HEADER VIRUS 08-JUL-25 9RVN TITLE PENICILLIUM CHRYSOGENUM VIRUS EMPTY VIRIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CP,COAT PROTEIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PENICILLIUM CHRYSOGENUM VIRUS CAPSID P4 PROTEIN; COMPND 7 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM CHRYSOGENUM; SOURCE 3 ORGANISM_TAXID: 5076; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PENICILLIUM CHRYSOGENUM; SOURCE 6 ORGANISM_TAXID: 5076 KEYWDS CRYO-EM, PCV, VIRUS., VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR D.GIL-CANTERO,G.NOVOA BENAVIDES,D.LUQUE REVDAT 1 22-JUL-26 9RVN 0 JRNL AUTH D.GIL-CANTERO,G.NOVOA BENAVIDES,D.LUQUE,J.RUIZ CASTON JRNL TITL PENICILLIUM CHRYSOGENUM VIRUS FULL VIRIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : XMIPP, EPU, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.300 REMARK 3 NUMBER OF PARTICLES : 281376 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9RVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149101. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PENICILLIUM CHRYSOGENUM VIRUS REMARK 245 (ISOLATE CASTON) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 3 MIN INCUBATION IN CARBON REMARK 245 COVERED GRIDS R2/2 CU/RH. REMARK 245 BLOTTED 3 S AT FORCE 0 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 100.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 83000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 120-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 120-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.499178 -0.809381 0.309392 -0.59480 REMARK 350 BIOMT2 2 0.809982 0.309017 -0.498436 -0.98426 REMARK 350 BIOMT3 2 0.307817 0.499409 0.809839 0.36747 REMARK 350 BIOMT1 3 -0.311170 -0.499625 0.808423 0.01862 REMARK 350 BIOMT2 3 0.501196 -0.809016 -0.307076 -1.95335 REMARK 350 BIOMT3 3 0.807450 0.309626 0.502151 -0.00957 REMARK 350 BIOMT1 4 -0.311170 0.501196 0.807450 0.99253 REMARK 350 BIOMT2 4 -0.499625 -0.809016 0.309626 -1.56802 REMARK 350 BIOMT3 4 0.808423 -0.307076 0.502151 -0.61007 REMARK 350 BIOMT1 5 0.499178 0.809982 0.307817 0.98103 REMARK 350 BIOMT2 5 -0.809382 0.309017 0.499409 -0.36079 REMARK 350 BIOMT3 5 0.309392 -0.498436 0.809839 -0.60415 REMARK 350 BIOMT1 6 -0.811189 0.307577 0.497361 -0.25957 REMARK 350 BIOMT2 6 0.307577 -0.498949 0.810213 0.45086 REMARK 350 BIOMT3 6 0.497361 0.810213 0.310139 -0.18028 REMARK 350 BIOMT1 7 -0.002699 0.999995 -0.001500 0.10296 REMARK 350 BIOMT2 7 -0.001207 0.001497 0.999998 1.05674 REMARK 350 BIOMT3 7 0.999996 0.002701 0.001203 -1.15960 REMARK 350 BIOMT1 8 0.808169 0.310452 -0.500483 -0.88024 REMARK 350 BIOMT2 8 0.308427 0.500848 0.808718 1.42345 REMARK 350 BIOMT3 8 0.501734 -0.807943 0.309018 -1.75662 REMARK 350 BIOMT1 9 0.500823 -0.808128 -0.310010 -1.85042 REMARK 350 BIOMT2 9 0.808574 0.309017 0.500715 1.04422 REMARK 350 BIOMT3 9 -0.308844 -0.501436 0.808194 -1.14627 REMARK 350 BIOMT1 10 -0.499995 -0.809904 0.306692 -1.46682 REMARK 350 BIOMT2 10 0.808049 -0.308891 0.501640 0.44312 REMARK 350 BIOMT3 10 -0.311546 0.498640 0.808887 -0.17204 REMARK 350 BIOMT1 11 -0.498606 -0.809418 0.310217 -1.45798 REMARK 350 BIOMT2 11 -0.809418 0.306672 -0.500794 -2.39494 REMARK 350 BIOMT3 11 0.310217 -0.500794 -0.808066 -3.89238 REMARK 350 BIOMT1 12 -0.809017 0.308363 0.500404 -0.25074 REMARK 350 BIOMT2 12 -0.309798 0.499794 -0.808846 -2.39937 REMARK 350 BIOMT3 12 -0.499517 -0.809394 -0.308811 -3.88093 REMARK 350 BIOMT1 13 -0.000041 0.999999 0.001244 0.11084 REMARK 350 BIOMT2 13 0.001203 0.001244 -0.999999 -3.00425 REMARK 350 BIOMT3 13 -0.999999 -0.000040 -0.001203 -2.90065 REMARK 350 BIOMT1 14 0.810343 0.309672 -0.497440 -0.87294 REMARK 350 BIOMT2 14 -0.306208 -0.499998 -0.810086 -3.37367 REMARK 350 BIOMT3 14 -0.499580 0.808768 -0.310346 -2.30625 REMARK 350 BIOMT1 15 0.502213 -0.808609 -0.306485 -1.84252 REMARK 350 BIOMT2 15 -0.807200 -0.311233 -0.501560 -2.99709 REMARK 350 BIOMT3 15 0.310178 0.499285 -0.809014 -2.91918 REMARK 350 BIOMT1 16 0.309795 0.501841 -0.807578 -1.74942 REMARK 350 BIOMT2 16 0.501841 -0.807723 -0.309419 -1.95629 REMARK 350 BIOMT3 16 -0.807578 -0.309419 -0.502073 -4.05302 REMARK 350 BIOMT1 17 0.312538 -0.498977 -0.808296 -2.72439 REMARK 350 BIOMT2 17 -0.498977 -0.810308 0.307283 -1.57348 REMARK 350 BIOMT3 17 -0.808296 0.307283 -0.502230 -3.45262 REMARK 350 BIOMT1 18 -0.496957 -0.810826 -0.309184 -2.71619 REMARK 350 BIOMT2 18 -0.810826 0.306924 0.498357 -0.36622 REMARK 350 BIOMT3 18 -0.309184 0.498357 -0.809966 -3.45884 REMARK 350 BIOMT1 19 -0.999996 -0.002741 0.000000 -1.73616 REMARK 350 BIOMT2 19 -0.002741 0.999996 -0.000256 -0.00290 REMARK 350 BIOMT3 19 0.000000 -0.000256 -1.000000 -4.06309 REMARK 350 BIOMT1 20 -0.501396 0.808532 -0.308024 -1.13866 REMARK 350 BIOMT2 20 0.808532 0.311107 -0.499489 -0.98562 REMARK 350 BIOMT3 20 -0.308024 -0.499489 -0.809711 -4.43031 REMARK 350 BIOMT1 21 -0.499999 -0.808652 -0.309972 -2.71831 REMARK 350 BIOMT2 21 0.809459 -0.309143 -0.499205 -1.58904 REMARK 350 BIOMT3 21 0.307858 -0.500512 0.809143 -0.60892 REMARK 350 BIOMT1 22 -0.999996 0.000000 -0.002662 -1.73889 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000252 -1.94967 REMARK 350 BIOMT3 22 -0.002662 0.000252 0.999996 -0.00207 REMARK 350 BIOMT1 23 -0.499995 0.808049 -0.311546 -1.14507 REMARK 350 BIOMT2 23 -0.809904 -0.308891 0.498640 -0.96532 REMARK 350 BIOMT3 23 0.306692 0.501640 0.808887 0.36674 REMARK 350 BIOMT1 24 0.309019 0.498800 -0.809757 -1.75748 REMARK 350 BIOMT2 24 -0.500993 0.809094 0.307203 0.00367 REMARK 350 BIOMT3 24 0.808402 0.310751 0.499921 -0.01218 REMARK 350 BIOMT1 25 0.309017 -0.500377 -0.808784 -2.72980 REMARK 350 BIOMT2 25 0.499829 0.808938 -0.309500 -0.38180 REMARK 350 BIOMT3 25 0.809123 -0.308613 0.500079 -0.61517 REMARK 350 BIOMT1 26 0.002703 -0.001455 -0.999995 -2.89723 REMARK 350 BIOMT2 26 -0.999996 -0.001245 -0.002701 -1.84853 REMARK 