data_9RFV # _entry.id 9RFV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9RFV pdb_00009rfv 10.2210/pdb9rfv/pdb WWPDB D_1292148156 ? ? EMDB EMD-53942 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-08-26 ? 2 'EM metadata' 1 0 2026-08-26 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9RFV _pdbx_database_status.recvd_initial_deposition_date 2025-06-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of amyloidogenic antimicrobial peptide aurein 1.2 polymorph 2 in aqueous solution' _pdbx_database_related.db_id EMD-53942 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email meytal.landau@cssb-hamburg.de _pdbx_contact_author.name_first Meytal _pdbx_contact_author.name_last Landau _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1743-3430 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ragonis-Bachar, P.' 1 ? 'Strati, F.' 2 ? 'Gustavsson, E.' 3 ? 'Khokhlov, A.' 4 ? 'Barnea, E.' 5 ? 'Rayan, B.' 6 ? 'Upchr, A.' 7 ? 'Landau, M.' 8 ? 'Banerjee, S.' 9 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Amyloidogenic Nature and Structural Polymorphism of Antimicrobial, Virulent and Defense Peptides' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ragonis-Bachar, P.' 1 ? primary 'Strati, F.' 2 ? primary 'Gustavsson, E.' 3 ? primary 'Khokhlov, A.' 4 ? primary 'Barnea, E.' 5 ? primary 'Rayan, B.' 6 ? primary 'Upchr, A.' 7 ? primary 'Landau, M.' 8 ? primary 'Banerjee, S.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Aurein-1.2 1163.387 9 ? ? ? ? 2 polymer man Aurein-1.2 1310.561 3 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes 'DIIKKIAESF(NH2)' DIIKKIAESFX A,C,D,E,G,H,I,K,L ? 2 'polypeptide(L)' no yes 'FDIIKKIAESF(NH2)' FDIIKKIAESFX B,F,J ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 ILE n 1 4 LYS n 1 5 LYS n 1 6 ILE n 1 7 ALA n 1 8 GLU n 1 9 SER n 1 10 PHE n 1 11 NH2 n 2 1 PHE n 2 2 ASP n 2 3 ILE n 2 4 ILE n 2 5 LYS n 2 6 LYS n 2 7 ILE n 2 8 ALA n 2 9 GLU n 2 10 SER n 2 11 PHE n 2 12 NH2 n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 11 'green and golden bell frog' ? ? ? ? ? ? ? ? 'Ranoidea aurea' 8371 ? ? ? ? ? ? ? ? 'Ranoidea aurea' 8371 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 12 'green and golden bell frog' ? ? ? ? ? ? ? ? 'Ranoidea aurea' 8371 ? ? ? ? ? ? ? ? 