data_9RD7 # _entry.id 9RD7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9RD7 pdb_00009rd7 10.2210/pdb9rd7/pdb WWPDB D_1292148124 ? ? EMDB EMD-53928 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-08-26 ? 2 'EM metadata' 1 0 2026-08-26 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9RD7 _pdbx_database_status.recvd_initial_deposition_date 2025-06-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of amyloidogenic antimicrobial peptide Aurein 1.2 polymorph 1 in acqueous solution' _pdbx_database_related.db_id EMD-53928 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email meytal.landau@cssb-hamburg.de _pdbx_contact_author.name_first Meytal _pdbx_contact_author.name_last Landau _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1743-3430 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ragonis-Bachar, P.' 1 ? 'Strati, F.' 2 ? 'Gustavsson, E.' 3 ? 'Khokhlov, A.' 4 ? 'Barnea, E.' 5 ? 'Rayan, B.' 6 ? 'Upchr, A.' 7 ? 'Landau, M.' 8 ? 'Banerjee, S.' 9 0000-0003-1705-1034 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Amyloidogenic Nature and Structural Polymorphism of Antimicrobial, Virulent and Defense Peptides' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ragonis-Bachar, P.' 1 ? primary 'Strati, F.' 2 ? primary 'Gustavsson, E.' 3 ? primary 'Khokhlov, A.' 4 ? primary 'Barnea, E.' 5 ? primary 'Rayan, B.' 6 ? primary 'Upchr, A.' 7 ? primary 'Landau, M.' 8 ? primary 'Banerjee, S.' 9 0000-0003-1705-1034 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Aurein-1.2 _entity.formula_weight 1480.770 _entity.pdbx_number_of_molecules 24 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GLFDIIKKIAESF(NH2)' _entity_poly.pdbx_seq_one_letter_code_can GLFDIIKKIAESFX _entity_poly.pdbx_strand_id T,V,R,X,L,N,J,P,D,F,B,H,S,U,Q,W,K,M,I,O,C,E,A,G _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 PHE n 1 4 ASP n 1 5 ILE n 1 6 ILE n 1 7 LYS n 1 8 LYS n 1 9 ILE n 1 10 ALA n 1 11 GLU n 1 12 SER n 1 13 PHE n 1 14 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 14 _entity_src_gen.gene_src_common_name 'green and golden bell frog' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ranoidea aurea' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 8371 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Ranoidea aurea' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 8371 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY T . n A 1 2 LEU 2 2 2 LEU LEU T . n A 1 3 PHE 3 3 3 PHE PHE T . n A 1 4 ASP 4 4 4 ASP ASP T . n A 1 5 ILE 5 5 5 ILE ILE T . n A 1 6 ILE 6 6 6 ILE ILE T . n A 1 7 LYS 7 7 7 LYS LYS T . n A 1 8 LYS 8 8 8 LYS LYS T . n A 1 9 ILE 9 9 9 ILE ILE T . n A 1 10 ALA 10 10 10 ALA ALA T . n A 1 11 GLU 11 11 11 GLU GLU T . n A 1 12 SER 12 12 12 SER SER T . n A 1 13 PHE 13 13 13 PHE PHE T . n A 1 14 NH2 14 14 14 NH2 NH2 T . n B 1 1 GLY 1 1 1 GLY GLY V . n B 1 2 LEU 2 2 2 LEU LEU V . n B 1 3 PHE 3 3 3 PHE PHE V . n B 1 4 ASP 4 4 4 ASP ASP V . n B 1 5 ILE 5 5 5 ILE ILE V . n B 1 6 ILE 6 6 6 ILE ILE V . n B 1 7 LYS 7 7 7 LYS LYS V . n B 1 8 LYS 8 8 8 LYS LYS V . n B 1 9 ILE 9 9 9 ILE ILE V . n B 1 10 ALA 10 10 10 ALA ALA V . n B 1 11 GLU 11 11 11 GLU GLU V . n B 1 12 SER 12 12 12 SER SER V . n B 1 13 PHE 13 13 13 PHE PHE V . n B 1 14 NH2 14 14 14 NH2 NH2 V . n C 1 1 GLY 1 1 1 GLY GLY R . n C 1 2 LEU 2 2 2 LEU LEU R . n C 1 3 PHE 3 3 3 PHE PHE R . n C 1 4 ASP 4 4 4 ASP ASP R . n C 1 5 ILE 5 5 5 ILE ILE R . n C 1 6 ILE 6 6 6 ILE ILE R . n C 1 7 LYS 7 7 7 LYS LYS R . n C 1 8 LYS 8 8 8 LYS LYS R . n C 1 9 ILE 9 9 9 ILE ILE R . n C 1 10 ALA 10 10 10 ALA ALA R . n C 1 11 GLU 11 11 11 GLU GLU R . n C 1 12 SER 12 12 12 SER SER R . n C 1 13 PHE 13 13 13 PHE PHE R . n C 1 14 NH2 14 14 14 NH2 NH2 R . n D 1 1 GLY 1 1 1 GLY GLY X . n D 1 2 LEU 2 2 2 LEU LEU X . n D 1 3 PHE 3 3 3 PHE PHE X . n D 1 4 ASP 4 4 4 ASP ASP X . n D 1 5 ILE 5 5 5 ILE ILE X . n D 1 6 ILE 6 6 6 ILE ILE X . n D 1 7 LYS 7 7 7 LYS LYS X . n D 1 8 