350 BIOMT3 26 -0.001241 0.999998 -0.001458 -1.06037 REMARK 350 BIOMT1 27 -0.307645 -0.502044 -0.808273 -3.26488 REMARK 350 BIOMT2 27 -0.501015 0.807644 -0.310957 -1.25350 REMARK 350 BIOMT3 27 0.808912 0.309293 -0.499999 -2.04442 REMARK 350 BIOMT1 28 -0.809017 -0.309798 -0.499517 -2.88477 REMARK 350 BIOMT2 28 0.308363 0.499794 -0.809394 -1.86469 REMARK 350 BIOMT3 28 0.500404 -0.808846 -0.308811 -3.01372 REMARK 350 BIOMT1 29 -0.808534 0.309607 -0.500417 -2.28220 REMARK 350 BIOMT2 29 0.309607 -0.499358 -0.809188 -2.83746 REMARK 350 BIOMT3 29 -0.500417 -0.809188 0.307891 -2.62873 REMARK 350 BIOMT1 30 -0.306863 0.500173 -0.809730 -2.28990 REMARK 350 BIOMT2 30 -0.499004 -0.809016 -0.310625 -2.82748 REMARK 350 BIOMT3 30 -0.810451 0.308739 0.497846 -1.42149 REMARK 350 BIOMT1 31 0.807682 0.311949 0.500338 1.15388 REMARK 350 BIOMT2 31 -0.308237 -0.499997 0.809316 -0.08574 REMARK 350 BIOMT3 31 0.502633 -0.807892 -0.307684 -3.00857 REMARK 350 BIOMT1 32 0.809862 -0.307452 0.499596 0.55030 REMARK 350 BIOMT2 32 -0.309732 0.499154 0.809266 0.88713 REMARK 350 BIOMT3 32 -0.498185 -0.810135 0.309018 -2.62543 REMARK 350 BIOMT1 33 0.309019 -0.500993 0.808402 0.55479 REMARK 350 BIOMT2 33 0.498800 0.809094 0.310751 0.87745 REMARK 350 BIOMT3 33 -0.809757 0.307202 0.499921 -1.41817 REMARK 350 BIOMT1 34 -0.002699 -0.001207 0.999996 1.16115 REMARK 350 BIOMT2 34 0.999995 0.001497 0.002701 -0.10141 REMARK 350 BIOMT3 34 -0.001500 0.999998 0.001203 -1.05519 REMARK 350 BIOMT1 35 0.305491 0.501219 0.809601 1.53141 REMARK 350 BIOMT2 35 0.501219 -0.807566 0.310832 -0.69669 REMARK 350 BIOMT3 35 0.809601 0.310832 -0.497925 -2.03811 REMARK 350 BIOMT1 36 -0.310386 0.498158 0.809629 0.99468 REMARK 350 BIOMT2 36 0.498773 0.810385 -0.307410 -0.37706 REMARK 350 BIOMT3 36 -0.809250 0.308406 -0.500000 -3.44782 REMARK 350 BIOMT1 37 0.497779 0.809496 0.311339 0.98650 REMARK 350 BIOMT2 37 0.810748 -0.306798 -0.498561 -1.58432 REMARK 350 BIOMT3 37 -0.308065 0.500590 -0.809015 -3.45376 REMARK 350 BIOMT1 38 0.999993 0.002741 0.002661 0.00807 REMARK 350 BIOMT2 38 0.002741 -0.999996 0.000004 -1.94780 REMARK 350 BIOMT3 38 0.002661 0.000004 -0.999996 -4.06052 REMARK 350 BIOMT1 39 0.502213 -0.807200 0.310178 -0.58845 REMARK 350 BIOMT2 39 -0.808609 -0.311233 0.499285 -0.96517 REMARK 350 BIOMT3 39 -0.306485 -0.501560 -0.809014 -4.42958 REMARK 350 BIOMT1 40 -0.307645 -0.501015 0.808912 0.02131 REMARK 350 BIOMT2 40 -0.502044 0.807644 0.309293 0.00560 REMARK 350 BIOMT3 40 -0.808273 -0.310957 -0.499999 -4.05091 REMARK 350 BIOMT1 41 -0.499999 0.809459 0.307858 0.11457 REMARK 350 BIOMT2 41 -0.808652 -0.309143 -0.500512 -2.99418 REMARK 350 BIOMT3 41 -0.309972 -0.499205 0.809143 -1.14315 REMARK 350 BIOMT1 42 0.500823 0.808574 -0.308844 -0.27162 REMARK 350 BIOMT2 42 -0.808128 0.309017 -0.501436 -2.39284 REMARK 350 BIOMT3 42 -0.310010 0.500716 0.808194 -0.17009 REMARK 350 BIOMT1 43 0.809862 -0.309732 -0.498185 -1.47884 REMARK 350 BIOMT2 