HEADER TRANSPORT PROTEIN 06-JUN-25 9RGK TITLE HUMAN TRANSTHYRETIN I107V MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATTR,PREALBUMIN,TBPA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THE FIRST TWO RESIDUES (GS) ARE CLONING ATREFACTS ARE COMPND 8 FOLLOWED BY THE SEQUENCE OF THE MATURE HUMAN TRANSTHYRETIN PROTEIN COMPND 9 CONTAINING I107V MUTATION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS TETRAMER DESTABILIZATION, AMYLOIDOSIS, ATTR, MUTANT, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.BODY,V.HARMAT,A.J.KISS-SZEMAN,Z.FAZEKAS,N.WAGNER,Z.POZSONYI, AUTHOR 2 D.K.MENYHARD,A.PERCZEL REVDAT 2 25-MAR-26 9RGK 1 JRNL REVDAT 1 18-MAR-26 9RGK 0 JRNL AUTH I.L.BODY,Z.FAZEKAS,N.WAGNER,A.J.KISS-SZEMAN,V.HARMAT, JRNL AUTH 2 Z.POZSONYI,D.K.MENYHARD,A.PERCZEL JRNL TITL INVESTIGATING TRANSTHYRETIN VARIANTS H88R AND I107V IN JRNL TITL 2 AMYLOID PRIMING: FROM DESTABILIZATION TO COMPLETE JRNL TITL 3 DISSOCIATION. JRNL REF FEBS J. 2026 JRNL REFN ISSN 1742-464X JRNL PMID 41830400 JRNL DOI 10.1111/FEBS.70485 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 25678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7200 - 3.5300 0.98 2958 125 0.1730 0.1871 REMARK 3 2 3.5300 - 2.8000 0.99 2781 160 0.1665 0.1932 REMARK 3 3 2.8000 - 2.4500 0.99 2766 144 0.1839 0.2228 REMARK 3 4 2.4500 - 2.2300 0.98 2732 148 0.1799 0.2407 REMARK 3 5 2.2300 - 2.0700 0.98 2720 155 0.1717 0.2102 REMARK 3 6 2.0700 - 1.9500 0.97 2664 149 0.1986 0.2283 REMARK 3 7 1.9500 - 1.8500 0.95 2624 153 0.2353 0.2644 REMARK 3 8 1.8500 - 1.7700 0.95 2595 147 0.2596 0.2788 REMARK 3 9 1.7700 - 1.7000 0.92 2541 116 0.3468 0.3664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.194 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.715 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1848 REMARK 3 ANGLE : 0.853 2545 REMARK 3 CHIRALITY : 0.059 296 REMARK 3 PLANARITY : 0.007 328 REMARK 3 DIHEDRAL : 11.878 639 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4519 19.1356 2.7495 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.1161 REMARK 3 T33: 0.1516 T12: -0.0299 REMARK 3 T13: 0.0020 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 4.5262 L22: 3.0134 REMARK 3 L33: 1.0108 L12: 1.6089 REMARK 3 L13: 0.4028 L23: -0.8753 REMARK 3 S TENSOR REMARK 3 S11: -0.2351 S12: 0.0766 S13: 0.2610 REMARK 3 S21: -0.2163 S22: 0.0809 S23: -0.0141 REMARK 3 S31: 0.1550 S32: 0.2539 S33: 0.1625 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4510 8.7324 11.5396 REMARK 3 T TENSOR REMARK 3 T11: 0.1083 T22: 0.1283 REMARK 3 T33: 0.2878 T12: -0.0184 REMARK 3 T13: 0.0446 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 6.1537 L22: 4.2727 REMARK 3 L33: 6.3970 L12: -1.7696 REMARK 3 L13: -2.8881 L23: -1.8100 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: 0.0784 S13: 0.4309 REMARK 3 S21: 0.3147 S22: -0.3066 S23: 1.1034 REMARK 3 S31: -0.0236 S32: -0.4464 S33: 0.0693 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4947 10.4915 17.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.1634 T22: 0.1633 REMARK 3 T33: 0.2882 T12: -0.0494 REMARK 3 T13: 0.1590 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 3.0983 L22: 2.1429 REMARK 3 L33: 5.6187 L12: 0.6319 REMARK 3 L13: 3.8098 L23: -0.6248 REMARK 3 S TENSOR REMARK 3 S11: -0.4188 S12: -0.0058 S13: -0.5944 REMARK 3 S21: 1.0752 S22: 0.2815 S23: 0.6730 REMARK 3 S31: -0.3526 S32: -0.3645 S33: 0.2298 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1293 15.9995 10.4585 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1667 