'Ranoidea aurea' 8371 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 4 4 ASP ASP A . n A 1 2 ILE 2 5 5 ILE ILE A . n A 1 3 ILE 3 6 6 ILE ILE A . n A 1 4 LYS 4 7 7 LYS LYS A . n A 1 5 LYS 5 8 8 LYS LYS A . n A 1 6 ILE 6 9 9 ILE ILE A . n A 1 7 ALA 7 10 10 ALA ALA A . n A 1 8 GLU 8 11 11 GLU GLU A . n A 1 9 SER 9 12 12 SER SER A . n A 1 10 PHE 10 13 13 PHE PHE A . n A 1 11 NH2 11 14 14 NH2 NH2 A . n B 2 1 PHE 1 3 3 PHE PHE B . n B 2 2 ASP 2 4 4 ASP ASP B . n B 2 3 ILE 3 5 5 ILE ILE B . n B 2 4 ILE 4 6 6 ILE ILE B . n B 2 5 LYS 5 7 7 LYS LYS B . n B 2 6 LYS 6 8 8 LYS LYS B . n B 2 7 ILE 7 9 9 ILE ILE B . n B 2 8 ALA 8 10 10 ALA ALA B . n B 2 9 GLU 9 11 11 GLU GLU B . n B 2 10 SER 10 12 12 SER SER B . n B 2 11 PHE 11 13 13 PHE PHE B . n B 2 12 NH2 12 14 14 NH2 NH2 B . n C 1 1 ASP 1 4 4 ASP ASP C . n C 1 2 ILE 2 5 5 ILE ILE C . n C 1 3 ILE 3 6 6 ILE ILE C . n C 1 4 LYS 4 7 7 LYS LYS C . n C 1 5 LYS 5 8 8 LYS LYS C . n C 1 6 ILE 6 9 9 ILE ILE C . n C 1 7 ALA 7 10 10 ALA ALA C . n C 1 8 GLU 8 11 11 GLU GLU C . n C 1 9 SER 9 12 12 SER SER C . n C 1 10 PHE 10 13 13 PHE PHE C . n C 1 11 NH2 11 14 14 NH2 NH2 C . n D 1 1 ASP 1 4 4 ASP ASP D . n D 1 2 ILE 2 5 5 ILE ILE D . n D 1 3 ILE 3 6 6 ILE ILE D . n D 1 4 LYS 4 7 7 LYS LYS D . n D 1 5 LYS 5 8 8 LYS LYS D . n D 1 6 ILE 6 9 9 ILE ILE D . n D 1 7 ALA 7 10 10 ALA ALA D . n D 1 8 GLU 8 11 11 GLU GLU D . n D 1 9 SER 9 12 12 SER SER D . n D 1 10 PHE 10 13 13 PHE PHE D . n D 1 11 NH2 11 14 14 NH2 NH2 D . n E 1 1 ASP 1 4 4 ASP ASP E . n E 1 2 ILE 2 5 5 ILE ILE E . n E 1 3 ILE 3 6 6 ILE ILE E . n E 1 4 LYS 4 7 7 LYS LYS E . n E 1 5 LYS 5 8 8 LYS LYS E . n E 1 6 ILE 6 9 9 ILE ILE E . n E 1 7 ALA 7 10 10 ALA ALA E . n E 1 8 GLU 8 11 11 GLU GLU E . n E 1 9 SER 9 12 12 SER SER E . n E 1 10 PHE 10 13 13 PHE PHE E . n E 1 11 NH2 11 14 14 NH2 NH2 E . n F 2 1 PHE 1 3 3 PHE PHE F . n F 2 2 ASP 2 4 4 ASP ASP F . n F 2 3 ILE 3 5 5 ILE ILE F . n F 2 4 ILE 4 6 6 ILE ILE F . n F 2 5 LYS 5 7 7 LYS LYS F . n F 2 6 LYS 6 8 8 LYS LYS F . n F 2 7 ILE 7 9 9 ILE ILE F . n F 2 8 ALA 8 10 10 ALA ALA F . n F 2 9 GLU 9 11 11 GLU GLU F . n F 2 10 SER 10 12 12 SER SER F . n F 2 11 PHE 11 13 13 PHE PHE F . n F 2 12 NH2 12 14 14 NH2 NH2 F . n G 1 1 ASP 1 4 4 ASP ASP G . n G 1 2 ILE 2 5 5 ILE ILE G . n G 1 3 ILE 3 6 6 ILE ILE G . n G 1 4 LYS 4 7 7 LYS LYS G . n G 1 5 LYS 5 8 8 LYS LYS G . n G 1 6 ILE 6 9 9 ILE ILE G . n G 1 7 ALA 7 10 10 ALA ALA G . n G 1 8 GLU 8 11 11 GLU GLU G . n G 1 9 SER 9 12 12 SER SER G . n G 1 10 PHE 10 13 13 PHE PHE G . n G 1 11 NH2 11 14 14 NH2 NH2 G . n H 1 1 ASP 1 4 4 ASP ASP H . n H 1 2 ILE 2 5 5 ILE ILE H . n H 1 3 ILE 3 6 6 ILE ILE H . n H 1 4 LYS 4 7 7 LYS LYS H . n H 1 5 LYS 5 8 8 LYS LYS H . n H 1 6 ILE 6 9 9 ILE ILE H . n H 1 7 ALA 7 10 10 ALA ALA H . n H 1 8 GLU 8 11 11 GLU GLU H . n H 1 9 SER 9 12 12 SER SER H . n H 1 10 PHE 10 13 13 PHE PHE H . n H 1 11 NH2 11 14 14 NH2 NH2 H . n I 1 1 ASP 1 4 4 ASP ASP I . n I 1 2 ILE 2 5 5 ILE ILE I . n I 1 3 ILE 3 6 6 ILE ILE I . n I 1 4 LYS 4 7 7 LYS LYS I . n I 1 5 LYS 5 8 8 LYS LYS I . n I 1 6 ILE 6 9 9 ILE