LYS 8 8 8 LYS LYS X . n D 1 9 ILE 9 9 9 ILE ILE X . n D 1 10 ALA 10 10 10 ALA ALA X . n D 1 11 GLU 11 11 11 GLU GLU X . n D 1 12 SER 12 12 12 SER SER X . n D 1 13 PHE 13 13 13 PHE PHE X . n D 1 14 NH2 14 14 14 NH2 NH2 X . n E 1 1 GLY 1 1 1 GLY GLY L . n E 1 2 LEU 2 2 2 LEU LEU L . n E 1 3 PHE 3 3 3 PHE PHE L . n E 1 4 ASP 4 4 4 ASP ASP L . n E 1 5 ILE 5 5 5 ILE ILE L . n E 1 6 ILE 6 6 6 ILE ILE L . n E 1 7 LYS 7 7 7 LYS LYS L . n E 1 8 LYS 8 8 8 LYS LYS L . n E 1 9 ILE 9 9 9 ILE ILE L . n E 1 10 ALA 10 10 10 ALA ALA L . n E 1 11 GLU 11 11 11 GLU GLU L . n E 1 12 SER 12 12 12 SER SER L . n E 1 13 PHE 13 13 13 PHE PHE L . n E 1 14 NH2 14 14 14 NH2 NH2 L . n F 1 1 GLY 1 1 1 GLY GLY N . n F 1 2 LEU 2 2 2 LEU LEU N . n F 1 3 PHE 3 3 3 PHE PHE N . n F 1 4 ASP 4 4 4 ASP ASP N . n F 1 5 ILE 5 5 5 ILE ILE N . n F 1 6 ILE 6 6 6 ILE ILE N . n F 1 7 LYS 7 7 7 LYS LYS N . n F 1 8 LYS 8 8 8 LYS LYS N . n F 1 9 ILE 9 9 9 ILE ILE N . n F 1 10 ALA 10 10 10 ALA ALA N . n F 1 11 GLU 11 11 11 GLU GLU N . n F 1 12 SER 12 12 12 SER SER N . n F 1 13 PHE 13 13 13 PHE PHE N . n F 1 14 NH2 14 14 14 NH2 NH2 N . n G 1 1 GLY 1 1 1 GLY GLY J . n G 1 2 LEU 2 2 2 LEU LEU J . n G 1 3 PHE 3 3 3 PHE PHE J . n G 1 4 ASP 4 4 4 ASP ASP J . n G 1 5 ILE 5 5 5 ILE ILE J . n G 1 6 ILE 6 6 6 ILE ILE J . n G 1 7 LYS 7 7 7 LYS LYS J . n G 1 8 LYS 8 8 8 LYS LYS J . n G 1 9 ILE 9 9 9 ILE ILE J . n G 1 10 ALA 10 10 10 ALA ALA J . n G 1 11 GLU 11 11 11 GLU GLU J . n G 1 12 SER 12 12 12 SER SER J . n G 1 13 PHE 13 13 13 PHE PHE J . n G 1 14 NH2 14 14 14 NH2 NH2 J . n H 1 1 GLY 1 1 1 GLY GLY P . n H 1 2 LEU 2 2 2 LEU LEU P . n H 1 3 PHE 3 3 3 PHE PHE P . n H 1 4 ASP 4 4 4 ASP ASP P . n H 1 5 ILE 5 5 5 ILE ILE P . n H 1 6 ILE 6 6 6 ILE ILE P . n H 1 7 LYS 7 7 7 LYS LYS P . n H 1 8 LYS 8 8 8 LYS LYS P . n H 1 9 ILE 9 9 9 ILE ILE P . n H 1 10 ALA 10 10 10 ALA ALA P . n H 1 11 GLU 11 11 11 GLU GLU P . n H 1 12 SER 12 12 12 SER SER P . n H 1 13 PHE 13 13 13 PHE PHE P . n H 1 14 NH2 14 14 14 NH2 NH2 P . n I 1 1 GLY 1 1 1 GLY GLY D . n I 1 2 LEU 2 2 2 LEU LEU D . n I 1 3 PHE 3 3 3 PHE PHE D . n I 1 4 ASP 4 4 4 ASP ASP D . n I 1 5 ILE 5 5 5 ILE ILE D . n I 1 6 ILE 6 6 6 ILE ILE D . n I 1 7 LYS 7 7 7 LYS LYS D . n I 1 8 LYS 8 8 8 LYS LYS D . n I 1 9 ILE 9 9 9 ILE ILE D . n I 1 10 ALA 10 10 10 ALA ALA D . n I 1 11 GLU 11 11 11 GLU GLU D . n I 1 12 SER 12 12 12 SER SER D . n I 1 13 PHE 13 13 13 PHE PHE D . n I 1 14 NH2 14 14 14 NH2 NH2 D . n J 1 1 GLY 1 1 1 GLY GLY F . n J 1 2 LEU 2 2 2 LEU LEU F . n J 1 3 PHE 3 3 3 PHE PHE F . n J 1 4 ASP 4 4 4 ASP ASP F . n J 1 5 ILE 5 5 5 ILE ILE F . n J 1 6 ILE 6 6 6 ILE ILE F . n J 1 7 LYS 7 7 7 LYS LYS F . n J 1 8 LYS 8 8 8 LYS LYS F . n J 1 9 ILE 9 9 9 ILE ILE F . n J 1 10 ALA 10 10 10 ALA ALA F . n J 1 11 GLU 11 11 11 GLU GLU F . n J 1 12 SER 12 12 12 SER SER F . n J 1 13 PHE 13 13 13 PHE PHE F . n J 1 14 NH2 14 14 14 NH2 NH2 F . n K 1 1 GLY 1 1 1 GLY GLY B . n K 1 2 LEU 2 2 2 LEU LEU B . n K 1 3 PHE 3 3 3 PHE PHE B . n K 1 4 ASP 4 4 4 ASP ASP B . n K 1 5 ILE 5 5 5 ILE ILE B . n K 1 6 ILE 6 6 6 ILE ILE B . n K 1 7 LYS 7 7 7 LYS LYS B . n K 1 8 LYS 8 8 8 LYS LYS B . n K 1 9 ILE 9 9 9 ILE ILE B . n K 1 10 ALA 10 10 10 ALA ALA B . n K 1 11 GLU 11 11 11 GLU GLU B . n K 1 12 SER 12 12 12 SER SER B . n K 1 13 PHE 13 13 13 PHE PHE B . n K 1 14 NH2 14 14 14 NH2 NH2 B . n L 1 1 GLY 1 1 1 GLY GLY H . n L 1 2 LEU 2 2 2 LEU LEU H . n L 1 3 PHE 3 3 3 PHE PHE H . n L 1 4 ASP 4 4 4 ASP ASP H . n L 1 5 ILE 5 5 5 ILE ILE H . n L 1 6 ILE 6 6 6 ILE ILE H . n L 1 7 LYS 7 7 7 LYS LYS H . n L 1 8 LYS 8 8 8 LYS LYS H . n L 1 9 ILE 9 9 9 ILE ILE H . n L 1 10 ALA 10 10 10 ALA ALA H . n L 1 11 GLU 11 11 11 GLU GLU H . n L 1 12 SER 12 12 12 SER SER H . n L 1 13 PHE 13 13 13 PHE PHE H . n L 1 14 NH2 14 14 14 NH2 NH2 H . n M 1 1 GLY 1 1 1 GLY GLY S . n M 1 2 LEU 2 2 2 LEU LEU S . n M 1 3 PHE 3 3 3 PHE PHE S . n M 1 4 ASP 4 4 4 ASP ASP S . n M 1 5 ILE 5 5 5 ILE ILE S . n M 1 6 ILE 6 6 6 ILE