43 -0.307452 0.499154 -0.810135 -2.40058 REMARK 350 BIOMT3 43 0.499596 0.809266 0.309018 -0.18154 REMARK 350 BIOMT1 44 0.000038 -0.999999 0.001497 -1.83876 REMARK 350 BIOMT2 44 0.001459 -0.001496 -0.999998 -3.00670 REMARK 350 BIOMT3 44 0.999999 0.000040 0.001459 -1.16168 REMARK 350 BIOMT1 45 -0.809501 -0.308300 0.499659 -0.85398 REMARK 350 BIOMT2 45 -0.308300 -0.501051 -0.808640 -3.37357 REMARK 350 BIOMT3 45 0.499659 -0.808640 0.310553 -1.75598 REMARK 350 BIOMT1 46 0.807682 -0.308237 0.502633 0.55381 REMARK 350 BIOMT2 46 0.311949 -0.499997 -0.807892 -2.83343 REMARK 350 BIOMT3 46 0.500338 0.809316 -0.307684 -1.43363 REMARK 350 BIOMT1 47 0.308230 -0.497954 0.810578 0.56149 REMARK 350 BIOMT2 47 -0.497954 -0.810463 -0.308532 -2.82373 REMARK 350 BIOMT3 47 0.810578 -0.308532 -0.497766 -2.64088 REMARK 350 BIOMT1 48 0.000038 0.001459 0.999999 1.16613 REMARK 350 BIOMT2 48 -0.999999 -0.001496 0.000040 -1.84321 REMARK 350 BIOMT3 48 0.001497 -0.999998 0.001459 -3.00225 REMARK 350 BIOMT1 49 0.309017 0.499829 0.809123 1.53214 REMARK 350 BIOMT2 49 -0.500377 0.808938 -0.308613 -1.24692 REMARK 350 BIOMT3 49 -0.808784 -0.309500 0.500079 -2.01835 REMARK 350 BIOMT1 50 0.808169 0.308427 0.501734 1.15371 REMARK 350 BIOMT2 50 0.310452 0.500848 -0.807943 -1.85891 REMARK 350 BIOMT3 50 -0.500483 0.808718 0.309018 -1.04889 REMARK 350 BIOMT1 51 -0.310386 0.498773 -0.809250 -2.29335 REMARK 350 BIOMT2 51 0.498158 0.810385 0.308406 0.87339 REMARK 350 BIOMT3 51 0.809629 -0.307410 -0.500000 -2.64514 REMARK 350 BIOMT1 52 -0.000041 0.001203 -0.999999 -2.89703 REMARK 350 BIOMT2 52 0.999999 0.001244 -0.000040 -0.10722 REMARK 350 BIOMT3 52 0.001244 -0.999999 -0.001203 -3.00788 REMARK 350 BIOMT1 53 -0.306863 -0.499004 -0.810451 -3.26566 REMARK 350 BIOMT2 53 0.500173 -0.809016 0.308739 -0.70326 REMARK 350 BIOMT3 53 -0.809730 -0.310625 0.497846 -2.02480 REMARK 350 BIOMT1 54 -0.806834 -0.310578 -0.502554 -2.88980 REMARK 350 BIOMT2 54 -0.310578 -0.500644 0.808020 -0.09103 REMARK 350 BIOMT3 54 -0.502554 0.808020 0.307478 -1.05450 REMARK 350 BIOMT1 55 -0.809011 0.306082 -0.501812 -2.28888 REMARK 350 BIOMT2 55 -0.311823 0.500202 0.807815 0.88339 REMARK 350 BIOMT3 55 0.498265 0.810008 -0.309225 -1.43789 REMARK 350 BIOMT1 56 0.002703 -0.999996 -0.001241 -1.84201 REMARK 350 BIOMT2 56 -0.001455 -0.001245 0.999998 1.05385 REMARK 350 BIOMT3 56 -0.999995 -0.002701 -0.001458 -2.90376 REMARK 350 BIOMT1 57 -0.809011 -0.311823 0.498265 -0.85982 REMARK 350 BIOMT2 57 0.306082 0.500202 0.810008 1.42341 REMARK 350 BIOMT3 57 -0.501812 0.807815 -0.309225 -2.30684 REMARK 350 BIOMT1 58 -0.503037 0.807278 0.308637 0.11139 REMARK 350 BIOMT2 58 0.807278 0.311359 0.501357 1.04668 REMARK 350 BIOMT3 58 0.308637 0.501357 -0.808322 -2.91709 REMARK 350 BIOMT1 59 0.497779 0.810748 -0.308065 -0.27055 REMARK 350 BIOMT2 59 0.809496 -0.306798 0.500590 0.44429 REMARK 350 BIOMT3 59 0.311339 -0.498561 -0.809015 -3.89116 REMARK 350 BIOMT1 60 