 CG CD OE1 NE2 REMARK 470 LYS B 550 CG CD CE NZ REMARK 470 GLU B 551 CG CD OE1 OE2 REMARK 470 ARG B 568 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 14 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 LEU A 18 CB - CG - CD1 ANGL. DEV. = 10.9 DEGREES REMARK 500 MET A 95 CG - SD - CE ANGL. DEV. = 17.0 DEGREES REMARK 500 MET A 132 CG - SD - CE ANGL. DEV. = 10.9 DEGREES REMARK 500 GLN A 174 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 400 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 519 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 523 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 523 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET A 535 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 12 -69.22 -106.22 REMARK 500 SER A 34 -178.54 176.06 REMARK 500 GLN A 47 97.08 -68.30 REMARK 500 ASN A 60 77.12 -113.58 REMARK 500 PRO A 65 75.76 -68.36 REMARK 500 ALA A 76 -57.55 -129.50 REMARK 500 LYS A 96 30.33 73.04 REMARK 500 ASN A 117 19.14 -153.44 REMARK 500 THR A 123 -157.02 -93.53 REMARK 500 GLN A 174 50.82 -141.14 REMARK 500 ALA A 224 44.51 -94.90 REMARK 500 PRO A 236 145.16 -39.38 REMARK 500 PRO A 237 153.88 -42.08 REMARK 500 ASN A 296 148.51 -174.15 REMARK 500 GLN A 343 44.33 70.72 REMARK 500 ASN A 356 63.89 64.84 REMARK 500 PRO A 408 123.60 -39.81 REMARK 500 SER A 469 4.83 -68.08 REMARK 500 VAL A 470 -44.81 -130.61 REMARK 500 SER A 525 68.01 -150.41 REMARK 500 ASN A 557 33.79 82.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 297 0.18 SIDE CHAIN REMARK 500 ARG A 320 0.10 SIDE CHAIN REMARK 500 ARG A 519 0.18 SIDE CHAIN REMARK 500 ARG A 523 0.09 SIDE CHAIN REMARK 500 ARG B 555 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9R9B A 1 574 UNP P11442 CLH1_RAT 1 574 DBREF 9R9B B 550 570 PDB 9R9B 9R9B 550 570 SEQADV 9R9B LYS A 301 UNP P11442 GLU 301 CONFLICT SEQRES 1 A 574 MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS LEU SEQRES 2 A 574 GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE GLY SEQRES 3 A 574 PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE CYS SEQRES 4 A 574 ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL ILE SEQRES 5 A 574 ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG PRO SEQRES 6 A 574 ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER LYS SEQRES 7 A 574 VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE PHE SEQRES 8 A 574 ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR MET SEQRES 9 A 574 THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU ASN SEQRES 10 A 574 THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS TRP SEQRES 11 A 574 SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE ASP SEQRES 12 A 574 ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN TYR SEQRES 13 A 574 ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR GLY SEQRES 14 A 574 ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET GLN SEQRES 15 A 574 LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE GLU SEQRES 16 A 574 GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU GLY SEQRES 17 A 574 ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL ARG SEQRES 18 A 574 GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL GLY SEQRES 19 A 574 THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS ALA SEQRES 20 A 574 VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP PHE SEQRES 21 A 574 PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL VAL SEQRES 22 A 574 PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR ASP SEQRES 23 A 574 LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SER SEQRES 24 A 574 GLY LYS THR ILE PHE VAL THR ALA PRO HIS GLU ALA THR SEQRES 25 A 574 ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL LEU SEQRES 26 A 574 SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR ILE SEQRES 27 A 574 THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG MET SEQRES 28 A 574 ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU PHE SEQRES 29 A 574 ALA ARG LYS PHE ASN ALA LEU PHE ALA GLN GLY ASN TYR SEQRES 30 A 574 SER GLU ALA ALA LYS VAL ALA ALA ASN ALA PRO LYS GLY SEQRES 31 A 574 ILE LEU ARG THR PRO ASP THR ILE ARG ARG PHE GLN SER SEQRES 32 A 574 VAL PRO ALA GLN PRO GLY GLN THR SER PRO LEU LEU GLN SEQRES 33 A 574 TYR PHE GLY ILE LEU LEU ASP GLN GLY GLN LEU ASN LYS SEQRES 34 A 574 TYR GLU SER LEU GLU LEU CYS ARG PRO VAL LEU GLN GLN SEQRES 35 A 574 GLY ARG LYS GLN LEU LEU GLU LYS TRP LEU LYS GLU ASP SEQRES 36 A 574 LYS LEU GLU CYS SER GLU GLU LEU GLY ASP LEU VAL LYS SEQRES 37 A 574 SER VAL ASP PRO THR LEU ALA LEU SER VAL TYR LEU ARG SEQRES 38 A 574 ALA ASN VAL PRO ASN LYS VAL ILE GLN CYS PHE ALA GLU SEQRES 39 A 574 THR GLY GLN VAL GLN LYS ILE VAL LEU TYR ALA LYS LYS SEQRES 40 A 574 VAL GLY TYR THR PRO ASP TRP ILE PHE LEU LEU ARG ASN SEQRES 41 A 574 VAL MET ARG ILE SER PRO ASP GLN GLY GLN GLN PHE ALA SEQRES 42 A 574 GLN MET LEU VAL GLN ASP GLU GLU PRO LEU ALA ASP ILE SEQRES 43 A 574 THR GLN ILE VAL ASP VAL PHE MET GLU TYR ASN LEU ILE SEQRES 44 A 574 GLN GLN CYS THR ALA PHE LEU LEU ASP ALA LEU LYS ASN SEQRES 45 A 574 ASN ARG SEQRES 1 B 21 LYS GLU SER ALA LEU ARG LYS MK8 GLU LEU LEU MK8 GLU SEQRES 2 B 21 PHE ASP PRO LEU PHE ARG ASP SER HET MK8 B 557 9 HET MK8 B 561 9 HETNAM MK8 2-METHYL-L-NORLEUCINE FORMUL 2 MK8 2(C7 H15 N O2) FORMUL 3 HOH *67(H2 O) HELIX 1 AA1 GLN A 16 GLY A 19 5 4 HELIX 2 AA2 ASN A 21 ILE A 25 5 5 HELIX 3 AA3 HIS A 145 ALA A 149 5 5 HELIX 4 AA4 ASN A 333 VAL A 341 1 9 HELIX 5 AA5 ASN A 344 ASN A 356 1 13 HELIX 6 AA6 ALA A 360 ALA A 373 1 14 HELIX 7 AA7 ASN A 376 ALA A 387 1 12 HELIX 8 AA8 THR A 394 SER A 403 1 10 HELIX 9 AA9 SER A 412 ASP A 423 1 12 HELIX 10 AB1 ASN A 428 GLN A 442 1 15 HELIX 11 AB2 LYS A 445 GLU A 454 1 10 HELIX 12 AB3 