REMARK 3 T33: 0.1603 T12: -0.0094 REMARK 3 T13: 0.0353 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.3297 L22: 2.8171 REMARK 3 L33: 4.5523 L12: 1.6223 REMARK 3 L13: -0.4663 L23: -3.1113 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.2798 S13: 0.1761 REMARK 3 S21: -0.0112 S22: 0.0724 S23: 0.3051 REMARK 3 S31: -0.2142 S32: -0.1777 S33: -0.1362 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9997 14.2944 0.1867 REMARK 3 T TENSOR REMARK 3 T11: 0.5392 T22: 0.8512 REMARK 3 T33: 0.5398 T12: -0.0846 REMARK 3 T13: 0.1448 T23: 0.2034 REMARK 3 L TENSOR REMARK 3 L11: 0.9514 L22: 3.1136 REMARK 3 L33: 0.6661 L12: 0.2807 REMARK 3 L13: -0.7290 L23: -0.7878 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.1633 S13: 0.0277 REMARK 3 S21: -0.4392 S22: 0.7060 S23: -0.3692 REMARK 3 S31: 0.3205 S32: 0.2010 S33: -0.3097 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7819 6.5039 9.8075 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.0759 REMARK 3 T33: 0.0957 T12: 0.0165 REMARK 3 T13: -0.0021 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.0473 L22: 3.4951 REMARK 3 L33: 4.5911 L12: 1.0038 REMARK 3 L13: -1.7978 L23: -1.5560 REMARK 3 S TENSOR REMARK 3 S11: -0.1726 S12: 0.0851 S13: 0.1000 REMARK 3 S21: -0.1819 S22: 0.0309 S23: 0.1437 REMARK 3 S31: 0.2159 S32: 0.0278 S33: 0.1900 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2463 5.9512 8.2443 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1616 REMARK 3 T33: 0.1072 T12: 0.0533 REMARK 3 T13: 0.0046 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 5.8336 L22: 3.8712 REMARK 3 L33: 7.0036 L12: 0.4466 REMARK 3 L13: -3.7763 L23: -0.8808 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: 0.1011 S13: -0.5306 REMARK 3 S21: -0.4116 S22: -0.3226 S23: -0.3683 REMARK 3 S31: 0.2103 S32: 0.3436 S33: 0.3078 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5664 8.4195 31.0194 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.1764 REMARK 3 T33: 0.1233 T12: 0.0290 REMARK 3 T13: -0.0012 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 5.6295 L22: 6.4172 REMARK 3 L33: 7.0515 L12: -5.2471 REMARK 3 L13: -6.3112 L23: 5.6004 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: -0.8366 S13: -0.2273 REMARK 3 S21: 0.1404 S22: 0.1135 S23: 0.3539 REMARK 3 S31: -0.0488 S32: 0.3481 S33: 0.1018 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0546 17.7950 25.8751 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.0879 REMARK 3 T33: 0.1244 T12: -0.0143 REMARK 3 T13: 0.0109 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 4.3857 L22: 7.6911 REMARK 3 L33: 0.8610 L12: -2.8406 REMARK 3 L13: -0.3973 L23: 0.8721 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: 0.0358 S13: 0.4789 REMARK 3 S21: -0.0669 S22: -0.0729 S23: -0.0565 REMARK 3 S31: -0.1198 S32: -0.0072 S33: -0.0306 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7879 13.9735 34.9950 REMARK 3 T TENSOR REMARK 3 T11: 0.2148 T22: 0.1702 REMARK 3 T33: 0.1635 T12: 0.0052 REMARK 3 T13: 0.0073 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 7.8753 L22: 3.4029 REMARK 3 L33: 1.0133 L12: -3.3488 REMARK 3 L13: -2.0724 L23: 1.4753 REMARK 3 S TENSOR REMARK 3 S11: -0.4668 S12: -0.4923 S13: -0.0385 REMARK 3 S21: 0.5984 S22: 0.2831 S23: 0.1464 REMARK 3 S31: 0.1285 S32: -0.0382 S33: 0.0713 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6192 18.2423 23.7115 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.1359 REMARK 3 T33: 0.1586 T12: 0.0005 REMARK 3 T13: 0.0170 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 