ILE S . n M 1 7 LYS 7 7 7 LYS LYS S . n M 1 8 LYS 8 8 8 LYS LYS S . n M 1 9 ILE 9 9 9 ILE ILE S . n M 1 10 ALA 10 10 10 ALA ALA S . n M 1 11 GLU 11 11 11 GLU GLU S . n M 1 12 SER 12 12 12 SER SER S . n M 1 13 PHE 13 13 13 PHE PHE S . n M 1 14 NH2 14 14 14 NH2 NH2 S . n N 1 1 GLY 1 1 1 GLY GLY U . n N 1 2 LEU 2 2 2 LEU LEU U . n N 1 3 PHE 3 3 3 PHE PHE U . n N 1 4 ASP 4 4 4 ASP ASP U . n N 1 5 ILE 5 5 5 ILE ILE U . n N 1 6 ILE 6 6 6 ILE ILE U . n N 1 7 LYS 7 7 7 LYS LYS U . n N 1 8 LYS 8 8 8 LYS LYS U . n N 1 9 ILE 9 9 9 ILE ILE U . n N 1 10 ALA 10 10 10 ALA ALA U . n N 1 11 GLU 11 11 11 GLU GLU U . n N 1 12 SER 12 12 12 SER SER U . n N 1 13 PHE 13 13 13 PHE PHE U . n N 1 14 NH2 14 14 14 NH2 NH2 U . n O 1 1 GLY 1 1 1 GLY GLY Q . n O 1 2 LEU 2 2 2 LEU LEU Q . n O 1 3 PHE 3 3 3 PHE PHE Q . n O 1 4 ASP 4 4 4 ASP ASP Q . n O 1 5 ILE 5 5 5 ILE ILE Q . n O 1 6 ILE 6 6 6 ILE ILE Q . n O 1 7 LYS 7 7 7 LYS LYS Q . n O 1 8 LYS 8 8 8 LYS LYS Q . n O 1 9 ILE 9 9 9 ILE ILE Q . n O 1 10 ALA 10 10 10 ALA ALA Q . n O 1 11 GLU 11 11 11 GLU GLU Q . n O 1 12 SER 12 12 12 SER SER Q . n O 1 13 PHE 13 13 13 PHE PHE Q . n O 1 14 NH2 14 14 14 NH2 NH2 Q . n P 1 1 GLY 1 1 1 GLY GLY W . n P 1 2 LEU 2 2 2 LEU LEU W . n P 1 3 PHE 3 3 3 PHE PHE W . n P 1 4 ASP 4 4 4 ASP ASP W . n P 1 5 ILE 5 5 5 ILE ILE W . n P 1 6 ILE 6 6 6 ILE ILE W . n P 1 7 LYS 7 7 7 LYS LYS W . n P 1 8 LYS 8 8 8 LYS LYS W . n P 1 9 ILE 9 9 9 ILE ILE W . n P 1 10 ALA 10 10 10 ALA ALA W . n P 1 11 GLU 11 11 11 GLU GLU W . n P 1 12 SER 12 12 12 SER SER W . n P 1 13 PHE 13 13 13 PHE PHE W . n P 1 14 NH2 14 14 14 NH2 NH2 W . n Q 1 1 GLY 1 1 1 GLY GLY K . n Q 1 2 LEU 2 2 2 LEU LEU K . n Q 1 3 PHE 3 3 3 PHE PHE K . n Q 1 4 ASP 4 4 4 ASP ASP K . n Q 1 5 ILE 5 5 5 ILE ILE K . n Q 1 6 ILE 6 6 6 ILE ILE K . n Q 1 7 LYS 7 7 7 LYS LYS K . n Q 1 8 LYS 8 8 8 LYS LYS K . n Q 1 9 ILE 9 9 9 ILE ILE K . n Q 1 10 ALA 10 10 10 ALA ALA K . n Q 1 11 GLU 11 11 11 GLU GLU K . n Q 1 12 SER 12 12 12 SER SER K . n Q 1 13 PHE 13 13 13 PHE PHE K . n Q 1 14 NH2 14 14 14 NH2 NH2 K . n R 1 1 GLY 1 1 1 GLY GLY M . n R 1 2 LEU 2 2 2 LEU LEU M . n R 1 3 PHE 3 3 3 PHE PHE M . n R 1 4 ASP 4 4 4 ASP ASP M . n R 1 5 ILE 5 5 5 ILE ILE M . n R 1 6 ILE 6 6 6 ILE ILE M . n R 1 7 LYS 7 7 7 LYS LYS M . n R 1 8 LYS 8 8 8 LYS LYS M . n R 1 9 ILE 9 9 9 ILE ILE M . n R 1 10 ALA 10 10 10 ALA ALA M . n R 1 11 GLU 11 11 11 GLU GLU M . n R 1 12 SER 12 12 12 SER SER M . n R 1 13 PHE 13 13 13 PHE PHE M . n R 1 14 NH2 14 14 14 NH2 NH2 M . n S 1 1 GLY 1 1 1 GLY GLY I . n S 1 2 LEU 2 2 2 LEU LEU I . n S 1 3 PHE 3 3 3 PHE PHE I . n S 1 4 ASP 4 4 4 ASP ASP I . n S 1 5 ILE 5 5 5 ILE ILE I . n S 1 6 ILE 6 6 6 ILE ILE I . n S 1 7 LYS 7 7 7 LYS LYS I . n S 1 8 LYS 8 8 8 LYS LYS I . n S 1 9 ILE 9 9 9 ILE ILE I . n S 1 10 ALA 10 10 10 ALA ALA I . n S 1 11 GLU 11 11 11 GLU GLU I . n S 1 12 SER 12 12 12 SER SER I . n S 1 13 PHE 13 13 13 PHE PHE I . n S 1 14 NH2 14 14 14 NH2 NH2 I . n T 1 1 GLY 1 1 1 GLY GLY O . n T 1 2 LEU 2 2 2 LEU LEU O . n T 1 3 PHE 3 3 3 PHE PHE O . n T 1 4 ASP 4 4 4 ASP ASP O . n T 1 5 ILE 5 5 5 ILE ILE O . n T 1 6 ILE 6 6 6 ILE ILE O . n T 1 7 LYS 7 7 7 LYS LYS O . n T 1 8 LYS 8 8 8 LYS LYS O . n T 1 9 ILE 9 9 9 ILE ILE O . n T 1 10 ALA 10 10 10 ALA ALA O . n T 1 11 GLU 11 11 11 GLU GLU O . n T 1 12 SER 12 12 12 SER SER O . n T 1 13 PHE 13 13 13 PHE PHE O . n T 1 14 NH2 14 14 14 NH2 NH2 O . n U 1 1 GLY 1 1 1 GLY GLY C . n U 1 2 LEU 2 2 2 LEU LEU C . n U 1 3 PHE 3 3 3 PHE PHE C . n U 1 4 ASP 4 4 4 ASP ASP C . n U 1 5 ILE 5 5 5 ILE ILE C . n U 1 6 ILE 6 6 6 ILE ILE C . n U 1 7 LYS 7 7 7 LYS LYS C . n U 1 8 LYS 8 8 8 LYS LYS C . n U 1 9 ILE 9 9 9 ILE ILE C . n U 1 10 ALA 10 10 10 ALA ALA C . n U 1 11 GLU 11 11 11 GLU GLU C . n U 1 12 SER 12 12 12 SER SER C . n U 1 13 PHE 13 13 13 PHE PHE C . n U 1 14 NH2 14 14 14 NH2 NH2 C . n V 1 1 GLY 1 1 1 GLY GLY E . n V 1 2 LEU 2 2 2 LEU LEU E . n V 1 3 PHE 3 3 3 PHE PHE E . n V 1 4 ASP 4 4 4 ASP ASP E . n V 1 