SER A 460 SER A 469 1 10 HELIX 13 AB4 ASP A 471 ASN A 483 1 13 HELIX 14 AB5 VAL A 484 THR A 495 1 12 HELIX 15 AB6 GLN A 497 GLN A 499 5 3 HELIX 16 AB7 LYS A 500 VAL A 508 1 9 HELIX 17 AB8 ASP A 513 SER A 525 1 13 HELIX 18 AB9 SER A 525 LEU A 536 1 12 HELIX 19 AC1 ASP A 545 ASN A 557 1 13 HELIX 20 AC2 LEU A 558 ASN A 572 1 15 HELIX 21 AC3 SER B 552 ASP B 564 1 13 HELIX 22 AC4 ASP B 564 ASP B 569 1 6 SHEET 1 AA1 4 ILE A 7 GLN A 14 0 SHEET 2 AA1 4 GLN A 323 VAL A 329 -1 O VAL A 324 N HIS A 12 SHEET 3 AA1 4 GLY A 314 VAL A 318 -1 N ILE A 315 O VAL A 327 SHEET 4 AA1 4 VAL A 305 HIS A 309 -1 N HIS A 309 O GLY A 314 SHEET 1 AA2 4 LEU A 30 SER A 34 0 SHEET 2 AA2 4 PHE A 37 VAL A 44 -1 O CYS A 39 N THR A 31 SHEET 3 AA2 4 GLN A 47 ASP A 54 -1 O VAL A 51 N ILE A 40 SHEET 4 AA2 4 ILE A 62 ARG A 64 -1 O ILE A 62 N ILE A 52 SHEET 1 AA3 4 SER A 70 MET A 73 0 SHEET 2 AA3 4 VAL A 79 ALA A 84 -1 O ALA A 81 N ILE A 72 SHEET 3 AA3 4 THR A 87 ASN A 92 -1 O GLN A 89 N LEU A 82 SHEET 4 AA3 4 SER A 97 THR A 103 -1 O SER A 97 N ASN A 92 SHEET 1 AA4 4 PHE A 110 TRP A 113 0 SHEET 2 AA4 4 THR A 118 VAL A 122 -1 O ALA A 120 N LYS A 112 SHEET 3 AA4 4 ALA A 126 SER A 131 -1 O TRP A 130 N VAL A 119 SHEET 4 AA4 4 VAL A 139 ASP A 143 -1 O VAL A 139 N HIS A 129 SHEET 1 AA5 4 GLN A 152 THR A 158 0 SHEET 2 AA5 4 TRP A 164 ALA A 172 -1 O LEU A 166 N ARG A 157 SHEET 3 AA5 4 VAL A 177 SER A 185 -1 O GLN A 182 N LEU A 167 SHEET 4 AA5 4 PRO A 193 ILE A 194 -1 O ILE A 194 N MET A 181 SHEET 1 AA6 4 ALA A 198 PHE A 204 0 SHEET 2 AA6 4 SER A 213 GLY A 222 -1 O LEU A 215 N ALA A 202 SHEET 3 AA6 4 GLY A 225 GLU A 232 -1 O ILE A 231 N PHE A 216 SHEET 4 AA6 4 LYS A 246 ASP A 249 -1 O VAL A 248 N LEU A 228 SHEET 1 AA7 4 PRO A 261 SER A 267 0 SHEET 2 AA7 4 VAL A 272 THR A 277 -1 O PHE A 274 N GLN A 265 SHEET 3 AA7 4 TYR A 281 ASP A 286 -1 O TYR A 285 N VAL A 273 SHEET 4 AA7 4 CYS A 292 ARG A 297 -1 O ILE A 293 N LEU A 284 LINK C LYS B 556 N MK8 B 557 1555 1555 1.42 LINK C MK8 B 557 N GLU B 558 1555 1555 1.44 LINK CE MK8 B 557 CE MK8 B 561 1555 1555 1.33 LINK C LEU B 560 N MK8 B 561 1555 1555 1.41 LINK C MK8 B 561 N GLU B 562 1555 1555 1.43 CRYST1 111.218 111.218 212.862 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008991 0.005191 0.000000 0.00000 SCALE2 0.000000 0.010382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004698 0.00000 CONECT 4513 4521 CONECT 4520 4522 4523 4529 CONECT 4521 4513 4523 CONECT 4522 4520 CONECT 4523 4520 4521 4524 4528 CONECT 4524 4523 4527 CONECT 4525 4526 4527 CONECT 4526 4525 4560 CONECT 4527 4524 4525 CONECT 4528 4523 CONECT 4529 4520 CONECT 4548 4555 CONECT 4554 4556 4557 4563 CONECT 4555 4548 4557 CONECT 4556 4554 CONECT 4557 4554 4555 4558 4562 CONECT 4558 4557 4561 CONECT 4559 4560 4561 CONECT 4560 4526 4559 CONECT 4561 4558 4559 CONECT 4562 4557 CONECT 4563 4554 MASTER 419 0 2 22 28 0 0 6 4695 2 22 47 END