HEADER HYDROLASE 13-JUN-25 9RK9 TITLE FERVIDOLYSIN B (FERB) FROM FERVIDOBACTERIUM PENNIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN-LIKE SERINE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SUBTILISIN-LIKE SERINE PROTEASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FERVIDOBACTERIUM PENNIVORANS; SOURCE 3 ORGANISM_TAXID: 93466; SOURCE 4 STRAIN: T; SOURCE 5 GENE: FERPE_1165; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: FERVIDOBACTERIUM PENNIVORANS; SOURCE 11 ORGANISM_TAXID: 93466; SOURCE 12 STRAIN: T; SOURCE 13 GENE: FERPE_1165; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS PROTEASE, KERATINASE, SUBTILISIN-LIKE S8 ENDOPEPTIDASE, FERB, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.OPPERMAN,C.TOLMIE,M.W.KRUGER REVDAT 1 10-JUN-26 9RK9 0 JRNL AUTH M.W.KRUGER,G.C.SCHRODER,R.JAVIER-LOPEZ,C.TOLMIE,A.C.EBRECHT, JRNL AUTH 2 J.A.LITTLECHILD,J.ARMENGAUD,N.K.BIRKELAND,D.J.OPPERMAN JRNL TITL STRUCTURAL CHARACTERIZATION OF AN S8 PROTEASE FROM JRNL TITL 2 FERVIDOBACTERIUM PENNIVORANS REVEALS A UNIQUE TYROSINE-RICH JRNL TITL 3 BETA-HAIRPIN. JRNL REF ENZYME.MICROB.TECHNOL. V. 199 10904 2026 JRNL REFN ISSN 0141-0229 JRNL PMID 42176613 JRNL DOI 10.1016/J.ENZMICTEC.2026.110904 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 87606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.043 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3294 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2933 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4483 ; 1.714 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6792 ; 1.505 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 6.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;33.687 ;22.390 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;12.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.097 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3741 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 707 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1640 ; 1.889 ; 2.074 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1639 ; 1.880 ; 2.070 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2050 ; 2.594 ; 3.094 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2051 ; 2.601 ; 3.098 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1654 ; 3.356 ; 2.528 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1651 ; 3.350 ; 2.522 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2434 ; 4.954 ; 3.622 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3784 ; 6.590 ;26.245 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3785 ; 6.590 ;26.258 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9RK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1292148545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89725 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 64.