0.810343 -0.306208 -0.499580 -1.47782 REMARK 350 BIOMT2 60 0.309672 -0.499998 0.808768 0.44872 REMARK 350 BIOMT3 60 -0.497440 -0.810086 -0.310346 -3.88293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 179 O TRP B 278 2.04 REMARK 500 O CYS A 324 OG SER A 368 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 73 21.00 -141.16 REMARK 500 HIS A 88 31.04 -87.95 REMARK 500 LEU A 92 -10.20 79.71 REMARK 500 ALA A 140 69.87 62.34 REMARK 500 ARG A 157 -8.83 73.59 REMARK 500 ILE A 160 68.66 60.67 REMARK 500 LEU A 202 -54.57 145.36 REMARK 500 LYS A 219 -12.38 73.14 REMARK 500 GLU A 220 128.32 -173.96 REMARK 500 GLN A 299 84.87 59.44 REMARK 500 PRO A 300 -1.17 -55.28 REMARK 500 THR A 322 -57.80 -120.78 REMARK 500 CYS A 324 32.66 -87.27 REMARK 500 THR A 325 -164.58 -74.62 REMARK 500 ASP A 326 -3.93 -58.89 REMARK 500 GLU A 330 -52.72 147.54 REMARK 500 ALA A 335 -51.62 103.12 REMARK 500 PHE A 344 138.45 71.54 REMARK 500 VAL A 353 -86.02 67.40 REMARK 500 ILE A 448 -61.07 -123.81 REMARK 500 ASP A 474 36.17 -99.54 REMARK 500 SER A 476 -10.69 73.57 REMARK 500 ASN A 481 64.92 -103.41 REMARK 500 LEU A 487 -17.38 74.31 REMARK 500 HIS A 517 -1.84 57.84 REMARK 500 ALA A 531 148.09 67.02 REMARK 500 ARG A 539 144.94 69.19 REMARK 500 ASN A 559 80.50 53.98 REMARK 500 THR B 123 -7.69 66.27 REMARK 500 TYR B 151 -10.18 81.56 REMARK 500 MET B 172 -26.10 74.25 REMARK 500 ASP B 195 51.47 -94.44 REMARK 500 HIS B 203 -76.79 67.72 REMARK 500 LEU B 204 80.35 58.76 REMARK 500 PRO B 205 160.32 -48.84 REMARK 500 TYR B 245 -62.79 -94.77 REMARK 500 SER B 280 153.62 69.58 REMARK 500 SER B 393 179.83 59.42 REMARK 500 GLN B 412 -3.69 85.20 REMARK 500 ASN B 415 143.84 68.56 REMARK 500 ILE B 463 -34.37 139.24 REMARK 500 THR B 471 -63.20 -93.33 REMARK 500 ASN B 474 36.46 -98.38 REMARK 500 ARG B 481 -11.54 73.63 REMARK 500 LEU B 490 -113.97 34.12 REMARK 500 GLU B 499 -45.28 172.39 REMARK 500 THR B 501 36.54 -73.48 REMARK 500 TRP B 509 -20.88 77.40 REMARK 500 PHE B 521 -115.03 57.06 REMARK 500 MET B 531 73.37 75.17 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-54289 RELATED DB: EMDB REMARK 900 PENICILLIUM CHRYSOGENUM VIRUS EMPTY VIRIONS DBREF 9RVN A 20 560 UNP Q8JVC1 CAPSD_PCVC 20 560 DBREF 9RVN B 36 590 UNP Q8JVB9 P4_PCVC 36 590 SEQADV 9RVN LYS B 192 UNP Q8JVB9 THR 192 CONFLICT SEQADV 9RVN LYS B 540 UNP Q8JVB9 ARG 540 CONFLICT SEQRES 1 A 541 MET ARG ARG SER LEU MET HIS GLU LYS LYS GLN VAL PHE SEQRES 2 A 541 ALA GLU LEU ARG ARG GLU ALA GLN ALA LEU ARG VAL ALA SEQRES 3 A 541 LYS GLU ALA ARG GLY LYS MET SER VAL TRP ASP PRO SER SEQRES 4 A 541 THR ARG GLU GLY ALA ARG GLY TYR ARG GLU LYS VAL VAL SEQRES 5 A 541 ARG PHE GLY ARG GLN ILE ALA SER LEU LEU GLN TYR PHE SEQRES 6 A 541 GLU ASN MET HIS SER PRO ALA LEU ASP ILE ILE ALA CYS SEQRES 7 A 541 ASP LYS PHE LEU LEU LYS TYR GLN ILE TYR GLY ASP ILE SEQRES 8 A 541 ASP ARG ASP PRO ALA PHE GLY GLU ASN THR MET THR ALA SEQRES 9 A 541 GLU VAL PRO VAL VAL TRP ASP LYS CYS