4.9877 L22: 5.5790 REMARK 3 L33: 2.7000 L12: -4.9143 REMARK 3 L13: -1.7851 L23: 1.5749 REMARK 3 S TENSOR REMARK 3 S11: 0.3402 S12: 0.3334 S13: 1.3695 REMARK 3 S21: -0.1794 S22: -0.1602 S23: -0.5145 REMARK 3 S31: 0.1294 S32: -0.2458 S33: -0.0913 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4827 12.3099 20.5286 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.2104 REMARK 3 T33: 0.2160 T12: -0.0310 REMARK 3 T13: 0.0055 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 4.1165 L22: 4.4417 REMARK 3 L33: 5.3815 L12: 1.3170 REMARK 3 L13: 1.0040 L23: -1.1205 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: 0.3115 S13: 0.6147 REMARK 3 S21: 0.3952 S22: -0.6129 S23: -0.8252 REMARK 3 S31: -0.4672 S32: 0.8999 S33: 0.1795 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3143 12.0940 15.1033 REMARK 3 T TENSOR REMARK 3 T11: 0.1336 T22: 0.2749 REMARK 3 T33: 0.2242 T12: 0.0281 REMARK 3 T13: 0.0934 T23: 0.0974 REMARK 3 L TENSOR REMARK 3 L11: 3.4988 L22: 3.8460 REMARK 3 L33: 4.0873 L12: 0.1201 REMARK 3 L13: 2.3469 L23: -0.0992 REMARK 3 S TENSOR REMARK 3 S11: -0.1673 S12: -0.4078 S13: -0.7458 REMARK 3 S21: -0.5339 S22: -0.1113 S23: -0.3215 REMARK 3 S31: -0.0624 S32: 0.6461 S33: 0.1308 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2288 15.2642 21.5605 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.1510 REMARK 3 T33: 0.1179 T12: -0.0208 REMARK 3 T13: 0.0210 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 5.2428 L22: 5.1552 REMARK 3 L33: 5.4742 L12: -4.7493 REMARK 3 L13: -3.7069 L23: 2.8063 REMARK 3 S TENSOR REMARK 3 S11: -0.2225 S12: 0.1317 S13: 0.7968 REMARK 3 S21: 0.1108 S22: 0.1032 S23: -0.0996 REMARK 3 S31: -0.0172 S32: 0.2090 S33: 0.0413 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5798 9.7398 27.6361 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.1494 REMARK 3 T33: 0.1493 T12: -0.0026 REMARK 3 T13: 0.0087 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 3.0716 L22: 5.1979 REMARK 3 L33: 3.2514 L12: -2.0413 REMARK 3 L13: -1.9374 L23: 1.4294 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: -0.0780 S13: -0.2427 REMARK 3 S21: 0.2827 S22: -0.1752 S23: 0.7088 REMARK 3 S31: 0.0495 S32: -0.2972 S33: 0.1174 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6173 6.0960 23.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.1476 REMARK 3 T33: 0.0865 T12: 0.0035 REMARK 3 T13: -0.0036 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.6917 L22: 3.6497 REMARK 3 L33: 8.5565 L12: -0.3973 REMARK 3 L13: -5.2198 L23: 0.6202 REMARK 3 S TENSOR REMARK 3 S11: -0.2142 S12: 0.2511 S13: -0.6116 REMARK 3 S21: 0.2634 S22: -0.3559 S23: 0.2734 REMARK 3 S31: 0.0209 S32: -0.4677 S33: 0.2141 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7930 8.3749 1.3915 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.2078 REMARK 3 T33: 0.1771 T12: -0.0093 REMARK 3 T13: 0.0213 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 5.2003 L22: 6.5538 REMARK 3 L33: 8.0840 L12: 6.2201 REMARK 3 L13: -7.3926 L23: -7.8975 REMARK 3 S TENSOR REMARK 3 S11: -0.3132 S12: 0.3152 S13: -0.1917 REMARK 3 S21: -0.4744 S22: 0.0397 S23: -0.3739 REMARK 3 S31: 0.4773 S32: -0.0050 S33: 0.1825 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1193 2.6206 5.6466 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1355 REMARK 3 T33: 0.2136 T12: -0.0049 REMARK 3 T13: -0.0129 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 1.0958 L22: 3.0482 REMARK 3 L33: 4.7496 L12: 0.3299 REMARK 3 L13: -0.3072 L23: -3.7693 