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.17700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 2.90600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M CITRIC ACID, 0.06 M BIS-TRIS REMARK 280 PROPANE PH 6.5, 24% PEG3350, 6 MG/ML, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.78700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.53500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.91450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.53500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.78700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.91450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 PHE A 8 REMARK 465 GLU A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 ALA A 12 REMARK 465 GLN A 13 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LEU A 97 OG SER B 357 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 97 C LEU A 97 O 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 291 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 134 -142.85 -159.79 REMARK 500 ASP B 167 -65.25 -131.32 REMARK 500 ALA B 179 19.43 -157.23 REMARK 500 PRO B 268 42.41 -82.25 REMARK 500 ARG B 286 -164.66 -111.90 REMARK 500 ASN B 298 -122.48 69.52 REMARK 500 ASP B 335 45.28 -82.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 857 DISTANCE = 6.00 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE B 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 102 OD2 REMARK 620 2 ASP B 143 OD1 154.4 REMARK 620 3 ASP B 143 OD2 152.6 52.0 REMARK 620 4 VAL B 181 O 94.5 84.4 97.2 REMARK 620 5 ASN B 184 OD1 73.1 81.4 132.3 86.1 REMARK 620 6 LEU B 186 O 85.3 90.9 87.9 168.6 83.0 REMARK 620 7 VAL B 188 O 78.9 126.4 77.2 86.5 150.3 104.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 327 OD1 REMARK 620 2 ASN B 329 OD1 78.4 REMARK 620 3 ASP B 331 OD1 82.5 83.7 REMARK 620 4 TYR B 333 O 84.0 161.0 87.0 REMARK 620 5 ASP B 335 OD1 97.5 90.0 173.6 99.4 REMARK 620 6 HOH B 686 O 165.3 115.3 93.3 81.6 88.3 REMARK 620 N 1 2 3 4 5 DBREF 9RK9 A 2 97 UNP H9UCM0 H9UCM0_FERPD 22 117 DBREF 9RK9 B 98 419 UNP H9UCM0 H9UCM0_FERPD 118 439 SEQADV 9RK9 MET A 1 UNP H9UCM0 INITIATING METHIONINE SEQADV 9RK9 SER B 420 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 ALA B 421 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 HIS B 422 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 HIS B 423 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 HIS B 424 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 HIS B 425 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 HIS B 426 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 HIS B 427 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 HIS B 428 UNP H9UCM0 EXPRESSION TAG SEQADV 9RK9 HIS B 429 UNP H9UCM0 EXPRESSION TAG SEQRES 1 A 97 MET ASN SER LEU GLU PRO ARG PHE GLU PRO ARG ALA GLN SEQRES 2 A 97 GLY GLU PHE GLU VAL SER GLU LYS LEU GLY VAL SER GLY SEQRES 3 A 97 THR GLU GLU ASP TYR VAL PRO GLY GLU TYR VAL VAL GLN SEQRES 4 A 97 PHE GLU PRO ARG GLU ASP ALA VAL LYS ALA LEU SER SER SEQRES 5 A 97 VAL GLY ALA GLU VAL VAL ARG ALA TYR SER PHE SER ASP SEQRES 6 A 97 VAL GLN ILE VAL THR VAL ARG THR GLU LYS PRO GLU LEU SEQRES 7 A 97 LEU ASN SER LEU PRO GLY VAL LYS SER VAL ASP LYS ASN SEQRES 8 A 97 TYR ILE TYR ARG ALA LEU SEQRES 1 B 332 ALA THR