5 ILE 5 5 5 ILE ILE E . n V 1 6 ILE 6 6 6 ILE ILE E . n V 1 7 LYS 7 7 7 LYS LYS E . n V 1 8 LYS 8 8 8 LYS LYS E . n V 1 9 ILE 9 9 9 ILE ILE E . n V 1 10 ALA 10 10 10 ALA ALA E . n V 1 11 GLU 11 11 11 GLU GLU E . n V 1 12 SER 12 12 12 SER SER E . n V 1 13 PHE 13 13 13 PHE PHE E . n V 1 14 NH2 14 14 14 NH2 NH2 E . n W 1 1 GLY 1 1 1 GLY GLY A . n W 1 2 LEU 2 2 2 LEU LEU A . n W 1 3 PHE 3 3 3 PHE PHE A . n W 1 4 ASP 4 4 4 ASP ASP A . n W 1 5 ILE 5 5 5 ILE ILE A . n W 1 6 ILE 6 6 6 ILE ILE A . n W 1 7 LYS 7 7 7 LYS LYS A . n W 1 8 LYS 8 8 8 LYS LYS A . n W 1 9 ILE 9 9 9 ILE ILE A . n W 1 10 ALA 10 10 10 ALA ALA A . n W 1 11 GLU 11 11 11 GLU GLU A . n W 1 12 SER 12 12 12 SER SER A . n W 1 13 PHE 13 13 13 PHE PHE A . n W 1 14 NH2 14 14 14 NH2 NH2 A . n X 1 1 GLY 1 1 1 GLY GLY G . n X 1 2 LEU 2 2 2 LEU LEU G . n X 1 3 PHE 3 3 3 PHE PHE G . n X 1 4 ASP 4 4 4 ASP ASP G . n X 1 5 ILE 5 5 5 ILE ILE G . n X 1 6 ILE 6 6 6 ILE ILE G . n X 1 7 LYS 7 7 7 LYS LYS G . n X 1 8 LYS 8 8 8 LYS LYS G . n X 1 9 ILE 9 9 9 ILE ILE G . n X 1 10 ALA 10 10 10 ALA ALA G . n X 1 11 GLU 11 11 11 GLU GLU G . n X 1 12 SER 12 12 12 SER SER G . n X 1 13 PHE 13 13 13 PHE PHE G . n X 1 14 NH2 14 14 14 NH2 NH2 G . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9RD7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9RD7 _struct.title 'Cryo-EM structure of amyloidogenic antimicrobial peptide Aurein 1.2 polymorph 1 in acqueous solution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9RD7 _struct_keywords.text 'Amyloid, Antimicrobial, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AUR12_RANRN _struct_ref.pdbx_db_accession P82387 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GLFDIIKKIAESF _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9RD7 T 1 ? 13 ? P82387 1 ? 13 ? 1 13 2 1 9RD7 V 1 ? 13 ? P82387 1 ? 13 ? 1 13 3 1 9RD7 R 1 ? 13 ? P82387 1 ? 13 ? 1 13 4 1 9RD7 X 1 ? 13 ? P82387 1 ? 13 ? 1 13 5 1 9RD7 L 1 ? 13 ? P82387 1 ? 13 ? 1 13 6 1 9RD7 N 1 ? 13 ? P82387 1 ? 13 ? 1 13 7 1 9RD7 J 1 ? 13 ? P82387 1 ? 13 ? 1 13 8 1 9RD7 P 1 ? 13 ? P82387 1 ? 13 ? 1 13 9 1 9RD7 D 1 ? 13 ? P82387 1 ? 13 ? 1 13 10 1 9RD7 F 1 ? 13 ? P82387 1 ? 13 ? 1 13 11 1 9RD7 B 1 ? 13 ? P82387 1 ? 13 ? 1 13 12 1 9RD7 H 1 ? 13 ? P82387 1 ? 13 ? 1 13 13 1 9RD7 S 1 ? 13 ? P82387 1 ? 13 ? 1 13 14 1 9RD7 U 1 ? 13 ? P82387 1 ? 13 ? 1 13 15 1 9RD7 Q 1 ? 13 ? P82387 1 ? 13 ? 1 13 16 1 9RD7 W 1 ? 13 ? P82387 1 ? 13 ? 1 13 17 1 9RD7 K 1 ? 13 ? P82387 1 ? 13 ? 1 13 18 1 9RD7 M 1 ? 13 ? P82387 1 ? 13 ? 1 13 19 1 9RD7 I 1 ? 13 ? P82387 1 ? 13 ? 1 13 20 1 9RD7 O 1 ? 13 ? P82387 1 ? 13 ? 1 13 21 1 9RD7 C 1 ? 13 ? P82387 1 ? 13 ? 1 13 22 1 9RD7 E 1 ? 13 ? P82387 1 ? 13 ? 1 13 23 1 9RD7 A 1 ? 13 ? P82387 1 ? 13 ? 1 13 24 1 9RD7 G 1 ? 13 ? P82387 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9RD7 NH2 T 14 ? UNP P82387 ? ? amidation 14 1 2 9RD7 NH2 V 14 ? UNP P82387 ? ? amidation 14 2 3 9RD7 NH2 R 14 ? UNP P82387 ? ? amidation 14 3 4 9RD7 NH2 X 14 ? UNP P82387 ? ? amidation 14 4 5 9RD7 NH2 L 14 ? UNP P82387 ? ? amidation 14 5 6 9RD7 NH2 N 14 ? UNP P82387 ? ? amidation 14 6 7 9RD7 NH2 J 14 ? UNP P82387 ? ? amidation 14 7 8 9RD7 NH2 P 14 ? UNP P82387 ? ? amidation 14 8 9 9RD7 NH2 D 14 ? UNP P82387 ? ? amidation 14 9 10 9RD7 NH2 F 14 ? UNP P82387 ? ? amidation 14 10 11 9RD7 NH2 B 14 ? UNP P82387 ? ? amidation 14 11 12 9RD7 NH2 H 14 ? UNP P82387 ? ? amidation 14 12 13 9RD7 NH2 S 14 ? UNP P82387 ? ? amidation 14 13 14 9RD7 NH2 U 14 ? UNP P82387 ? ? amidation 14 14 15 9RD7 NH2 Q 14 ? UNP P82387 ? ? amidation 14 15 16 9RD7 NH2 W 14 ? UNP P82387 ? ? amidation 14 16 17 9RD7 NH2 K 14 ? UNP P82387 ? ? amidation 14 17 18 9RD7 NH2 M 14 ? UNP P82387 ? ? amidation 14 18 19 9RD7 NH2 I 14 ? UNP P82387 ? ? amidation 14 19 20 9RD7 NH2 O 14 ? UNP P82387 ? ? amidation 14 20 21 9RD7 NH2 C 14 ? UNP P82387 ? ? amidation 14 21 22 9RD7 NH2 E 14 ? UNP P82387 ? ? amidation 14 22 23 9RD7 NH2 A 14 ? UNP P82387 ? ? amidation 14 23 24 9RD7 NH2 G 14 ? UNP P82387 ? ? amidation 14 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 13 C ? ? ? 