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: 0.1501 S13: 0.0064 REMARK 3 S21: 0.1557 S22: -0.0180 S23: 0.6602 REMARK 3 S31: -0.0319 S32: 0.0207 S33: -0.2787 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8514 24.8144 7.9359 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.1697 REMARK 3 T33: 0.2547 T12: 0.0088 REMARK 3 T13: -0.0253 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 6.4084 L22: 8.6692 REMARK 3 L33: 3.5708 L12: 2.8024 REMARK 3 L13: -1.1308 L23: 0.1251 REMARK 3 S TENSOR REMARK 3 S11: 0.0706 S12: -0.1729 S13: 0.5788 REMARK 3 S21: 0.3784 S22: 0.0838 S23: -0.4509 REMARK 3 S31: -0.5156 S32: 0.2886 S33: 0.0474 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7177 22.7206 3.9798 REMARK 3 T TENSOR REMARK 3 T11: 0.1866 T22: 0.1827 REMARK 3 T33: 0.1939 T12: 0.0271 REMARK 3 T13: -0.0228 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 3.8051 L22: 4.9772 REMARK 3 L33: 4.1058 L12: 0.2813 REMARK 3 L13: -0.1541 L23: -0.3537 REMARK 3 S TENSOR REMARK 3 S11: -0.3688 S12: -0.0181 S13: 0.7637 REMARK 3 S21: 0.0034 S22: 0.0176 S23: 0.0855 REMARK 3 S31: -0.2754 S32: 0.2341 S33: 0.0867 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9776 8.6170 -2.3921 REMARK 3 T TENSOR REMARK 3 T11: 0.2473 T22: 0.2152 REMARK 3 T33: 0.1895 T12: 0.0254 REMARK 3 T13: -0.0069 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 4.8467 L22: 5.5175 REMARK 3 L33: 6.4757 L12: 4.8736 REMARK 3 L13: -5.0520 L23: -4.4949 REMARK 3 S TENSOR REMARK 3 S11: -0.1926 S12: 0.5716 S13: 0.0542 REMARK 3 S21: -0.7917 S22: -0.0475 S23: -0.1324 REMARK 3 S31: 0.0460 S32: 0.0759 S33: 0.4190 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9RGK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1292148272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU PHOTONJET-R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25777 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.950 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.42 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M (NH4)2SO4; 100 MM CITRATE BUFFER PH REMARK 280 5.5; 7 V/V % GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.37150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.90700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.37150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.90700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.74300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 328 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 399 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 223 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 267 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 271 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CD CE NZ REMARK 470 ARG A 21 CZ NH1 NH2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 48 CD CE NZ REMARK 470 LYS A 80 NZ REMARK 470 ARG A 104 CD NE CZ NH1 NH2 REMARK 470 LYS B 15 CD CE NZ REMARK 470 ARG B 21 CZ NH1 NH2 REMARK 470 LYS B 35 CE NZ REMARK 470 LYS B 48 CD CE NZ REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 LYS B 80 CE NZ REMARK 470 ARG B 103 CZ NH1 NH2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 62.45 61.84 REMARK 500 SER B 100 57.53 -97.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 399 DISTANCE = 5.85 ANGSTROMS DBREF 9RGK A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 9RGK B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 9RGK GLY A -1 UNP P02766 EXPRESSION TAG SEQADV 9RGK SER A 0 UNP P02766 EXPRESSION TAG SEQADV 9RGK VAL A 107 UNP P02766 ILE 127 ENGINEERED MUTATION SEQADV 9RGK GLY B -1 UNP P02766 EXPRESSION TAG SEQADV 9RGK SER B 0 UNP P02766 EXPRESSION TAG SEQADV 9RGK VAL B 107 UNP P02766 ILE 127 ENGINEERED MUTATION SEQRES 1 A 129 GLY SER GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO SEQRES 2 A 129 LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO SEQRES 3 A 129 ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA SEQRES 4 A 129 ASP ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SER SEQRES 5 A 129 GLU SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU SEQRES 6 A 129 PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SEQRES 7 A 129 SER TYR TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU SEQRES 8 A 129 HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO SEQRES 9 A 129 ARG ARG TYR THR VAL ALA ALA LEU LEU SER PRO TYR SER SEQRES 10 A 129 TYR SER THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 129 GLY SER GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO SEQRES 2 B 129 LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO SEQRES 3 B 129 ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA SEQRES 4 B 129 ASP ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SER SEQRES 5 B 129 GLU SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU SEQRES 6 B 129 PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SEQRES 7 B 129 SER TYR TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU SEQRES 8 B 129 HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO SEQRES 9 B 129 ARG ARG TYR THR VAL ALA ALA LEU LEU SER PRO TYR SER SEQRES 10 B 129 TYR SER THR THR ALA VAL VAL THR ASN PRO LYS GLU HET GOL A 201 9 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *170(H2 O) HELIX 1 AA1 ASP A 74 LEU A 82 1 9 HELIX 2 AA2 ASP B 74 LEU B 82 1 9 SHEET 1 AA1 8 SER A 23 PRO A 24 0 SHEET 2 AA1 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 AA1 8 ARG A 104 SER A 112 1 O VAL A 107 N MET A 13 SHEET 4 AA1 8 SER A 115 THR A 123 -1 O THR A 119 N ALA A 108 SHEET 5 AA1 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 AA1 8 ARG B 104 SER B 112 -1 N ARG B 104 O THR B 123 SHEET 7 AA1 8 LEU B 12 ASP B 18 1 N MET B 13 O VAL B 107 SHEET 8 AA1 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 AA2 8 GLU A 54 LEU A 55 0 SHEET 2 AA2 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 AA2 8 ARG A 104 SER A 112 1 O VAL A 107 N MET A 13 SHEET 4 AA2 8 SER A 115 THR A 123 -1 O THR A 119 N ALA A 108 SHEET 5 AA2 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 AA2 8 ARG B 104 SER B 112 -1 N ARG B 104 O THR B 123 SHEET 7 AA2 8 LEU B 12 ASP B 18 1 N MET B 13 O VAL B 107 SHEET 8 AA2 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 AA3 8 TRP A 41 LYS A 48 0 SHEET 2 AA3 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 AA3 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 AA3 8 HIS A 88 ALA A 97 -1 O PHE A 95 N TYR A 69 SHEET 5 AA3 8 HIS B 88 ALA B 97 -1 O VAL B 94 N GLU A 89 SHEET 6 AA3 8 GLY B 67 ILE B 73 -1 N TYR B 69 O PHE B 95 SHEET 7 AA3 8 ALA B 29 LYS B 35 -1 N HIS B 31 O GLU B 72 SHEET 8 AA3 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 CRYST1 42.743 85.814 63.850 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023396 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015662 0.00000 CONECT 3468 3469 3470 CONECT 3469 3468 CONECT 3470 3468 3471 3472 CONECT 3471 3470 CONECT 3472 3470 3473 3474 3475 CONECT 3473 3472 3476 CONECT 3474 3472 CONECT 3475 3472 CONECT 3476 3473 MASTER 617 0 1 2 24 0 0 6 1914 2 9 20 END