GLU VAL GLU VAL SEQRES 10 A 541 LYS LEU TYR ALA GLY PRO LEU GLN LYS LEU MET SER ARG SEQRES 11 A 541 ALA LYS LEU VAL GLY ALA ALA ARG GLU GLY ILE PRO ASN SEQRES 12 A 541 ARG ASN ASP VAL ALA LYS SER THR GLY TRP ASN GLN ASP SEQRES 13 A 541 GLN VAL GLN LYS PHE PRO ASP ASN ARG MET ASP SER LEU SEQRES 14 A 541 ILE SER LEU LEU GLU GLN MET GLN THR GLY GLN SER LYS SEQRES 15 A 541 LEU THR ARG LEU VAL LYS GLY PHE LEU ILE LEU LEU GLU SEQRES 16 A 541 MET ALA GLU ARG LYS GLU VAL ASP PHE HIS VAL GLY ASN SEQRES 17 A 541 HIS ILE HIS VAL THR TYR ALA ILE ALA PRO VAL CYS ASP SEQRES 18 A 541 SER TYR ASP LEU PRO GLY ARG CYS TYR VAL PHE ASN SER SEQRES 19 A 541 LYS PRO THR SER GLU ALA HIS ALA ALA VAL LEU LEU ALA SEQRES 20 A 541 MET CYS ARG GLU TYR PRO PRO PRO GLN PHE ALA SER HIS SEQRES 21 A 541 VAL SER VAL PRO ALA ASP ALA GLU ASP VAL CYS ILE VAL SEQRES 22 A 541 SER GLN GLY ARG GLN ILE GLN PRO GLY SER ALA VAL THR SEQRES 23 A 541 LEU ASN PRO GLY LEU VAL TYR SER SER ILE LEU THR TYR SEQRES 24 A 541 ALA MET ASP THR SER CYS THR ASP LEU LEU GLN GLU ALA SEQRES 25 A 541 GLN ILE ILE ALA CYS SER LEU GLN GLU ASN ARG TYR PHE SEQRES 26 A 541 SER ARG ILE GLY LEU PRO THR VAL VAL SER LEU TYR ASP SEQRES 27 A 541 LEU MET VAL PRO ALA PHE ILE ALA GLN ASN SER ALA LEU SEQRES 28 A 541 GLU GLY ALA ARG LEU SER GLY ASP LEU SER LYS ALA VAL SEQRES 29 A 541 GLY ARG VAL HIS GLN MET LEU GLY MET VAL ALA ALA LYS SEQRES 30 A 541 ASP ILE ILE SER ALA THR HIS MET GLN SER ARG THR GLY SEQRES 31 A 541 PHE ASP PRO SER HIS GLY ILE ARG GLN TYR LEU ASN SER SEQRES 32 A 541 ASN SER ARG LEU VAL THR GLN MET ALA SER LYS LEU THR SEQRES 33 A 541 GLY ILE GLY LEU PHE ASP ALA THR PRO GLN MET ARG ILE SEQRES 34 A 541 PHE SER GLU MET ASP THR ALA ASP TYR ALA ASP MET LEU SEQRES 35 A 541 HIS LEU THR ILE PHE GLU GLY LEU TRP LEU VAL GLN ASP SEQRES 36 A 541 ALA SER VAL CYS THR ASP ASN GLY PRO ILE SER PHE LEU SEQRES 37 A 541 VAL ASN GLY GLU LYS LEU LEU SER ALA ASP ARG ALA GLY SEQRES 38 A 541 TYR ASP VAL LEU VAL GLU GLU LEU THR LEU ALA ASN ILE SEQRES 39 A 541 ARG ILE GLU HIS HIS LYS MET PRO THR GLY ALA PHE THR SEQRES 40 A 541 THR ARG TRP VAL ALA ALA LYS ARG ASP SER ALA LEU ARG SEQRES 41 A 541 LEU THR PRO ARG SER ARG THR ALA HIS ARG VAL ASP MET SEQRES 42 A 541 VAL ARG GLU CYS ASP PHE ASN PRO SEQRES 1 B 555 LEU VAL GLU GLU ILE ASP GLY PRO VAL VAL GLU LYS GLY SEQRES 2 B 555 LEU ILE SER ASP GLY GLU LYS GLU ILE ILE ARG HIS LEU SEQRES 3 B 555 ASN VAL GLN ASP LYS PHE THR ILE ASN GLY PHE ARG LYS SEQRES 4 B 555 SER VAL LYS ILE CYS HIS MET VAL SER LEU GLY ALA THR SEQRES 5 B 555 ARG GLN THR LYS ARG THR GLY THR THR GLU LEU ASP PHE SEQRES 6 B 555 MET GLY ALA GLY PRO TRP THR LEU TYR PRO SER SER ALA SEQRES 7 B 555 ARG ALA LEU TYR SER SER LYS GLU SER THR VAL HIS LEU SEQRES 8 B 555 VAL ASP GLU ALA GLN ARG ARG MET ILE MET SER LYS CYS SEQRES 9 B 555 PRO THR MET ALA GLY PRO THR SER THR GLY THR TYR MET SEQRES 10 B 555 ALA ALA ILE HIS GLU ARG LEU SER THR PRO SER ASP LEU SEQRES 11 B 555 ARG HIS LEU PHE THR LYS MET VAL LEU TYR LEU TYR ASP SEQRES 12 B 555 TYR THR LEU ALA VAL VAL SER LYS ASP ASN THR MET HIS SEQRES 13 B 555 LYS ALA ASP ASP ILE SER PHE ASP LEU ARG PRO HIS LEU SEQRES 14 B 555 PRO SER ASP ALA LEU LEU ALA THR VAL ILE ASN HIS ASP SEQRES 15 B 555 MET VAL ILE ASP GLY ASP LEU PHE THR PRO GLU GLN ILE SEQRES 16 B 555 SER LEU LEU CYS LEU ALA GLY GLN GLN TYR PRO SER VAL SEQRES 17 B 555 TRP TYR ALA GLY GLU GLY ASN ILE TYR ASN SER CYS ASN SEQRES 18 B 555 MET VAL ALA ASP ASP LEU VAL VAL VAL SER SER GLY ARG SEQRES 19 B 555 LEU THR THR ASP SER ALA PHE THR TRP GLY SER PRO ASP SEQRES 20 B 555 LYS LEU TYR ASN MET MET TRP THR ILE ALA GLN LYS LEU SEQRES 21 B 555 ASN GLY VAL SER CYS LEU MET TYR ALA LEU GLU SER MET SEQRES 22 B 555 ARG GLY LYS CYS LYS MET MET SER ASP ILE VAL ALA LYS SEQRES 23 B 555 THR ASP CYS ARG GLU VAL ASN ALA MET ILE PRO ARG SER SEQRES 24 B 555 TYR CYS MET SER THR ALA PHE GLY GLN ILE ARG GLU LYS SEQRES 25 B 555 GLN ILE VAL VAL LYS MET PRO GLY TYR PHE SER THR SER SEQRES 26 B 555 ILE GLY MET LEU SER ASP LEU MET TYR GLY MET THR PHE SEQRES 27 B 555 LYS ALA VAL ALA SER CYS VAL ALA GLU THR LEU GLY ALA SEQRES 28 B 555 MET GLY THR ILE VAL SER SER SER THR PRO ARG THR ASN SEQRES 29 B 555 PRO THR ILE ASN GLY LEU MET ARG ASP TYR GLY LEU GLN SEQRES 30 B 555 HIS THR ASN ALA TRP ASP ASN PHE MET LEU ARG ASN PHE SEQRES 31 B 555 GLU MET VAL THR ARG ARG PRO THR GLN TRP ASP ILE GLY SEQRES 32 B 555 GLN HIS MET LYS GLU TYR ALA LEU ALA LEU ALA GLU HIS SEQRES 33 B 555 VAL MET LEU GLY TYR ASP ILE GLU MET PRO SER ILE LEU SEQRES 34 B 555 LEU THR ILE PRO ALA LEU THR ALA VAL ASN THR ALA TYR SEQRES 35 B 555 GLY LEU THR ARG GLY TRP TYR GLY GLY GLY SER THR LEU SEQRES 36 B 555 ASP MET ASP LYS LYS GLN ARG LYS GLU SER THR ASP ALA SEQRES 37 B 555 LEU CYS ALA VAL GLY TRP MET CYS GLY LEU ARG GLN CYS SEQRES 38 B 555 ARG PRO GLN VAL PHE ARG ASN ARG ALA GLY LYS LYS GLN SEQRES 39 B 555 VAL MET VAL ASN ALA ALA GLU ARG LYS LEU LYS ALA GLU SEQRES 40 B 555 ALA GLY ASP ASP CYS ARG ILE ARG ASP VAL GLU PHE TRP SEQRES 41 B 555 LEU GLU ASP THR PRO GLY GLY ARG VAL ASP GLU ASN GLU SEQRES 42 B 555 GLU SER ALA PRO ASN LEU TYR LYS THR GLU PHE SER GLY SEQRES 43 B 555 THR LYS CYS ALA MET VAL PHE ASN TYR HELIX 1 AA1 ARG A 21 ALA A 39 1 19 HELIX 2 AA2 ALA A 39 LYS A 51 1 13 HELIX 3 AA3 ARG A 75 MET A 87 1 13 HELIX 4 AA4 ARG A 149 ALA A 156 1 8 HELIX 5 AA5 ASN A 162 GLY A 171 1 10 HELIX 6 AA6 ASN A 173 LYS A 179 1 7 HELIX 7 AA7 PRO A 181 ASN A 183 5 3 HELIX 8 AA8 ARG A 184 MET A 195 1 12 HELIX 9 AA9 LEU A 202 LYS A 219 1 18 HELIX 10 AB1 ALA A 234 ASP A 243 1 10 HELIX 11 AB2 SER A 257 ARG A 269 1 13 HELIX 12 AB3 GLY A 309 THR A 322 1 14 HELIX 13 AB4 LEU A 327 GLN A 332 1 6 HELIX 14 AB5 GLN A 332 SER A 337 1 6 HELIX 15 AB6 SER A 354 PHE A 363 5 10 HELIX 16 AB7 SER A 376 SER A 406 1 31 HELIX 17 AB8 PRO A 412 LYS A 433 1 22 HELIX 18 AB9 LEU A 439 THR A 443 5 5 HELIX 19 AC1 ILE A 448 MET A 452 5 5 HELIX 20 AC2 ASP A 453 HIS A 462 1 10 HELIX 21 AC3 THR A 464 VAL A 472 5 9 HELIX 22 AC4 ILE A 484 ASN A 489 1 6 HELIX 23 AC5 ALA A 499 ALA A 511 1 13 HELIX 24 AC6 GLY B 42 LEU B 49 1 8 HELIX 25 AC7 SER B 51 HIS B 60 1 10 HELIX 26 AC8 ASP B 128 CYS B 139 1 12 HELIX 27 AC9 ALA B 143 GLY B 149 1 7 HELIX 28 AD1 TYR B 151 SER B 160 1 10 HELIX 29 AD2 LEU B 165 SER B 185 1 21 HELIX 30 AD3 PRO B 205 HIS B 216 1 12 HELIX 31 AD4 ASP B 223 PHE B 225 5 3 HELIX 32 AD5 THR B 226 GLN B 238 1 13 HELIX 33 AD6 GLY B 279 LEU B 295 1 17 HELIX 34 AD7 GLY B 297 MET B 308 1 12 HELIX 35 AD8 GLY B 310 THR B 322 1 13 HELIX 36 AD9 GLY B 355 SER B 358 5 4 HELIX 37 AE1 THR B 359 LEU B 384 1 26 HELIX 38 AE2 ASN B 399 GLY B 410 1 12 HELIX 39 AE3 ASN B 419 ARG B 430 1 12 HELIX 40 AE4 ASP B 436 GLN B 439 5 4 HELIX 41 AE5 HIS B 440 LEU B 454 1 15 HELIX 42 AE6 ILE B 463 ILE B 467 5 5 HELIX 43 AE7 THR B 475 THR B 480 1 6 HELIX 44 AE8 ALA B 503 CYS B 511 1 9 HELIX 45 AE9 VAL B 520 ARG B 524 5 5 HELIX 46 AF1 LYS B 538 ALA B 543 1 6 HELIX 47 AF2 GLU B 566 SER B 570 1 5 SHEET 1 AA1 2 SER A 53 TRP A 55 0 SHEET 2 AA1 2 VAL A 477 THR A 479 1 O CYS A 478 N SER A 53 SHEET 1 AA2 4 THR A 120 VAL A 128 0 SHEET 2 AA2 4 LYS A 99 TYR A 107 -1 N TYR A 104 O ALA A 123 SHEET 3 AA2 4 GLY A 523 LYS A 533 -1 O VAL A 530 N LYS A 103 SHEET 4 AA2 4 GLY A 490 LYS A 492 -1 N LYS A 492 O GLY A 523 SHEET 1 AA3 3 VAL A 280 SER A 281 0 SHEET 2 AA3 3 VAL A 134 LEU A 138 1 N VAL A 136 O SER A 281 SHEET 3 AA3 3 ARG A 346 LEU A 349 1 O ILE A 347 N LYS A 137 SHEET 1 AA4 2 VAL A 221 HIS A 224 0 SHEET 2 AA4 2 ALA A 303 LEU A 306 -1 O LEU A 306 N VAL A 221 SHEET 1 AA5 3 ILE A 229 THR A 232 0 SHEET 2 AA5 3 VAL A 289 SER A 293 1 O ILE A 291 N VAL A 231 SHEET 3 AA5 3 CYS A 248 ASN A 252 1 N ASN A 252 O VAL A 292 SHEET 1 AA6 2 ARG A 374 LEU A 375 0 SHEET 2 AA6 2 ALA B 115 LEU B 116 -1 O LEU B 116 N ARG A 374 SHEET 1 AA7 3 ARG A 545 ARG A 549 0 SHEET 2 AA7 3 THR B 189 ALA B 193 -1 O LYS B 192 N THR A 546 SHEET 3 AA7 3 VAL B 243 TRP B 244 -1 O TRP B 244 N HIS B 191 SHEET 1 AA8 3 VAL A 553 ARG A 554 0 SHEET 2 AA8 3 MET B 586 VAL B 587 -1 O MET B 586 N ARG A 554 SHEET 3 AA8 3 VAL B 564 ASP B 565 1 N VAL B 564 O VAL B 587 SHEET 1 AA9 2 GLU B 38 ILE B 40 0 SHEET 2 AA9 2 GLN B 348 VAL B 350 1 O ILE B 349 N ILE B 40 SHEET 1 AB1 3 THR B 90 LEU B 98 0 SHEET 2 AB1 3 VAL B 76 LEU B 84 -1 N VAL B 76 O LEU B 98 SHEET 3 AB1 3 ILE B 549 LEU B 556 -1 O TRP B 555 N CYS B 79 SHEET 1 AB2 3 CYS B 255 ASN B 256 0 SHEET 2 AB2 3 TRP B 106 TYR B 109 1 N LEU B 108 O ASN B 256 SHEET 3 AB2 3 GLU B 326 ASN B 328 1 O VAL B 327 N TYR B 109 SHEET 1 AB3 4 LEU B 200 ARG B 201 0 SHEET 2 AB3 4 LEU B 262 VAL B 265 1 O VAL B 264 N ARG B 201 SHEET 3 AB3 4 MET B 218 ASP B 221 1 N ILE B 220 O VAL B 265 SHEET 4 AB3 4 CYS B 336 THR B 339 1 O THR B 339 N ASP B 221 CISPEP 1 TYR B 240 PRO B 241 0 -9.40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 360 0 0 47 34 0 0 6 8556 2 0 85 END