ILE I . n I 1 7 ALA 7 10 10 ALA ALA I . n I 1 8 GLU 8 11 11 GLU GLU I . n I 1 9 SER 9 12 12 SER SER I . n I 1 10 PHE 10 13 13 PHE PHE I . n I 1 11 NH2 11 14 14 NH2 NH2 I . n J 2 1 PHE 1 3 3 PHE PHE J . n J 2 2 ASP 2 4 4 ASP ASP J . n J 2 3 ILE 3 5 5 ILE ILE J . n J 2 4 ILE 4 6 6 ILE ILE J . n J 2 5 LYS 5 7 7 LYS LYS J . n J 2 6 LYS 6 8 8 LYS LYS J . n J 2 7 ILE 7 9 9 ILE ILE J . n J 2 8 ALA 8 10 10 ALA ALA J . n J 2 9 GLU 9 11 11 GLU GLU J . n J 2 10 SER 10 12 12 SER SER J . n J 2 11 PHE 11 13 13 PHE PHE J . n J 2 12 NH2 12 14 14 NH2 NH2 J . n K 1 1 ASP 1 4 4 ASP ASP K . n K 1 2 ILE 2 5 5 ILE ILE K . n K 1 3 ILE 3 6 6 ILE ILE K . n K 1 4 LYS 4 7 7 LYS LYS K . n K 1 5 LYS 5 8 8 LYS LYS K . n K 1 6 ILE 6 9 9 ILE ILE K . n K 1 7 ALA 7 10 10 ALA ALA K . n K 1 8 GLU 8 11 11 GLU GLU K . n K 1 9 SER 9 12 12 SER SER K . n K 1 10 PHE 10 13 13 PHE PHE K . n K 1 11 NH2 11 14 14 NH2 NH2 K . n L 1 1 ASP 1 4 4 ASP ASP L . n L 1 2 ILE 2 5 5 ILE ILE L . n L 1 3 ILE 3 6 6 ILE ILE L . n L 1 4 LYS 4 7 7 LYS LYS L . n L 1 5 LYS 5 8 8 LYS LYS L . n L 1 6 ILE 6 9 9 ILE ILE L . n L 1 7 ALA 7 10 10 ALA ALA L . n L 1 8 GLU 8 11 11 GLU GLU L . n L 1 9 SER 9 12 12 SER SER L . n L 1 10 PHE 10 13 13 PHE PHE L . n L 1 11 NH2 11 14 14 NH2 NH2 L . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9RFV _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9RFV _struct.title 'Cryo-EM structure of amyloidogenic antimicrobial peptide aurein 1.2 polymorph 2 in aqueous solution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9RFV _struct_keywords.text 'Amyloid, Antimicrobial, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 2 ? K N N 1 ? L N N 1 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP AUR12_RANRN P82387 ? 1 DIIKKIAESF 4 2 UNP AUR12_RANRN P82387 ? 2 FDIIKKIAESF 3 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9RFV A 1 ? 10 ? P82387 4 ? 13 ? 4 13 2 2 9RFV B 1 ? 11 ? P82387 3 ? 13 ? 3 13 3 1 9RFV C 1 ? 10 ? P82387 4 ? 13 ? 4 13 4 1 9RFV D 1 ? 10 ? P82387 4 ? 13 ? 4 13 5 1 9RFV E 1 ? 10 ? P82387 4 ? 13 ? 4 13 6 2 9RFV F 1 ? 11 ? P82387 3 ? 13 ? 3 13 7 1 9RFV G 1 ? 10 ? P82387 4 ? 13 ? 4 13 8 1 9RFV H 1 ? 10 ? P82387 4 ? 13 ? 4 13 9 1 9RFV I 1 ? 10 ? P82387 4 ? 13 ? 4 13 10 2 9RFV J 1 ? 11 ? P82387 3 ? 13 ? 3 13 11 1 9RFV K 1 ? 10 ? P82387 4 ? 13 ? 4 13 12 1 9RFV L 1 ? 10 ? P82387 4 ? 13 ? 