1_555 A NH2 14 N ? ? T PHE 13 T NH2 14 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale both ? B PHE 13 C ? ? ? 1_555 B NH2 14 N ? ? V PHE 13 V NH2 14 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? C PHE 13 C ? ? ? 1_555 C NH2 14 N ? ? R PHE 13 R NH2 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? D PHE 13 C ? ? ? 1_555 D NH2 14 N ? ? X PHE 13 X NH2 14 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? E PHE 13 C ? ? ? 1_555 E NH2 14 N ? ? L PHE 13 L NH2 14 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale6 covale both ? F PHE 13 C ? ? ? 1_555 F NH2 14 N ? ? N PHE 13 N NH2 14 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale7 covale both ? G PHE 13 C ? ? ? 1_555 G NH2 14 N ? ? J PHE 13 J NH2 14 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? H PHE 13 C ? ? ? 1_555 H NH2 14 N ? ? P PHE 13 P NH2 14 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale9 covale both ? I PHE 13 C ? ? ? 1_555 I NH2 14 N ? ? D PHE 13 D NH2 14 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale10 covale both ? J PHE 13 C ? ? ? 1_555 J NH2 14 N ? ? F PHE 13 F NH2 14 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? K PHE 13 C ? ? ? 1_555 K NH2 14 N ? ? B PHE 13 B NH2 14 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale both ? L PHE 13 C ? ? ? 1_555 L NH2 14 N ? ? H PHE 13 H NH2 14 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale13 covale both ? M PHE 13 C ? ? ? 1_555 M NH2 14 N ? ? S PHE 13 S NH2 14 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale14 covale both ? N PHE 13 C ? ? ? 1_555 N NH2 14 N ? ? U PHE 13 U NH2 14 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale15 covale both ? O PHE 13 C ? ? ? 1_555 O NH2 14 N ? ? Q PHE 13 Q NH2 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? P PHE 13 C ? ? ? 1_555 P NH2 14 N ? ? W PHE 13 W NH2 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale17 covale both ? Q PHE 13 C ? ? ? 1_555 Q NH2 14 N ? ? K PHE 13 K NH2 14 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale18 covale both ? R PHE 13 C ? ? ? 1_555 R NH2 14 N ? ? M PHE 13 M NH2 14 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale19 covale both ? S PHE 13 C ? ? ? 1_555 S NH2 14 N ? ? I PHE 13 I NH2 14 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale20 covale both ? T PHE 13 C ? ? ? 1_555 T NH2 14 N ? ? O PHE 13 O NH2 14 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale21 covale both ? U PHE 13 C ? ? ? 1_555 U NH2 14 N ? ? C PHE 13 C NH2 14 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale22 covale both ? V PHE 13 C ? ? ? 1_555 V NH2 14 N ? ? E PHE 13 E NH2 14 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale23 covale both ? W PHE 13 C ? ? ? 1_555 W NH2 14 N ? ? A PHE 13 A NH2 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale24 covale both ? X PHE 13 C ? ? ? 1_555 X NH2 14 N ? ? G PHE 13 G NH2 14 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 14 ? PHE A 13 ? NH2 T 14 ? 1_555 PHE T 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 2 NH2 B 14 ? PHE B 13 ? NH2 V 14 ? 1_555 PHE V 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 3 NH2 C 14 ? PHE C 13 ? NH2 R 14 ? 1_555 PHE R 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 4 NH2 D 14 ? PHE D 13 ? NH2 X 14 ? 1_555 PHE X 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 5 NH2 E 14 ? PHE E 13 ? NH2 L 14 ? 1_555 PHE L 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 6 NH2 F 14 ? PHE F 13 ? NH2 N 14 ? 1_555 PHE N 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 7 NH2 G 14 ? PHE G 13 ? NH2 J 14 ? 1_555 PHE J 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 8 NH2 H 14 ? PHE H 13 ? NH2 P 14 ? 1_555 PHE P 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 9 NH2 I 14 ? PHE I 13 ? NH2 D 14 ? 1_555 PHE D 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 10 NH2 J 14 ? PHE J 13 ? NH2 F 14 ? 1_555 PHE F 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 11 NH2 K 14 ? PHE K 13 ? NH2 B 14 ? 1_555 PHE B 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 12 NH2 L 14 ? PHE L 13 ? NH2 H 14 ? 1_555 PHE H 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 13 NH2 M 14 ? PHE M 13 ? NH2 S 14 ? 1_555 PHE S 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 14 NH2 N 14 ? PHE N 13 ? NH2 U 14 ? 1_555 PHE U 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 15 NH2 O 14 ? PHE O 13 ? NH2 Q 14 ? 1_555 PHE Q 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 16 NH2 P 14 ? PHE P 13 ? NH2 W 14 ? 1_555 PHE W 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 17 NH2 Q 14 ? PHE Q 13 ? NH2 K 14 ? 1_555 PHE K 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 18 NH2 R 14 ? PHE R 13 ? NH2 M 14 ? 1_555 PHE M 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 19 NH2 S 14 ? PHE S 13 ? NH2 I 14 ? 1_555 PHE I 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 20 NH2 T 14 ? PHE T 13 ? NH2 O 14 ? 1_555 PHE O 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 21 NH2 U 14 ? PHE U 13 ? NH2 C 14 ? 1_555 PHE C 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 22 NH2 V 14 ? PHE V 13 ? NH2 E 14 ? 1_555 PHE E 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 23 NH2 W 14 ? PHE W 13 ? NH2 A 14 ? 1_555 PHE A 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 24 NH2 X 14 ? PHE X 13 ? NH2 G 14 ? 1_555 PHE G 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 2 ? ILE A 6 ? LEU T 2 ILE T 6 AA1 2 LEU I 2 ? ILE I 6 ? LEU D 2 ILE D 6 AA1 3 LEU E 2 ? ILE E 6 ? LEU L 2 ILE L 6 AA2 1 ILE A 9 ? SER A 12 ? ILE T 9 SER T 12 AA2 2 ILE I 9 ? SER I 12 ? ILE D 9 SER D 12 AA2 3 ILE E 9 ? SER E 12 ? ILE L 9 SER L 12 AA3 1 LEU B 2 ? GLU B 11 ? LEU V 2 GLU V 11 AA3 2 LEU J 2 ? GLU J 11 ? LEU F 2 GLU F 11 AA3 3 LEU F 2 ? GLU F 11 ? LEU N 2 GLU N 11 AA4 1 LEU C 2 ? SER C 12 ? LEU R 2 SER R 12 AA4 2 LEU K 2 ? SER K 12 ? LEU B 2 SER B 12 AA4 3 LEU G 2 ? SER G 12 ? LEU J 2 SER J 12 AA5 1 LEU D 2 ? SER D 12 ? LEU X 2 SER X 12 AA5 2 LEU L 2 ? SER L 12 ? LEU H 2 SER H 12 AA5 3 LEU H 2 ? SER H 12 ? LEU P 2 SER P 12 AA6 1 LEU M 2 ? ILE M 6 ? LEU S 2 ILE S 6 AA6 2 LEU U 2 ? ILE U 6 ? LEU C 2 ILE C 6 AA6 3 LEU Q 2 ? ILE Q 6 ? LEU K 2 ILE K 6 AA7 1 ILE M 9 ? SER M 12 ? ILE S 9 SER S 12 AA7 2 ILE U 9 ? SER U 12 ? ILE C 9 SER C 12 AA7 3 ILE Q 9 ? SER Q 12 ? ILE K 9 SER K 12 AA8 1 LEU N 2 ? GLU N 11 ? LEU U 2 GLU U 11 AA8 2 LEU V 2 ? GLU V 11 ? LEU E 2 GLU E 11 AA8 3 LEU R 2 ? GLU R 11 ? LEU M 2 GLU M 11 AA9 1 LEU O 2 ? SER O 12 ? LEU Q 2 SER Q 12 AA9 2 LEU W 2 ? SER W 12 ? LEU A 2 SER A 12 AA9 3 LEU S 2 ? SER S 12 ? LEU I 2 SER I 12 AB1 1 LEU P 2 ? SER P 12 ? LEU W 2 SER W 12 AB1 2 LEU X 2 ? SER X 12 ? LEU G 2 SER G 12 AB1 3 LEU T 2 ? SER T 12 ? LEU O 2 SER O 12 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 5 ? N ILE T 5 O ILE I 6 ? O ILE D 6 AA1 2 3 O ILE I 5 ? O ILE D 5 N ILE E 6 ? N ILE L 6 AA2 1 2 N ALA A 10 ? N ALA T 10 O GLU I 11 ? O GLU D 11 AA2 2 3 O ALA I 10 ? O ALA D 10 N GLU E 11 ? N GLU L 11 AA3 1 2 N ILE B 6 ? N ILE V 6 O LYS J 7 ? O LYS F 7 AA3 2 3 O LYS J 8 ? O LYS F 8 N ILE F 9 ? N ILE N 9 AA4 1 2 N LYS C 8 ? N LYS R 8 O LYS K 7 ? O LYS B 7 AA4 2 3 O LYS K 8 ? O LYS B 8 N LYS G 7 ? N LYS J 7 AA5 1 2 N ILE D 6 ? N ILE X 6 O ILE L 5 ? O ILE H 5 AA5 2 3 O ILE L 6 ? O ILE H 6 N ILE H 5 ? N ILE P 5 AA6 1 2 N ILE M 5 ? N ILE S 5 O ILE U 6 ? O ILE C 6 AA6 2 3 O ILE U 5 ? O ILE C 5 N ILE Q 6 ? N ILE K 6 AA7 1 2 N ALA M 10 ? N ALA S 10 O GLU U 11 ? O GLU C 11 AA7 2 3 O ALA U 10 ? O ALA C 10 N GLU Q 11 ? N GLU K 11 AA8 1 2 N ILE N 6 ? N ILE U 6 O LYS V 7 ? O LYS E 7 AA8 2 3 O LYS V 8 ? O LYS E 8 N ILE R 9 ? N ILE M 9 AA9 1 2 N LYS O 8 ? N LYS Q 8 O LYS W 7 ? O LYS A 7 AA9 2 3 O LYS W 8 ? O LYS A 8 N LYS S 7 ? N LYS I 7 AB1 1 2 N ILE P 6 ? N ILE W 6 O ILE X 5 ? O ILE G 5 AB1 2 3 O ILE X 6 ? O ILE