PRO ASN ASP THR TYR TYR ARG TYR GLN TRP HIS SEQRES 2 B 332 TYR ASN ASN ILE LYS LEU PRO GLN ALA TRP ASP ILE MET SEQRES 3 B 332 LYS SER ALA ASN ILE VAL VAL ALA VAL ILE ASP THR GLY SEQRES 4 B 332 VAL SER PHE THR HIS PRO ASP LEU GLN GLY ILE PHE VAL SEQRES 5 B 332 GLN GLY TYR ASP PHE VAL ASP GLY ASP TYR ASP PRO THR SEQRES 6 B 332 ASP PRO ALA GLN ASP VAL SER HIS GLY THR HIS CYS ILE SEQRES 7 B 332 GLY THR ILE ALA ALA VAL THR ASN ASN SER LEU GLY VAL SEQRES 8 B 332 ALA GLY VAL ASN TRP GLY GLY TYR GLY ILE LYS ILE MET SEQRES 9 B 332 PRO ILE ARG VAL LEU GLY ALA ASP GLY SER GLY THR LEU SEQRES 10 B 332 ASP ASN VAL ALA ALA GLY ILE ARG TRP ALA VAL ASP ASN SEQRES 11 B 332 GLY ALA LYS ILE VAL SER MET SER LEU GLY GLY SER GLY SEQRES 12 B 332 ALA GLN VAL LEU MET ASP ALA VAL LYS TYR ALA TYR SER SEQRES 13 B 332 ARG ASN VAL THR LEU ILE CYS ALA ALA GLY ASN GLU SER SEQRES 14 B 332 ARG PRO SER LEU SER TYR PRO ALA ALA TYR VAL GLU THR SEQRES 15 B 332 ILE ALA VAL GLY ALA THR ARG TYR ASP ASN THR ARG ALA SEQRES 16 B 332 ARG TYR SER ASN TYR ASN TYR THR ARG TYR TYR ASP PRO SEQRES 17 B 332 TYR ARG LYS ALA TYR VAL TYR HIS TYR LEU ASP VAL VAL SEQRES 18 B 332 ALA PRO GLY GLY ASP THR SER VAL ASP GLN ASN GLY ASP SEQRES 19 B 332 GLY TYR ALA ASP GLY VAL LEU SER THR THR TRP THR PRO SEQRES 20 B 332 THR TYR GLY ASN THR TYR MET PHE LEU GLN GLY THR SER SEQRES 21 B 332 MET ALA THR PRO HIS VAL ALA ALA LEU ALA ALA MET LEU SEQRES 22 B 332 TYR ALA LYS GLY TYR THR THR PRO GLU ALA ILE ARG SER SEQRES 23 B 332 ARG LEU ILE LYS THR ALA TYR LYS ILE PRO GLY TYR THR SEQRES 24 B 332 TYR ASN SER SER GLY TRP ASN LYS TYR VAL GLY TYR GLY SEQRES 25 B 332 LEU ILE ASP ALA TYR LYS ALA LEU THR TYR SER ALA HIS SEQRES 26 B 332 HIS HIS HIS HIS HIS HIS HIS HET GOL A 601 6 HET 1PE A 602 16 HET PEG A 603 7 HET CA B 501 1 HET CA B 502 1 HET 1PE B 503 13 HET PEG B 504 7 HET CIT B 505 13 HETNAM GOL GLYCEROL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CA CALCIUM ION HETNAM CIT CITRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 FORMUL 3 GOL C3 H8 O3 FORMUL 4 1PE 2(C10 H22 O6) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 CA 2(CA 2+) FORMUL 10 CIT C6 H8 O7 FORMUL 11 HOH *327(H2 O) HELIX 1 AA1 ASP A 45 SER A 52 1 8 HELIX 2 AA2 LYS A 75 LEU A 82 5 8 HELIX 3 AA3 TYR B 104 TYR B 107 5 4 HELIX 4 AA4 GLN B 108 ILE B 114 1 7 HELIX 5 AA5 LYS B 115 TRP B 120 1 6 HELIX 6 AA6 SER B 169 ALA B 180 1 12 HELIX 7 AA7 LEU B 214 ASN B 227 1 14 HELIX 8 AA8 ALA B 241 ARG B 254 1 14 HELIX 9 AA9 GLY B 355 LYS B 373 1 19 HELIX 10 AB1 THR B 377 THR B 388 1 12 HELIX 11 AB2 ASP B 412 TYR B 419 1 8 SHEET 1 AA1 3 GLU A 17 VAL A 18 0 SHEET 2 AA1 3 GLY B 347 LEU B 353 1 O PHE B 352 N GLU A 17 SHEET 3 AA1 3 VAL B 337 THR B 343 -1 N VAL B 337 O LEU B 353 SHEET 1 AA2 5 GLU A 56 SER A 62 0 SHEET 2 AA2 5 GLN A 67 ARG A 72 -1 O THR A 70 N VAL A 58 SHEET 3 AA2 5 TYR A 31 PHE A 40 -1 N VAL A 38 O VAL A 69 SHEET 4 AA2 5 VAL A 85 ALA A 96 -1 O LYS A 86 N GLN A 39 SHEET 5 AA2 5 SER B 211 THR B 213 -1 O GLY B 212 N TYR A 94 SHEET 1 AA3 5 GLU A 56 SER A 62 0 SHEET 2 AA3 5 GLN A 67 ARG A 72 -1 O THR A 70 N VAL A 58 