4 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9RFV NH2 A 11 ? UNP P82387 ? ? amidation 14 1 2 9RFV NH2 B 12 ? UNP P82387 ? ? amidation 14 2 3 9RFV NH2 C 11 ? UNP P82387 ? ? amidation 14 3 4 9RFV NH2 D 11 ? UNP P82387 ? ? amidation 14 4 5 9RFV NH2 E 11 ? UNP P82387 ? ? amidation 14 5 6 9RFV NH2 F 12 ? UNP P82387 ? ? amidation 14 6 7 9RFV NH2 G 11 ? UNP P82387 ? ? amidation 14 7 8 9RFV NH2 H 11 ? UNP P82387 ? ? amidation 14 8 9 9RFV NH2 I 11 ? UNP P82387 ? ? amidation 14 9 10 9RFV NH2 J 12 ? UNP P82387 ? ? amidation 14 10 11 9RFV NH2 K 11 ? UNP P82387 ? ? amidation 14 11 12 9RFV NH2 L 11 ? UNP P82387 ? ? amidation 14 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 10 C ? ? ? 1_555 A NH2 11 N ? ? A PHE 13 A NH2 14 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale2 covale both ? B PHE 11 C ? ? ? 1_555 B NH2 12 N ? ? B PHE 13 B NH2 14 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale3 covale both ? C PHE 10 C ? ? ? 1_555 C NH2 11 N ? ? C PHE 13 C NH2 14 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale4 covale both ? D PHE 10 C ? ? ? 1_555 D NH2 11 N ? ? D PHE 13 D NH2 14 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale5 covale both ? E PHE 10 C ? ? ? 1_555 E NH2 11 N ? ? E PHE 13 E NH2 14 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale6 covale both ? F PHE 11 C ? ? ? 1_555 F NH2 12 N ? ? F PHE 13 F NH2 14 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale7 covale both ? G PHE 10 C ? ? ? 1_555 G NH2 11 N ? ? G PHE 13 G NH2 14 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale8 covale both ? H PHE 10 C ? ? ? 1_555 H NH2 11 N ? ? H PHE 13 H NH2 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? I PHE 10 C ? ? ? 1_555 I NH2 11 N ? ? I PHE 13 I NH2 14 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? J PHE 11 C ? ? ? 1_555 J NH2 12 N ? ? J PHE 13 J NH2 14 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale11 covale both ? K PHE 10 C ? ? ? 1_555 K NH2 11 N ? ? K PHE 13 K NH2 14 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? L PHE 10 C ? ? ? 1_555 L NH2 11 N ? ? L PHE 13 L NH2 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 11 ? PHE A 10 ? NH2 A 14 ? 1_555 PHE A 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 2 NH2 B 12 ? PHE B 11 ? NH2 B 14 ? 1_555 PHE B 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 3 NH2 C 11 ? PHE C 10 ? NH2 C 14 ? 1_555 PHE C 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 4 NH2 D 11 ? PHE D 10 ? NH2 D 14 ? 1_555 PHE D 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 5 NH2 E 11 ? PHE E 10 ? NH2 E 14 ? 1_555 PHE E 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 6 NH2 F 12 ? PHE F 11 ? NH2 F 14 ? 1_555 PHE F 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 7 NH2 G 11 ? PHE G 10 ? NH2 G 14 ? 1_555 PHE G 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 8 NH2 H 11 ? PHE H 10 ? NH2 H 14 ? 1_555 PHE H 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 9 NH2 I 11 ? PHE I 10 ? NH2 I 14 ? 