G 6 N ILE T 5 ? N ILE O 5 # _pdbx_entry_details.entry_id 9RD7 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9RD7 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details 'De novo generated in Coot' _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name Other _em_3d_fitting_list.type other _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 9RD7 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 185612 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Aurein 1.2' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9RD7 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 3500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9RD7 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9RD7 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLU N N N N 30 GLU CA C N S 31 GLU C C N N 32 GLU O O N N 33 GLU CB C N N 34 GLU CG C N N 35 GLU CD C N N 36 GLU OE1 O N N 37 GLU OE2 O N N 38 GLU OXT O N N 39 GLU H H N N 40 GLU H2 H N N 41 GLU HA H N N 42 GLU HB2 H N N 43 GLU HB3 H N N 44 GLU HG2 H N N 45 GLU HG3 H N N 46 GLU HE2 H N N 47 GLU HXT H N N 48 GLY N N N N 49 GLY CA C N N 50 GLY C C N N 51 GLY O O N N 52 GLY OXT O N N 53 GLY H H N N 54 GLY H2 H N N 55 GLY HA2 H N N 56 GLY HA3 H N N 57 GLY HXT H N N 58 ILE N N N N 59 ILE CA C N S 60 ILE C C N N 61 ILE O O N N 62 ILE CB C N S 63 ILE CG1 C N N 64 ILE CG2 C N N 65 ILE CD1 C N N 66 ILE OXT O N N 67 ILE H H N N 68 ILE H2 H N N 69 ILE HA H N N 70 ILE HB H N N 71 ILE HG12 H N N 72 ILE HG13 H N N 73 ILE HG21 H N N 74 ILE HG22 H N N 75 ILE HG23 H N N 76 ILE HD11 H N N 77 ILE HD12 H N N 78 ILE HD13 H N N 79 ILE HXT H N N 80 LEU N N N N 81 LEU CA C N S 82 LEU C C N N 83 LEU O O N N 84 LEU CB C N N 85 LEU CG C N N 86 LEU CD1 C N N 87 LEU CD2 C N N 88 LEU OXT O N N 89 LEU H H N N 90 LEU H2 H N N 91 LEU HA H N N 92 LEU HB2 H N N 93 LEU HB3 H N N 94 LEU HG H N N 95 LEU HD11 H N N 96 LEU HD12 H N N 97 LEU HD13 H N N 98 LEU HD21 H N N 99 LEU HD22 H N N 100 LEU HD23 H N N 101 LEU HXT H N N 102 LYS N N N N 103 LYS CA C N S 104 LYS C C N N 105 LYS O O N N 106 LYS CB C N N 107 LYS CG C N N 108 LYS CD C N N 109 LYS CE C N N 110 LYS NZ N N N 111 LYS OXT O N N 112 LYS H H N N 113 LYS H2 H N N 114 LYS HA H N N 115 LYS HB2 H N N 116 LYS HB3 H N N 117 LYS HG2 H N N 118 LYS HG3 H N N 119 LYS HD2 H N N 120 LYS HD3 H N N 121 LYS HE2 H N N 122 LYS HE3 H N N 123 LYS HZ1 H N N 124 LYS HZ2 H N N 125 LYS HZ3 H N N 126 LYS HXT H N N 127 NH2 N N N N 128 NH2 HN1 H N N 129 NH2 HN2 H N N 130 PHE N N N N 131 PHE CA C N S 132 PHE C C N N 133 PHE O O N N 134 PHE CB C N N 135 PHE CG C Y N 136 PHE CD1 C Y N 137 PHE CD2 C Y N 138 PHE CE1 C Y N 139 PHE CE2 C Y N 140 PHE CZ C Y N 141 PHE OXT O N N 142 PHE H H N N 143 PHE H2 H N N 144 PHE HA H N N 145 PHE HB2 H N N 146 PHE HB3 H N N 147 PHE HD1 H N N 148 PHE HD2 H N N 149 PHE HE1 H N N 150 PHE HE2 H N N 151 PHE HZ H N N 152 PHE HXT H N N 153 SER N N N N 154 SER CA C N S 155 SER C C N N 156 SER O O N N 157 SER CB C N N 158 SER OG O N N 159 SER OXT O N N 160 SER H H N N 161 SER H2 H N N 162 SER HA H N N 163 SER HB2 H N N 164 SER HB3 H N N 165 SER HG H N N 166 SER HXT H N N 167 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLU N CA sing N N 28 GLU N H sing N N 29 GLU N H2 sing N N 30 GLU CA C sing N N 31 GLU CA CB sing N N 32 GLU CA HA sing N N 33 GLU C O doub N N 34 GLU C OXT sing N N 35 GLU CB CG sing N N 36 GLU CB HB2 sing N N 37 GLU CB HB3 sing N N 38 GLU CG CD sing N N 39 GLU CG HG2 sing N N 40 GLU CG HG3 sing N N 41 GLU CD OE1 doub N N 42 GLU CD OE2 sing N N 43 GLU OE2 HE2 sing N N 44 GLU OXT HXT sing N N 45 GLY N CA sing N N 46 GLY N H sing N N 47 GLY N H2 sing N N 48 GLY CA C sing N N 49 GLY CA HA2 sing N N 50 GLY CA HA3 sing N N 51 GLY C O doub N N 52 GLY C OXT sing N N 53 GLY OXT HXT sing N N 54 ILE N CA sing N N 55 ILE N H sing N N 56 ILE N H2 sing N N 57 ILE CA C sing N N 58 ILE CA CB sing N N 59 ILE CA HA sing N N 60 ILE C O doub N N 61 ILE C OXT sing