HEADER PROTEIN BINDING 21-MAY-25 9RB5 TITLE STAPHYLOKINASE SY155 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAPHYLOKINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SAK, SA1758; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THROMBOLYSIS, THROMBOLYTIC AGENT, STROKE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEGRAND,P.KADERAVEK,L.ZIDEK,M.MAREK,Z.PROKOP,J.DAMBORSKY REVDAT 1 15-APR-26 9RB5 0 JRNL AUTH A.LEGRAND,L.KASIAROVA,N.VERMA,J.MICAN,A.STRUNGA, JRNL AUTH 2 J.IGLESIAS-PLANAS,J.KUCERA,T.HENEK,P.VANACEK,P.KADERAVEK, JRNL AUTH 3 L.ZIDEK,J.DAMBORSKY,S.MAZURENKO,D.BEDNAR,L.HERNYCHOVA, JRNL AUTH 4 Z.PROKOP,M.MAREK JRNL TITL DYNAMICS OF NON-IMMUNOGENIC STAPHYLOKINASE THROMBOLYTICS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CYANA THROUGH NMRTIST.ORG REMARK 4 REMARK 4 9RB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1292147151. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 50 MM SODIUM PHOSPHATE 100 MM REMARK 210 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 466 UM [U-13C; U-15N] REMARK 210 STAPHYLOKINASE SY155, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM NACL, REMARK 210 0.5 MM EDTA, 1 MM DTT, 0.04 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 CBCACONH; 3D 1H-13C NOESY; 3D REMARK 210 HNCA; 3D HNCO; 3D 1H-15N NOESY; REMARK 210 CBCANH; 3D C(CO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, ARTINA, POKY, I-PINE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 149.33 -173.50 REMARK 500 1 THR A 21 -37.43 -130.03 REMARK 500 1 SER A 41 76.53 -116.37 REMARK 500 1 HIS A 43 175.01 -57.55 REMARK 500 1 PRO A 48 78.06 -69.76 REMARK 500 1 THR A 71 -61.28 -90.45 REMARK 500 1 GLU A 80 135.46 -173.79 REMARK 500 1 PRO A 114 -178.58 -69.78 REMARK 500 2 LYS A 6 179.03 -57.07 REMARK 500 2 ALA A 15 119.27 -174.28 REMARK 500 2 SER A 41 76.63 -113.51 REMARK 500 2 PRO A 42 -172.97 -69.83 REMARK 500 2 PRO A 48 77.58 -69.75 REMARK 500 2 THR A 71 -61.30 -91.69 REMARK 500 2 ALA A 72 -169.87 -67.44 REMARK 500 2 GLU A 80 130.28 -177.89 REMARK 500 2 PRO A 114 -169.98 -69.71 REMARK 500 2 PRO A 123 -175.94 -69.71 REMARK 500 3 PHE A 4 -73.92 -52.32 REMARK 500 3 ASP A 5 111.72 -179.16 REMARK 500 3 GLU A 19 156.26 -49.76 REMARK 500 3 SER A 41 76.56 -116.83 REMARK 500 3 PRO A 48 76.60 -69.69 REMARK 500 3 THR A 54 107.13 -59.58 REMARK 500 3 THR A 71 -61.53 -98.04 REMARK 500 3 ALA A 72 -169.55 -73.15 REMARK 500 3 GLU A 80 128.33 -177.35 REMARK 500 3 PRO A 114 -169.42 -69.76 REMARK 500 4 ASP A 13 145.22 -171.49 REMARK 500 4 GLU A 19 156.55 -49.82 REMARK 500 4 SER A 41 76.33 -115.22 REMARK 500 4 HIS A 43 176.39 -57.22 REMARK 500 4 PRO A 48 76.38 -69.80 REMARK 500 4 GLU A 80 147.08 -179.56 REMARK 500 4 THR A 107 -179.84 -173.26 REMARK 500 4 PRO A 114 -170.22 -69.78 REMARK 500 5 SER A 41 76.67 -113.82 REMARK 500 5 PRO A 48 76.39 -69.77 REMARK 500 5 LEU A 55 78.04 -104.91 REMARK 500 5 THR A 71 -61.32 -95.63 REMARK 500 5 ALA A 72 -171.19 -68.65 REMARK 500 5 GLU A 80 123.95 -177.28 REMARK 500 5 PRO A 114 -170.15 -69.79 REMARK 500 6 SER A 16 56.52 -99.62 REMARK 500 6 SER A 41 76.60 -113.40 REMARK 500 6 PRO A 48 76.53 -69.83 REMARK 500 6 ALA A 72 -79.65 -108.95 REMARK 500 6 GLU A 80 131.13 -173.59 REMARK 500 6 PRO A 114 -170.84 -69.71 REMARK 500 7 LYS A 11 130.38 -173.76 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34996 RELATED DB: BMRB REMARK 900 STAPHYLOKINASE SY155 DBREF 9RB5 A 1 136 UNP Q99SU7 SAK_STAAN 28 163 SEQADV 9RB5 ALA A 35 UNP Q99SU7 LYS 62 CONFLICT SEQADV 9RB5 GLN A 65 UNP Q99SU7 GLU 92 CONFLICT SEQADV 9RB5 ARG A 74 UNP Q99SU7 LYS 101 CONFLICT SEQADV 9RB5 ALA A 82 UNP Q99SU7 ASP 109 CONFLICT SEQADV 9RB5 ALA A 84 UNP Q99SU7 SER 111 CONFLICT SEQADV 9RB5 ALA A 90 UNP Q99SU7 THR 117 CONFLICT SEQADV 9RB5 ASP A 99 UNP Q99SU7 GLU 126 CONFLICT SEQADV 9RB5 SER A 101 UNP Q99SU7 THR 128 CONFLICT SEQADV 9RB5 ALA A 108 UNP Q99SU7 GLU 135 CONFLICT SEQADV 9RB5 ALA A 109 UNP Q99SU7 LYS 136 CONFLICT SEQADV 9RB5 THR A 130 UNP Q99SU7 LYS 157 CONFLICT SEQADV 9RB5 ARG A 135 UNP Q99SU7 LYS 162 CONFLICT SEQRES 1 A 136 SER SER SER PHE ASP LYS GLY LYS TYR LYS LYS GLY ASP SEQRES 2 A 136 ASP ALA SER TYR PHE GLU PRO THR GLY PRO TYR LEU MET SEQRES 3 A 136 VAL ASN VAL THR GLY VAL ASP SER ALA GLY ASN GLU LEU SEQRES 4 A 136 LEU SER PRO HIS TYR VAL GLU PHE PRO ILE LYS PRO GLY SEQRES 5 A 136 THR THR LEU THR LYS GLU LYS ILE GLU TYR TYR VAL GLN SEQRES 6 A 136 TRP ALA LEU ASP ALA THR ALA TYR ARG GLU PHE ARG VAL SEQRES 7 A 136 VAL GLU LEU ALA PRO ALA ALA LYS ILE GLU VAL ALA TYR SEQRES 8 A 136 TYR ASP LYS ASN LYS LYS LYS ASP GLU SER LYS SER PHE SEQRES 9 A 136 PRO ILE THR ALA ALA GLY PHE VAL VAL PRO ASP LEU SER SEQRES 10 A 136 GLU HIS ILE LYS ASN PRO GLY PHE ASN LEU ILE THR THR SEQRES 11 A 136 VAL VAL ILE GLU ARG LYS HELIX 1 AA1 THR A 56 ALA A 72 1 17 SHEET 1 AA1 3 GLU A 38 LEU A 40 0 SHEET 2 AA1 3 LEU A 25 VAL A 32 -1 N GLY A 31 O LEU A 40 SHEET 3 AA1 3 VAL A 45 PHE A 47 -1 O VAL A 45 N VAL A 27 SHEET 1 AA2 4 GLU A 38 LEU A 40 0 SHEET 2 AA2 4 LEU A 25 VAL A 32 -1 N GLY A 31 O LEU A 40 SHEET 3 AA2 4 ILE A 128 ARG A 135 1 O ILE A 133 N VAL A 32 SHEET 4 AA2 4 PHE A 76 LEU A 81 -1 N VAL A 79 O VAL A 132 SHEET 1 AA3 2 THR A 54 LEU A 55 0 SHEET 2 AA3 2 PHE A 111 VAL A 112 -1 O PHE A 111 N LEU A 55 SHEET 1 AA4 2 LYS A 86 TYR A 92 0 SHEET 2 AA4 2 ASP A 99 PRO A 105 -1 O PHE A 104 N ILE A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 147 0 0 1 11 0 0 6 1078 1 0 11 END