SHEET 3 AA3 5 TYR A 31 PHE A 40 -1 N VAL A 38 O VAL A 69 SHEET 4 AA3 5 VAL A 85 ALA A 96 -1 O LYS A 86 N GLN A 39 SHEET 5 AA3 5 LEU B 236 GLY B 237 -1 O GLY B 237 N ARG A 95 SHEET 1 AA4 7 TYR B 152 ASP B 153 0 SHEET 2 AA4 7 LYS B 199 ARG B 204 1 O ARG B 204 N TYR B 152 SHEET 3 AA4 7 VAL B 129 ASP B 134 1 N VAL B 130 O LYS B 199 SHEET 4 AA4 7 ILE B 231 MET B 234 1 O SER B 233 N ALA B 131 SHEET 5 AA4 7 THR B 257 ALA B 261 1 O ILE B 259 N MET B 234 SHEET 6 AA4 7 ILE B 280 THR B 285 1 O ILE B 280 N CYS B 260 SHEET 7 AA4 7 VAL B 317 PRO B 320 1 O VAL B 317 N GLY B 283 SHEET 1 AA5 2 TYR B 299 ASP B 304 0 SHEET 2 AA5 2 ALA B 309 TYR B 314 -1 O VAL B 311 N TYR B 302 LINK OD2 ASP B 102 CA CA B 501 1555 1555 2.34 LINK OD1 ASP B 143 CA CA B 501 1555 1555 2.44 LINK OD2 ASP B 143 CA CA B 501 1555 1555 2.53 LINK O VAL B 181 CA CA B 501 1555 1555 2.24 LINK OD1 ASN B 184 CA CA B 501 1555 1555 2.47 LINK O LEU B 186 CA CA B 501 1555 1555 2.35 LINK O VAL B 188 CA CA B 501 1555 1555 2.38 LINK OD1 ASP B 327 CA CA B 502 1555 1555 2.37 LINK OD1 ASN B 329 CA CA B 502 1555 1555 2.26 LINK OD1 ASP B 331 CA CA B 502 1555 1555 2.40 LINK O TYR B 333 CA CA B 502 1555 1555 2.21 LINK OD1 ASP B 335 CA CA B 502 1555 1555 2.28 LINK CA CA B 502 O HOH B 686 1555 1555 2.43 CISPEP 1 TYR B 272 PRO B 273 0 3.27 CRYST1 53.574 71.829 141.070 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007089 0.00000 CONECT 692 3188 CONECT 1035 3188 CONECT 1036 3188 CONECT 1316 3188 CONECT 1341 3188 CONECT 1352 3188 CONECT 1364 3188 CONECT 2420 3189 CONECT 2437 3189 CONECT 2449 3189 CONECT 2458 3189 CONECT 2478 3189 CONECT 3159 3160 3161 CONECT 3160 3159 CONECT 3161 3159 3162 3163 CONECT 3162 3161 CONECT 3163 3161 3164 CONECT 3164 3163 CONECT 3165 3166 CONECT 3166 3165 3167 CONECT 3167 3166 3168 CONECT 3168 3167 3170 CONECT 3169 3170 3171 CONECT 3170 3168 3169 CONECT 3171 3169 3173 CONECT 3172 3173 3174 CONECT 3173 3171 3172 CONECT 3174 3172 3176 CONECT 3175 3176 3177 CONECT 3176 3174 3175 CONECT 3177 3175 3179 CONECT 3178 3179 3180 CONECT 3179 3177 3178 CONECT 3180 3178 CONECT 3181 3182 3183 CONECT 3182 3181 CONECT 3183 3181 3184 CONECT 3184 3183 3185 CONECT 3185 3184 3186 CONECT 3186 3185 3187 CONECT 3187 3186 CONECT 3188 692 1035 1036 1316 CONECT 3188 1341 1352 1364 CONECT 3189 2420 2437 2449 2458 CONECT 3189 2478 3379 CONECT 3190 3191 CONECT 3191 3190 3192 CONECT 3192 3191 3193 CONECT 3193 3192 3195 CONECT 3194 3195 3196 CONECT 3195 3193 3194 CONECT 3196 3194 3198 CONECT 3197 3198 3199 CONECT 3198 3196 3197 CONECT 3199 3197 3201 CONECT 3200 3201 3202 CONECT 3201 3199 3200 CONECT 3202 3200 CONECT 3203 3204 3205 CONECT 3204 3203 CONECT 3205 3203 3206 CONECT 3206 3205 3207 CONECT 3207 3206 3208 CONECT 3208 3207 3209 CONECT 3209 3208 CONECT 3210 3211 3212 3213 CONECT 3211 3210 CONECT 3212 3210 CONECT 3213 3210 3214 CONECT 3214 3213 3215 3216 3220 CONECT 3215 3214 CONECT 3216 3214 3217 CONECT 3217 3216 3218 3219 CONECT 3218 3217 CONECT 3219 3217 CONECT 3220 3214 3221 3222 CONECT 3221 3220 CONECT 3222 3220 CONECT 3379 3189 MASTER 387 0 8 11 22 0 0 6 3535 2 79 34 END