N N 62 ILE CB CG1 sing N N 63 ILE CB CG2 sing N N 64 ILE CB HB sing N N 65 ILE CG1 CD1 sing N N 66 ILE CG1 HG12 sing N N 67 ILE CG1 HG13 sing N N 68 ILE CG2 HG21 sing N N 69 ILE CG2 HG22 sing N N 70 ILE CG2 HG23 sing N N 71 ILE CD1 HD11 sing N N 72 ILE CD1 HD12 sing N N 73 ILE CD1 HD13 sing N N 74 ILE OXT HXT sing N N 75 LEU N CA sing N N 76 LEU N H sing N N 77 LEU N H2 sing N N 78 LEU CA C sing N N 79 LEU CA CB sing N N 80 LEU CA HA sing N N 81 LEU C O doub N N 82 LEU C OXT sing N N 83 LEU CB CG sing N N 84 LEU CB HB2 sing N N 85 LEU CB HB3 sing N N 86 LEU CG CD1 sing N N 87 LEU CG CD2 sing N N 88 LEU CG HG sing N N 89 LEU CD1 HD11 sing N N 90 LEU CD1 HD12 sing N N 91 LEU CD1 HD13 sing N N 92 LEU CD2 HD21 sing N N 93 LEU CD2 HD22 sing N N 94 LEU CD2 HD23 sing N N 95 LEU OXT HXT sing N N 96 LYS N CA sing N N 97 LYS N H sing N N 98 LYS N H2 sing N N 99 LYS CA C sing N N 100 LYS CA CB sing N N 101 LYS CA HA sing N N 102 LYS C O doub N N 103 LYS C OXT sing N N 104 LYS CB CG sing N N 105 LYS CB HB2 sing N N 106 LYS CB HB3 sing N N 107 LYS CG CD sing N N 108 LYS CG HG2 sing N N 109 LYS CG HG3 sing N N 110 LYS CD CE sing N N 111 LYS CD HD2 sing N N 112 LYS CD HD3 sing N N 113 LYS CE NZ sing N N 114 LYS CE HE2 sing N N 115 LYS CE HE3 sing N N 116 LYS NZ HZ1 sing N N 117 LYS NZ HZ2 sing N N 118 LYS NZ HZ3 sing N N 119 LYS OXT HXT sing N N 120 NH2 N HN1 sing N N 121 NH2 N HN2 sing N N 122 PHE N CA sing N N 123 PHE N H sing N N 124 PHE N H2 sing N N 125 PHE CA C sing N N 126 PHE CA CB sing N N 127 PHE CA HA sing N N 128 PHE C O doub N N 129 PHE C OXT sing N N 130 PHE CB CG sing N N 131 PHE CB HB2 sing N N 132 PHE CB HB3 sing N N 133 PHE CG CD1 doub Y N 134 PHE CG CD2 sing Y N 135 PHE CD1 CE1 sing Y N 136 PHE CD1 HD1 sing N N 137 PHE CD2 CE2 doub Y N 138 PHE CD2 HD2 sing N N 139 PHE CE1 CZ doub Y N 140 PHE CE1 HE1 sing N N 141 PHE CE2 CZ sing Y N 142 PHE CE2 HE2 sing N N 143 PHE CZ HZ sing N N 144 PHE OXT HXT sing N N 145 SER N CA sing N N 146 SER N H sing N N 147 SER N H2 sing N N 148 SER CA C sing N N 149 SER CA CB sing N N 150 SER CA HA sing N N 151 SER C O doub N N 152 SER C OXT sing N N 153 SER CB OG sing N N 154 SER CB HB2 sing N N 155 SER CB HB3 sing N N 156 SER OG HG sing N N 157 SER OXT HXT sing N N 158 # _em_admin.current_status REL _em_admin.deposition_date 2025-06-02 _em_admin.deposition_site PDBE _em_admin.entry_id 9RD7 _em_admin.last_update 2026-08-26 _em_admin.map_release_date 2026-08-26 _em_admin.title 'Cryo-EM structure of amyloidogenic antimicrobial peptide Aurein 1.2 polymorph 1 in acqueous solution' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 8371 _em_entity_assembly_naturalsource.organism 'Ranoidea aurea' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -1.17 _em_helical_entity.axial_rise_per_subunit 4.84 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1418345 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? crYOLO ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.92 ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? Servalcat ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4 ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 4 ? CLASSIFICATION ? 12 1 ? ? RELION 4 ? RECONSTRUCTION ? 13 1 ? ? RELION 4 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details 'This sample was fibrillated in aqueous buffer' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council (ERC)' 'European Union' 101087140 1 'Israel Science Foundation' Israel 2111/20 2 'Volkswagen Foundation' Germany '76251-4659/2022 (ZN 4042)' 3 'German Research Foundation (DFG)' Germany 152/772-1 4 'German Research Foundation (DFG)' Germany 152/774-1 5 'German Research Foundation (DFG)' Germany 152/775-1 6 'German Research Foundation (DFG)' Germany 152/776-1 7 'German Research Foundation (DFG)' Germany '152/777-1 FUGG' 8 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9RD7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ #