HEADER PROTEIN BINDING 13-JUN-25 9RKK TITLE STAPHYLOKINASE STAR WT COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAPHYLOKINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCACEAE; SOURCE 3 ORGANISM_TAXID: 90964; SOURCE 4 GENE: SAK, M1K003_1777; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THROMBOLYSIS, THROMBOLYTIC AGENT, STROKE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.ANTHONY,P.KADERAVEK,L.ZIDEK,M.MAREK,Z.PROKOP,J.DAMBORSKY REVDAT 1 15-APR-26 9RKK 0 JRNL AUTH L.ANTHONY,L.KASIAROVA,N.VERMA,J.MICAN,A.STRUNGA, JRNL AUTH 2 J.IGLESIAS-PLANAS,J.KUCERA,T.HENEK,P.VANACEK,P.KADERAVEK, JRNL AUTH 3 L.ZIDEK,J.DAMBORSKY,S.MAZURENKO,D.BEDNAR,L.HERNYCHOVA, JRNL AUTH 4 Z.PROKOP,M.MAREK JRNL TITL DYNAMICS OF NON-IMMUNOGENIC STAPHYLOKINASE THROMBOLYTICS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9RKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1292148339. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 50 MM SODIUM PHOSPHATE 100 MM REMARK 210 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 600 UM [U-13C; U-15N] REMARK 210 STAPHYLOKINASE STAR WT, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM NACL, 1 REMARK 210 MM DTT, 0.5 MM EDTA, 0.04 % W/V REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 3D 1H-13C NOESY; 3D 1H-15N NOESY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HNCO; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, ARTINA, POKY, I-PINE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 64.29 61.76 REMARK 500 1 ALA A 15 137.79 -171.27 REMARK 500 1 PHE A 18 176.72 -59.33 REMARK 500 1 GLU A 19 80.39 50.69 REMARK 500 1 PRO A 20 -87.30 -69.81 REMARK 500 1 PRO A 23 -170.97 -69.73 REMARK 500 1 THR A 54 97.47 -53.06 REMARK 500 1 ALA A 72 -171.96 -63.69 REMARK 500 1 TYR A 73 -70.60 -83.90 REMARK 500 1 LYS A 74 -69.06 -146.34 REMARK 500 1 LEU A 81 115.42 -162.13 REMARK 500 1 ASP A 82 107.84 -47.27 REMARK 500 1 LYS A 98 139.38 -175.85 REMARK 500 1 ASP A 115 105.94 -59.11 REMARK 500 1 SER A 117 -32.99 -170.63 REMARK 500 1 LYS A 121 -60.79 -91.72 REMARK 500 1 ASN A 122 71.46 -113.70 REMARK 500 1 PRO A 123 -165.31 -69.76 REMARK 500 1 LYS A 135 108.25 -51.00 REMARK 500 2 SER A 2 180.00 -57.58 REMARK 500 2 SER A 3 -74.11 -129.89 REMARK 500 2 LYS A 8 173.40 -54.84 REMARK 500 2 TYR A 9 -175.37 -59.01 REMARK 500 2 ALA A 15 127.29 -179.40 REMARK 500 2 TYR A 17 -168.88 -103.45 REMARK 500 2 GLU A 19 76.41 48.50 REMARK 500 2 PRO A 20 -87.04 -69.83 REMARK 500 2 PRO A 23 -179.91 -69.76 REMARK 500 2 THR A 54 97.93 -53.66 REMARK 500 2 ALA A 72 -172.41 -66.85 REMARK 500 2 TYR A 73 -71.08 -82.24 REMARK 500 2 LYS A 74 -62.55 -153.43 REMARK 500 2 LEU A 81 115.08 -162.09 REMARK 500 2 ASP A 82 107.08 -46.95 REMARK 500 2 LYS A 98 138.78 -175.80 REMARK 500 2 PRO A 114 99.11 -69.78 REMARK 500 2 ASP A 115 106.84 -59.79 REMARK 500 2 SER A 117 -33.21 -172.21 REMARK 500 2 LYS A 121 -61.23 -90.82 REMARK 500 2 ASN A 122 72.29 -113.75 REMARK 500 2 PRO A 123 -164.43 -69.82 REMARK 500 2 LYS A 135 106.86 -50.33 REMARK 500 3 TYR A 9 103.54 59.94 REMARK 500 3 ALA A 15 127.65 -178.77 REMARK 500 3 PHE A 18 -176.72 -57.21 REMARK 500 3 GLU A 19 85.60 59.18 REMARK 500 3 PRO A 20 -85.84 -69.69 REMARK 500 3 THR A 54 97.78 -53.36 REMARK 500 3 ALA A 72 -172.46 -66.33 REMARK 500 3 LYS A 74 -65.43 -152.79 REMARK 500 REMARK 500 THIS ENTRY HAS 355 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34999 RELATED DB: BMRB REMARK 900 STAPHYLOKINASE STAR WT DBREF1 9RKK A 1 136 UNP A0A9P3DML6_STAAU DBREF2 9RKK A A0A9P3DML6 28 163 SEQRES 1 A 136 SER SER SER PHE ASP LYS GLY LYS TYR LYS LYS GLY ASP SEQRES 2 A 136 ASP ALA SER TYR PHE GLU PRO THR GLY PRO TYR LEU MET SEQRES 3 A 136 VAL ASN VAL THR GLY VAL ASP SER LYS GLY ASN GLU LEU SEQRES 4 A 136 LEU SER PRO HIS TYR VAL GLU PHE PRO ILE LYS PRO GLY SEQRES 5 A 136 THR THR LEU THR LYS GLU LYS ILE GLU TYR TYR VAL GLU SEQRES 6 A 136 TRP ALA LEU ASP ALA THR ALA TYR LYS GLU PHE ARG VAL SEQRES 7 A 136 VAL GLU LEU ASP PRO SER ALA LYS ILE GLU VAL THR TYR SEQRES 8 A 136 TYR ASP LYS ASN LYS LYS LYS GLU GLU THR LYS SER PHE SEQRES 9 A 136 PRO ILE THR GLU LYS GLY PHE VAL VAL PRO ASP LEU SER SEQRES 10 A 136 GLU HIS ILE LYS ASN PRO GLY PHE ASN LEU ILE THR LYS SEQRES 11 A 136 VAL VAL ILE GLU LYS LYS HELIX 1 AA1 THR A 56 ALA A 72 1 17 SHEET 1 AA1 4 GLU A 38 PRO A 48 0 SHEET 2 AA1 4 TYR A 24 VAL A 32 -1 N VAL A 27 O VAL A 45 SHEET 3 AA1 4 GLY A 124 GLU A 134 1 O PHE A 125 N MET A 26 SHEET 4 AA1 4 ARG A 77 LEU A 81 -1 N ARG A 77 O GLU A 134 SHEET 1 AA2 5 GLU A 38 PRO A 48 0 SHEET 2 AA2 5 TYR A 24 VAL A 32 -1 N VAL A 27 O VAL A 45 SHEET 3 AA2 5 GLY A 124 GLU A 134 1 O PHE A 125 N MET A 26 SHEET 4 AA2 5 LYS A 86 ASP A 93 -1 N GLU A 88 O ASN A 126 SHEET 5 AA2 5 LYS A 98 PRO A 105 -1 O GLU A 100 N TYR A 91 SHEET 1 AA3 2 THR A 54 LEU A 55 0 SHEET 2 AA3 2 PHE A 111 VAL A 112 -1 O PHE A 111 N LEU A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 157 0 0 1 11 0 0 6 1096 1 0 11 END