1_555 PHE I 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 10 NH2 J 12 ? PHE J 11 ? NH2 J 14 ? 1_555 PHE J 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 11 NH2 K 11 ? PHE K 10 ? NH2 K 14 ? 1_555 PHE K 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' 12 NH2 L 11 ? PHE L 10 ? NH2 L 14 ? 1_555 PHE L 13 ? 1_555 . . PHE 15 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP F 2 ? LYS F 5 ? ASP F 4 LYS F 7 AA1 2 ASP B 2 ? LYS B 5 ? ASP B 4 LYS B 7 AA1 3 ASP J 2 ? LYS J 5 ? ASP J 4 LYS J 7 AA2 1 ILE G 2 ? ALA G 7 ? ILE G 5 ALA G 10 AA2 2 ILE C 2 ? ALA C 7 ? ILE C 5 ALA C 10 AA2 3 ILE K 2 ? LYS K 5 ? ILE K 5 LYS K 8 AA3 1 ILE H 2 ? ILE H 6 ? ILE H 5 ILE H 9 AA3 2 ILE D 2 ? ILE D 6 ? ILE D 5 ILE D 9 AA3 3 ILE L 2 ? ILE L 6 ? ILE L 5 ILE L 9 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE F 4 ? O ILE F 6 N ILE B 3 ? N ILE B 5 AA1 2 3 N ILE B 4 ? N ILE B 6 O ILE J 3 ? O ILE J 5 AA2 1 2 O LYS G 5 ? O LYS G 8 N ILE C 6 ? N ILE C 9 AA2 2 3 N LYS C 5 ? N LYS C 8 O LYS K 4 ? O LYS K 7 AA3 1 2 O LYS H 5 ? O LYS H 8 N ILE D 6 ? N ILE D 9 AA3 2 3 N LYS D 5 ? N LYS D 8 O LYS L 4 ? O LYS L 7 # _pdbx_entry_details.entry_id 9RFV _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 8 ? ? -135.41 -74.81 2 1 GLU B 11 ? ? -151.01 43.84 3 1 LYS E 8 ? ? -143.45 -46.10 4 1 LYS F 8 ? ? -85.69 45.78 5 1 GLU F 11 ? ? -156.12 32.24 6 1 LYS I 8 ? ? -133.17 -53.89 7 1 LYS J 8 ? ? -88.38 34.47 8 1 GLU J 11 ? ? -149.69 29.44 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9RFV _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details 'De novo generated in Coot' _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name Other _em_3d_fitting_list.type other _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 9RFV _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.78 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 90810 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 5.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Aurein 1.2' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9RFV _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 3500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9RFV _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9RFV _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLU N N N N 30 GLU CA C N S 31 GLU C C N N 32 GLU O O N N 33 GLU CB C N N 34 GLU CG C N N 35 GLU CD C N N 36 GLU OE1 O N N 37 GLU OE2 O N N 38 GLU OXT O N N 39 GLU H H N N 40 GLU H2 H N N 41 GLU HA H N N 42 GLU HB2 H N N 43 GLU HB3 H N N 44 GLU HG2 H N N 45 GLU HG3 H N N 46 GLU HE2 H N N 47 GLU HXT H N N 48 ILE N N N N 49 ILE CA C N S 50 ILE C C N N 51 ILE O O N N 52 ILE CB C N S 53 ILE CG1 C N N 54 ILE CG2 C N N 55 ILE CD1 C N N 56 ILE OXT O N N 57 ILE H H N N 58 ILE H2 H N N 59 ILE HA H N N 60 ILE HB H N N 61 ILE HG12 H N N 62 ILE HG13 H N N 63 ILE HG21 H N N 64 ILE HG22 H N N 65 ILE HG23 H N N 66 ILE HD11 H N N 67 ILE HD12 H N N 68 ILE HD13 H N N 69 ILE HXT H N N 70 LYS N N N N 71 LYS CA C N S 72 LYS C C N N 73 LYS O O N N 74 LYS CB C N N 75 LYS CG C N N 76 LYS CD C N N 77 LYS CE C N N 78 LYS NZ N N N 79 LYS OXT O N N 80 LYS H H N N 81 LYS H2 H N N 82 LYS HA H N N 83 LYS HB2 H N N 84 LYS HB3 H N N 85 LYS HG2 H N N 86 LYS HG3 H N N 87 LYS HD2 H N N 88 LYS HD3 H N N 89 LYS HE2 H N N 90 LYS HE3 H N N 91 LYS HZ1 H N N 92 LYS HZ2 H N N 93 LYS HZ3 H N N 94 LYS HXT H N N 95 NH2 N N N N 96 NH2 HN1 H N N 97 NH2 HN2 H N N 98 PHE N N N N 99 PHE CA C N S 100 PHE C C N N 101 PHE O O N N 102 PHE CB C N N 103 PHE CG C Y N 104 PHE CD1 C Y N 105 PHE CD2 C Y N 106 PHE CE1 C Y N 107 PHE CE2 C Y N 108 PHE CZ C Y N 109 PHE OXT O N N 110 PHE H H N N 111 PHE H2 H N N 112 PHE HA H N N 113 PHE HB2 H N N 114 PHE HB3 H N N 115 PHE HD1 H N N 116 PHE HD2 H N N 117 PHE HE1 H N N 118 PHE HE2 H N N 119 PHE HZ H N N 120 PHE HXT H N N 121 SER N N N N 122 SER CA C N S 123 SER C C N N 124 SER O O N N 125 SER CB C N N 126 SER OG O N N 127 SER OXT O N N 128 SER H H N N 129 SER H2 H N N 130 SER HA H N N 131 SER HB2 H N N 132 SER HB3 H N N 133 SER HG H N N 134 SER HXT H N N 135 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLU N CA sing N N 28 GLU N H sing N N 29 GLU N H2 sing N N 30 GLU CA C sing N N 31 GLU CA CB sing N N 32 GLU CA HA sing N N 33 GLU C O doub N N 34 GLU C OXT sing N N 35 GLU CB CG sing N N 36 GLU CB HB2 sing N N 37 GLU CB HB3 sing N N 38 GLU CG CD sing N N 39 GLU CG HG2 sing N N 40 GLU CG HG3 sing N N 41 GLU CD OE1 doub N N 42 GLU CD OE2 sing N N 43 GLU OE2 HE2 sing N N 44 GLU OXT HXT sing N N 45 ILE N CA sing N N 46 ILE N H sing N N 47 ILE N H2 sing N N 48 ILE CA C sing N N 49 ILE CA CB sing N N 50 ILE CA HA sing N N 51 ILE C O doub N N 52 ILE C OXT sing N N 53 ILE CB CG1 sing N N 54 ILE CB CG2 sing N N 55 ILE CB HB sing N N 56 ILE CG1 CD1 sing N N 57 ILE CG1 HG12 sing N N 58 ILE CG1 HG13 sing N N 59 ILE CG2 HG21 sing N N 60 ILE CG2 HG22 sing N N 61 ILE CG2 HG23 sing N N 62 ILE CD1 HD11 sing N N 63 ILE CD1 HD12 sing N N 64 ILE CD1 HD13 sing N N 65 ILE OXT HXT sing N N 66 LYS N CA sing N N 67 LYS N H sing N N 68 LYS N H2 sing N N 69 LYS CA C sing N N 70 LYS CA CB sing N N 71 LYS CA HA sing N N 72 LYS C O doub N N 73 LYS C OXT sing N N 74 LYS CB CG sing N N 75 LYS CB HB2 sing N N 76 LYS CB HB3 sing N N 77 LYS CG CD sing N N 78 LYS CG HG2 sing N N 79 LYS CG HG3 sing N N 80 LYS CD CE sing N N 81 LYS CD HD2 sing N N 82 LYS CD HD3 sing N N 83 LYS CE NZ sing N N 84 LYS CE HE2 sing N N 85 LYS CE HE3 sing N N 86 LYS NZ HZ1 sing N N 87 LYS NZ HZ2 sing N N 88 LYS NZ HZ3 sing N N 89 LYS OXT HXT sing N N 90 NH2 N HN1 sing N N 91 NH2 N HN2 sing N N 92 PHE N CA sing N N 93 PHE N H sing N N 94 PHE N H2 sing N N 95 PHE CA C sing N N 96 PHE CA CB sing N N 97 PHE CA HA sing N N 98 PHE C O doub N N 99 PHE C OXT sing N N 100 PHE CB CG sing N N 101 PHE CB HB2 sing N N 102 PHE CB HB3 sing N N 103 PHE CG CD1 doub Y N 104 PHE CG CD2 sing Y N 105 PHE CD1 CE1 sing Y N 106 PHE CD1 HD1 sing N N 107 PHE CD2 CE2 doub Y N 108 PHE CD2 HD2 sing N N 109 PHE CE1 CZ doub Y N 110 PHE CE1 HE1 sing N N 111 PHE CE2 CZ sing Y N 112 PHE CE2 HE2 sing N N 113 PHE CZ HZ sing N N 114 PHE OXT HXT sing N N 115 SER N CA sing N N 116 SER N H sing N N 117 SER N H2 sing N N 118 SER CA C sing N N 119 SER CA CB sing N N 120 SER CA HA sing N N 121 SER C O doub N N 122 SER C OXT sing N N 123 SER CB OG sing N N 124 SER CB HB2 sing N N 125 SER CB HB3 sing N N 126 SER OG HG sing N N 127 SER OXT HXT sing N N 128 # _em_admin.current_status REL _em_admin.deposition_date 2025-06-05 _em_admin.deposition_site PDBE _em_admin.entry_id 9RFV _em_admin.last_update 2026-08-26 _em_admin.map_release_date 2026-08-26 _em_admin.title 'Cryo-EM structure of amyloidogenic antimicrobial peptide aurein 1.2 polymorph 2 in aqueous solution' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 8371 _em_entity_assembly_naturalsource.organism 'Ranoidea aurea' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -2.40 _em_helical_entity.axial_rise_per_subunit 4.84 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 131027 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.92 ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? Servalcat ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4 ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 4 ? CLASSIFICATION ? 12 1 ? ? RELION 4 ? RECONSTRUCTION ? 13 1 ? ? RELION 4 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details 'This sample was fibrillated in aqueous solution' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council (ERC)' 'European Union' 101087140 1 'Israel Science Foundation' Israel 2111/20 2 'Volkswagen Foundation' Germany '76251-4659/2022 (ZN 4042)' 3 'German Research Foundation (DFG)' Germany 152/772-1 4 'German Research Foundation (DFG)' Germany 152/774-1 5 'German Research Foundation (DFG)' Germany 152/775-1 6 'German Research Foundation (DFG)' Germany 152/776-1 7 'German Research Foundation (DFG)' Germany '152/777-1 FUGG' 8 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9RFV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ #